Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 310 of 332
Found at i:101873649 original size:25 final size:25
Alignment explanation
Indices: 101873615--101873664 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
101873605 TAAAATGCAT
101873615 ACATACATGTTTCCACCCTTTCAAC
1 ACATACATGTTTCCACCCTTTCAAC
101873640 ACATACATGTTTCCACCCTTTCAAC
1 ACATACATGTTTCCACCCTTTCAAC
101873665 CCATGGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.36, G:0.04, T:0.32
Consensus pattern (25 bp):
ACATACATGTTTCCACCCTTTCAAC
Found at i:101874704 original size:33 final size:33
Alignment explanation
Indices: 101874654--101874716 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
101874644 AAATGGACTT
* *
101874654 AATTCTTGAAAACAAAAGTATAGGGACTAACTA
1 AATTCTTAAAAACAAAAGTACAGGGACTAACTA
* *
101874687 AATTCTTAAAAATAAAAGTACAGGGGCTAA
1 AATTCTTAAAAACAAAAGTACAGGGACTAA
101874717 GTTTTAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (33 bp):
AATTCTTAAAAACAAAAGTACAGGGACTAACTA
Found at i:101878191 original size:18 final size:19
Alignment explanation
Indices: 101878165--101878216 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
101878155 AGTAAAATTT
*
101878165 ATATTAAAATCCTTGAAGG
1 ATATTAAAATCCTTGAAGC
* *
101878184 AT-TTAAAATGCTAGAAGC
1 ATATTAAAATCCTTGAAGC
*
101878202 ATATTAAAATTCTTG
1 ATATTAAAATCCTTG
101878217 GGAAATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (19 bp):
ATATTAAAATCCTTGAAGC
Found at i:101878946 original size:7 final size:7
Alignment explanation
Indices: 101878934--101878972 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
101878924 CTTTCATATT
101878934 TTCTTTG
1 TTCTTTG
101878941 TTCTTTG
1 TTCTTTG
101878948 TTCTTTG
1 TTCTTTG
101878955 TTCTTTG
1 TTCTTTG
101878962 TTCTTTG
1 TTCTTTG
101878969 TTCT
1 TTCT
101878973 CTCCATCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (7 bp):
TTCTTTG
Found at i:101879062 original size:16 final size:17
Alignment explanation
Indices: 101879043--101879079 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
101879033 ATGTGAAGAA
101879043 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
101879059 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
101879075 TATTA
1 TATTA
101879080 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:101879213 original size:8 final size:8
Alignment explanation
Indices: 101879200--101879225 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
101879190 TATAATATTT
101879200 TATATTAA
1 TATATTAA
101879208 TATATTAA
1 TATATTAA
101879216 TATATTAA
1 TATATTAA
101879224 TA
1 TA
101879226 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TATATTAA
Found at i:101879236 original size:16 final size:17
Alignment explanation
Indices: 101879173--101879237 Score: 70
Period size: 16 Copynumber: 4.1 Consensus size: 17
101879163 ATATGTATGT
101879173 TTAATAATATTTAAA-A
1 TTAATAATATTTAAATA
*
101879189 TT-ATAATATTT-TATA
1 TTAATAATATTTAAATA
101879204 TTAAT-ATA-TTAATATA
1 TTAATAATATTTAA-ATA
101879220 TTAATAAT-TTTAAATA
1 TTAATAATATTTAAATA
101879236 TT
1 TT
101879238 TAAAAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
14 3 0.07
15 15 0.37
16 17 0.41
17 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAATAATATTTAAATA
Found at i:101880514 original size:14 final size:15
Alignment explanation
Indices: 101880481--101880514 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
101880471 CAAGAACATA
101880481 AAAAAATATTATTAT
1 AAAAAATATTATTAT
101880496 AAAAAAT-TTAATTAT
1 AAAAAATATT-ATTAT
101880511 AAAA
1 AAAA
101880515 GTATAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAAATATTATTAT
Found at i:101881163 original size:5 final size:5
Alignment explanation
Indices: 101881155--101881206 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
101881145 ATTTTTATAT
** * *
101881155 TTTAA TTTAA CATAA TTTAA -TTAT TTTATT TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTA-A TTTAA TTTAA TTTAA TTTAA
101881205 TT
1 TT
101881207 CTTTTATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 3 0.08
5 31 0.79
6 5 0.13
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:101881190 original size:30 final size:29
Alignment explanation
Indices: 101881139--101881214 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 29
101881129 TTAAATTTGA
101881139 AATTTAA-TTTTTATATTTTAATTTAACAT
1 AATTTAATTTTTTAT-TTTTAATTTAACAT
**
101881168 AATTTAATTATTTTATTTTTAATTTAATTT
1 AATTTAATT-TTTTATTTTTAATTTAACAT
101881198 AATTTAATTCTTTTATT
1 AATTTAATT-TTTTATT
101881215 AATTTAGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 7 0.17
30 29 0.69
31 6 0.14
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
AATTTAATTTTTTATTTTTAATTTAACAT
Found at i:101892253 original size:19 final size:21
Alignment explanation
Indices: 101892212--101892259 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
101892202 TTAAAATTTT
101892212 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
101892233 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
101892252 AACTAAAA
1 AACTAAAA
101892260 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:101896558 original size:23 final size:24
Alignment explanation
Indices: 101896523--101896567 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
101896513 CAATTTTAAT
* *
101896523 TTTTTTTATTTTTAACATTTTTTA
1 TTTTTTTACTTTTAAAATTTTTTA
101896547 TTTTTTT-CTTTTAAAATTTTT
1 TTTTTTTACTTTTAAAATTTTT
101896568 GTGTTGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTTTACTTTTAAAATTTTTTA
Found at i:101896656 original size:8 final size:8
Alignment explanation
Indices: 101896645--101896746 Score: 86
Period size: 8 Copynumber: 12.9 Consensus size: 8
101896635 ATATTAAATA
101896645 TTAAATTT
1 TTAAATTT
*
101896653 TTAAGTTT
1 TTAAATTT
*
101896661 TT-TATTT
1 TTAAATTT
101896668 TTAAATTT
1 TTAAATTT
101896676 TTAAATTT
1 TTAAATTT
101896684 TTAAATTT
1 TTAAATTT
101896692 TT--ATTT
1 TTAAATTT
**
101896698 TTTTATTT
1 TTAAATTT
101896706 TTAAA-TT
1 TTAAATTT
**
101896713 TTATTTTT
1 TTAAATTT
101896721 TTGAATATTT
1 TT-AA-ATTT
*
101896731 ATATAATTT
1 TTA-AATTT
101896740 TTAAATT
1 TTAAATT
101896747 AACATATAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
6 6 0.08
7 10 0.13
8 46 0.61
9 8 0.11
10 5 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (8 bp):
TTAAATTT
Found at i:101896656 original size:15 final size:15
Alignment explanation
Indices: 101896638--101896714 Score: 73
Period size: 15 Copynumber: 5.1 Consensus size: 15
101896628 AATTAAAATA
*
101896638 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
* **
101896653 TTAAGTTTTTTATTT
1 TTAAATTTTAAATTT
101896668 TTAAATTTTTAAATTT
1 TTAAA-TTTTAAATTT
* *
101896684 TTAAATTTTTATTTT
1 TTAAATTTTAAATTT
* *
101896699 TTTATTTTTAAATTT
1 TTAAATTTTAAATTT
101896714 T
1 T
101896715 ATTTTTTTGA
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
15 35 0.73
16 13 0.27
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:101896671 original size:23 final size:24
Alignment explanation
Indices: 101896645--101896746 Score: 86
Period size: 23 Copynumber: 4.3 Consensus size: 24
101896635 ATATTAAATA
* *
101896645 TTAAATTTTTAAGTTTTT-TATTT
1 TTAAATTTTTAAATTTTTAAATTT
101896668 TTAAATTTTTAAATTTTTAAATTT
1 TTAAATTTTTAAATTTTTAAATTT
**
101896692 TT--ATTTTTTTATTTTTAAA-TT
1 TTAAATTTTTAAATTTTTAAATTT
** *
101896713 TTATTTTTTTGAATATTTATATAATTT
1 TTAAATTTTT-AA-ATTTTTA-AATTT
101896740 TTAAATT
1 TTAAATT
101896747 AACATATAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.06
22 15 0.24
23 22 0.35
24 6 0.10
25 6 0.10
26 2 0.03
27 7 0.11
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
TTAAATTTTTAAATTTTTAAATTT
Found at i:101896681 original size:38 final size:38
Alignment explanation
Indices: 101896638--101896714 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
101896628 AATTAAAATA
101896638 TTAAA-TATTAAATTTTTAAGTTTTTTATTTTTAAATTT
1 TTAAATTATTAAATTTTT-AGTTTTTTATTTTTAAATTT
* *
101896676 TTAAATTTTTAAATTTTTATTTTTTTATTTTTAAATTT
1 TTAAATTATTAAATTTTTAGTTTTTTATTTTTAAATTT
101896714 T
1 T
101896715 ATTTTTTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 25 0.69
39 11 0.31
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (38 bp):
TTAAATTATTAAATTTTTAGTTTTTTATTTTTAAATTT
Found at i:101896705 original size:22 final size:21
Alignment explanation
Indices: 101896680--101896722 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
101896670 AAATTTTTAA
101896680 ATTTTTAAATTTTTATTTTTTT
1 ATTTTTAAA-TTTTATTTTTTT
101896702 ATTTTTAAATTTTATTTTTTT
1 ATTTTTAAATTTTATTTTTTT
101896723 GAATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (21 bp):
ATTTTTAAATTTTATTTTTTT
Found at i:101896706 original size:30 final size:31
Alignment explanation
Indices: 101896645--101896714 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
101896635 ATATTAAATA
*
101896645 TTAAATTTTTAAGTTTTTTATTTTTAAATTT
1 TTAAATTTTTAAGATTTTTATTTTTAAATTT
**
101896676 TTAAATTTTTAA-ATTTTTATTTTTTTATTT
1 TTAAATTTTTAAGATTTTTATTTTTAAATTT
101896706 TTAAATTTT
1 TTAAATTTT
101896715 ATTTTTTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 24 0.67
31 12 0.33
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (31 bp):
TTAAATTTTTAAGATTTTTATTTTTAAATTT
Found at i:101897156 original size:21 final size:21
Alignment explanation
Indices: 101897132--101897174 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
101897122 CACTAAAAAT
* *
101897132 TAAACCCTGAATCTTAAACCA
1 TAAACCCTAAATCCTAAACCA
*
101897153 TAAACCCTAAATCCTAGACCA
1 TAAACCCTAAATCCTAAACCA
101897174 T
1 T
101897175 GAACATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.30, G:0.05, T:0.23
Consensus pattern (21 bp):
TAAACCCTAAATCCTAAACCA
Found at i:101897274 original size:14 final size:14
Alignment explanation
Indices: 101897220--101897280 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
101897210 TTTTTTAGAT
*
101897220 TTTAGGGTTTACAA
1 TTTAGGGTTTATAA
* *
101897234 TTTAAGAGTTTATGA
1 TTT-AGGGTTTATAA
* *
101897249 TTTATGGTTTATAG
1 TTTAGGGTTTATAA
101897263 TTTAGGGTTTATAA
1 TTTAGGGTTTATAA
101897277 TTTA
1 TTTA
101897281 CGATCTATAG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 26 0.70
15 11 0.30
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATAA
Found at i:101897329 original size:27 final size:29
Alignment explanation
Indices: 101897290--101897347 Score: 84
Period size: 27 Copynumber: 2.0 Consensus size: 29
101897280 ACGATCTATA
101897290 GCTTATGGGTTTAGAGGTT-AGTTTTAAG
1 GCTTATGGGTTTAGAGGTTGAGTTTTAAG
*
101897318 GCTTA-GGGTTTAGGGGTTGGAGTTTTAAG
1 GCTTATGGGTTTAGAGGTT-GAGTTTTAAG
101897347 G
1 G
101897348 GTTTATGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 12 0.44
28 5 0.19
29 10 0.37
ACGTcount: A:0.19, C:0.03, G:0.38, T:0.40
Consensus pattern (29 bp):
GCTTATGGGTTTAGAGGTTGAGTTTTAAG
Found at i:101897623 original size:41 final size:40
Alignment explanation
Indices: 101897578--101897793 Score: 272
Period size: 41 Copynumber: 5.3 Consensus size: 40
101897568 TTACATGACT
* * *
101897578 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGTTCTAGTC
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCT-GTC
*
101897619 TTTAGCGGCGTTTCACCAAAAGTGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCT-GTC
*
101897660 TTTAGCGTCGTTTCACCAAAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCT-GTC
* *
101897701 TTTAGCGGCGTTTCACCAAAAGTGCCACTAATGCTCTGTT
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCTGTC
* * * * * *
101897741 TTTAGCGGCGTTTTAACAAAAAACG-CGCTATTGCTCTGTT
1 TTTAGCGGCG-TTTCACCAAAAGCGCCACTAATGCTCTGTC
101897781 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
101897794 TGACAAAAAT
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 35 0.22
41 120 0.76
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (40 bp):
TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCTGTC
Found at i:101897794 original size:40 final size:40
Alignment explanation
Indices: 101897577--101897825 Score: 194
Period size: 41 Copynumber: 6.1 Consensus size: 40
101897567 ATTACATGAC
* * * *
101897577 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGTTCTAGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCT-GT
* * * ** * *
101897618 CTTTAGCGGCGTTTCACCAAAAGTGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCT-GT
* * * * * * *
101897659 CTTTAGCGTCGTTTCACCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCT-GT
* * * ** * *
101897700 CTTTAGCGGCGTTTCACCAAAAGTGCCACTAATGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCTGT
101897740 TTTTAGCGGCGTTTTAACAAAAAACG-CGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAAC-AAAAACGCCGCTATTGCTCTGT
* * *
101897780 TTTTAGCGGCGTTTTGACAAAAATGCCGCTATTGCTTTGT
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCTGT
101897820 GTTTTA
1 -TTTTA
101897826 CAATTTTTGC
Statistics
Matches: 185, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 6 0.03
40 59 0.32
41 120 0.65
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAACAAAAACGCCGCTATTGCTCTGT
Found at i:101899927 original size:16 final size:16
Alignment explanation
Indices: 101899908--101899938 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101899898 CACACATATT
101899908 TTATATATTATTTTTA
1 TTATATATTATTTTTA
*
101899924 TTATTTATTATTTTT
1 TTATATATTATTTTT
101899939 TAAAACAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATATATTATTTTTA
Found at i:101907521 original size:18 final size:18
Alignment explanation
Indices: 101907500--101907541 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
101907490 AAAGATAAAA
101907500 ATAATAACA-ATAATAATG
1 ATAATAA-ATATAATAATG
*
101907518 ATAATAAATATAGTAATG
1 ATAATAAATATAATAATG
101907536 ATAATA
1 ATAATA
101907542 GTAAGAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (18 bp):
ATAATAAATATAATAATG
Found at i:101907997 original size:11 final size:9
Alignment explanation
Indices: 101907986--101908028 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
101907976 TTATAAAAAT
101907986 ATATACATA
1 ATATACATA
101907995 ATATACATAA
1 ATATACAT-A
101908005 AGTATACAT-
1 A-TATACATA
101908014 ATATACATA
1 ATATACATA
101908023 TATATA
1 -ATATA
101908029 ATACTTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.23
9 9 0.30
10 7 0.23
11 7 0.23
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.35
Consensus pattern (9 bp):
ATATACATA
Found at i:101908004 original size:23 final size:23
Alignment explanation
Indices: 101907933--101908005 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
101907923 ATGATAATAT
* * * *
101907933 TAAAAGTATGTACACAATATGCA
1 TAAAAATATATACATAATATACA
* * * **
101907956 TAATATTATATATATAATATTTA
1 TAAAAATATATACATAATATACA
101907979 TAAAAATATATACATAATATACA
1 TAAAAATATATACATAATATACA
101908002 TAAA
1 TAAA
101908006 GTATACATAT
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAAAATATATACATAATATACA
Found at i:101913021 original size:24 final size:24
Alignment explanation
Indices: 101912994--101913040 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
101912984 CATGCATTTA
101912994 CATTGCATTGCATCATTTGCATTG
1 CATTGCATTGCATCATTTGCATTG
*
101913018 CATTGTATTGCATCATTTGCATT
1 CATTGCATTGCATCATTTGCATT
101913041 AAATTTCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (24 bp):
CATTGCATTGCATCATTTGCATTG
Found at i:101915617 original size:16 final size:17
Alignment explanation
Indices: 101915596--101915630 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
101915586 TGAGATCTTC
*
101915596 AAAAAAT-AATAAAATA
1 AAAAAATAAAAAAAATA
101915612 AAAAAATAAAAAAAATA
1 AAAAAATAAAAAAAATA
101915629 AA
1 AA
101915631 TAAAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAATAAAAAAAATA
Found at i:101915619 original size:13 final size:12
Alignment explanation
Indices: 101915596--101915639 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
101915586 TGAGATCTTC
*
101915596 AAAAAATAATAA
1 AAAAAAAAATAA
101915608 AATAAAAAAATAA
1 AA-AAAAAAATAA
101915621 AAAAAATAAATAA
1 AAAAAA-AAATAA
101915634 AGAAAA
1 A-AAAA
101915640 GGAGAGGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 6 0.21
13 18 0.64
14 4 0.14
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAAAATAA
Found at i:101915623 original size:9 final size:8
Alignment explanation
Indices: 101915596--101915630 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
101915586 TGAGATCTTC
101915596 AAAAAATA
1 AAAAAATA
*
101915604 ATAAAATA
1 AAAAAATA
101915612 AAAAAATAA
1 AAAAAAT-A
101915621 AAAAAATA
1 AAAAAATA
101915629 AA
1 AA
101915631 TAAAGAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAAAATA
Found at i:101917064 original size:132 final size:131
Alignment explanation
Indices: 101916827--101918277 Score: 1880
Period size: 132 Copynumber: 11.0 Consensus size: 131
101916817 TGGGCCTATG
* * * *
101916827 AGGCTAAAATTTTAGATATTGTTTCCCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCTT
1 AGGCTAAAA-TTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
* *
101916892 AGCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAATTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
101916957 GT
130 GT
**
101916959 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAACGAATCTG
1 AGGCTAAAATTT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
* *
101917024 AGCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGAGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
101917089 GT
130 GT
101917091 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
1 AGGCTAAAATTT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
*
101917156 AGCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
*
101917221 GG
130 GT
* *
101917223 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAATGAAGCAGATCGAAGACGGTGAATCTG
1 AGGCTAAAA-TTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
* *
101917288 AGCTTCTTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
101917353 GT
130 GT
* *
101917355 AGGCTAAAATTTTAGATCTTGTTTCCCTAAAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTG
1 AGGCTAAAA-TTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
101917420 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
101917485 GT
130 GT
* *
101917487 AGGCTAAAATTTCAGATCTCGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
1 AGGCTAAAATTT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
101917552 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
101917617 GT
130 GT
* * *
101917619 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAACAGATCGAAGATGGTGAATCTG
1 AGGCTAAAATTT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
* * *
101917684 AGCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGGA
65 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
*
101917749 AT
130 GT
* **
101917751 AGGCTGAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGCGAATC
1 AGGCT-AAAATT-TAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATC
* * * *
101917815 T-AGGCTTCCTGATGTTGCAGTGAAGTAGATTTAAG-CA--AGTCCTAGCTCTCTAAAGTTGTAG
63 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAG
101917876 TGGAGT
126 TGGAGT
* * ** * * * * ***
101917882 AGGCTGAATATTGTAGATCTCGCCTCCCTAAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCT
1 AGGCT-AAAATT-TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-
* * * * *
101917947 TG-GCTTCCTGAAGATGCGGCGAAGCAGATTTAAG----CATCCTAGCTCCCTAAGGTTGTAGTG
63 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTG
101918007 GAGT
128 GAGT
* **
101918011 AGGCTGAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGCGAATC
1 AGGCT-AAAATT-TAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATC
* * * * *
101918075 T-AGGCTTCCTGATGTTGCAGTAAATCAGATTTAAG-CA--AGTCCTAGCTCTCTAAAGTTGTAG
63 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAG
101918136 TGGAGT
126 TGGAGT
** * * * * ***
101918142 AGGCTGAGGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTG-AGACAAATCAAAGACGATAAATC
1 AGGCT-AAAATT-TAGATCTTGTTTCCCTGAAGTTGCAGTGAAG-CAGATCGAAGACGGCGAATC
* * * *
101918206 TTG-GCTTCCTGAAGATGCAGCGAAGTAGATTTAAG-CA--AGTCCTAGCTCCCTAAAGTTGTAG
63 -TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAG
*
101918267 TGAAGT
126 TGGAGT
*
101918273 GGGCT
1 AGGCT
101918278 GAAGATTGTA
Statistics
Matches: 1190, Mismatches: 107, Indels: 45
0.89 0.08 0.03
Matches are distributed among these distances:
128 3 0.00
129 101 0.08
130 4 0.00
131 242 0.20
132 759 0.64
133 80 0.07
134 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (131 bp):
AGGCTAAAATTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA
GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAG
T
Found at i:101918543 original size:44 final size:44
Alignment explanation
Indices: 101918473--101919129 Score: 775
Period size: 44 Copynumber: 15.1 Consensus size: 44
101918463 CAAGACCAGA
* * * * *
101918473 CAGATTTGGCTTCTCTGTAATAGCGGAGAGCAAATCGAATATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* *
101918517 CAGATTTGGCATCTCTGTAGTGGCGGAGAGCAAATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* * * *
101918561 CAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATCAAAAATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* *
101918605 CAGATTTGGCGTTTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
*
101918649 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
101918693 CAGATTTGGCGTCTCTGT-GTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAG-TGGCGGAGAGCAGATCGAAGATAG
*
101918737 C-G---T--C-TCTGTGT--TGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* *
101918772 CAGATTTGGCGTCTTTGT-GTTGGCGGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAG-TGGCGGAGAGCAGATCGAAGATAG
* *
101918816 CAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* *
101918860 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* * *
101918904 TAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGACAA
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* * *
101918948 CAGATTTGGCATTTCTGTAGTGGCGGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* * * * *
101918992 CAGATTTGCCATCTCTGTAGTAGCGGAGAGTAGATTGAAGAT-G
1 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
* * *
101919035 ACAGATTTGGCATCTCTGT-GTTGACAGAGAGCAGATCGAAGAT-G
1 -CAGATTTGGCGTCTCTGTAG-TGGCGGAGAGCAGATCGAAGATAG
* * * * * * * * *
101919079 ACAGATTTGGAGTATCTATATTGACAGAGAGCAGATTGAAAATAA
1 -CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
101919124 CAGATT
1 CAGATT
101919130 GGTGTTCCCG
Statistics
Matches: 544, Mismatches: 54, Indels: 30
0.87 0.09 0.05
Matches are distributed among these distances:
35 25 0.05
36 1 0.00
37 6 0.01
38 1 0.00
39 1 0.00
40 1 0.00
41 1 0.00
42 6 0.01
43 2 0.00
44 500 0.92
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAG
Found at i:101918747 original size:35 final size:35
Alignment explanation
Indices: 101918701--101918772 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
101918691 AGCAGATTTG
101918701 GCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATA
1 GCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATA
101918736 GCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATA
1 GCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATA
101918771 GC
1 GC
101918773 AGATTTGGCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.38, T:0.22
Consensus pattern (35 bp):
GCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATA
Found at i:101921727 original size:131 final size:132
Alignment explanation
Indices: 101921493--101921729 Score: 287
Period size: 131 Copynumber: 1.8 Consensus size: 132
101921483 TGTAGGTATT
* *** * * *
101921493 CTTTAAAACGAAAGCGATATTCGATACTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 CTTTAAAACGAAAGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
** *
101921558 GCAATATCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCGTGTCTTCTAAAAA
66 GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCGTGTCTTCTAAAAA
101921623 TC
131 TC
* ** *
101921625 CTTTAAAACGAAGGCAATATTCGATTTTTAACAATTCG-GGAATCATGCCCTATCGAGCTGGGTT
1 CTTTAAAACGAAAGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
** * * * *
101921689 GTGATTTCTCGTTTGCTCAAAACAATCTAATATTCCTTTAG
66 GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAG
101921730 GTTTTCATTC
Statistics
Matches: 85, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
131 54 0.64
132 31 0.36
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (132 bp):
CTTTAAAACGAAAGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCGTGTCTTCTAAAAA
TC
Found at i:101921736 original size:131 final size:131
Alignment explanation
Indices: 101921493--101921770 Score: 281
Period size: 131 Copynumber: 2.1 Consensus size: 131
101921483 TGTAGGTATT
* * *** * * *
101921493 CTTTAAAACGAAAGCGATATTCGATACTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 CTTTAAAACGAAGGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
** * *
101921558 GCAATATCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCGTGTCTT-CTAAAA
66 GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATGT-TTACTAAAA
101921622 ATC
130 A-C
** *
101921625 CTTTAAAACGAAGGCAATATTCGATTTTTAACAATTCG-GGAATCATGCCCTATCGAGCTGGGTT
1 CTTTAAAACGAAGGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
** * * * * ** ** *
101921689 GTGATTTCTCGTTTGCTCAAAACAATCTAATATTCCTTTAGGTTTTCATTCATGTTTATTAAAAA
66 GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATGTTTACTAAAAA
101921754 C
131 C
101921755 CTTTCAAAACGAAGGC
1 CTTT-AAAACGAAGGC
101921771 GATGTCCGAT
Statistics
Matches: 118, Mismatches: 26, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
130 7 0.06
131 80 0.68
132 31 0.26
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (131 bp):
CTTTAAAACGAAGGCAATATTCGATACTTAACAATTCGCGGAATCATGCCCTAACGAGCTGGGTT
GCAATATCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATGTTTACTAAAAA
C
Found at i:101924730 original size:21 final size:21
Alignment explanation
Indices: 101924705--101924773 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
101924695 TATAATGATT
101924705 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
101924726 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
101924746 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
101924766 ATTATTAT
1 ATTATTAT
101924774 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:101924786 original size:15 final size:14
Alignment explanation
Indices: 101924760--101924790 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
101924750 TATGGTTTTA
101924760 TATTAGATTATTAT
1 TATTAGATTATTAT
101924774 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
101924789 TA
1 TA
101924791 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:101926395 original size:31 final size:30
Alignment explanation
Indices: 101926342--101926409 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
101926332 GTATGAACTA
101926342 AATTATGAATTTAGTTAGTATG-AGAAAAAT
1 AATTATGAATTTAGTTA-TATGAAGAAAAAT
*
101926372 GAATTATGAATTTAAGATT-TATGAAGTAAAAT
1 -AATTATGAATTT-AG-TTATATGAAGAAAAAT
101926404 AATTAT
1 AATTAT
101926410 ATATAAAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 22 0.67
32 9 0.27
33 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (30 bp):
AATTATGAATTTAGTTATATGAAGAAAAAT
Found at i:101928944 original size:127 final size:124
Alignment explanation
Indices: 101928723--101929177 Score: 489
Period size: 127 Copynumber: 3.7 Consensus size: 124
101928713 TATCGAATTT
* * * * * * * *
101928723 CCAAATACGAAACATTGCCTCATTTTAA-TTTGAGAAAACATAGATGAAACTTCAAAAGGATATT
1 CCAAATACGAAATATTGCCTCATTTTAATTTTTAAAAAAAATGGACGAAATTTCCAAAGGATATT
* *
101928787 CTGTATTTTAG-TCGGATGGAAAATTGAAGCCCAGCACGATTGGACACGACTCCCCAACTCC
66 CCGTATTTTAGCT-GAATGGAAAATTGAAGCCCAGCACGATTGG-CACGAC-CCCCAACTCC
*
101928848 CCAAATACAAAATATTGCCTCATTTTAATTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
1 CCAAATACGAAATATTGCCTCATTTTAA-TTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
* * *
101928913 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCAAGCACAATTGG---G---CACAACT-C
65 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCCAGCACGATTGGCACGACCCCCAACTCC
*
101928966 CCAAATACGAAATATTGCCTCATTTTAATTTTTAAAAAAATATGGACGAAATTTCCAAAAGATAT
1 CCAAATACGAAATATTGCCTCATTTTAATTTTTAAAAAAA-ATGGACGAAATTTCCAAAGGATAT
* * * *
101929031 TCCATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGGCACGACCTCCCAAC-CTT
65 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCCAGCACGATT-GGCACGACC-CCCAACTC-C
* * * * * *
101929093 CCAAACACGAAATATTACATCGTTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTTCAAAGGA
1 CCAAATACGAAATATTGCCTCATTTTAA--TTTTT-AAAAAAAA-TGGACGAAATTTCCAAAGGA
* *
101929158 GATTGCGTATTTTAGCTGAA
62 TATTCCGTATTTTAGCTGAA
101929178 CGAAAAATCC
Statistics
Matches: 278, Mismatches: 34, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
117 12 0.04
118 88 0.32
119 8 0.03
122 1 0.00
123 1 0.00
125 26 0.09
126 5 0.02
127 90 0.32
128 1 0.00
129 6 0.02
130 40 0.14
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (124 bp):
CCAAATACGAAATATTGCCTCATTTTAATTTTTAAAAAAAATGGACGAAATTTCCAAAGGATATT
CCGTATTTTAGCTGAATGGAAAATTGAAGCCCAGCACGATTGGCACGACCCCCAACTCC
Found at i:101928988 original size:118 final size:121
Alignment explanation
Indices: 101928723--101929177 Score: 449
Period size: 118 Copynumber: 3.7 Consensus size: 121
101928713 TATCGAATTT
* * * * * * * *
101928723 CCAAATACGAAACATTGCCTCATTTTAA--TTTGAGAAAACATAGATGAAACTTCAAAAGGATAT
1 CCAAATACGAAATATTGCCTCATTTTAATTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
* * * * *
101928786 TCTGTATTTTAG-TCGGATGGAAAATTGAAGCCCAGCACGATTGGACACGACTCCCCAACTCC
66 TCCGTATTTTAGCT-GAATGGAAAATTGAAGCCCAACACAATTGG-GACGA----CCAACT-C
*
101928848 CCAAATACAAAATATTGCCTCATTTTAATTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
1 CCAAATACGAAATATTGCCTCATTTTAATTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
101928913 TCCGTATTTTAGCTGAATGGAAAATTGAAG-CCAAGCACAATTGGG-C-A-CAACTC
66 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCCAA-CACAATTGGGACGACCAACTC
*
101928966 CCAAATACGAAATATTGCCTCATTTTAA-TTTTTAAAAAAATATGGACGAAATTTCCAAAAGATA
1 CCAAATACGAAATATTGCCTCATTTTAATTTTTTAAAAAAA-ATGGACGAAATTTCCAAAGGATA
* * * *
101929030 TTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGGCACGACCTCCCAACCTT
65 TTCCGTATTTTAGCTGAATGGAAAATTGAAGCCCAACACAATTGGG-ACGA----CCAA-CTC
* * * * * *
101929093 CCAAACACGAAATATTACATCGTTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTTCAAAGGA
1 CCAAATACGAAATATTGCCTCATTTTAA-TTTTTT-AAAAAAAA-TGGACGAAATTTCCAAAGGA
* *
101929158 GATTGCGTATTTTAGCTGAA
63 TATTCCGTATTTTAGCTGAA
101929178 CGAAAAATCC
Statistics
Matches: 280, Mismatches: 31, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
117 12 0.04
118 88 0.31
119 9 0.03
120 1 0.00
121 1 0.00
124 1 0.00
125 27 0.10
126 6 0.02
127 88 0.31
128 1 0.00
129 6 0.02
130 40 0.14
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (121 bp):
CCAAATACGAAATATTGCCTCATTTTAATTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATAT
TCCGTATTTTAGCTGAATGGAAAATTGAAGCCCAACACAATTGGGACGACCAACTC
Found at i:101929061 original size:245 final size:246
Alignment explanation
Indices: 101928723--101929177 Score: 618
Period size: 245 Copynumber: 1.9 Consensus size: 246
101928713 TATCGAATTT
* *
101928723 CCAAATACGAAACATTGCCTCATTTTAATTTGAGAAAACATAGATGAAACTTCAAAAGGATATTC
1 CCAAATACGAAACATTGCCTCATTTTAATTTGAGAAAAAATAGACGAAACTTCAAAAGGATATTC
** * * *
101928788 TGTATTTTAGTCGGATGGAAAATTGAAGCCCAGCACGATTGGACACGA-CTCCCCAA-CTCCCCA
66 CATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGACACGACCT-CCCAACCT-CCCA
* * * * *
101928851 AATACAAAATATTGCCTCATTTTAA-TTTTTT-AAAAAAAA-TGGACGAAATTTCCAAAGGATAT
129 AACACAAAATATTACATCATTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTCCAAAGGAGAT
101928913 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCAAGCACAATTGGGCACAACTC
194 TCCGTATTTTAGCTGAATGGAAAATTGAAGCCAAGCACAATTGGGCACAACTC
* * *
101928966 CCAAATACGAAATATTGCCTCATTTTAATTTTTA-AAAAAATATGGACGAAATTTCCAAAA-GAT
1 CCAAATACGAAACATTGCCTCATTTTAA-TTTGAGAAAAAATA--GACGAAACTT-CAAAAGGAT
* *
101929029 ATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGGCACGACCTCCCAACCTTC
62 ATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGACACGACCTCCCAACCTCC
* * *
101929094 CAAACACGAAATATTACATCGTTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTTCAAAGGAG
127 CAAACACAAAATATTACATCATTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTCCAAAGGAG
*
101929159 ATTGCGTATTTTAGCTGAA
192 ATTCCGTATTTTAGCTGAA
101929178 CGAAAAATCC
Statistics
Matches: 182, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
243 34 0.19
244 4 0.02
245 85 0.47
246 15 0.08
247 8 0.04
248 36 0.20
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (246 bp):
CCAAATACGAAACATTGCCTCATTTTAATTTGAGAAAAAATAGACGAAACTTCAAAAGGATATTC
CATATTTTAGCCGAATGGAAAATTGAAGCCCAACACGATTGGACACGACCTCCCAACCTCCCAAA
CACAAAATATTACATCATTTTAATTTTTTTAAAAAAAAATTGGACAAAATTTCCAAAGGAGATTC
CGTATTTTAGCTGAATGGAAAATTGAAGCCAAGCACAATTGGGCACAACTC
Found at i:101932206 original size:19 final size:18
Alignment explanation
Indices: 101932182--101932224 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
101932172 CTAAATATAT
*
101932182 TATTTACATATTTAACAAA
1 TATTTACATATCTAA-AAA
*
101932201 TATTTACATATCTAAATA
1 TATTTACATATCTAAAAA
101932219 TATTTA
1 TATTTA
101932225 TTGATTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTACATATCTAAAAA
Found at i:101949078 original size:22 final size:22
Alignment explanation
Indices: 101949050--101949094 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
101949040 GGAAAGCTTG
101949050 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
101949072 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
101949094 T
1 T
101949095 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:101952403 original size:22 final size:22
Alignment explanation
Indices: 101952375--101952419 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
101952365 AGGGGGAGTG
101952375 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
101952397 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
101952419 T
1 T
101952420 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:101960765 original size:20 final size:20
Alignment explanation
Indices: 101960740--101960780 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
101960730 CGATCAGTTT
101960740 CGTGACTTCAAGTTGTGATG
1 CGTGACTTCAAGTTGTGATG
101960760 CGTGACTTCAAGTTGTGATG
1 CGTGACTTCAAGTTGTGATG
101960780 C
1 C
101960781 AGAACTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (20 bp):
CGTGACTTCAAGTTGTGATG
Found at i:101975891 original size:16 final size:18
Alignment explanation
Indices: 101975861--101975894 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
101975851 TTGAAAATAG
101975861 TTTAATAAAAGTTAAAAT
1 TTTAATAAAAGTTAAAAT
101975879 TTTAA-AAAA-TTAAAAT
1 TTTAATAAAAGTTAAAAT
101975895 AGGTTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
TTTAATAAAAGTTAAAAT
Found at i:101988769 original size:30 final size:30
Alignment explanation
Indices: 101988733--101988858 Score: 198
Period size: 30 Copynumber: 4.2 Consensus size: 30
101988723 GTGGTCTAGT
*
101988733 CCCAAAAGGCGAAGGCGGTCCACTTGGTGG
1 CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
101988763 CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
1 CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
* *
101988793 ACGAAAAGGCGAAGGCGGTCCACTTGGTGA
1 CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
* * *
101988823 CCGAAAAGGCGAAGGCGGTCCATTTGGTGG
1 CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
101988853 CCCAAA
1 CCCAAA
101988859 TGGCCTAACT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 89 1.00
ACGTcount: A:0.27, C:0.25, G:0.35, T:0.13
Consensus pattern (30 bp):
CCCAAAAGGCGAAGGCGGTCCACTTGGTGA
Found at i:101991190 original size:21 final size:21
Alignment explanation
Indices: 101991166--101991208 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
101991156 CTAGCCCGTT
101991166 GACCCAAAATCCAAACAATGA
1 GACCCAAAATCCAAACAATGA
101991187 GACCCAAAATCCAAACAATGA
1 GACCCAAAATCCAAACAATGA
101991208 G
1 G
101991209 TTACACGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.28, G:0.12, T:0.09
Consensus pattern (21 bp):
GACCCAAAATCCAAACAATGA
Found at i:101993666 original size:13 final size:13
Alignment explanation
Indices: 101993627--101993670 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
101993617 ATATGTGAAG
101993627 AATATTATTTTAA
1 AATATTATTTTAA
*
101993640 ATTATTATTTTTAA
1 AATATTA-TTTTAA
101993654 AAT-TTATTATTAA
1 AATATTATT-TTAA
101993667 AATA
1 AATA
101993671 AAATTTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 2 0.08
13 16 0.62
14 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATATTATTTTAA
Found at i:101993689 original size:18 final size:18
Alignment explanation
Indices: 101993651--101993686 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
101993641 TTATTATTTT
*
101993651 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
101993669 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
101993687 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:101998197 original size:30 final size:30
Alignment explanation
Indices: 101998161--101998219 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
101998151 TATTTTATTA
101998161 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* * *
101998191 TTAATTTTGTTATTGTTTTAGAGGTATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
101998220 ACTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:101998951 original size:29 final size:32
Alignment explanation
Indices: 101998908--101998966 Score: 79
Period size: 29 Copynumber: 1.9 Consensus size: 32
101998898 TTTTCAGATT
101998908 TTAAAATGTAATTA-T-AA-TTGTTAATATGA
1 TTAAAATGTAATTATTAAATTTGTTAATATGA
* *
101998937 TTAAAATTTATTTATTAAATTTGTTAATAT
1 TTAAAATGTAATTATTAAATTTGTTAATAT
101998967 AACATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.48
30 1 0.04
31 2 0.08
32 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (32 bp):
TTAAAATGTAATTATTAAATTTGTTAATATGA
Found at i:102002944 original size:44 final size:45
Alignment explanation
Indices: 102002849--102002963 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 45
102002839 ACAGGACAGA
* *
102002849 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
102002895 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* **
102002939 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
102002964 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:102020013 original size:12 final size:11
Alignment explanation
Indices: 102019984--102020022 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
102019974 CATACCATAT
102019984 CCAATTCAAT-
1 CCAATTCAATA
*
102019994 CAAATTCAATA
1 CCAATTCAATA
102020005 CTCAATTCAATA
1 C-CAATTCAATA
102020017 CCAATT
1 CCAATT
102020023 ACCTATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 10 0.40
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (11 bp):
CCAATTCAATA
Found at i:102021374 original size:2 final size:2
Alignment explanation
Indices: 102021367--102021402 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
102021357 ATAATGTTAT
102021367 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102021403 ACAAAACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102023028 original size:18 final size:18
Alignment explanation
Indices: 102022965--102023035 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
102022955 TGGAAAGATC
102022965 GACTGTTACTGAATAATTT
1 GACTGTTACTGAATAA-TT
* * *
102022984 AATTGTTACTGTAT-ATCT
1 GACTGTTACTGAATAAT-T
* *
102023002 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
102023020 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
102023036 CTGATCAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.02
18 27 0.66
19 13 0.32
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:102023040 original size:36 final size:37
Alignment explanation
Indices: 102022970--102023040 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
102022960 AGATCGACTG
* * *
102022970 TTACTGAATAATTTAATTGTTACTGTATATCTGATTT
1 TTACTGAATAATTTAACTGTTACTGGATAACTGATTT
*
102023007 TTACTGAATAA-TTGACTGTTACTGGATAACTGAT
1 TTACTGAATAATTTAACTGTTACTGGATAACTGAT
102023041 CAATTGATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 19 0.63
37 11 0.37
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (37 bp):
TTACTGAATAATTTAACTGTTACTGGATAACTGATTT
Found at i:102023045 original size:26 final size:26
Alignment explanation
Indices: 102023016--102023066 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
102023006 TTTACTGAAT
* *
102023016 AATTGACTGTTACTGGATAACTGATC
1 AATTGACTGATACTGAATAACTGATC
*
102023042 AATTGATTGATACTGAATAACTGAT
1 AATTGACTGATACTGAATAACTGAT
102023067 TATTTTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (26 bp):
AATTGACTGATACTGAATAACTGATC
Found at i:102024040 original size:22 final size:23
Alignment explanation
Indices: 102024015--102024060 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
102024005 CAACCAAATC
102024015 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
102024037 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
102024060 A
1 A
102024061 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:102024066 original size:23 final size:23
Alignment explanation
Indices: 102024022--102024066 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
102024012 ATCAATTCAA
*
102024022 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
102024045 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
102024067 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:102029777 original size:47 final size:49
Alignment explanation
Indices: 102029654--102029786 Score: 163
Period size: 46 Copynumber: 2.8 Consensus size: 49
102029644 TGTAACCCGC
*
102029654 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACAT
*
102029700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCC--GTTCACAT
* *
102029750 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC
102029787 TCAACCATCC
Statistics
Matches: 79, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
46 36 0.46
47 31 0.39
48 3 0.04
49 2 0.03
50 4 0.05
51 3 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACAT
Found at i:102032165 original size:25 final size:25
Alignment explanation
Indices: 102032137--102032187 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
102032127 CAATCGGTTG
102032137 AAACTTTGTTGACATTCATCAGTCC
1 AAACTTTGTTGACATTCATCAGTCC
102032162 AAACTTTGTTGACATTCATCAGTCC
1 AAACTTTGTTGACATTCATCAGTCC
102032187 A
1 A
102032188 CTCGAACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (25 bp):
AAACTTTGTTGACATTCATCAGTCC
Found at i:102035178 original size:22 final size:23
Alignment explanation
Indices: 102035153--102035198 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
102035143 CAACCAAATC
102035153 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
102035175 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
102035198 A
1 A
102035199 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:102035204 original size:23 final size:23
Alignment explanation
Indices: 102035160--102035204 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
102035150 ATCAATTCAA
*
102035160 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
102035183 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
102035205 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:102043411 original size:6 final size:6
Alignment explanation
Indices: 102043401--102043439 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
102043391 TATATGGTCC
* *
102043401 AAATAC AAATAC AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
102043440 ATTAATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:102043919 original size:2 final size:2
Alignment explanation
Indices: 102043912--102043943 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
102043902 TTTAATTAAG
102043912 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
102043944 TTTAACACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:102053564 original size:44 final size:44
Alignment explanation
Indices: 102053514--102053604 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
102053504 TAGTATAGGT
102053514 ATGTGTTAATTTGGGCCTCCCTTTTATATATAGTTCATAGATTC
1 ATGTGTTAATTTGGGCCTCCCTTTTATATATAGTTCATAGATTC
102053558 ATGTGTTAATTTGGGCCTCCCTTTTATATATAGTTCATAGATTC
1 ATGTGTTAATTTGGGCCTCCCTTTTATATATAGTTCATAGATTC
102053602 ATG
1 ATG
102053605 AATGGATGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.23, C:0.15, G:0.16, T:0.45
Consensus pattern (44 bp):
ATGTGTTAATTTGGGCCTCCCTTTTATATATAGTTCATAGATTC
Found at i:102053966 original size:29 final size:29
Alignment explanation
Indices: 102053923--102053980 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
102053913 GTAGCTTTTA
102053923 ACATCATCACAGTGTAAACAAGATGTAAT
1 ACATCATCACAGTGTAAACAAGATGTAAT
*
102053952 ACATCATCACTGTGTAAACAAGATGTAAT
1 ACATCATCACAGTGTAAACAAGATGTAAT
102053981 CTCCATCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATCATCACAGTGTAAACAAGATGTAAT
Found at i:102055996 original size:45 final size:45
Alignment explanation
Indices: 102055880--102056138 Score: 281
Period size: 45 Copynumber: 5.8 Consensus size: 45
102055870 GGAGAGTTCA
* * *
102055880 AGTCCTGTTCGGTATCAT-ACTGAAGAGAAATGGAATAAGCCTTCT
1 AGTCCTGTTCGGTATCGTGTC-GAAGAGAAATGGAATAAGCCATCT
* * * * * *
102055925 AGCCCCGTTCAGTAT-GACGTCAAAGAGAAATGGAATAAGCCATCG
1 AGTCCTGTTCGGTATCG-TGTCGAAGAGAAATGGAATAAGCCATCT
* *
102055970 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCT
1 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCATCT
* * * * *
102056015 AGCCCCGTTCAGTAT-GACGTCGAAGAGAAATGGAATAAGCCATCG
1 AGTCCTGTTCGGTATCG-TGTCGAAGAGAAATGGAATAAGCCATCT
* *
102056060 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAGGCCCTCT
1 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCATCT
* * *
102056105 AGTCCTGTTCGGTACCATGCCGAAGAGAAATGGA
1 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGA
102056139 CGAACCGGCC
Statistics
Matches: 175, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
44 1 0.01
45 171 0.98
46 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (45 bp):
AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCATCT
Found at i:102056033 original size:90 final size:90
Alignment explanation
Indices: 102055880--102056106 Score: 391
Period size: 90 Copynumber: 2.5 Consensus size: 90
102055870 GGAGAGTTCA
* **
102055880 AGTCCTGTTCGGTATCATACTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
1 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
102055945 CAAAGAGAAATGGAATAAGCCATCG
66 CAAAGAGAAATGGAATAAGCCATCG
102055970 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
1 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
*
102056035 CGAAGAGAAATGGAATAAGCCATCG
66 CAAAGAGAAATGGAATAAGCCATCG
* * *
102056060 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAGGCCCTCTAG
1 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAG
102056107 TCCTGTTCGG
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 130 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (90 bp):
AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
CAAAGAGAAATGGAATAAGCCATCG
Found at i:102056129 original size:90 final size:90
Alignment explanation
Indices: 102055880--102056138 Score: 385
Period size: 90 Copynumber: 2.9 Consensus size: 90
102055870 GGAGAGTTCA
* *
102055880 AGTCCTGTTCGGTATCAT-ACTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACG
1 AGTCCTGTTCGGTATCGTGTC-GAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACG
*
102055944 TCAAAGAGAAATGGAATAAGCCATCG
65 TCGAAGAGAAATGGAATAAGCCATCG
*
102055970 AGTCCTGTTCGGTATCGTGTTGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
1 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
102056035 CGAAGAGAAATGGAATAAGCCATCG
66 CGAAGAGAAATGGAATAAGCCATCG
* * * * * ** * *
102056060 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAGGCCCTCTAGTCCTGTTCGGTACCATGC
1 AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
102056125 CGAAGAGAAATGGA
66 CGAAGAGAAATGGA
102056139 CGAACCGGCC
Statistics
Matches: 154, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
90 154 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (90 bp):
AGTCCTGTTCGGTATCGTGTCGAAGAGAAATGGAATAAGCCTTCTAGCCCCGTTCAGTATGACGT
CGAAGAGAAATGGAATAAGCCATCG
Found at i:102061134 original size:40 final size:41
Alignment explanation
Indices: 102061061--102061156 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
102061051 GACTATGTTC
* *
102061061 GGCACTAAGTGTGCG-GTTCGAAATAGCTCTGGCTACAA-A
1 GGCACTAAGTGTACGAGTTCGAAATAACTCTGGCTACAAGA
* * *
102061100 TGGCACTAAGTGTACGAGTT-GGAATAACTTTGGCTATAAGA
1 -GGCACTAAGTGTACGAGTTCGAAATAACTCTGGCTACAAGA
102061141 GGCACTAAGTGTACGA
1 GGCACTAAGTGTACGA
102061157 TACTGAGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 45 0.92
41 4 0.08
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (41 bp):
GGCACTAAGTGTACGAGTTCGAAATAACTCTGGCTACAAGA
Found at i:102062142 original size:23 final size:24
Alignment explanation
Indices: 102062100--102062155 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
102062090 TAGCCTTCTA
*
102062100 ACCACCTGCTCCACCGCTTG-T-C
1 ACCACCTGCTCCACCACTTGCTCC
*
102062122 AGCCACCTGCTCCTCCACTTGCTCC
1 A-CCACCTGCTCCACCACTTGCTCC
102062147 ACCACCTGC
1 ACCACCTGC
102062156 AAGGTTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.03
23 17 0.59
24 9 0.31
25 2 0.07
ACGTcount: A:0.14, C:0.52, G:0.12, T:0.21
Consensus pattern (24 bp):
ACCACCTGCTCCACCACTTGCTCC
Found at i:102062144 original size:12 final size:12
Alignment explanation
Indices: 102062100--102062155 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
102062090 TAGCCTTCTA
102062100 ACCACCTGCTCC
1 ACCACCTGCTCC
* *
102062112 ACCGCTTG-T-C
1 ACCACCTGCTCC
102062122 AGCCACCTGCTCC
1 A-CCACCTGCTCC
* *
102062135 TCCACTTGCTCC
1 ACCACCTGCTCC
102062147 ACCACCTGC
1 ACCACCTGC
102062156 AAGGTTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
10 2 0.06
11 6 0.18
12 24 0.73
13 1 0.03
ACGTcount: A:0.14, C:0.52, G:0.12, T:0.21
Consensus pattern (12 bp):
ACCACCTGCTCC
Found at i:102063051 original size:3 final size:3
Alignment explanation
Indices: 102063045--102063071 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
102063035 CTATTTTACC
102063045 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
102063072 TCATGTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:102068313 original size:46 final size:46
Alignment explanation
Indices: 102068260--102068442 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
102068250 TATATATACA
* * * *
102068260 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
102068306 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
102068352 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
102068398 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
102068443 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:102068487 original size:47 final size:47
Alignment explanation
Indices: 102068416--102068747 Score: 468
Period size: 47 Copynumber: 7.1 Consensus size: 47
102068406 ACACATTTCG
* * * * * *
102068416 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
102068463 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
102068510 CATTGGCCATTCGGCCTTATCACAGATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
102068557 CATTGGCCATTCGGCCTTATCACACATATGCTTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
102068604 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
102068651 CATTGGCCATTCAGCCTTATCTCATACATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
102068698 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
102068745 CAT
1 CAT
102068748 AAAATCCTAA
Statistics
Matches: 260, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 259 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:102068627 original size:22 final size:22
Alignment explanation
Indices: 102068506--102068580 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
102068496 GTTCACATTC
102068506 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
102068528 ATCACAGATAT-GCATATTC-ACATT
1 ATCAC--AT-TGGC-CATTCGGCCTT
102068552 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
102068575 ATCACA
1 ATCACA
102068581 CATATGCTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:102071716 original size:16 final size:15
Alignment explanation
Indices: 102071690--102071719 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
102071680 GTCAAGATAT
102071690 ACCTGGGATGCTAAG
1 ACCTGGGATGCTAAG
102071705 ACCTGTGGATGCTAA
1 ACCTG-GGATGCTAA
102071720 AAAATATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (15 bp):
ACCTGGGATGCTAAG
Found at i:102072751 original size:53 final size:53
Alignment explanation
Indices: 102072694--102072795 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
102072684 TACTTCACCT
* *
102072694 AAAAAAAGGAGAGG-CGAATGCGAAAACACGCAAAGGGCACTTTGAGACCTTTA
1 AAAAAAAAGAGAGGCCG-AGGCGAAAACACGCAAAGGGCACTTTGAGACCTTTA
* * *
102072747 AAAAAAAAGAGAGGCCGGGGCGAAAACCCGTAAAGGGCACTTTGAGACC
1 AAAAAAAAGAGAGGCCGAGGCGAAAACACGCAAAGGGCACTTTGAGACC
102072796 AAAGGGGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 41 0.95
54 2 0.05
ACGTcount: A:0.42, C:0.19, G:0.28, T:0.11
Consensus pattern (53 bp):
AAAAAAAAGAGAGGCCGAGGCGAAAACACGCAAAGGGCACTTTGAGACCTTTA
Found at i:102074008 original size:45 final size:44
Alignment explanation
Indices: 102073944--102074195 Score: 208
Period size: 45 Copynumber: 5.6 Consensus size: 44
102073934 GCGAATCTAT
* *
102073944 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACTAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-AAACCTTA
* * * *
102073989 TCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAACCTTA
* * * * *
102074034 TTTCCCTGAAATTACAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--T--ACAAAC----CTTA
* * *
102074086 TCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA--TAGCAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAACCTTA
* * * *
102074127 TCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-AAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
102074170 TCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGA
102074196 CTTGTAATAG
Statistics
Matches: 162, Mismatches: 31, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
41 26 0.16
42 1 0.01
43 32 0.20
44 1 0.01
45 69 0.43
46 2 0.01
47 1 0.01
48 3 0.02
49 1 0.01
50 1 0.01
51 1 0.01
52 24 0.15
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
Found at i:102074140 original size:138 final size:138
Alignment explanation
Indices: 102073944--102074195 Score: 337
Period size: 138 Copynumber: 1.8 Consensus size: 138
102073934 GCGAATCTAT
* *
102073944 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACTAAACCTTATCTCCCTGAAGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTAGAGCAGATCAAAG-C-CTAAACCTTATCTCCCTGAAGTTGCAGTGG
* *
102074009 AGTAGACTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTGAAGCTATAAAT
64 AGCAGACTGAAGATA--AAATCTTATCTCCCTGAAATTACAGTGGAACAGATTGAAGCTATAAAT
102074074 AAACAGATCTTA
127 AAACAGATCTTA
* * *
102074086 TCTCTCTGAAGTTGCAGTAGAGCAGATCATAG-C-AAACCTTATCTCCTTGAAGTTGCAGTGGAG
1 TCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGCCTAAACCTTATCTCCCTGAAGTTGCAGTGGAG
** * * * *
102074149 CAGGTTGAAGTTAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
66 CAGACTGAAGATAAAATCTTATCTCCCTGAAATTACAGTGGAACAGA
102074196 CTTGTAATAG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
136 30 0.31
138 38 0.39
139 1 0.01
142 28 0.29
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (138 bp):
TCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGCCTAAACCTTATCTCCCTGAAGTTGCAGTGGAG
CAGACTGAAGATAAAATCTTATCTCCCTGAAATTACAGTGGAACAGATTGAAGCTATAAATAAAC
AGATCTTA
Found at i:102074145 original size:93 final size:96
Alignment explanation
Indices: 102073985--102074158 Score: 219
Period size: 93 Copynumber: 1.8 Consensus size: 96
102073975 GCCACTAAAC
* * * *
102073985 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCCTGAAATTACA
1 CTTATCTCCCTGAAGTTGCAGT-GAGTAGACAGAACATAGCAAACCTTATCTCCCTGAAATTACA
102074050 GTGGAACAGATTGAAGCTATAAATAAACAGAT
65 GTGGAACAGATTGAAGCTATAAATAAACAGAT
* * * * *
102074082 CTTATCTCTCTGAAGTTGCAGT-AG-AG-CAGATCATAGCAAACCTTATCTCCTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGAGTAGACAGAACATAGCAAACCTTATCTCCCTGAAATTACAG
* *
102074144 TGGAGCAGGTTGAAG
66 TGGAACAGATTGAAG
102074159 TTAAAATCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
93 41 0.62
94 2 0.03
95 2 0.03
97 21 0.32
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (96 bp):
CTTATCTCCCTGAAGTTGCAGTGAGTAGACAGAACATAGCAAACCTTATCTCCCTGAAATTACAG
TGGAACAGATTGAAGCTATAAATAAACAGAT
Found at i:102074184 original size:43 final size:42
Alignment explanation
Indices: 102074080--102074194 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
102074070 AAATAAACAG
* * *
102074080 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA-GATCATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATCATAGAAA
* * * *
102074121 ACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGA-AGTTAAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATCATAG--AAA
102074164 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
102074195 ACTTGTAATA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 28 0.45
42 3 0.05
43 31 0.50
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATCATAGAAA
Found at i:102076290 original size:46 final size:44
Alignment explanation
Indices: 102076265--102076424 Score: 178
Period size: 46 Copynumber: 3.5 Consensus size: 44
102076255 GATCAAGTGA
* * *
102076265 CAAGTGGA-AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGAT
* * *
102076310 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGAT
*
102076356 CAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGAT
* *
102076402 CAAGTGATAAGTGAAAAGTGATA
1 CAAGTGACAAGTGATAAGTGATA
102076425 AGTGATAGCT
Statistics
Matches: 107, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
44 2 0.02
45 19 0.18
46 86 0.80
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (44 bp):
CAAGTGACAAGTGATAAGTGATAGCTTAGCTACACTTATCTGAT
Found at i:102076326 original size:98 final size:92
Alignment explanation
Indices: 102076272--102076473 Score: 278
Period size: 98 Copynumber: 2.1 Consensus size: 92
102076262 TGACAAGTGG
*
102076272 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
* *
102076337 TCGGCTATACTTATCTGATCAAGTGAC
66 TCAGCTACACTTATCTGATCAAGTGAC
*
102076364 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTG---A-T--AAAGTGATAAGTG
* * **
102076429 ATAGCTTCGGCTATACTTATCTGATCAAGAAAC
60 ATAGCTTCAGCTACACTTATCTGATCAAGTGAC
102076462 AAAGTGATAAGT
1 AAAGTGATAAGT
102076474 GGCTACACTT
Statistics
Matches: 100, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
92 42 0.42
95 1 0.01
96 1 0.01
98 56 0.56
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (92 bp):
AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
TCAGCTACACTTATCTGATCAAGTGAC
Found at i:102076415 original size:7 final size:7
Alignment explanation
Indices: 102076398--102076431 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
102076388 TACACTTATC
102076398 TGATCAAG
1 TGAT-AAG
102076406 TGATAAG
1 TGATAAG
*
102076413 TGAAAAG
1 TGATAAG
102076420 TGATAAG
1 TGATAAG
102076427 TGATA
1 TGATA
102076432 GCTTCGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (7 bp):
TGATAAG
Found at i:102076466 original size:144 final size:144
Alignment explanation
Indices: 102076206--102076474 Score: 448
Period size: 144 Copynumber: 1.9 Consensus size: 144
102076196 TTTGAGTACT
* * *
102076206 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* ** *
102076271 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAAACAAAGTGATAAGTGATAGC
102076336 TTCGGCTATACTTA
131 TTCGGCTATACTTA
* *
102076350 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
102076415 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAAACAAAGTGATAAGTG
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAAACAAAGTGATAAGTG
102076475 GCTACACTTA
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 115 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAAACAAAGTGATAAGTGATAGC
TTCGGCTATACTTA
Found at i:102076484 original size:37 final size:37
Alignment explanation
Indices: 102076437--102076546 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
102076427 TGATAGCTTC
*
102076437 GGCTATACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
102076474 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
102076511 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
102076546 G
1 G
102076547 ATCATACGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 53 0.78
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:102077228 original size:44 final size:44
Alignment explanation
Indices: 102077176--102077500 Score: 189
Period size: 44 Copynumber: 7.3 Consensus size: 44
102077166 CTTATTTCCA
*
102077176 TGAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATTGAAATTACAAGTCTTATCTCTC
* * * * *
102077220 TGAAGTTGCAGTGGAGCAGACTGAAGA-TAGAAAATCTTATTTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAA-ATTA-CAAGTCTTATCTCTC
**
102077265 TGAAGTTGCAGTGGAATAGATTAAAGCTATAAGTTAC-AGATCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATT---G--A-AA-TTACAAG-TCTTATCTCTC
* * ** * * **
102077316 TGAAATAGCAGTACAGCAGATCG-AA--ACAAGCCTTAAGTCTC
1 TGAAGTTGCAGTGGAGCAGATTGAAATTACAAGTCTTATCTCTC
* * *
102077357 TGAAGTTGCAATGGAGTAGGTTGAAATTACAAGTCTTATCT-TC
1 TGAAGTTGCAGTGGAGCAGATTGAAATTACAAGTCTTATCTCTC
* * * * * *
102077400 TTGAAGTTGCAGCGGAGCATATTGAAACTATTAA-TCCTATCTCCC
1 -TGAAGTTGCAGTGGAGCAGATTGAAATTA-CAAGTCTTATCTCTC
** ** * *
102077445 TGAAGTTATAGTGGAGCAGATT-AAAGCGACAAGTCCTATATCTC
1 TGAAGTTGCAGTGGAGCAGATTGAAA-TTACAAGTCTTATCTCTC
*
102077489 TAAAGTTGCAGT
1 TGAAGTTGCAGT
102077501 AGTTCAGATT
Statistics
Matches: 207, Mismatches: 54, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
41 25 0.12
42 4 0.02
43 7 0.03
44 105 0.51
45 34 0.16
48 2 0.01
50 3 0.01
51 25 0.12
52 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAGATTGAAATTACAAGTCTTATCTCTC
Found at i:102077273 original size:45 final size:45
Alignment explanation
Indices: 102077148--102077279 Score: 160
Period size: 44 Copynumber: 3.0 Consensus size: 45
102077138 GGGTGTTACA
* * *
102077148 AGACTAAAGATAGCGAATCTTATTTCCATGAAGTTGCAGTGGAGC
1 AGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGC
** * * *
102077193 AGGTTGAA-ATTA-CAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
1 AGACTGAAGA-TAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGC
*
102077237 AGACTGAAGATAGAAAATCTTATTTCCCTGAAGTTGCAGTGGA
1 AGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGA
102077280 ATAGATTAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
44 36 0.51
45 34 0.49
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (45 bp):
AGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGC
Found at i:102078933 original size:3 final size:3
Alignment explanation
Indices: 102078920--102078953 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
102078910 CTATTTTACC
*
102078920 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
102078954 CTACTTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:102079087 original size:3 final size:3
Alignment explanation
Indices: 102079079--102079107 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
102079069 TACATAATAC
102079079 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102079108 TCATGTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:102082724 original size:23 final size:23
Alignment explanation
Indices: 102082698--102082742 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
102082688 TAGGTATGTG
*
102082698 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
102082721 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
102082743 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:102089960 original size:14 final size:14
Alignment explanation
Indices: 102089941--102089970 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
102089931 ATTGACGGAC
102089941 CCGAAACCACTGTT
1 CCGAAACCACTGTT
*
102089955 CCGAAACTACTGTT
1 CCGAAACCACTGTT
102089969 CC
1 CC
102089971 AATTAAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.37, G:0.13, T:0.23
Consensus pattern (14 bp):
CCGAAACCACTGTT
Found at i:102092261 original size:46 final size:44
Alignment explanation
Indices: 102092202--102092316 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
102092192 ACAGGACAGA
* *
102092202 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
102092248 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
102092292 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
102092317 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:102092297 original size:44 final size:45
Alignment explanation
Indices: 102092202--102092335 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
102092192 ACAGGACAGA
* *
102092202 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
102092248 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
102092292 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
102092336 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:102098651 original size:46 final size:44
Alignment explanation
Indices: 102098592--102098706 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
102098582 ACAGGACAGA
* *
102098592 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
102098638 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
102098682 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
102098707 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:102098687 original size:44 final size:45
Alignment explanation
Indices: 102098592--102098725 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
102098582 ACAGGACAGA
* *
102098592 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
102098638 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
102098682 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
102098726 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:102102782 original size:22 final size:22
Alignment explanation
Indices: 102102757--102102809 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
102102747 TTTACAAGCC
102102757 CTCTCAACTAGAATGACAAATT
1 CTCTCAACTAGAATGACAAATT
102102779 CTCTCAACTAGAATGACAAATT
1 CTCTCAACTAGAATGACAAATT
*
102102801 CTTTCAACT
1 CTCTCAACT
102102810 CTAGAATTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (22 bp):
CTCTCAACTAGAATGACAAATT
Found at i:102107486 original size:16 final size:16
Alignment explanation
Indices: 102107465--102107514 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
102107455 AATGTGTAAG
102107465 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
*
102107481 ACCAT-G--GCAAG--
1 ACCATGGTTGAAAGAT
102107492 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
102107508 ACCATGG
1 ACCATGG
102107515 AAACATGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
11 5 0.19
12 1 0.04
13 4 0.15
14 4 0.15
15 1 0.04
16 12 0.44
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:102107500 original size:27 final size:27
Alignment explanation
Indices: 102107462--102107514 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
102107452 TGAAATGTGT
102107462 AAGACCATGGTTGAAAGATACCATGGC
1 AAGACCATGGTTGAAAGATACCATGGC
102107489 AAGACCATGGTTGAAAGATACCATGG
1 AAGACCATGGTTGAAAGATACCATGG
102107515 AAACATGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (27 bp):
AAGACCATGGTTGAAAGATACCATGGC
Found at i:102107535 original size:73 final size:73
Alignment explanation
Indices: 102107416--102107563 Score: 260
Period size: 73 Copynumber: 2.0 Consensus size: 73
102107406 TGAAATGTGT
* *
102107416 AAGACCATGGGTGAAAGATACAATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGGTGAAAGATACAATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
102107481 ACCATGGC
66 ACCATGGC
* *
102107489 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGGTGAAAGATACAATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
102107554 ACCATGGC
66 ACCATGGC
102107562 AA
1 AA
102107564 CATGACGGGA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (73 bp):
AAGACCATGGGTGAAAGATACAATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGC
Found at i:102107541 original size:46 final size:46
Alignment explanation
Indices: 102107489--102107689 Score: 235
Period size: 46 Copynumber: 4.4 Consensus size: 46
102107479 ATACCATGGC
* * * **
102107489 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
**
102107535 AAGACCATGGTTGAAAGATACCATGGCAACATGAC-GGGAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
* * ** * *
102107580 ATGACCATGGTTGAAAGATACCATTGCAATGTAACATG-AAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAT
* *
102107626 AAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
*
102107672 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
102107690 CATTATGGCA
Statistics
Matches: 130, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
45 36 0.28
46 93 0.72
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
Found at i:102107595 original size:91 final size:92
Alignment explanation
Indices: 102107489--102107689 Score: 251
Period size: 91 Copynumber: 2.2 Consensus size: 92
102107479 ATACCATGGC
* * ***
102107489 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
**
102107554 ACCATGGCAACATGAC-GGGAATGAAT
66 ACCATGGCAACATGACAGAAAATGAAT
* * * ** *
102107580 ATGACCATGGTTGAAAGATACCATTGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
* *
102107645 ACCATGGCAACCTGACAGAAAATGAGT
66 ACCATGGCAACATGACAGAAAATGAAT
*
102107672 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
102107690 CATTATGGCA
Statistics
Matches: 92, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
91 69 0.75
92 23 0.25
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (92 bp):
AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAAATGAAT
Found at i:102108561 original size:43 final size:43
Alignment explanation
Indices: 102108514--102108609 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
102108504 TAACCCAACT
*
102108514 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCTCAAAC
1 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
* * * * *
102108557 ATGGTCTTACACGTAATCACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
102108600 ATGGTCTTAC
1 ATGGTCTTAC
102108610 CCATAATCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
Found at i:102108617 original size:43 final size:43
Alignment explanation
Indices: 102108514--102108621 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
102108504 TAACCCAACT
* * *
102108514 ATGGTCTTACACGA-AATCAAATAACGATACTAATGTCTCAAAC
1 ATGGTCTTAC-CCATAATCACATAACGATACTAATGTCCCAAAC
* * * * *
102108557 ATGGTCTTACACGTAATCACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACCCATAATCACATAACGATACTAATGTCCCAAAC
102108600 ATGGTCTTACCCATAATCACAT
1 ATGGTCTTACCCATAATCACAT
102108622 CTCGTTAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACCCATAATCACATAACGATACTAATGTCCCAAAC
Found at i:102109640 original size:25 final size:25
Alignment explanation
Indices: 102109612--102109697 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
102109602 CCACATCTCT
*
102109612 CATGAGCTTCCTGATATTTAGCTCG
1 CATGAGCTTCCTGTTATTTAGCTCG
* **
102109637 CATGAGCTTTCTGTTATTTAGCTTA
1 CATGAGCTTCCTGTTATTTAGCTCG
* * *
102109662 TATGAGCTTCCCGTTATATAGCTCG
1 CATGAGCTTCCTGTTATTTAGCTCG
**
102109687 CAAAAGCTTCC
1 CATGAGCTTCC
102109698 CATTTACATG
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (25 bp):
CATGAGCTTCCTGTTATTTAGCTCG
Found at i:102112909 original size:35 final size:35
Alignment explanation
Indices: 102112865--102113027 Score: 229
Period size: 35 Copynumber: 4.6 Consensus size: 35
102112855 TCCTCATTGA
* *
102112865 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
* **
102112900 AATGCCATACCTACGTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
102112935 AATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
102112970 GATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
102113005 AATACTATACCTTACGTTTCACA
1 AATACCATACC-TACGTTTCACA
102113028 CTTTTCCATG
Statistics
Matches: 114, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
34 3 0.03
35 100 0.88
36 11 0.10
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:102116969 original size:50 final size:50
Alignment explanation
Indices: 102116894--102117091 Score: 261
Period size: 50 Copynumber: 3.8 Consensus size: 50
102116884 GATAATAACA
* *
102116894 TGCCAAAGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
102116944 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
102116994 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
102117049 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
102117092 TTACCCAAAT
Statistics
Matches: 130, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
50 86 0.66
53 2 0.02
54 1 0.01
55 2 0.02
56 39 0.30
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:102117080 original size:106 final size:100
Alignment explanation
Indices: 102116901--102117091 Score: 292
Period size: 106 Copynumber: 1.9 Consensus size: 100
102116891 ACATGCCAAA
* *
102116901 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
102116966 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
66 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
*
102117001 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAATGCCATGTCC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-AGG-TGCCAACGCCATGTCC
*
102117066 CAGACATGGTCTTACATGGGATCTCT
60 CAGACATGGTCTTACATGGGACCTCT
102117092 TTACCCAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
100 35 0.43
103 3 0.04
104 1 0.01
105 2 0.02
106 40 0.49
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (100 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
Found at i:102117207 original size:13 final size:13
Alignment explanation
Indices: 102117186--102117217 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
102117176 GCTTGGATCA
*
102117186 TCATCAAATAAAT
1 TCATAAAATAAAT
102117199 TCATAAAATAAAT
1 TCATAAAATAAAT
102117212 TCATAA
1 TCATAA
102117218 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:102117464 original size:30 final size:30
Alignment explanation
Indices: 102117429--102117486 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
102117419 CCTCGACTCT
*
102117429 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
102117459 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
102117487 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:102124507 original size:50 final size:50
Alignment explanation
Indices: 102124432--102124629 Score: 261
Period size: 50 Copynumber: 3.8 Consensus size: 50
102124422 GATAATAACA
* *
102124432 TGCCAAAGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
102124482 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
102124532 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
102124587 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
102124630 TTACCCAAAT
Statistics
Matches: 130, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
50 86 0.66
53 2 0.02
54 1 0.01
55 2 0.02
56 39 0.30
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:102124618 original size:106 final size:100
Alignment explanation
Indices: 102124439--102124629 Score: 292
Period size: 106 Copynumber: 1.9 Consensus size: 100
102124429 ACATGCCAAA
* *
102124439 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
102124504 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
66 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
*
102124539 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAATGCCATGTCC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-AGG-TGCCAACGCCATGTCC
*
102124604 CAGACATGGTCTTACATGGGATCTCT
60 CAGACATGGTCTTACATGGGACCTCT
102124630 TTACCCAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
100 35 0.43
103 3 0.04
104 1 0.01
105 2 0.02
106 40 0.49
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (100 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
Found at i:102124745 original size:13 final size:13
Alignment explanation
Indices: 102124724--102124755 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
102124714 GCTTGGATCA
*
102124724 TCATCAAATAAAT
1 TCATAAAATAAAT
102124737 TCATAAAATAAAT
1 TCATAAAATAAAT
102124750 TCATAA
1 TCATAA
102124756 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:102125002 original size:30 final size:30
Alignment explanation
Indices: 102124967--102125024 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
102124957 CCTCGACTCT
*
102124967 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
102124997 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
102125025 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:102130472 original size:143 final size:141
Alignment explanation
Indices: 102130207--102130501 Score: 376
Period size: 143 Copynumber: 2.1 Consensus size: 141
102130197 TAGAATTAAA
* * * * * *
102130207 CAAGTGCATTGTTTATTCCTCTCTAAGGTTGGGCCTTTTTCGGGTTTAGTATTGTTGTTCCGACT
1 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTGTTCCAACT
* * *
102130272 CTTCATTTTTCTCAAAGTCACCATGTCCGAGGCATACTGGGATATATGTATGTCATATTACACTC
66 CTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACACTC
**
102130337 CATGAATATTC
131 CACAAATATTC
*
102130348 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGTCTTTTCCAGGTTTAGTATT-TTGATTCTCCA
1 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTG--T-TCCA
* * ** ** *
102130412 AGTCTTCATTTTGCTCGAAGTCACTGTGTTTGATGCATACCGGGATATATGTATGTCATATGACA
63 ACTCTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACA
102130477 CTCCACAAATATTC
128 CTCCACAAATATTC
*
102130491 CAAATACATGG
1 CAAGTACATGG
102130502 AAAAACTTAG
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
140 3 0.02
141 47 0.36
142 1 0.01
143 80 0.61
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (141 bp):
CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTGTTCCAACT
CTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACACTC
CACAAATATTC
Found at i:102143425 original size:16 final size:15
Alignment explanation
Indices: 102143394--102143427 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
102143384 TTTTATATGT
*
102143394 AATTTTTATTTTTTA
1 AATTTTTATTTATTA
102143409 AATTTTTATTTCATTA
1 AATTTTTATTT-ATTA
102143425 AAT
1 AAT
102143428 AGAATTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
AATTTTTATTTATTA
Done.