Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 307 of 332
Found at i:101137971 original size:44 final size:44
Alignment explanation
Indices: 101137922--101138029 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 44
101137912 ACTCCTCTGT
*
101137922 AACTTCAAGGAGATAAGATT-CGCACCTTCAATCTGTTCCACTAC
1 AACTTCAAGGAGACAAGATTAC-CACCTTCAATCTGTTCCACTAC
** * * *
101137966 AACTTCAAGGAGACAAGATTTACCGTCTTCGATTTGTTCCACTGC
1 AACTTCAAGGAGACAAGA-TTACCACCTTCAATCTGTTCCACTAC
*
101138011 AACTTCAGGGAGACAAGAT
1 AACTTCAAGGAGACAAGAT
101138030 CTGTAAATTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 18 0.33
45 36 0.65
46 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
AACTTCAAGGAGACAAGATTACCACCTTCAATCTGTTCCACTAC
Found at i:101144139 original size:46 final size:46
Alignment explanation
Indices: 101144087--101144262 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
101144077 TGGTTGAGCA
*
101144087 TCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
101144133 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
101144178 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101144226 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101144263 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101149261 original size:19 final size:20
Alignment explanation
Indices: 101149239--101149281 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
101149229 GGTTTTTTCG
* *
101149239 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
101149258 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
101149278 TGAA
1 TGAA
101149282 TGCAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:101153338 original size:25 final size:25
Alignment explanation
Indices: 101153308--101153392 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 25
101153298 AAAATCGTTC
*
101153308 ACATATAAAATGGTATAACAAAATA
1 ACATATAAAATAGTATAACAAAATA
*
101153333 ACATATAAAA-ACT-TAA-AACATATA
1 ACATATAAAATAGTATAACAA-A-ATA
* *
101153357 ATATATAAAATAGTTTAACAAGAATA
1 ACATATAAAATAGTATAACAA-AATA
*
101153383 ACGTATAAAA
1 ACATATAAAA
101153393 ATATTTAGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
22 2 0.04
23 4 0.08
24 13 0.27
25 12 0.25
26 14 0.29
27 3 0.06
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.26
Consensus pattern (25 bp):
ACATATAAAATAGTATAACAAAATA
Found at i:101153383 original size:26 final size:24
Alignment explanation
Indices: 101153323--101153412 Score: 62
Period size: 26 Copynumber: 3.6 Consensus size: 24
101153313 TAAAATGGTA
* *
101153323 TAACAAAATAACATATAAAA-ACT
1 TAACAAAATAATATATAAAATATT
101153346 TAA-AACATATAATATATAAAATAGTT
1 TAACAA-A-ATAATATATAAAATA-TT
101153372 TAACAAGAATAACGTATA-AAAATATT
1 TAACAA-AATAA--TATATAAAATATT
101153398 TAGA-ATAAATAATAT
1 TA-ACA-AAATAATAT
101153413 GAAAAGAGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
22 2 0.04
23 4 0.07
24 15 0.27
25 1 0.02
26 18 0.33
27 11 0.20
28 4 0.07
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (24 bp):
TAACAAAATAATATATAAAATATT
Found at i:101154605 original size:15 final size:15
Alignment explanation
Indices: 101154585--101154614 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101154575 CTGTTACCAT
*
101154585 TTGTTTTTTTGTTTG
1 TTGTTTGTTTGTTTG
101154600 TTGTTTGTTTGTTTG
1 TTGTTTGTTTGTTTG
101154615 CTGCTTGCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (15 bp):
TTGTTTGTTTGTTTG
Found at i:101156989 original size:33 final size:30
Alignment explanation
Indices: 101156921--101156991 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
101156911 CTTACTTTCC
* **
101156921 AAATATTTGTTGTTTTTATTATCTTCATTT
1 AAATATTTGTTATTTTTATTATCTTCAACT
*
101156951 AAATATTTGTTATTTTTATTATTTTCTAACT
1 AAATATTTGTTATTTTTATTATCTTC-AACT
101156982 ACTAATATTT
1 A--AATATTT
101156992 ATTTATTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.71
31 3 0.09
33 7 0.21
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (30 bp):
AAATATTTGTTATTTTTATTATCTTCAACT
Found at i:101157362 original size:23 final size:23
Alignment explanation
Indices: 101157324--101157382 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
101157314 TCATTATTTT
* *
101157324 CTATTATTGTTATTATCAATACA
1 CTATTATTATTCTTATCAATACA
* **
101157347 CTATTATTATTCTTATTAATGTA
1 CTATTATTATTCTTATCAATACA
*
101157370 TTATTATTATTCT
1 CTATTATTATTCT
101157383 CTACTTTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (23 bp):
CTATTATTATTCTTATCAATACA
Found at i:101157430 original size:3 final size:3
Alignment explanation
Indices: 101157268--101157412 Score: 84
Period size: 3 Copynumber: 48.3 Consensus size: 3
101157258 ATTTTTATCG
* * *
101157268 TAT TAT TAT TAT TAT TAT TAT TCCT TAG T-T TAT TAT TAT TAC T-T
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
101157312 TAT CAT TAT TTT CTAT TAT TGT TAT TAT CAA TA- CAC TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
101157357 TCT TAT TAAT GTAT TAT TAT TAT TCT CTAC T-T TAT TAT TAT TA- TAT
1 TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
*
101157403 TAT TAC TAT T
1 TAT TAT TAT T
101157413 GCTATCATCA
Statistics
Matches: 106, Mismatches: 26, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
2 6 0.06
3 90 0.85
4 9 0.08
5 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:101157895 original size:15 final size:15
Alignment explanation
Indices: 101157872--101157901 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101157862 TATATATTAC
*
101157872 TTATTTTAAAATTTT
1 TTATCTTAAAATTTT
101157887 TTATCTTAAAATTTT
1 TTATCTTAAAATTTT
101157902 ACTTTGGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATCTTAAAATTTT
Found at i:101158085 original size:27 final size:26
Alignment explanation
Indices: 101158043--101158113 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 26
101158033 TACTTTGTGA
101158043 ATTATTTATCTT-AATTT-ATTTAACAT
1 ATTATTTAT-TTAAATTTGATTT-ACAT
* *
101158069 ATTATTTATTTGAAATTTGCTTTATAT
1 ATTATTTATTT-AAATTTGATTTACAT
101158096 ATTATTTTATTTCAAATT
1 ATTA-TTTATTT-AAATT
101158114 GTTTTATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.05
26 9 0.24
27 12 0.32
28 15 0.39
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (26 bp):
ATTATTTATTTAAATTTGATTTACAT
Found at i:101158119 original size:27 final size:28
Alignment explanation
Indices: 101158067--101158128 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
101158057 TTTATTTAAC
*
101158067 ATATTA-TTTATTTGAAATTTGCTTTAT
1 ATATTATTTTATTTCAAATTTGCTTTAT
*
101158094 ATATTATTTTATTTCAAA-TTGTTTTAT
1 ATATTATTTTATTTCAAATTTGCTTTAT
*
101158121 ATGTTATT
1 ATATTATT
101158129 CATGTTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (28 bp):
ATATTATTTTATTTCAAATTTGCTTTAT
Found at i:101159698 original size:27 final size:26
Alignment explanation
Indices: 101159647--101159699 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
101159637 CAAATAAAAC
* *
101159647 AAATTGAAACTAATGATATATATATG
1 AAATTGAAACTAATGATACAAATATG
101159673 AAATTGAAAACCTAAT-ATACAAATATG
1 AAATTG-AAA-CTAATGATACAAATATG
101159700 CTAATTTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTGAAACTAATGATACAAATATG
Found at i:101160031 original size:3 final size:3
Alignment explanation
Indices: 101160023--101160080 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
101160013 GAATTAAAAT
* * *
101160023 TAA TAA TAA CAA -AA TAA TAA TAA TAA TAGC T-A TAA TAA TAA TAGC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A
101160068 T-A TAA TAA TAA TA
1 TAA TAA TAA TAA TA
101160081 GGAGGATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:101160059 original size:15 final size:15
Alignment explanation
Indices: 101160039--101160081 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
101160029 TAACAAAATA
101160039 ATAATAATAATAGCT
1 ATAATAATAATAGCT
101160054 ATAATAATAATAGCT
1 ATAATAATAATAGCT
101160069 ATAATAATAATAG
1 ATAATAATAATAG
101160082 GAGGATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (15 bp):
ATAATAATAATAGCT
Found at i:101161557 original size:12 final size:12
Alignment explanation
Indices: 101161529--101161567 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
101161519 GCCTCTACAC
*
101161529 ATTGTTATCATT
1 ATTGTTATTATT
* *
101161541 GTTGTTCTTATT
1 ATTGTTATTATT
101161553 ATTGTTATTATT
1 ATTGTTATTATT
101161565 ATT
1 ATT
101161568 TTTGTGTCAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (12 bp):
ATTGTTATTATT
Found at i:101164233 original size:24 final size:22
Alignment explanation
Indices: 101164181--101164235 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
101164171 AAAATCAAAG
*
101164181 TAAAATAAAAAAAATGATAATT
1 TAAAATAAAAAAAATGATAATA
* *
101164203 TACAAATAAAATAAATTACTAATAA
1 TA-AAATAAAAAAAATGA-TAAT-A
101164228 TAAAATAA
1 TAAAATAA
101164236 GGACCCATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.07
23 13 0.48
24 10 0.37
25 2 0.07
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAAATAAAAAAAATGATAATA
Found at i:101166367 original size:73 final size:72
Alignment explanation
Indices: 101166236--101166828 Score: 412
Period size: 73 Copynumber: 8.0 Consensus size: 72
101166226 AGAAATTGAA
* * * * * *
101166236 AAAAAATATATTGAAAATACCTCGGCATATGACCTGAGGCTTAACTCACCTCTCGCAATATGAGT
1 AAAACATA-ATTGAAAATACCTCAGCA-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
101166301 TGATTTTTG
64 TGATTTTTG
* * * *
101166310 -AAACATAAATTGAAAATACCTC-GCTATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAA
1 AAAACAT-AATTGAAAATACCTCAGC-A-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
101166373 TTGATTTTTG
63 TTGATTTTTG
* ** * * * * * * *
101166383 AAAACGTAATT-----TGGCT-ATGC---GACCCGAGGCTTAATTCACCTTTAGCACTATGAATT
1 AAAACATAATTGAAAATACCTCA-GCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
101166439 GATTTTTG
65 GATTTTTG
* * * * * * * *
101166447 AAAACATAAATTGAAAA-ACAGAAATC-GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACAT
1 AAAACAT-AATTGAAAATAC----CTCAG-CAGTGCC-CCG-A-G-GCT----C-AA-CTCACCT
*
101166510 CTCGCAGTATGAGTT-ATTTTTG
50 CTCGCAATATGAGTTGATTTTTG
101166532 ACAAACAGTAATTGAAAATACCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 A-AAACA-TAATTGAAAATACCTCAGCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
101166596 TGATTTTTTTG
64 TGA--TTTTTG
* * * *
101166607 ACAAACAGTAATTGAAAATACCTCAGC-GTGCCCCGAGGCTCAACTTACCTCCCACAGTATGAGT
1 A-AAACA-TAATTGAAAATACCTCAGCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
101166671 TAATTTTTG
64 TGATTTTTG
* * * *
101166680 ACAAACAGTAATTGAAAATACCTCAGTA-TGCCCCGAGGCTCAACTCACTTCCCGCAGTATGAGT
1 A-AAACA-TAATTGAAAATACCTCAGCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
101166744 TGATTTTTG
64 TGATTTTTG
*
101166753 ACAAATAGTAATTGAAAATACCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 A-AAACA-TAATTGAAAATACCTCAGCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
101166817 TGAATTTTG
64 TGATTTTTG
101166826 AAA
1 AAA
101166829 CAGAAATAAA
Statistics
Matches: 425, Mismatches: 55, Indels: 80
0.76 0.10 0.14
Matches are distributed among these distances:
64 47 0.11
65 4 0.01
68 3 0.01
69 2 0.00
72 25 0.06
73 208 0.49
74 7 0.02
75 68 0.16
76 1 0.00
77 2 0.00
78 3 0.01
79 2 0.00
80 3 0.01
81 2 0.00
82 3 0.01
83 2 0.00
84 1 0.00
85 9 0.02
86 30 0.07
87 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (72 bp):
AAAACATAATTGAAAATACCTCAGCAGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTG
Found at i:101166419 original size:64 final size:64
Alignment explanation
Indices: 101166332--101166451 Score: 204
Period size: 64 Copynumber: 1.9 Consensus size: 64
101166322 AAAATACCTC
*
101166332 GCTATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACGTAATTTG
1 GCTATGCGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACGTAATTTG
* * *
101166396 GCTATGCGACCCGAGGCTTAATTCACCTTTAGCACTATGAATTGATTTTTGAAAAC
1 GCTATGCGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAAC
101166452 ATAAATTGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (64 bp):
GCTATGCGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACGTAATTTG
Found at i:101166741 original size:148 final size:146
Alignment explanation
Indices: 101166457--101166824 Score: 549
Period size: 148 Copynumber: 2.5 Consensus size: 146
101166447 AAAACATAAA
* * * * * * *
101166457 TTGAAAAACAGAAATCGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACATCTCGCAGTATGA
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAGTATGA
* *
101166522 GTT-ATTTTTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
66 GTTAATTTTTGACAAACAGTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCG
101166586 CAATATGAGTTGATTTTT
131 CAATATGAGTTGA--TTT
* * *
101166604 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCCCACAGTATGA
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAGTATGA
* *
101166669 GTTAATTTTTGACAAACAGTAATTGAAAATACCTCAGTATGCCCCGAGGCTCAACTCACTTCCCG
66 GTTAATTTTTGACAAACAGTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCG
*
101166734 CAGTATGAGTTGATTT
131 CAATATGAGTTGATTT
* *
101166750 TTGACAAATAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAGTATGA
101166815 GTTGAATTTT
66 GTT-AATTTT
101166825 GAAACAGAAA
Statistics
Matches: 199, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
146 66 0.33
147 64 0.32
148 69 0.35
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (146 bp):
TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAGTATGA
GTTAATTTTTGACAAACAGTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCG
CAATATGAGTTGATTT
Found at i:101178652 original size:22 final size:22
Alignment explanation
Indices: 101178595--101178653 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
101178585 TACGAGGGCT
* * *
101178595 GTGGAGGTATGGGACTGTTGTA
1 GTGGAGGTATGGGGCCGCTGTA
*
101178617 GTGGGGGTATGGGGCCGCTGTA
1 GTGGAGGTATGGGGCCGCTGTA
101178639 GTGGAGGTATGGGGC
1 GTGGAGGTATGGGGC
101178654 TGCTTCATGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.14, C:0.08, G:0.53, T:0.25
Consensus pattern (22 bp):
GTGGAGGTATGGGGCCGCTGTA
Found at i:101180970 original size:21 final size:21
Alignment explanation
Indices: 101180940--101180982 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
101180930 ATAAACAATA
* *
101180940 TAATGGTTTTGCCATTTAACT
1 TAATGATTTTGACATTTAACT
*
101180961 TAATGATTTTGACTTTTAACT
1 TAATGATTTTGACATTTAACT
101180982 T
1 T
101180983 TAGAAAGGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.51
Consensus pattern (21 bp):
TAATGATTTTGACATTTAACT
Found at i:101186288 original size:26 final size:26
Alignment explanation
Indices: 101186252--101186325 Score: 148
Period size: 26 Copynumber: 2.8 Consensus size: 26
101186242 CATGAAATTC
101186252 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101186278 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101186304 TTATCATGAAACATTTACCTAA
1 TTATCATGAAACATTTACCTAA
101186326 ACATTTACCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101186329 original size:12 final size:12
Alignment explanation
Indices: 101186312--101186337 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
101186302 CATTATCATG
101186312 AAACATTTACCT
1 AAACATTTACCT
101186324 AAACATTTACCT
1 AAACATTTACCT
101186336 AA
1 AA
101186338 CCCATTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (12 bp):
AAACATTTACCT
Found at i:101186337 original size:38 final size:38
Alignment explanation
Indices: 101186286--101186363 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
101186276 CATTATCATG
*
101186286 AAACATTTACCTAACCCATTATCATGAAACATTTACCT
1 AAACATTTACCTAACCCATTATCAAGAAACATTTACCT
101186324 AAACATTTACCTAACCCATTATCAAGAAACATTTACCT
1 AAACATTTACCTAACCCATTATCAAGAAACATTTACCT
101186362 AA
1 AA
101186364 CCTATTATCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (38 bp):
AAACATTTACCTAACCCATTATCAAGAAACATTTACCT
Found at i:101186345 original size:64 final size:64
Alignment explanation
Indices: 101186260--101186389 Score: 233
Period size: 64 Copynumber: 2.0 Consensus size: 64
101186250 TCTTATCATG
*
101186260 AAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCT
1 AAACATTTACCTAACCCATTATCAAGAAACATTTACCTAACCCATTATCATGAAACATTTACCT
* *
101186324 AAACATTTACCTAACCCATTATCAAGAAACATTTACCTAACCTATTATCATGGAACATTTACCT
1 AAACATTTACCTAACCCATTATCAAGAAACATTTACCTAACCCATTATCATGAAACATTTACCT
101186388 AA
1 AA
101186390 CCTATTATCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.31
Consensus pattern (64 bp):
AAACATTTACCTAACCCATTATCAAGAAACATTTACCTAACCCATTATCATGAAACATTTACCT
Found at i:101186355 original size:26 final size:26
Alignment explanation
Indices: 101186324--101186400 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
101186314 ACATTTACCT
*
101186324 AAACATTTACCTAACCCATTATCAAG
1 AAACATTTACCTAACCTATTATCAAG
*
101186350 AAACATTTACCTAACCTATTATCATG
1 AAACATTTACCTAACCTATTATCAAG
*
101186376 GAACATTTACCTAACCTATTATCAA
1 AAACATTTACCTAACCTATTATCAA
101186401 TTTGTATCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.31
Consensus pattern (26 bp):
AAACATTTACCTAACCTATTATCAAG
Found at i:101190553 original size:26 final size:26
Alignment explanation
Indices: 101190524--101190576 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
101190514 TCAAACATGC
101190524 ATTTAAGTCAATTTA-CCCCTAGGGGT
1 ATTTAAGT-AATTTATCCCCTAGGGGT
** *
101190550 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTATCCCCTAGGGGT
101190576 A
1 A
101190577 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTATCCCCTAGGGGT
Found at i:101192096 original size:26 final size:26
Alignment explanation
Indices: 101192060--101192169 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
101192050 CATGAAATTC
101192060 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
101192086 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAACCCA
* *
101192112 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
101192138 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101192164 TTATCA
1 TTATCA
101192170 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101193450 original size:22 final size:22
Alignment explanation
Indices: 101193401--101193456 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
101193391 TGAGAATTTC
101193401 TCATATAGTTTTTAATAGCCTT
1 TCATATAGTTTTTAATAGCCTT
* * *
101193423 TAATATA-TTTTTATTAAGCTTT
1 TCATATAGTTTTTAAT-AGCCTT
101193445 TCATATAAGTTT
1 TCATAT-AGTTT
101193457 GGTAAATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 7 0.26
22 16 0.59
23 1 0.04
24 3 0.11
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (22 bp):
TCATATAGTTTTTAATAGCCTT
Found at i:101196335 original size:5 final size:5
Alignment explanation
Indices: 101196327--101196351 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
101196317 TTATTTTTTA
101196327 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
101196352 CACAGTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:101201827 original size:2 final size:2
Alignment explanation
Indices: 101201820--101201845 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
101201810 TTTGGTGCTA
101201820 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
101201846 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:101203002 original size:3 final size:3
Alignment explanation
Indices: 101202994--101203083 Score: 69
Period size: 3 Copynumber: 30.7 Consensus size: 3
101202984 AACGAAAACG
* *
101202994 ATA ATA ATA ATA AT- ATAA ATA ATA ATA ATA ATA GTA GTA A-A AT-
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* ** * * * *
101203037 ATA ATA ATA CTA ACG ATA ATA ATA ATA GTC ATA ATA AGA ATA TTA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
101203084 TGTTGTAGGC
Statistics
Matches: 67, Mismatches: 16, Indels: 8
0.74 0.18 0.09
Matches are distributed among these distances:
2 6 0.09
3 59 0.88
4 2 0.03
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:101203292 original size:30 final size:30
Alignment explanation
Indices: 101203256--101203414 Score: 239
Period size: 30 Copynumber: 5.3 Consensus size: 30
101203246 CTAGCCTTTG
101203256 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
101203286 CCACCACCAACTCCACTAGCTACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
101203316 CCACCACCTACTCCAGTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
101203346 CTACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
101203376 CCACCACCTACTCCA-TCAGCCACACTTGCT
1 CCACCACCAACTCCACT-AGCCACACTTGCT
*
101203406 CTACCACCA
1 CCACCACCA
101203415 CTTGTACCTA
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
29 1 0.01
30 118 0.99
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:101203939 original size:22 final size:22
Alignment explanation
Indices: 101203889--101203949 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
101203879 TCTTTTTTTG
101203889 TTATTATTATATT-TTTTAATA
1 TTATTATTATATTCTTTTAATA
101203910 TTACATTATATATATTCTTTTAATA
1 TT--ATTAT-TATATTCTTTTAATA
*
101203935 -TATTAGGTATATTCT
1 TTATTA-TTATATTCT
101203950 AAATTCTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
21 2 0.06
22 12 0.35
23 5 0.15
24 7 0.21
25 8 0.24
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (22 bp):
TTATTATTATATTCTTTTAATA
Found at i:101203993 original size:25 final size:24
Alignment explanation
Indices: 101203955--101204022 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 24
101203945 ATTCTAAATT
*
101203955 CTATATTACGTATATATA-TT-ATA
1 CTATATTA-TTATATATATTTAATA
* *
101203978 CTATTTTATGTATATATCTTTAATA
1 CTATATTAT-TATATATATTTAATA
101204003 CTATATTATTATATATATTT
1 CTATATTATTATATATATTT
101204023 TTTTTCTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
23 14 0.38
24 12 0.32
25 11 0.30
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.54
Consensus pattern (24 bp):
CTATATTATTATATATATTTAATA
Found at i:101204091 original size:25 final size:24
Alignment explanation
Indices: 101204041--101204103 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
101204031 CATGTTATCT
*
101204041 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
101204067 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
101204092 TACATATTTTTT
1 TATGTATTTTTT
101204104 TATATCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:101204192 original size:25 final size:24
Alignment explanation
Indices: 101204164--101204219 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101204154 GTTATATTTT
*
101204164 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
101204189 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
101204212 CACTATTA
1 CACTATTA
101204220 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:101216342 original size:13 final size:13
Alignment explanation
Indices: 101216308--101216343 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
101216298 GCTGAGGTAT
*
101216308 TTTTAATTTCTGT
1 TTTTAATTTCTGC
101216321 TTTTCAATTTCTGC
1 TTTT-AATTTCTGC
101216335 TTTTAATTT
1 TTTTAATTT
101216344 TTGTTTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (13 bp):
TTTTAATTTCTGC
Found at i:101216351 original size:13 final size:13
Alignment explanation
Indices: 101216307--101216351 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
101216297 CGCTGAGGTA
101216307 TTTTTAATTTCTG
1 TTTTTAATTTCTG
101216320 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
101216334 CTTTTAATTTTTG
1 TTTTTAATTTCTG
101216347 TTTTT
1 TTTTT
101216352 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:101216490 original size:99 final size:99
Alignment explanation
Indices: 101216255--101216625 Score: 573
Period size: 99 Copynumber: 3.7 Consensus size: 99
101216245 TGCTTTTCAA
* * * *
101216255 AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
* ** * * **
101216320 TTTTTCAATTTCTG-CTTTTAATTTTTGTTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
*
101216353 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
101216418 TATTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
64 TGTTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
101216454 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
101216519 TTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
* *
101216553 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
*
101216618 TTTGTCAA
66 TTTTTCAA
101216626 AACTCAACTC
Statistics
Matches: 254, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
99 167 0.66
100 74 0.29
101 13 0.05
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (99 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAATTTTTGCCTTACAAATTCTACTTTTC
Found at i:101216500 original size:199 final size:198
Alignment explanation
Indices: 101216255--101216614 Score: 578
Period size: 199 Copynumber: 1.8 Consensus size: 198
101216245 TGCTTTTCAA
* * *
101216255 AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
** * * **
101216320 TTTTTCAATTTCTG-CTTTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
66 TTTTTCAATTTCTGCCTTACAAATTCTACTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTT
* *
101216384 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTATTTTTCAATTTTTGCCTTACAAATTCTAC
129 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTTCAATTTTTGCCTTACAAATTCTAC
101216449 TTTTC
194 TTTTC
*
101216454 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
*
101216519 TTTTTCAATTTTTGCCTTACAAATTCTACTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 TTTTTCAATTTCTGCCTTACAAATTCTACTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGA
101216584 GCCTCAGGACACGCTGAGGTAATTTCAATTT
131 GCCTCAGGACACGCTGAGGTAATTTCAATTT
101216615 TTGTTTGTCA
Statistics
Matches: 147, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
198 60 0.41
199 74 0.50
200 13 0.09
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (198 bp):
AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAATTTCTGCCTTACAAATTCTACTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTTCAATTTTTGCCTTACAAATTCTACTT
TTC
Found at i:101216750 original size:75 final size:73
Alignment explanation
Indices: 101216553--101217467 Score: 1058
Period size: 75 Copynumber: 12.6 Consensus size: 73
101216543 TCTACTTTTC
* * * *
101216553 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101216618 TTTGTCAA
66 TTTGTCAA
* *
101216626 AACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
*
101216691 TTTTTCAAAA
66 TTTGTC--AA
* * * * * * *
101216701 AAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101216766 TTTGTCAA
66 TTTGTCAA
101216774 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
*
101216839 TCTT-TAAAAA
66 T-TTGT--CAA
* * * *
101216849 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGATATTTTCAATTTCTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
*
101216914 TTTTTCAAAA
66 TTTGTC--AA
** * * * * * * *
101216924 AAATTTACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGATAATGTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101216987 TTTGTCAA
66 TTTGTCAA
* *
101216995 AACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA------
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101217054 ------AA
66 TTTGTCAA
* * * * * * * * *
101217056 AAATCAACTCATATTGTGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101217121 TTTGTCAA
66 TTTGTCAA
101217129 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
*
101217194 TCTT-TAAAAA
66 T-TTGT--CAA
*
101217204 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
*
101217269 TTTTTCAAAA
66 TTTGTC--AA
* * * * * * *
101217279 AAATCAACTCATATTGCGATAGGTAAGTTGAACCTCAAG--TCGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101217342 TTTGTCAAA
66 TTTGTC-AA
* *
101217351 AAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
101217416 TCTT-TCAAAAA
66 T-TTGTC---AA
* *
101217427 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
101217468 GCTGAGGTGT
Statistics
Matches: 718, Mismatches: 91, Indels: 63
0.82 0.10 0.07
Matches are distributed among these distances:
61 51 0.07
71 35 0.05
72 38 0.05
73 249 0.35
74 31 0.04
75 274 0.38
76 40 0.06
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
TTTGTCAA
Found at i:101216821 original size:148 final size:148
Alignment explanation
Indices: 101216553--101217491 Score: 1143
Period size: 148 Copynumber: 6.5 Consensus size: 148
101216543 TCTACTTTTC
* *
101216553 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
* *
101216618 TTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
101216683 AATTTCTGTTTTTCAAAA
131 AATTTCTGTTTTTCAAAA
* * * * *
101216701 AAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
101216766 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* *
101216831 AATTTCTGTCTTTAAAAA
131 AATTTCTGTTTTTCAAAA
* * * *
101216849 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGATATTTTCAATTTCTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT-TT
* ** * * * * *
101216914 -TTTTTCAAAAAAATTTACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGATAAT
65 GTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
* * *
101216976 GTCAATTTTTGTTTGTC--AA
128 TTCAATTTCTGTTTTTCAAAA
* * *
101216995 AACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA------
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
* * * * * * * *
101217054 ------AAAAATCAACTCATATTGTGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTTC
66 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* *
101217113 AATTTTTGTTTGTC--AA
131 AATTTCTGTTTTTCAAAA
* *
101217129 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
* *
101217194 TCTT-TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
66 T-TTGT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
101217258 TTCAATTTCTGTTTTTCAAAA
128 TTCAATTTCTGTTTTTCAAAA
* * * * *
101217279 AAATCAACTCATATTGCGATAGGTAAGTTGAACCTCAAG--TCGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
* *
101217342 TTTGTCAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 TTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
101217407 CAATTTCTGTCTTTCAAAAA
130 CAATTTCTGTTTTTC-AAAA
* * * *
101217427 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
101217490 TT
66 TT
101217492 CTTCAATTTT
Statistics
Matches: 691, Mismatches: 76, Indels: 48
0.85 0.09 0.06
Matches are distributed among these distances:
132 35 0.05
134 85 0.12
146 56 0.08
147 71 0.10
148 367 0.53
149 2 0.00
150 75 0.11
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (148 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTTTG
TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTTTTTCAAAA
Found at i:101217083 original size:61 final size:62
Alignment explanation
Indices: 101216993--101217188 Score: 196
Period size: 73 Copynumber: 3.0 Consensus size: 62
101216983 TTTGTTTGTC
* *
101216993 AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
* * * * * * * *
101217054 AAAAATCAACTCATATTGTGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA----
101217119 TGTTTGT
62 ------T
101217126 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
101217189 TTCTGTCTTT
Statistics
Matches: 105, Mismatches: 18, Indels: 22
0.72 0.12 0.15
Matches are distributed among these distances:
61 51 0.49
63 1 0.01
73 53 0.50
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (62 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
Found at i:101217153 original size:134 final size:132
Alignment explanation
Indices: 101216915--101217187 Score: 429
Period size: 134 Copynumber: 2.1 Consensus size: 132
101216905 CAATTTCTTT
** * *
101216915 TTTTCAAAAAAATTTACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCTGAGATAATGTCA
1 TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAACCTCAAGACGCTGAGACAATGTCA
*
101216980 ATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
66 ATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
101217045 TA
131 TA
* * * * *
101217047 TTTTCAAAAAAATCAACTCATATTGTGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAACCTCAAGAC--GCTGAGACAATGT
*
101217112 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
64 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGA
101217177 GGTA
129 GGTA
101217181 TTTTCAA
1 TTTTCAA
101217188 TTTCTGTCTT
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 44 0.34
134 84 0.66
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (132 bp):
TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAACCTCAAGACGCTGAGACAATGTCA
ATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
TA
Found at i:101217343 original size:355 final size:356
Alignment explanation
Indices: 101216692--101217409 Score: 1296
Period size: 355 Copynumber: 2.0 Consensus size: 356
101216682 CAATTTCTGT
*
101216692 TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTT
101216757 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
66 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
*
101216822 GGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
131 GGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
* ** *
101216887 GACACGTTGAGATATTTTCAATTTCTTTTTTTCAAAAAAATTTACTCATATTGCGATAGGTGAGT
196 GACACGTTGAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGT
* *
101216952 TGAACCTCAAGACGCTGAGATAATGTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGC-AAG
261 TGAACCTCAAGACGCTGAGATAATGTCAATTTTTGTTTGTCAAAAAATCAACTCATATTACGAA-
101217015 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
325 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
*
101217047 TTTTCAAAAAAATCAACTCATATTGTGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTT
101217112 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
66 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
101217177 GGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
131 GGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
*
101217242 GACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGT
196 GACACGTTGAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGT
* * *
101217307 TGAACCTCAAGTCGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTACGAAA
261 TGAACCTCAAGACGCTGAGATAATGTCAATTTTTGTTTGTCAAAAAATCAACTCATATTACGAAA
101217372 GGTGAGTTGAGCCTCAAGACACGTTGAGGTA
326 GGTGAGTTGAGCCTCAAGACACGTTGAGGTA
101217403 TTTTCAA
1 TTTTCAA
101217410 TTTCTGTCTT
Statistics
Matches: 348, Mismatches: 13, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
355 290 0.83
356 56 0.16
357 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (356 bp):
TTTTCAAAAAAATCAACTCATATTGCGATAGATGAGTTGAGCCTCAGGACATGCTGAGGCAATTT
CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
GGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
GACACGTTGAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGT
TGAACCTCAAGACGCTGAGATAATGTCAATTTTTGTTTGTCAAAAAATCAACTCATATTACGAAA
GGTGAGTTGAGCCTCAAGACACGTTGAGGTA
Found at i:101217721 original size:92 final size:91
Alignment explanation
Indices: 101217403--101217758 Score: 388
Period size: 90 Copynumber: 3.9 Consensus size: 91
101217393 CGTTGAGGTA
* * * *
101217403 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A-AG
1 TTTTCAATTTATGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACAC
* * *
101217466 ACGCTGAGGTGTTTTCCA--T-TTTTGT
64 ACGCTGAGGTATTTTCAATTTCTTTTTT
* * * * ** *
101217491 TCTTCAATTTTTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACA
* *
101217556 CGCTGAGGTATTTTCAAATTC---TAT
65 CGCTGAGGTATTTTCAATTTCTTTTTT
* *
101217580 TTTTCAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAGA
1 TTTTC-AATTTATG-TTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACA
*
101217644 CACGCTGAGATATTTTCAATTTCTTTTTT
63 CACGCTGAGGTATTTTCAATTTCTTTTTT
101217673 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-CA
*
101217738 CACGCCGAGGTATTTTCAATT
63 CACGCTGAGGTATTTTCAATT
101217759 GATTTTTATT
Statistics
Matches: 227, Mismatches: 26, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
87 37 0.16
88 17 0.07
89 27 0.12
90 65 0.29
91 1 0.00
92 49 0.22
93 11 0.05
94 20 0.09
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (91 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACAC
GCTGAGGTATTTTCAATTTCTTTTTT
Found at i:101217765 original size:92 final size:88
Alignment explanation
Indices: 101217403--101217919 Score: 394
Period size: 87 Copynumber: 5.6 Consensus size: 88
101217393 CGTTGAGGTA
* *
101217403 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC--A-A
1 TTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACA
* * *
101217465 GACGCTGAGGTGTTTTCCATT-TTTGT
63 CACGCTGAGGTATTTTCAATTATTT-T
* * * * *
101217491 TCTTCAATTTTTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTC
1 TTTTCAA-TTTTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
101217555 ACGCTGAGGTATTTTCAA--ATTCTAT
64 ACGCTGAGGTATTTTCAATTATT-T-T
* *
101217580 TTTTCAAATTTTGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCA-AGA
1 TTTTC-AATTTTG-TTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACA
* *
101217644 CACGCTGAGATATTTTCAATTTCTTTTTT
63 CACGCTGAGGTATTTTCAA--T-TATTTT
101217673 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CA
*
101217738 CACGCCGAGGTATTTTCAATTGATTTT
63 CACGCTGAGGTATTTTCAATT-ATTTT
** *
101217765 TATTTTTATTTT-TTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGA
1 T-TTTCAATTTTGTTTTC-A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * ** * * *
101217829 GCCTCGGGTCACATACCGAGGTATTTTCAA-AATATGT
53 GCCTC-AGACACACGCTGAGGTATTTTCAATTAT-TTT
* *
101217866 TTTACAAATTTTGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
101217920 TGGCTCACGT
Statistics
Matches: 355, Mismatches: 37, Indels: 75
0.76 0.08 0.16
Matches are distributed among these distances:
87 72 0.20
88 16 0.05
89 33 0.09
90 61 0.17
91 5 0.01
92 56 0.16
93 17 0.05
94 20 0.06
95 2 0.01
100 4 0.01
101 8 0.02
102 60 0.17
103 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (88 bp):
TTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACAC
GCTGAGGTATTTTCAATTATTTT
Found at i:101217848 original size:102 final size:103
Alignment explanation
Indices: 101217669--101217858 Score: 303
Period size: 102 Copynumber: 1.8 Consensus size: 103
101217659 TCAATTTCTT
*
101217669 TTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
*
101217734 ATCACACGCCGAGGTATTTTCAATTGATTTTTATTTTTA
65 ATCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
*
101217773 TTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
* *
101217836 GTCACATACCGAGGTATTTTCAA
65 ATCACACACCGAGGTATTTTCAA
101217859 AATATGTTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
102 58 0.73
104 18 0.22
105 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (103 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
Found at i:101217954 original size:87 final size:88
Alignment explanation
Indices: 101217795--101218023 Score: 223
Period size: 87 Copynumber: 2.6 Consensus size: 88
101217785 TTATGCTTTG
* * * *
101217795 CAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAA
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAA
101217860 ATATGTTTTACAAAT-TTT-GTTTT
66 ATATGTTTT--AAATGTTTAGTTTT
* * * * **
101217883 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAGT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAA
* * *
101217947 TTCTGTTTTTAATGTTTAGTTTT
66 ATATGTTTTAAATGTTTAGTTTT
* * * * * * *
101217970 CAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAG
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGAG
101218024 TAAAGAATAA
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 68 0.59
88 41 0.36
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (88 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAA
ATATGTTTTAAATGTTTAGTTTT
Found at i:101218631 original size:18 final size:18
Alignment explanation
Indices: 101218608--101218661 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
101218598 TCACCACCAA
101218608 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
101218626 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
101218638 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
101218656 CTCCAC
1 CTCCAC
101218662 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:101218635 original size:30 final size:30
Alignment explanation
Indices: 101218599--101218725 Score: 227
Period size: 30 Copynumber: 4.2 Consensus size: 30
101218589 TAGCCTTTGT
*
101218599 CACCACCAACTCCACTAGCCACACTTGCTC
1 CACCACCTACTCCACTAGCCACACTTGCTC
101218629 CACCACCTACTCCACTAGCCACACTTGCTC
1 CACCACCTACTCCACTAGCCACACTTGCTC
*
101218659 CACCACCTACTCCATTAGCCACACTTGCTC
1 CACCACCTACTCCACTAGCCACACTTGCTC
*
101218689 CACCACCTACTCCATTAGCCACACTTGCTC
1 CACCACCTACTCCACTAGCCACACTTGCTC
101218719 CACCACC
1 CACCACC
101218726 ACTTGTACCT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 95 1.00
ACGTcount: A:0.24, C:0.50, G:0.06, T:0.20
Consensus pattern (30 bp):
CACCACCTACTCCACTAGCCACACTTGCTC
Found at i:101219236 original size:25 final size:25
Alignment explanation
Indices: 101219208--101219413 Score: 72
Period size: 25 Copynumber: 8.4 Consensus size: 25
101219198 TTGTTATTAT
101219208 TATATTTTTAATATTATATTATATA
1 TATATTTTTAATATTATATTATATA
* **
101219233 TATATTCTTT--TAATATA-T-TAGG
1 TATATT-TTTAATATTATATTATATA
* *
101219255 TATATTCTAAAT-TCTATATTACGTATA
1 TATATTTTTAATAT-TATATTA--TATA
* ** * *
101219282 TATA-TATT-ATACAATTTTATGTA
1 TATATTTTTAATATTATATTATATA
* *
101219305 TATATCTTTAATACTATATTATTTATA
1 TATATTTTTAATATTATATTA--TATA
* * * *
101219332 TATTTTTTTACATGTTATCTTATGTA
1 TATATTTTTA-ATATTATATTATATA
*
101219358 TATA-TTTT-A-ATTATATTATGTA
1 TATATTTTTAATATTATATTATATA
* * * * *
101219380 TGTATTTTTTACACTATATTATGTA
1 TATATTTTTAATATTATATTATATA
*
101219405 CATATTTTT
1 TATATTTTT
101219414 TTATATCTAT
Statistics
Matches: 132, Mismatches: 32, Indels: 34
0.67 0.16 0.17
Matches are distributed among these distances:
21 1 0.01
22 22 0.17
23 18 0.14
24 10 0.08
25 45 0.34
26 11 0.08
27 17 0.13
28 8 0.06
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATTTTTAATATTATATTATATA
Found at i:101219414 original size:25 final size:25
Alignment explanation
Indices: 101219268--101219414 Score: 111
Period size: 25 Copynumber: 5.9 Consensus size: 25
101219258 ATTCTAAATT
* * * *
101219268 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATTTTTTACA
* * * * *
101219293 CAATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
101219318 CTATATTATTTATATATTTTTTTACA
1 CTATATTATGTATATA-TTTTTTACA
* *
101219344 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
101219368 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
101219393 CTATATTATGTACATATTTTTT
1 CTATATTATGTATATATTTTTT
101219415 TATATCTATT
Statistics
Matches: 96, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
22 14 0.15
24 6 0.06
25 57 0.59
26 6 0.06
28 13 0.14
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:101219503 original size:25 final size:24
Alignment explanation
Indices: 101219475--101219530 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101219465 GTTATATTTT
*
101219475 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
101219500 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
101219523 CACTATTA
1 CACTATTA
101219531 GTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:101220673 original size:3 final size:3
Alignment explanation
Indices: 101220665--101220811 Score: 95
Period size: 3 Copynumber: 48.0 Consensus size: 3
101220655 GAAAGAAAAT
* * * * *
101220665 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATAA ATG GT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * *
101220709 ATA ATA ATA ATA ATA ATA ATA ATA CATTA AGTT ACA ATA ATA A-A GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA ATA ATA ATA
* * * *
101220756 ATA ATA GTG ATA ATA ATA AT- ATA TTA GATA ATA ATA ATAA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA AT-A ATA ATA
101220802 AGTA ATA ATA
1 A-TA ATA ATA
101220812 CTAGATTAAA
Statistics
Matches: 110, Mismatches: 24, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
2 5 0.05
3 89 0.81
4 14 0.13
5 2 0.02
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:101220692 original size:14 final size:13
Alignment explanation
Indices: 101220661--101220700 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
101220651 AAAAGAAAGA
101220661 AAATA-TAATAAT
1 AAATAGTAATAAT
101220673 -AATAGTAATAAT
1 AAATAGTAATAAT
101220685 ACAATAGTAATAAT
1 A-AATAGTAATAAT
101220699 AA
1 AA
101220701 TAAATGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:101220758 original size:44 final size:43
Alignment explanation
Indices: 101220665--101220811 Score: 152
Period size: 44 Copynumber: 3.3 Consensus size: 43
101220655 GAAAGAAAAT
* *
101220665 ATAATAATAATAGTAATAATACAATAGTAATAATAATAAATGGTATA
1 ATAATAATAATAATAATAATACATTAGTAATAATAATAAA--G--TA
* *
101220712 ATAATAATAATAATAATAATACATTAAGTTACAATAATAAAGTA
1 ATAATAATAATAATAATAATACATT-AGTAATAATAATAAAGTA
* * *
101220756 ATAATAGTGATAATAATAATATATTAGATAATAATAATAAA-TA
1 ATAATAATAATAATAATAATACATTAG-TAATAATAATAAAGTA
*
101220799 ACAAGTAATAATA
1 ATAA-TAATAATA
101220812 CTAGATTAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
43 7 0.08
44 41 0.48
46 1 0.01
47 23 0.27
48 13 0.15
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (43 bp):
ATAATAATAATAATAATAATACATTAGTAATAATAATAAAGTA
Found at i:101221473 original size:18 final size:18
Alignment explanation
Indices: 101221450--101221487 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
101221440 AATAGGCTCT
101221450 AAAAAAAT-AAAATAACA
1 AAAAAAATGAAAATAACA
*
101221467 AAAAAAATGAAAATAATA
1 AAAAAAATGAAAATAACA
101221485 AAA
1 AAA
101221488 TTTTTATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (18 bp):
AAAAAAATGAAAATAACA
Found at i:101222499 original size:44 final size:43
Alignment explanation
Indices: 101222434--101222760 Score: 162
Period size: 44 Copynumber: 7.5 Consensus size: 43
101222424 CAGCCTATTA
* *
101222434 CCCTACTGCATAGGGGTTTAAGGGCCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGCCCATCGCCTTCGATCTGTTT
* ** ** *** * *
101222478 CCCTACTGCTTAAGAGGTTAAGATCTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTT-AGGGGTTAAGGCCCATCGCCTTCGA-TCTGTTT
* *
101222521 CCCTATTGCTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGCCCATCGCCTTCGATCTGTTT
* ** ** *** * * *
101222565 CCCTACTGCATAGAGGGTTAAGATCTGT-AAATTC-AGCCCGTTA
1 CCCTACTGCTTAG-GGGTTAAGGCCCATCGCCTTCGA-TCTGTTT
*
101222608 CCCTACTGCTTAGGTGTTTAAGGCCCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAAGGCCCATCGCCTTCGATCTGTTT
* * **** * * *
101222652 CCCTACTGCTTAGGGGGTTAAGATCTC-TAAATTTAG-CCTGTTA
1 CCCTACTGCTTA-GGGGTTAAG-GCCCATCGCCTTCGATCTGTTT
* * *
101222695 CCCTACTGCTTAGGGGTTTAAAGCCCATCACCTTCGATTTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGCCCATCGCCTTCGATCTGTTT
*
101222739 CCCTACTACTTAAGGGGTTAAG
1 CCCTACTGCTT-AGGGGTTAAG
101222761 ATCTGTAAAT
Statistics
Matches: 197, Mismatches: 70, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
42 13 0.07
43 77 0.39
44 89 0.45
45 18 0.09
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTAAGGCCCATCGCCTTCGATCTGTTT
Found at i:101222542 original size:43 final size:43
Alignment explanation
Indices: 101222472--101222803 Score: 196
Period size: 43 Copynumber: 7.7 Consensus size: 43
101222462 CGCCTTCGAT
* *
101222472 CTGTTTCCCTACTGCTTAAGAGG-TTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTTAAGATCTGTAAATTCAGC
* *** * *
101222515 CTGTTACCCTATTGCTTAGGGGTTTAAGGCCCATC-G-CCTTTGA-T
1 CTGTTACCCTACTGCTTAGGGGTTTAA-G---ATCTGTAAATTCAGC
* *
101222559 CTGTTTCCCTACTGCATAGAGGG-TTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAG-GGGTTTAAGATCTGTAAATTCAGC
* * ** ** *** *
101222602 CCGTTACCCTACTGCTTAGGTGTTTAAGGCCCATCGCCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAATTCAG-C
* * * *
101222646 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTCTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
** * ** *
101222689 CTGTTACCCTACTGCTTAGGGGTTTAAAGCCCAT-CACCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGTTT-AAGATC-TGTAAATTCAG-C
* * *
101222733 TTGTTTCCCTACTACTTAAGGGG-TTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTTAAGATCTGTAAATTCAGC
101222776 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAG
101222804 GCCCTTCGTC
Statistics
Matches: 207, Mismatches: 62, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
40 3 0.01
41 1 0.00
42 15 0.07
43 97 0.47
44 75 0.36
45 12 0.06
46 1 0.00
47 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
Found at i:101222570 original size:87 final size:87
Alignment explanation
Indices: 101222424--101222892 Score: 640
Period size: 87 Copynumber: 5.4 Consensus size: 87
101222414 TTGTAATTCC
* * *
101222424 CAGCCTATTACCCTACTGCATAGGGGTTTAAGGGCCATCGCCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
*
101222489 AAGAGGTTAAGATCTGTAAATT
66 AAGGGGTTAAGATCTGTAAATT
* * *
101222511 CAGCCTGTTACCCTATTGCTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGTTTCCCTACTGCAT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
101222576 -AGAGGGTTAAGATCTGTAAATT
66 AAG-GGGTTAAGATCTGTAAATT
* *
101222598 CAGCCCGTTACCCTACTGCTTAGGTGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
* *
101222663 AGGGGGTTAAGATCTCTAAATT
66 AAGGGGTTAAGATCTGTAAATT
* * * * *
101222685 TAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGCCCATCACCTTCGATTTGTTTCCCTACTACTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
101222750 AAGGGGTTAAGATCTGTAAATT
66 AAGGGGTTAAGATCTGTAAATT
* * * *
101222772 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTAT-GATTTG-CTCCACTACTGC
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCT-TCGATCTGTTTCC-CTACTGC
** *
101222835 TT-AGGGAGACAAGATCTATAAATT
64 TTAAGGG-GTTAAGATCTGTAAATT
* * *
101222859 TAGCCTGTTACCCTACTGCCTAGGGATTTAAGGC
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
101222893 TAGTGAATTC
Statistics
Matches: 341, Mismatches: 36, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
86 9 0.03
87 330 0.97
88 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.33
Consensus pattern (87 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
AAGGGGTTAAGATCTGTAAATT
Found at i:101230934 original size:9 final size:9
Alignment explanation
Indices: 101230920--101230953 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
101230910 CTGATGCATG
101230920 AATGCAATA
1 AATGCAATA
101230929 AATGCAATA
1 AATGCAATA
* *
101230938 AATGTAATG
1 AATGCAATA
101230947 AATGCAA
1 AATGCAA
101230954 AAAAGCGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.15, T:0.24
Consensus pattern (9 bp):
AATGCAATA
Found at i:101231167 original size:72 final size:72
Alignment explanation
Indices: 101231050--101231196 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
101231040 TGGCCCTGAT
101231050 ACTTAAGGCCTTGACCTGCCTAAGAAGCCAAGCTAGCTCTCGGCCTCGGTCTGATTCTGACTCGT
1 ACTTAAGGCCTTGACCTGCCTAAGAAGCCAAGCTAGCTCTCGGCCTCGGTCTGATTCTGACTCGT
101231115 ATTTTAA
66 ATTTTAA
101231122 ACTTAAGGCCTTGACCTGCCTAAGAAGCCAAGCTAGCTCTCGGCCTCGGTCTGATTCTGACTCGT
1 ACTTAAGGCCTTGACCTGCCTAAGAAGCCAAGCTAGCTCTCGGCCTCGGTCTGATTCTGACTCGT
101231187 ATTTTAA
66 ATTTTAA
101231194 ACT
1 ACT
101231197 CAGCACATTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (72 bp):
ACTTAAGGCCTTGACCTGCCTAAGAAGCCAAGCTAGCTCTCGGCCTCGGTCTGATTCTGACTCGT
ATTTTAA
Found at i:101234861 original size:3 final size:3
Alignment explanation
Indices: 101234847--101234960 Score: 72
Period size: 3 Copynumber: 38.7 Consensus size: 3
101234837 AAAGAAAACG
* * * *
101234847 ATA ATT ATA ATA ATA AT- ATAA ATA ATA ATA ACA GTA GTA A-A AT-
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* ** * * * *
101234890 ATA ATA ATA CTA ACG ATA ATA ATA ATA TTC ATA ATA AGA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
101234938 TTA GTA ATA ATA ATA ATG ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
101234961 GGGAATAGAA
Statistics
Matches: 82, Mismatches: 25, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
2 6 0.07
3 74 0.90
4 2 0.02
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:101235045 original size:22 final size:22
Alignment explanation
Indices: 101235019--101235060 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
101235009 AAAGTGACGG
*
101235019 TAATAACAATGACAATAATAAA
1 TAATAACAATAACAATAATAAA
* *
101235041 TAATAATAATAACGATAATA
1 TAATAACAATAACAATAATA
101235061 CAAATAATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (22 bp):
TAATAACAATAACAATAATAAA
Found at i:101235244 original size:3 final size:3
Alignment explanation
Indices: 101235236--101235424 Score: 144
Period size: 3 Copynumber: 63.0 Consensus size: 3
101235226 GAAAGAAAAT
* *
101235236 ATA ATA ATA ATA TTA ATA ATA A-A AGGT- ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA
*
101235281 ATA ATA ATA ATA ATA ATA ATA A-A AGGT- ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA
* * *
101235326 ATA ATA ATA AT- ATA ATA ATA CATTA AGTT ACA ATA ACA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA ATA ATA ATA ATA
* * * *
101235372 ATA GTG ATA ATA ATA AT- ATA TTA GATA ATA ATA A-A A-A ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
101235415 AGTA ATA ATA
1 A-TA ATA ATA
101235425 CTAGATTAAA
Statistics
Matches: 150, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
2 16 0.11
3 122 0.81
4 10 0.07
5 2 0.01
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:101236063 original size:5 final size:5
Alignment explanation
Indices: 101236053--101236091 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
101236043 TAGGCTCTAA
*
101236053 AAAAT AAAAT AAAAT AAAAT AACAAA AAAATT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAA-T AAAAT AA
101236092 TAAACCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 22 0.73
6 8 0.27
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:101237557 original size:12 final size:12
Alignment explanation
Indices: 101237540--101237582 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
101237530 TTAAAGTGAT
101237540 ATACAATATGTG
1 ATACAATATGTG
101237552 ATACAATATGTG
1 ATACAATATGTG
101237564 ATACAATATGTG
1 ATACAATATGTG
101237576 ATACAAT
1 ATACAAT
101237583 GTTATGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (12 bp):
ATACAATATGTG
Found at i:101237989 original size:6 final size:6
Alignment explanation
Indices: 101237978--101238010 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
101237968 GGGTGATGAT
101237978 ATAAAA ATAAAA ATAAAA AT-AAA AT-AAA ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAA
101238011 TGTGTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:101238093 original size:3 final size:3
Alignment explanation
Indices: 101238087--101238175 Score: 55
Period size: 3 Copynumber: 31.0 Consensus size: 3
101238077 GGAAAACAAT
* * * *
101238087 ATA ATA ATA ATA TTA GTA AT- ACA ATA ATA ATA A-A TATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
101238131 A-A ATA GA-A ATA ATA ATA GTG A-A ATA ACA A-A ATA ATA ATA ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101238173 ATA
1 ATA
101238176 GTTAAAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
2 8 0.12
3 57 0.85
4 2 0.03
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:101238156 original size:28 final size:28
Alignment explanation
Indices: 101238109--101238177 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
101238099 TTAGTAATAC
101238109 AATAATAATAA-A-T-ATAATAACAAAAT
1 AATAATAATAATAGTGA-AATAACAAAAT
101238135 AGA-AATAATAATAGTGAAATAACAAAAT
1 A-ATAATAATAATAGTGAAATAACAAAAT
101238163 AATAATAATAATAGT
1 AATAATAATAATAGT
101238178 TAAAATAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
26 9 0.24
27 3 0.08
28 25 0.66
29 1 0.03
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26
Consensus pattern (28 bp):
AATAATAATAATAGTGAAATAACAAAAT
Found at i:101239115 original size:47 final size:47
Alignment explanation
Indices: 101239064--101239157 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
101239054 AGAAAATAAA
101239064 AACGAAATAAAGAAATACCCTTTTTGAACTTGATTTCTTTGTTCGAT
1 AACGAAATAAAGAAATACCCTTTTTGAACTTGATTTCTTTGTTCGAT
101239111 AACGAAATAAAGAAATACCCTTTTTGAACTTGATTTCTTTGTTCGAT
1 AACGAAATAAAGAAATACCCTTTTTGAACTTGATTTCTTTGTTCGAT
101239158 TTCCCTCTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (47 bp):
AACGAAATAAAGAAATACCCTTTTTGAACTTGATTTCTTTGTTCGAT
Found at i:101240114 original size:12 final size:14
Alignment explanation
Indices: 101240099--101240130 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
101240089 TTGATAATAA
101240099 ATAAAA-TATAT-T
1 ATAAAATTATATAT
101240111 ATAAAATTATATAT
1 ATAAAATTATATAT
101240125 ATAAAA
1 ATAAAA
101240131 CATCAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 5 0.28
14 7 0.39
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAAAATTATATAT
Found at i:101244447 original size:12 final size:12
Alignment explanation
Indices: 101244427--101244456 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
101244417 TATGGTTAAT
*
101244427 TTCTTTAGCAGC
1 TTCTGTAGCAGC
101244439 TTCTGTAGCAGC
1 TTCTGTAGCAGC
101244451 TTCTGT
1 TTCTGT
101244457 TGTTTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (12 bp):
TTCTGTAGCAGC
Found at i:101245101 original size:91 final size:91
Alignment explanation
Indices: 101244969--101245176 Score: 274
Period size: 91 Copynumber: 2.3 Consensus size: 91
101244959 TTGATTTTAG
* *
101244969 TAAATTCATATAAGAACATTTTATTATTAACAATTTCATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTAT
* *
101245034 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* * * * *
101245061 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTTTATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
101245126 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
101245152 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
101245177 GTTATAATTA
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
91 83 0.81
92 19 0.19
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:101245225 original size:16 final size:17
Alignment explanation
Indices: 101245206--101245237 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
101245196 TTATTAAATC
101245206 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
101245222 ATATATTTAATATTAA
1 ATATATTTAATATTAA
101245238 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:101245393 original size:119 final size:120
Alignment explanation
Indices: 101245192--101245488 Score: 474
Period size: 119 Copynumber: 2.5 Consensus size: 120
101245182 AATTATTTTA
* * *
101245192 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTTTATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTTTATTT
*
101245256 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
101245312 AATTTTATTAAATTATATATTTTAATT-ATATTTATTTAATAATAATTATGTT-ATTTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTT-TATTT
*
101245375 TACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
101245431 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
101245489 ATGATTAAAT
Statistics
Matches: 161, Mismatches: 11, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
118 4 0.02
119 105 0.65
120 48 0.30
121 2 0.01
122 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTTTATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:101245436 original size:61 final size:59
Alignment explanation
Indices: 101245252--101245437 Score: 166
Period size: 61 Copynumber: 3.1 Consensus size: 59
101245242 TTAAAATTTT
101245252 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
1 ATTTTA-AGTATCATATATTATG-TTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
* * * * * * * * * * *
101245313 ATTTT-ATTA-AAT-TATATAT-TTTAATTATATTTATTTAATAATAATTATGTTATTTTA-T
1 ATTTTAAGTATCATATAT-TATGTTTGAGTAAATTCATATAAGAAT-ATTA-ATTA-TTAAGA
101245371 ATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
1 ATTTTA-AGTATCATATATTAT-GTTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
101245432 ATTTTA
1 ATTTTA
101245438 TTAAATTATA
Statistics
Matches: 92, Mismatches: 22, Indels: 22
0.68 0.16 0.16
Matches are distributed among these distances:
56 17 0.18
57 7 0.08
58 13 0.14
59 6 0.07
60 6 0.07
61 19 0.21
62 7 0.08
63 17 0.18
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.49
Consensus pattern (59 bp):
ATTTTAAGTATCATATATTATGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
Found at i:101245460 original size:18 final size:17
Alignment explanation
Indices: 101245432--101245466 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
101245422 ATTATTAAGA
*
101245432 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
101245449 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
101245467 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:101245578 original size:147 final size:143
Alignment explanation
Indices: 101245420--101245688 Score: 459
Period size: 147 Copynumber: 1.9 Consensus size: 143
101245410 ATAAGAATAT
* *
101245420 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
101245485 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAA-AATAATTT
66 AAATATGATTAAATTATTTATTATTGATA-T--T-AT-TTATTAAAATTTAAATAACAATAATTT
101245549 ACCAAAACAAATTTCTGC
126 ACCAAAACAAATTTCTGC
101245567 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
101245632 AAATATGATTAAATTATTTATTTTTGATATTATTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATATTATTTATTAAAATTTAAATAACAATAA
101245689 CAATAATCAT
Statistics
Matches: 118, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
142 18 0.15
143 7 0.06
144 1 0.01
146 1 0.01
147 91 0.77
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (143 bp):
TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATATTATTTATTAAAATTTAAATAACAATAATTTACCAA
AACAAATTTCTGC
Found at i:101245614 original size:16 final size:17
Alignment explanation
Indices: 101245579--101245613 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
101245569 ATTATTAAGA
101245579 ATTTTATTAAAATATAT
1 ATTTTATTAAAATATAT
101245596 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
101245614 TAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:101245818 original size:44 final size:45
Alignment explanation
Indices: 101245769--101245863 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
101245759 TTACACCTCT
* *
101245769 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
101245813 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
101245858 ATTACA
1 ATTACA
101245864 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:101245863 original size:16 final size:16
Alignment explanation
Indices: 101245844--101245895 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
101245834 GATTTGCTAT
* *
101245844 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
101245860 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
101245876 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
101245892 TACA
1 TACA
101245896 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:101248139 original size:127 final size:127
Alignment explanation
Indices: 101247832--101248144 Score: 466
Period size: 127 Copynumber: 2.5 Consensus size: 127
101247822 GAAAGTAATA
* * * *
101247832 TTTAATGTTTGGAAATTTGGGGAATCGTGCCCTATCGTGCTGGATTTTGATTTCCCGTTTGTTCA
1 TTTAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTTCCGTTTGTTCA
* *
101247897 AAATAATCGAATATTCTTTTAGAATTTCACTCGTGTTTCCCAAATTTTAAAACAAGGCAATG
66 AAATAATCGAATATTCATTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGGCAATG
* * *
101247959 TTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCAATTTTCTGTTTGTTCA
1 TTTAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTTCCGTTTGTTCA
* * **
101248024 AAATAATCGAATATTCAATTT-GAATTTCACTCGTGTTTTCTAAATTCTAAAGTAAGGCAATG
66 AAATAATCGAATATTC-ATTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGGCAATG
* * *
101248086 TTTATTGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTTTCGTT
1 TTTAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTTCCGTT
101248145 GGGCTAAATA
Statistics
Matches: 166, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
127 163 0.98
128 3 0.02
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (127 bp):
TTTAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTTCCGTTTGTTCA
AAATAATCGAATATTCATTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGGCAATG
Found at i:101256868 original size:53 final size:53
Alignment explanation
Indices: 101256727--101256877 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
101256717 ATAAGTACGC
* **
101256727 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
101256780 CCGTATAAGACCATAGCTAGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
101256833 CCGTATAAGACTAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
101256878 ACTGTGTAAG
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.01
53 78 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:101271465 original size:36 final size:36
Alignment explanation
Indices: 101271411--101271481 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
101271401 TATGCTTTGG
* *
101271411 TTATTTCACTATTATATTACTACTATTTTGTTGTTC
1 TTATTTCAATATTATATTACTACTATTTTATTGTTC
* * **
101271447 TTATTTGAATATTGTATTACTTTTATTTTATTGTT
1 TTATTTCAATATTATATTACTACTATTTTATTGTT
101271482 AATTTTACCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.62
Consensus pattern (36 bp):
TTATTTCAATATTATATTACTACTATTTTATTGTTC
Found at i:101281285 original size:28 final size:28
Alignment explanation
Indices: 101281254--101281316 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
101281244 TCCCATATTA
101281254 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
101281282 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
101281310 ATGGGGT
1 ATGGGGT
101281317 TAATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:101283601 original size:14 final size:14
Alignment explanation
Indices: 101283572--101283600 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
101283562 GTGATAGACC
101283572 TTCTTTTTCTTTTT
1 TTCTTTTTCTTTTT
101283586 TTCTTTTT-TTTTT
1 TTCTTTTTCTTTTT
101283599 TT
1 TT
101283601 TTTATGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTCTTTTTCTTTTT
Found at i:101286235 original size:46 final size:46
Alignment explanation
Indices: 101286168--101286265 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
101286158 TAAATATATC
101286168 CTTGTTGAACTTGTTACCTGCAAACTTTATATATACCTTCTCCCCT
1 CTTGTTGAACTTGTTACCTGCAAACTTTATATATACCTTCTCCCCT
*
101286214 CTTGTTGAATTTGTTACCTGCAAACTTTATATATACCTTCTCCCCT
1 CTTGTTGAACTTGTTACCTGCAAACTTTATATATACCTTCTCCCCT
101286260 CTTGTT
1 CTTGTT
101286266 CTAACATGAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.44
Consensus pattern (46 bp):
CTTGTTGAACTTGTTACCTGCAAACTTTATATATACCTTCTCCCCT
Found at i:101286417 original size:81 final size:81
Alignment explanation
Indices: 101286282--101286448 Score: 334
Period size: 81 Copynumber: 2.1 Consensus size: 81
101286272 TGAAAGAACT
101286282 GTTTTCTTTCCTTTAGAATCACATGGTTTACTTTGGTTCTATGATCCAAAGGCTGTATACCCATT
1 GTTTTCTTTCCTTTAGAATCACATGGTTTACTTTGGTTCTATGATCCAAAGGCTGTATACCCATT
101286347 TGTTTTTGGGAAATTC
66 TGTTTTTGGGAAATTC
101286363 GTTTTCTTTCCTTTAGAATCACATGGTTTACTTTGGTTCTATGATCCAAAGGCTGTATACCCATT
1 GTTTTCTTTCCTTTAGAATCACATGGTTTACTTTGGTTCTATGATCCAAAGGCTGTATACCCATT
101286428 TGTTTTTGGGAAATTC
66 TGTTTTTGGGAAATTC
101286444 GTTTT
1 GTTTT
101286449 TCCTTGTAGC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (81 bp):
GTTTTCTTTCCTTTAGAATCACATGGTTTACTTTGGTTCTATGATCCAAAGGCTGTATACCCATT
TGTTTTTGGGAAATTC
Found at i:101286946 original size:144 final size:144
Alignment explanation
Indices: 101286686--101286973 Score: 567
Period size: 144 Copynumber: 2.0 Consensus size: 144
101286676 TCCATGAGAT
101286686 ATTCTAATGTTTGATAAATTTATATACTTCTGGCTAGATGTTGCAAAAGGTATGTATTCATTGAA
1 ATTCTAATGTTTGATAAATTTATATACTTCTGGCTAGATGTTGCAAAAGGTATGTATTCATTGAA
101286751 AGACTGTTTATTTTAACAGGCAACAGGATGTTAGAGCTACTGAAATTGACAAAGTGGATATGCAT
66 AGACTGTTTATTTTAACAGGCAACAGGATGTTAGAGCTACTGAAATTGACAAAGTGGATATGCAT
101286816 TTGTCATTTCGTCC
131 TTGTCATTTCGTCC
*
101286830 ATTCTAATGTTTGATAAATTTATGTACTTCTGGCTAGATGTTGCAAAAGGTATGTATTCATTGAA
1 ATTCTAATGTTTGATAAATTTATATACTTCTGGCTAGATGTTGCAAAAGGTATGTATTCATTGAA
101286895 AGACTGTTTATTTTAACAGGCAACAGGATGTTAGAGCTACTGAAATTGACAAAGTGGATATGCAT
66 AGACTGTTTATTTTAACAGGCAACAGGATGTTAGAGCTACTGAAATTGACAAAGTGGATATGCAT
101286960 TTGTCATTTCGTCC
131 TTGTCATTTCGTCC
101286974 TGGCGATATT
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 143 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (144 bp):
ATTCTAATGTTTGATAAATTTATATACTTCTGGCTAGATGTTGCAAAAGGTATGTATTCATTGAA
AGACTGTTTATTTTAACAGGCAACAGGATGTTAGAGCTACTGAAATTGACAAAGTGGATATGCAT
TTGTCATTTCGTCC
Found at i:101289601 original size:23 final size:23
Alignment explanation
Indices: 101289575--101289626 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
101289565 AAAATTGATG
101289575 GTGTTTGTGGGTGTTGTAAATGT
1 GTGTTTGTGGGTGTTGTAAATGT
101289598 GTGTTTGTGGGTGTTGTAAATGT
1 GTGTTTGTGGGTGTTGTAAATGT
101289621 GTGTTT
1 GTGTTT
101289627 TAGTTGAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (23 bp):
GTGTTTGTGGGTGTTGTAAATGT
Found at i:101290157 original size:27 final size:27
Alignment explanation
Indices: 101290126--101290180 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
101290116 CTGGGTTGCC
101290126 TGTGATCTTGTATTCAGACTGTGCCTA
1 TGTGATCTTGTATTCAGACTGTGCCTA
101290153 TGTGATCTTGTATTCAGACTGTGCCTA
1 TGTGATCTTGTATTCAGACTGTGCCTA
101290180 T
1 T
101290181 CTACCTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
TGTGATCTTGTATTCAGACTGTGCCTA
Found at i:101302553 original size:3 final size:3
Alignment explanation
Indices: 101302545--101302586 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
101302535 ACTAGTATAT
101302545 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
101302587 CTACGTTTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:101302806 original size:26 final size:26
Alignment explanation
Indices: 101302749--101302850 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 26
101302739 ATTATTATCA
*
101302749 ATTTTAAA-TATTTTACATATATTATTT
1 ATTTTAAATTATTATAC--ATATTATTT
* *
101302776 CTTTTAAACTATTATACATATTATTT
1 ATTTTAAATTATTATACATATTATTT
* **
101302802 ATTTTGAAATTTTTATATGTATCT-TTGT
1 ATTTT-AAATTATTATACATAT-TATT-T
*
101302830 ATTTTAAATTATTATATATAT
1 ATTTTAAATTATTATACATAT
101302851 ACATATTATT
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
26 13 0.21
27 35 0.56
28 14 0.23
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (26 bp):
ATTTTAAATTATTATACATATTATTT
Found at i:101303279 original size:27 final size:26
Alignment explanation
Indices: 101303237--101303332 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 26
101303227 TACTTTGTGA
101303237 ATTATTTATCTT-AATTT-ATTTAACAT
1 ATTATTTAT-TTAAATTTGATTT-ACAT
* *
101303263 ATTATTTATTTGAAATTTGCTTTATAT
1 ATTATTTATTT-AAATTTGATTTACAT
* *
101303290 ATTATTTTATTTTAAA-TTGTTTTATAT
1 ATTA-TTTA-TTTAAATTTGATTTACAT
*
101303317 TTTATTTATATTAAAT
1 ATTATTTAT-TTAAAT
101303333 CTTTTTCATA
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
25 3 0.05
26 18 0.31
27 25 0.42
28 10 0.17
29 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (26 bp):
ATTATTTATTTAAATTTGATTTACAT
Found at i:101303299 original size:28 final size:27
Alignment explanation
Indices: 101303261--101303328 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
101303251 TTTATTTAAC
101303261 ATATTA-TTTATTTGAAATTTGCTTTAT
1 ATATTATTTTATTTGAAA-TTGCTTTAT
* *
101303288 ATATTATTTTATTTTAAATTGTTTTAT
1 ATATTATTTTATTTGAAATTGCTTTAT
*
101303315 ATTTTATTTATATT
1 ATATTATTT-TATT
101303329 AAATCTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (27 bp):
ATATTATTTTATTTGAAATTGCTTTAT
Found at i:101309037 original size:53 final size:52
Alignment explanation
Indices: 101308975--101309097 Score: 140
Period size: 52 Copynumber: 2.3 Consensus size: 52
101308965 ATGCCATTTT
* *
101308975 CCAGATATGGTCTTCTA-CGGAATCACATTATCACATCACACCGACGCCATAGC
1 CCAGCTATGGTCTTATATCGGAA-CACATT-TCACATCACACCGACGCCATAGC
* * * ** * *
101309028 CCAGCTATGGTTTTATATGGGAACACGTTTCACATTGCATCGATGCCATAGC
1 CCAGCTATGGTCTTATATCGGAACACATTTCACATCACACCGACGCCATAGC
101309080 CCAGCTATGGTCTTATAT
1 CCAGCTATGGTCTTATAT
101309098 GGGTGTACAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
52 36 0.61
53 19 0.32
54 4 0.07
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (52 bp):
CCAGCTATGGTCTTATATCGGAACACATTTCACATCACACCGACGCCATAGC
Found at i:101316164 original size:52 final size:54
Alignment explanation
Indices: 101316046--101316183 Score: 165
Period size: 52 Copynumber: 2.6 Consensus size: 54
101316036 CACATATAAT
* * * * *
101316046 ACCGATGCCATATCCTAGATATGGTCTTATAC-AGAATCACATTATCACATCAC
1 ACCGACGCCATAGCCCAGCTATGGTCTTATACGAGAATCACAGTATCACATCAC
* * *
101316099 ACCGACGCTATAGCTCAGCTATGGTCTTATACGAGAA-CAC-GTATCACATTAC
1 ACCGACGCCATAGCCCAGCTATGGTCTTATACGAGAATCACAGTATCACATCAC
* *
101316151 ACCTATGCCATAGCCCAGCTATGGTCTTATACG
1 ACCGACGCCATAGCCCAGCTATGGTCTTATACG
101316184 GGTGCACATG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 39 0.54
53 29 0.40
54 4 0.06
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
ACCGACGCCATAGCCCAGCTATGGTCTTATACGAGAATCACAGTATCACATCAC
Found at i:101329311 original size:7 final size:7
Alignment explanation
Indices: 101329299--101329323 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
101329289 GTTTTGAAAG
101329299 GAAAACA
1 GAAAACA
101329306 GAAAACA
1 GAAAACA
101329313 GAAAACA
1 GAAAACA
101329320 GAAA
1 GAAA
101329324 TTCATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.12, G:0.16, T:0.00
Consensus pattern (7 bp):
GAAAACA
Found at i:101331123 original size:18 final size:17
Alignment explanation
Indices: 101331102--101331136 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
101331092 TTATTATTAA
*
101331102 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
101331120 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
101331137 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:101331190 original size:157 final size:157
Alignment explanation
Indices: 101330996--101331303 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
101330986 CCCTTAGCAT
*
101330996 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* * *
101331061 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTTTAATTAAAATATATAA
101331126 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
*
101331153 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
*
101331218 TAATAAATAATTTAATCATATTTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTTTAATTAAAATATATAA
101331283 TTTAATAAAATTCTTAATAAT
131 TTTAATAAAATTCTTAATAAT
101331304 CAATATTCTT
Statistics
Matches: 145, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTTTAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:101331375 original size:120 final size:120
Alignment explanation
Indices: 101331239--101331556 Score: 627
Period size: 120 Copynumber: 2.6 Consensus size: 120
101331229 TTAATCATAT
101331239 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
101331304 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
101331359 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
101331424 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
101331479 TTTAACATAATTATTATTAAAAATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
101331544 CAATATTCTTATA
66 CAATATTCTTATA
101331557 ACAAAAATTC
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 197 1.00
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:101331411 original size:59 final size:55
Alignment explanation
Indices: 101331219--101331539 Score: 206
Period size: 55 Copynumber: 5.5 Consensus size: 55
101331209 TAATATCAAT
* * *
101331219 AATAAATAATTTAATCATA-TTTTAACATAATTATTATTAAAAACATTTTAATTAA
1 AATATATAATTTAATAAAATTTTTAACATAATTATTATTAAAAA-ATTTTAATTAA
* * * * *
101331274 AATATATAATTTAATAAAATTCTTAATAATCAA-TATTCTTATATAAA-TTT-ACTAA
1 AATATATAATTTAATAAAATTTTTAA-CAT-AATTATTATTA-AAAAATTTTAATTAA
*
101331329 AATCATAATATATGATACTATAAAATATAATTTAACATAATTATTATTAAAAACATTTTAATTAA
1 AAT-AT-ATA-AT-TTA--ATAAAAT-T--TTTAACATAATTATTATTAAAAA-ATTTTAATTAA
* * * * *
101331394 AATATATAATTTAATAAAATTCTTAATAATCAA-TATTCTTATATAAA-TTT-ACTAA
1 AATATATAATTTAATAAAATTTTTAA-CAT-AATTATTATTA-AAAAATTTTAATTAA
*
101331449 AATCATAATATATGATACTATAAAATATAATTTAACATAATTATTATTAAAAATATTTTAATTAA
1 AAT-AT-ATA-AT-TTA--ATAAAAT-T--TTTAACATAATTATTATTAAAAA-ATTTTAATTAA
*
101331514 AATATATAATTTAATAAAATTCTTAA
1 AATATATAATTTAATAAAATTTTTAA
101331540 TAATCAATAT
Statistics
Matches: 205, Mismatches: 28, Indels: 65
0.69 0.09 0.22
Matches are distributed among these distances:
55 30 0.15
56 23 0.11
57 26 0.13
58 16 0.08
59 18 0.09
61 18 0.09
62 16 0.08
63 26 0.13
64 18 0.09
65 14 0.07
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (55 bp):
AATATATAATTTAATAAAATTTTTAACATAATTATTATTAAAAAATTTTAATTAA
Found at i:101340368 original size:22 final size:21
Alignment explanation
Indices: 101340343--101340396 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
101340333 GTTCGTGTAA
101340343 TTAAATTGTATATTTATATGTT
1 TTAAATTGTATA-TTATATGTT
*
101340365 TTAAATTG-A-ATTATTTGTT
1 TTAAATTGTATATTATATGTT
*
101340384 TGTGAATTGTATA
1 T-TAAATTGTATA
101340397 ATTGCCATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 9 0.33
20 7 0.26
21 2 0.07
22 9 0.33
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (21 bp):
TTAAATTGTATATTATATGTT
Found at i:101348345 original size:36 final size:36
Alignment explanation
Indices: 101348297--101348376 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
101348287 GGGCTGAGAG
* *
101348297 AGAGAAAG-TGATCAAAGCAGCAGTGATGAATATTC
1 AGAGGAAGATGATCAAAGCAACAGTGATGAATATTC
*
101348332 AGAGGAAGATGATCAAAGCAACAGTGATGATTATTC
1 AGAGGAAGATGATCAAAGCAACAGTGATGAATATTC
101348368 AGAGGAAGA
1 AGAGGAAGA
101348377 AAATTAGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 7 0.17
36 34 0.83
ACGTcount: A:0.44, C:0.10, G:0.28, T:0.19
Consensus pattern (36 bp):
AGAGGAAGATGATCAAAGCAACAGTGATGAATATTC
Found at i:101349692 original size:3 final size:3
Alignment explanation
Indices: 101349686--101349751 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
101349676 AAGAAGAAGA
101349686 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
101349734 AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG
101349752 TGGCATTGGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:101349895 original size:3 final size:3
Alignment explanation
Indices: 101349882--101349912 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
101349872 AAGGAAATAA
101349882 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
101349913 GTTGTTGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:101350506 original size:12 final size:13
Alignment explanation
Indices: 101350489--101350564 Score: 50
Period size: 12 Copynumber: 5.7 Consensus size: 13
101350479 ATTATATACT
*
101350489 AAAATAATATAA-
1 AAAATAAAATAAG
101350501 AAAATAAAATAAG
1 AAAATAAAATAAG
101350514 AAAATAGAATATTTTAA-
1 AAAATA-AA-A---TAAG
**
101350531 AAAATAAAATCCG
1 AAAATAAAATAAG
101350544 AAAATAAAATAA-
1 AAAATAAAATAAG
*
101350556 ATAATAAAA
1 AAAATAAAA
101350565 AAGGGCCAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
12 20 0.39
13 16 0.31
14 2 0.04
15 2 0.04
16 2 0.04
17 6 0.12
18 3 0.06
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (13 bp):
AAAATAAAATAAG
Found at i:101350517 original size:25 final size:25
Alignment explanation
Indices: 101350489--101350564 Score: 71
Period size: 30 Copynumber: 2.8 Consensus size: 25
101350479 ATTATATACT
101350489 AAAATAATATAAAAAATAAAATAAG
1 AAAATAATATAAAAAATAAAATAAG
**
101350514 AAAATAGAATATTTTAAAAAATAAAATCCG
1 AAAAT--AATA---TAAAAAATAAAATAAG
* *
101350544 AAAATAAAATAAATAATAAAA
1 AAAATAATATAAAAAATAAAA
101350565 AAGGGCCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
25 16 0.38
27 4 0.10
28 3 0.07
30 19 0.45
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATAAG
Found at i:101350532 original size:30 final size:30
Alignment explanation
Indices: 101350488--101350554 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
101350478 CATTATATAC
* *
101350488 TAAAATAATATAAAAAATAAAATAAGAAAA
1 TAAAATATTTTAAAAAATAAAATAAGAAAA
* **
101350518 TAGAATATTTTAAAAAATAAAATCCGAAAA
1 TAAAATATTTTAAAAAATAAAATAAGAAAA
101350548 TAAAATA
1 TAAAATA
101350555 AATAATAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.69, C:0.03, G:0.04, T:0.24
Consensus pattern (30 bp):
TAAAATATTTTAAAAAATAAAATAAGAAAA
Found at i:101350667 original size:25 final size:25
Alignment explanation
Indices: 101350639--101350709 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 25
101350629 ATTGTGTACT
101350639 AAAATAATATAAAAAATAAAATAC-G
1 AAAATAATATAAAAAATAAAAT-CTG
101350664 AAAATAATATATTTTAAAATATAAAATCTG
1 AAAATAATATA----AAAA-ATAAAATCTG
*
101350694 AAAATAAAATAAAAAA
1 AAAATAATATAAAAAA
101350710 AAACAAAGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
25 12 0.31
26 4 0.10
29 5 0.13
30 18 0.46
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATCTG
Found at i:101350818 original size:25 final size:25
Alignment explanation
Indices: 101350790--101350865 Score: 71
Period size: 30 Copynumber: 2.8 Consensus size: 25
101350780 ATTATGTACT
*
101350790 AAAATAATATAAAAAATAAAATATG
1 AAAATAATATAAAAAATAAAATACG
*
101350815 AAAATAGTATATTTTAAAAAATAAAATCCG
1 AAAATA--ATA---TAAAAAATAAAATACG
* *
101350845 AAAATAAAATAAATAATAAAA
1 AAAATAATATAAAAAATAAAA
101350866 ACAAAGGGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
25 17 0.40
27 3 0.07
28 2 0.05
30 20 0.48
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATACG
Found at i:101351363 original size:154 final size:155
Alignment explanation
Indices: 101350334--101351005 Score: 892
Period size: 150 Copynumber: 4.4 Consensus size: 155
101350324 GCTGATTTTT
* * * * *
101350334 TACTAAAAAAATAT-AAAAATAAAATGCAAAAATAGTTTATTTTAAAAAATAAAATACAAAAAT-
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
* * *
101350397 -AA-AAA-AATAAGAACAAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACAC
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAAAG-TTTTTTACTAAATTAATATAAAAAAACAC
*
101350459 TAAAATAATACATTTGAAACATTATA
130 TAAAATAATACATTTGAAACATTATG
* * *
101350485 TACTAAAATAATATAAAAAATAAAATA-AGAAAATAGAATATTTTAAAAAATAAAATCCGAAAAT
1 TACTAAAATAATATAAAAAATAAAATACA-AAAATAGTATATTTTAAAAAATAATATCCAAAAAT
*
101350549 AAAATAAATAAT--AAA-AAAGGGCCAAAA-TCAGAGTTTTTTACTAAATTAATAT-AAAAAA-A
65 AAAATAAATAATAAAAACAAAGGGCCAAAACT-AAAGTTTTTTACTAAATTAATATAAAAAAACA
* *
101350608 CTTAAATAATACATTTGAAACATTGTG
129 CTAAAATAATACATTTGAAACATTATG
* * * * **
101350635 TACTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAATATAAAATCTGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
*
101350700 AAAT-AA-AA-AAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATAT-AAAAAACACT
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAAAGTTTTTTACTAAATTAATATAAAAAAACACT
101350761 AAAATAATACATTTGAAACATTATG
131 AAAATAATACATTTGAAACATTATG
** * *
101350786 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
* * *
101350851 AAATAAATAATAAAAACAAAGGGCCAAAA-TCAAAGCTTTTTACTAAATTATTATAAAAAAAATA
66 AAATAAATAATAAAAACAAAGGGCCAAAACT-AAAGTTTTTTACTAAATTAATAT-AAAAAAACA
*
101350915 CTAAAATAATACATTTGAAATATTATG
129 CTAAAATAATACATTTGAAACATTATG
*
101350942 TACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCAAAAA
1 TACTAAAATAATAT-AAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAA
101351006 AAAGGGCCAA
Statistics
Matches: 471, Mismatches: 30, Indels: 34
0.88 0.06 0.06
Matches are distributed among these distances:
148 2 0.00
149 5 0.01
150 129 0.27
151 112 0.24
152 63 0.13
153 19 0.04
154 42 0.09
155 3 0.01
156 50 0.11
157 46 0.10
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (155 bp):
TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
AAATAAATAATAAAAACAAAGGGCCAAAACTAAAGTTTTTTACTAAATTAATATAAAAAAACACT
AAAATAATACATTTGAAACATTATG
Found at i:101351412 original size:600 final size:593
Alignment explanation
Indices: 101350411--101351603 Score: 1941
Period size: 600 Copynumber: 2.0 Consensus size: 593
101350401 AAATAAGAAC
101350411 AAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTGA
1 AAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTGA
101350476 AACATTATATACTAAAATAATATAAAAAATAAAATAAGAAAATAGAATATTTTAAAAAATAAAAT
66 AACATTATATACTAAAATAATATAAAAAATAAAATAAGAAAATAGAATATTTTAAAAAATAAAAT
* *
101350541 CCGAAAATAAAATAAATAATAAAAAAGGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
131 CCAAAAATAAAATAAATAATAAAAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAAA
* *
101350606 AACTTAAATAATACATTTGAAACATTGTGTACTAAAATAATATAAAAAATAAAATACGAAAATAA
196 AACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACAAAAATAA
* ** *
101350671 TATATTTTAAAATATAAAATCTGAAAATAAAATAAAAAAAAACAAAGGGCCAAAACTAGAGTTTT
261 TATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAAAACAAAGGGCCAAAACTAAAGTTTT
101350736 TTACTAAATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
326 TTACTAAATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
* *
101350801 AAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAA
391 AAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAA
* * *
101350866 ACAAAGGGCCAAAA-TCAAAGCTTTTTACTAAATTATTATAAAAAAAATACTAAAATAATACATT
456 ACAAAGAGCCAAAACT-AAAGCTTTTTACTAAATTAATAT-AAAAAAACACTAAAATAATACATT
* *
101350930 TGAAATATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATA
519 TAAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACAAAAATAGTATATTTTAAAAAATA
101350995 AAATCCAAAAA
583 AAATCCAAAAA
* * *
101351006 AAAGGGCCAAAACTAGAG-TTTTTTACTAAATTAATAT-AAAAAATACTAAATTAATACATTTGA
1 AAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTGA
* * *
101351069 AACATTATGTACTAAAATAATATAAAAAATAAAATACA-AAAATAGTATATTTTAAAAAATAATA
66 AACATTATATACTAAAATAATATAAAAAATAAAATA-AGAAAATAGAATATTTTAAAAAATAAAA
101351133 TCCAAAAAT-AAATAAATAATAAAAACAAAGGGCCAAAA-CTAAAGTTTTTTACTAAATTAATAT
130 TCCAAAAATAAAATAAATAAT--AAA-AAAGGGCCAAAATC-AAAGTTTTTTACTAAATTAATAT
101351196 AAAAAAA-TACTAAATTAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATAC
191 AAAAAAACT--TAAA-TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATAC
* *
101351260 AAAAATAGTATATTTTAAAAAATAATATCCAAAAATAAAATAAATAATAAAAACAAAGGGCCAAA
253 AAAAATAATATATTTTAAAAAATAAAATCCAAAAATAAAAT-AA-AA-AAAAACAAAGGGCCAAA
101351325 ACTAAAGTTTTTTACTAAATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATGTACT
315 ACTAAAGTTTTTTACTAAATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATGTACT
* *
101351390 AAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATCTGAAAATAAAAT
380 AAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAAAAT
* *
101351455 AAATAATAAAAACAAAGAGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAAACACTAAAA
445 AAATAATAAAAACAAAGAGCCAAAACTAAAGCTTTTTACTAAATTAATATAAAAAAACACTAAAA
* *
101351520 TAATATATTTAAAACATTATGTACTAAAATAATATAAAAAATAAAATACTAAAATAGTATATTTT
510 TAATACATTTAAAACATTATGTACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTT
*
101351585 AAAAAATAATATCCAAAAA
575 AAAAAATAAAATCCAAAAA
101351604 TAAAATAAAT
Statistics
Matches: 556, Mismatches: 30, Indels: 21
0.92 0.05 0.03
Matches are distributed among these distances:
592 11 0.02
593 91 0.16
594 25 0.04
595 58 0.10
596 4 0.01
597 83 0.15
598 49 0.09
599 48 0.09
600 186 0.33
601 1 0.00
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (593 bp):
AAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTGA
AACATTATATACTAAAATAATATAAAAAATAAAATAAGAAAATAGAATATTTTAAAAAATAAAAT
CCAAAAATAAAATAAATAATAAAAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAAA
AACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACAAAAATAA
TATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAAAACAAAGGGCCAAAACTAAAGTTTT
TTACTAAATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
AAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAA
ACAAAGAGCCAAAACTAAAGCTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTA
AAACATTATGTACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAA
TCCAAAAA
Found at i:101351491 original size:155 final size:154
Alignment explanation
Indices: 101350334--101351614 Score: 1849
Period size: 154 Copynumber: 8.5 Consensus size: 154
101350324 GCTGATTTTT
* * * *
101350334 TACTAAAAAAATAT-AAAAATAAAATGCAAAAATAGTTTATTTTAAAAAATAAAATAC-AAAA-A
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
* * *
101350396 TAA-AAA-AATAAGAACAAAGGGCCAAAACCAGAGTTTTTTTACTAAATTAATATAAAAAAACAC
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAGAG-TTTTTTACTAAATTAATAT-AAAAAACAC
*
101350459 TAAAATAATACATTTGAAACATTATA
129 TAAAATAATACATTTGAAACATTATG
*
101350485 TACTAAAATAATATAAAAAATAAAATA-AGAAAATAGAATATTTTAAAAAATAAAATCCGAAAAT
1 TACTAAAATAATATAAAAAATAAAATACA-AAAATAGTATATTTTAAAAAATAAAATCCGAAAAT
101350549 AAAATAAATAAT--AAA-AAAGGGCCAAAA-TCAGAGTTTTTTACTAAATTAATATAAAAAA-AC
65 AAAATAAATAATAAAAACAAAGGGCCAAAACT-AGAGTTTTTTACTAAATTAATATAAAAAACAC
* *
101350609 TTAAATAATACATTTGAAACATTGTG
129 TAAAATAATACATTTGAAACATTATG
* * * *
101350635 TACTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAATATAAAATCTGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
101350700 AAAT-AA-AA-AAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAACACTA
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAACACTA
101350762 AAATAATACATTTGAAACATTATG
131 AAATAATACATTTGAAACATTATG
**
101350786 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
* * * *
101350851 AAATAAATAATAAAAACAAAGGGCCAAAA-TCAAAGCTTTTTACTAAATTATTATAAAAAAAATA
66 AAATAAATAATAAAAACAAAGGGCCAAAACT-AGAGTTTTTTACTAAATTA--ATATAAAAAACA
*
101350915 CTAAAATAATACATTTGAAATATTATG
128 CTAAAATAATACATTTGAAACATTATG
101350942 TACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCC------
1 TACTAAAATAATAT-AAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAAT
*
101351001 ------------AAAAA-AAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAATACT
65 AAAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAACACT
*
101351053 AAATTAATACATTTGAAACATTATG
130 AAAATAATACATTTGAAACATTATG
* *
101351078 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAAT-
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
* *
101351142 AAATAAATAATAAAAACAAAGGGCCAAAACTAAAGTTTTTTACTAAATTAATATAAAAAAATACT
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATAT-AAAAAACACT
*
101351207 AAATTAATACATTTGAAACATTATG
130 AAAATAATACATTTGAAACATTATG
* *
101351232 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
*
101351297 AAATAAATAATAAAAACAAAGGGCCAAAACTAAAGTTTTTTACTAAATTAATATAAAAAACACTA
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAACACTA
101351362 AAATAATACATTTGAAACATTATG
131 AAATAATACATTTGAAACATTATG
* * * *
101351386 TACTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATCTGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
*
101351451 AAATAAATAATAAAAACAAAGAGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAAACACT
66 AAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATAT-AAAAAACACT
* *
101351516 AAAATAATATATTTAAAACATTATG
130 AAAATAATACATTTGAAACATTATG
* * *
101351541 TACTAAAATAATATAAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAATATCCAAAAATA
1 TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
101351606 AAATAAATA
66 AAATAAATA
101351615 CCAAAATATA
Statistics
Matches: 1038, Mismatches: 50, Indels: 80
0.89 0.04 0.07
Matches are distributed among these distances:
135 43 0.04
136 50 0.05
138 29 0.03
139 6 0.01
148 2 0.00
149 5 0.00
150 129 0.12
151 112 0.11
152 63 0.06
153 59 0.06
154 285 0.27
155 160 0.15
156 53 0.05
157 42 0.04
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (154 bp):
TACTAAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
AAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAACACTA
AAATAATACATTTGAAACATTATG
Found at i:101351612 original size:55 final size:54
Alignment explanation
Indices: 101351508--101351612 Score: 129
Period size: 55 Copynumber: 1.9 Consensus size: 54
101351498 TTAATATAAA
* * * * *
101351508 AAAACACTAAAATAATATATTTAAAACATTATGTACTAAAATAATATAAAAAAT
1 AAAACACTAAAATAATATATTTAAAAAATAATATACAAAAATAAAATAAAAAAT
* * *
101351562 AAAATACTAAAATAGTATATTTTAAAAAATAATATCCAAAAATAAAATAAA
1 AAAACACTAAAATAATATA-TTTAAAAAATAATATACAAAAATAAAATAAA
101351613 TACCAAAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
54 17 0.40
55 25 0.60
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.29
Consensus pattern (54 bp):
AAAACACTAAAATAATATATTTAAAAAATAATATACAAAAATAAAATAAAAAAT
Found at i:101354566 original size:25 final size:23
Alignment explanation
Indices: 101354522--101354567 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
101354512 ATAAATTTTA
*
101354522 AAACAAAATATAAAAGTAACACG
1 AAACAAAATATAAAACTAACACG
*
101354545 AAACAAACTATATAATACTAACA
1 AAACAAA--ATATAAAACTAACA
101354568 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
25 12 0.63
ACGTcount: A:0.63, C:0.15, G:0.04, T:0.17
Consensus pattern (23 bp):
AAACAAAATATAAAACTAACACG
Done.