Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 311 of 332
Found at i:102145832 original size:23 final size:23
Alignment explanation
Indices: 102145802--102145852 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
102145792 ACTTAGCCTA
102145802 ATTTTCTT-AAATCTTTTTTATAT
1 ATTTTCTTAAAATCTTTTTT-TAT
102145825 ATTTTCTTGAAAATCTTTTTTTAT
1 ATTTTCTT-AAAATCTTTTTTTAT
102145849 -TTTT
1 ATTTT
102145853 GATTGAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.46
24 3 0.12
25 11 0.42
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.67
Consensus pattern (23 bp):
ATTTTCTTAAAATCTTTTTTTAT
Found at i:102145858 original size:24 final size:25
Alignment explanation
Indices: 102145810--102145860 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
102145800 TAATTTTCTT
*
102145810 AAATCTTTTTTATATATTTTCTTGA
1 AAATCTTTTTTATATATTTTATTGA
102145835 AAATCTTTTTT-TAT-TTTTGATTGA
1 AAATCTTTTTTATATATTTT-ATTGA
102145859 AA
1 AA
102145861 TACTCTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 9 0.38
25 11 0.46
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (25 bp):
AAATCTTTTTTATATATTTTATTGA
Found at i:102148832 original size:47 final size:47
Alignment explanation
Indices: 102148762--102149248 Score: 794
Period size: 47 Copynumber: 10.2 Consensus size: 47
102148752 TTTAGGATTC
* *
102148762 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102148809 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
102148858 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
102148907 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
102148954 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102149001 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
102149050 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102149097 TATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
102149144 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * * *
102149191 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102149238 AATGTGATAAG
1 TATGTGATAAG
102149249 TCCCGAAGGC
Statistics
Matches: 416, Mismatches: 20, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 277 0.67
49 139 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:102148865 original size:96 final size:96
Alignment explanation
Indices: 102148762--102149248 Score: 797
Period size: 96 Copynumber: 5.1 Consensus size: 96
102148752 TTTAGGATTC
* *
102148762 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102148827 AGCCGATGTGATGAATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
*
102148858 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
102148923 ATGGCCGATGTGATGAATGTGAAAGTG--TATA
64 ATGGCCGATGTGATGAATGTGAAAGTGTATATA
102148954 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102149019 AGCCGATGTGATGAATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
102149050 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102149115 GGCTGATGTGATGAATGTGAAAGTG--TATA
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
102149144 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
102149209 GGCCAACGTGATGGATGTGAAAGTGTATA-A
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
102149239 -ATGTGATAAG
1 TATGTGATAAG
102149249 TCCCGAAGGC
Statistics
Matches: 371, Mismatches: 14, Indels: 14
0.93 0.04 0.04
Matches are distributed among these distances:
94 142 0.38
95 1 0.00
96 182 0.49
98 46 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:102149065 original size:143 final size:143
Alignment explanation
Indices: 102148762--102149248 Score: 816
Period size: 143 Copynumber: 3.4 Consensus size: 143
102148752 TTTAGGATTC
* *
102148762 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
102148827 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
66 GGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
102148892 GTGAAAGTGTATATA
129 GTGAAAGTGTATATA
102148907 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102148972 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
66 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
102149037 GAAAGTGTATATA
131 GAAAGTGTATATA
102149050 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102149115 GGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
102149180 GAAAGTG--TATA
131 GAAAGTGTATATA
* * * * * * * *
102149191 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
102149249 TCCCGAAGGC
Statistics
Matches: 327, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 54 0.17
143 186 0.57
145 87 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATA
Found at i:102149423 original size:37 final size:37
Alignment explanation
Indices: 102149366--102149444 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
102149356 CCGAGCTCTA
* * *
102149366 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
102149403 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCCGGGT
102149440 AAGAC
1 AAGAC
102149445 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
Found at i:102151607 original size:40 final size:40
Alignment explanation
Indices: 102151298--102151678 Score: 384
Period size: 40 Copynumber: 9.6 Consensus size: 40
102151288 TCGAATGATG
* *
102151298 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * *
102151338 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * *
102151377 TTCCGGGCTAA--CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * *
102151416 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * *
102151456 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
102151496 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
102151536 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
102151576 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * *
102151616 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
102151656 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
102151679 ATCATGCTGG
Statistics
Matches: 299, Mismatches: 34, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
38 33 0.11
39 2 0.01
40 244 0.82
41 20 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:102154622 original size:47 final size:47
Alignment explanation
Indices: 102154571--102155065 Score: 765
Period size: 47 Copynumber: 10.2 Consensus size: 47
102154561 TTAGGATCTC
*
102154571 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
102154618 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
102154667 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102154714 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102154761 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
102154810 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
102154857 TATGTGATAAGGCCTAATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTG---A----TAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
102154914 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
102154961 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * * *
102155008 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
102155055 AATGTGATAAG
1 TATGTGATAAG
102155066 TCCGCGAAGG
Statistics
Matches: 419, Mismatches: 15, Indels: 28
0.91 0.03 0.06
Matches are distributed among these distances:
47 242 0.58
49 126 0.30
50 4 0.01
54 4 0.01
55 33 0.08
57 10 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:102154676 original size:96 final size:96
Alignment explanation
Indices: 102154571--102155065 Score: 750
Period size: 96 Copynumber: 5.1 Consensus size: 96
102154561 TTAGGATCTC
*
102154571 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
102154636 GGCCGATGTGATGAATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
102154667 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102154732 GGCCGATGTGATAAATGTGAAAGTG--TATA
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
*
102154761 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
102154826 ATGGCCGATGTGATGAATGTGAAAGTGTATATA
64 ATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
102154859 TGTGATAAGGCCTAATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATG-T---G-ATAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
102154924 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
58 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
102154961 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
102155026 GGCCAACGTGATGGATGTGAAAGTGTATA-A
66 GGCCGATGTGATGAATGTGAAAGTGTATATA
102155056 -ATGTGATAAG
1 TATGTGATAAG
102155066 TCCGCGAAGG
Statistics
Matches: 371, Mismatches: 16, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
94 96 0.26
95 1 0.00
96 169 0.46
97 3 0.01
98 8 0.02
99 1 0.00
101 1 0.00
102 8 0.02
103 3 0.01
104 81 0.22
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:102154734 original size:143 final size:143
Alignment explanation
Indices: 102154571--102155065 Score: 787
Period size: 143 Copynumber: 3.4 Consensus size: 143
102154561 TTAGGATCTC
102154571 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
102154636 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
102154701 GTGAAAGTGTATA
131 GTGAAAGTGTATA
102154714 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
102154779 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
102154844 GTGAAAGTGTATA
131 GTGAAAGTGTATA
*
102154857 TATGTGATAAGGCCTAATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 TATGTG---A----TAA-GGCCTAATGGCCGATGTGATAAATGTGAAAGTG--TATATATGTGAT
102154922 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
56 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
102154985 TGTGATGAATGTGAAAGTGTATA
121 TGTGATGAATGTGAAAGTGTATA
* * * * * * ** *
102155008 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAG
102155066 TCCGCGAAGG
Statistics
Matches: 331, Mismatches: 11, Indels: 22
0.91 0.03 0.06
Matches are distributed among these distances:
141 14 0.04
143 176 0.53
144 1 0.00
146 1 0.00
148 1 0.00
150 3 0.01
151 89 0.27
153 46 0.14
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATA
Found at i:102155243 original size:37 final size:37
Alignment explanation
Indices: 102155186--102155264 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
102155176 CCGAGCTCTA
* * *
102155186 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
102155223 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCCGGGT
102155260 AAGAC
1 AAGAC
102155265 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
Found at i:102159546 original size:14 final size:14
Alignment explanation
Indices: 102159527--102159557 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
102159517 TATAGCTCTA
*
102159527 TCTTAGGTTTGCAT
1 TCTTAGCTTTGCAT
102159541 TCTTAGCTTTGCAT
1 TCTTAGCTTTGCAT
102159555 TCT
1 TCT
102159558 GACTAGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.16, T:0.52
Consensus pattern (14 bp):
TCTTAGCTTTGCAT
Found at i:102164285 original size:243 final size:251
Alignment explanation
Indices: 102163797--102164285 Score: 738
Period size: 243 Copynumber: 2.0 Consensus size: 251
102163787 ATACAGATCT
*
102163797 CCTTATATTTATAACGAGCAATACTTCTCATGCTCATACGAATTTAGAGCTACTTACTTGCCCAA
1 CCTTATATTTATAACGAGCAATACTTCTCATGCTCATACGAAATTAGAGCTACTTACTTGCCCAA
102163862 TCGCCGTGTGTATCTTTTTGCAGGATGGAAAGCATTGTGAAATTCTAACAATTGGCAATGGTTGT
66 TCGCCGTGTGTATCTTTTTGCAGGATGGAAAGCATTGTGAAATTCTAACAATTGGCAATGGTTGT
102163927 TTAGCTTTAAATTGAGCTAGAAAATGTCCGACGCTATTATCCTTGAGCAAATACTTATTTGTGTG
131 TTAGCTTTAAATTGAGCTAGAAAATGTCCGAC-CTATTATCCTTGAGCAAATACTTATTTGTGTG
*
102163992 CTCATAAGGCATTGCATTAGAACTGTCGCCAGGTTTTAGCGTGATAGCTTTAGATTC
195 CTCATAAGGCATTGCATTAGAACTGTCGCCAGGTTTTAGAGTGATAGCTTTAGATTC
*
102164049 CCTTATATTTA-AAC-AGCATATTCTT-TCATGCTCATACGAAATTAGAGCTACTTACTTG-CCA
1 CCTTATATTTATAACGAGCA-ATACTTCTCATGCTCATACGAAATTAGAGCTACTTACTTGCCCA
* *
102164110 ATTGCCGTGTGTAT-TCTTTTGCAGGA-GGAAAGCATTGTGAAATTCT-A-AATTTGCAATGGTT
65 ATCGCCGTGTGTATCT-TTTTGCAGGATGGAAAGCATTGTGAAATTCTAACAATTGGCAATGGTT
102164171 GTTTAGCTCTTAAATTTGAG-TAGAAAATGTCC-A-C-ATTATCCTTGAGCAAATACTTATTTGT
129 GTTTAGCT-TTAAA-TTGAGCTAGAAAATGTCCGACCTATTATCCTTGAGCAAATACTTATTTGT
* *
102164232 GTGCTTCATAAGGCAATT-CATTAGAAACTGTCG-CAGG-TTTAGATTGTTAGCTTT
192 GTGC-TCATAAGGC-ATTGCATTAG-AACTGTCGCCAGGTTTTAGAGTGATAGCTTT
102164286 TAAAACCATC
Statistics
Matches: 223, Mismatches: 7, Indels: 23
0.88 0.03 0.09
Matches are distributed among these distances:
243 45 0.20
244 20 0.09
245 11 0.05
246 22 0.10
247 18 0.08
248 26 0.12
249 26 0.12
250 36 0.16
251 8 0.04
252 11 0.05
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (251 bp):
CCTTATATTTATAACGAGCAATACTTCTCATGCTCATACGAAATTAGAGCTACTTACTTGCCCAA
TCGCCGTGTGTATCTTTTTGCAGGATGGAAAGCATTGTGAAATTCTAACAATTGGCAATGGTTGT
TTAGCTTTAAATTGAGCTAGAAAATGTCCGACCTATTATCCTTGAGCAAATACTTATTTGTGTGC
TCATAAGGCATTGCATTAGAACTGTCGCCAGGTTTTAGAGTGATAGCTTTAGATTC
Found at i:102167128 original size:4 final size:4
Alignment explanation
Indices: 102167115--102167146 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
102167105 TAGATGGAAG
102167115 CTTT -TTT CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
102167147 GTTTTGCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:102168866 original size:2 final size:2
Alignment explanation
Indices: 102168859--102168895 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
102168849 AAGAACATGA
* *
102168859 TC TC TC TC TC TT TC TC TC TC TC TC TC GC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
102168896 ATCTATCTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (2 bp):
TC
Found at i:102170388 original size:18 final size:17
Alignment explanation
Indices: 102170361--102170397 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
102170351 TTAAATATGT
102170361 AAATATAAATATAACAA
1 AAATATAAATATAACAA
*
102170378 AAATAATAAATATATCAA
1 AAAT-ATAAATATAACAA
102170396 AA
1 AA
102170398 TCTAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATATAAATATAACAA
Found at i:102176962 original size:38 final size:41
Alignment explanation
Indices: 102176892--102176980 Score: 121
Period size: 39 Copynumber: 2.2 Consensus size: 41
102176882 TAAAAAGTAT
* *
102176892 TTATATTAAAAAACACTACTATAAATATAAT-AATTTTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
102176932 TTATATTAAAAAATAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
102176971 TTTTATTAAA
1 TTATATTAAA
102176981 TATAATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 11 0.25
39 18 0.41
40 15 0.34
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:102177133 original size:18 final size:18
Alignment explanation
Indices: 102177089--102177135 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 18
102177079 ATTTAATATA
*
102177089 AATATAA-ACATATAATT
1 AATATAATATATATAATT
*
102177106 ATTATTTAATATATATAATT
1 A--ATATAATATATATAATT
102177126 AATATAATAT
1 AATATAATAT
102177136 TTTTTATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.04
18 8 0.33
19 5 0.21
20 10 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATAATATATATAATT
Found at i:102180565 original size:18 final size:18
Alignment explanation
Indices: 102180538--102180573 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
102180528 TAGAATAAAG
102180538 ATATAAAGAAATCAACAA
1 ATATAAAGAAATCAACAA
*
102180556 ATATACAGAAATCAACAA
1 ATATAAAGAAATCAACAA
102180574 GAAACAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.14, G:0.06, T:0.17
Consensus pattern (18 bp):
ATATAAAGAAATCAACAA
Found at i:102189800 original size:16 final size:17
Alignment explanation
Indices: 102189779--102189820 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
102189769 AATGTACGTA
102189779 ATATACATAAATAT-AT
1 ATATACATAAATATAAT
102189795 ATATACAT-AATATAAT
1 ATATACATAAATATAAT
*
102189811 ATTTACATAA
1 ATATACATAA
102189821 TGTATACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 17 0.74
17 1 0.04
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATACATAAATATAAT
Found at i:102189821 original size:16 final size:17
Alignment explanation
Indices: 102189779--102189945 Score: 66
Period size: 17 Copynumber: 9.8 Consensus size: 17
102189769 AATGTACGTA
102189779 ATATACATAA-ATATAT
1 ATATACATAATATATAT
102189795 ATATACATAATATA-AT
1 ATATACATAATATATAT
* * *
102189811 ATTTACATAATGTATAC
1 ATATACATAATATATAT
* * * *
102189828 ATACAAAAAAGGACTATTAAT
1 ATATACATAA-TA-TA-T-AT
102189849 AATACTACATAAATATATACGT
1 -ATA-TACAT-AATATATA--T
* * *
102189871 ATATATAAAAAATATAT
1 ATATACATAATATATAT
102189888 ATATACAT-ATATA-AT
1 ATATACATAATATATAT
*
102189903 AT-TA-A-AA-A-ATGT
1 ATATACATAATATATAT
102189915 ATATACATAATATATAT
1 ATATACATAATATATAT
*
102189932 GA-AAACATAATATA
1 -ATATACATAATATA
102189946 GTATTAGAAA
Statistics
Matches: 109, Mismatches: 23, Indels: 37
0.64 0.14 0.22
Matches are distributed among these distances:
11 1 0.01
12 4 0.04
13 4 0.04
14 3 0.03
15 6 0.06
16 29 0.27
17 31 0.28
18 1 0.01
19 9 0.08
20 5 0.05
21 5 0.05
22 6 0.06
23 3 0.03
24 2 0.02
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (17 bp):
ATATACATAATATATAT
Found at i:102189897 original size:21 final size:21
Alignment explanation
Indices: 102189859--102189898 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102189849 AATACTACAT
* *
102189859 AAATATATACGTATATATAAA
1 AAATATATACATACATATAAA
*
102189880 AAATATATATATACATATA
1 AAATATATACATACATATA
102189899 TAATATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
AAATATATACATACATATAAA
Found at i:102189900 original size:27 final size:28
Alignment explanation
Indices: 102189870--102189945 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
102189860 AATATATACG
102189870 TATATATAAAAAATATATATATACAT-A
1 TATATATAAAAAATATATATATACATAA
* *
102189897 TATAATATTAAAAA-ATGTATATACATAA
1 TAT-ATATAAAAAATATATATATACATAA
*
102189925 TATATATGAAAACATA-ATATA
1 TATATAT-AAAAAATATATATA
102189946 GTATTAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 18 0.45
28 21 0.52
29 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (28 bp):
TATATATAAAAAATATATATATACATAA
Found at i:102189927 original size:42 final size:39
Alignment explanation
Indices: 102189871--102189997 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 39
102189861 ATATATACGT
* *
102189871 ATATATAAAAAATATATATATACATATATAATATTAAAAA
1 ATATATACATAATATATATA-ACATATATAATATTAAAAA
* *
102189911 ATGTATATACATAATATATATGAAAACATAATATAGTATT-AGAA
1 A--TATATACATAATATATAT---AACAT-ATATAATATTAAAAA
* * *
102189955 ATATATACATGACATATATAA-AGATATAATATTAAAAA
1 ATATATACATAATATATATAACATATATAATATTAAAAA
102189993 GATAT
1 -ATAT
102189998 GTATATATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
37 9 0.13
38 4 0.06
39 6 0.09
40 1 0.01
42 32 0.46
44 8 0.11
45 10 0.14
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (39 bp):
ATATATACATAATATATATAACATATATAATATTAAAAA
Found at i:102190263 original size:15 final size:15
Alignment explanation
Indices: 102190240--102190269 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102190230 AACACAATAT
*
102190240 ATATGGTATTAAAAA
1 ATATAGTATTAAAAA
102190255 ATATAGTATTAAAAA
1 ATATAGTATTAAAAA
102190270 CATAACATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
ATATAGTATTAAAAA
Found at i:102190694 original size:18 final size:19
Alignment explanation
Indices: 102190650--102190698 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
102190640 TATATGTAAC
*
102190650 TAATAACAT-TAAAATACA
1 TAATAATATATAAAATACA
102190668 TACATAATATATAAAATACA
1 TA-ATAATATATAAAATACA
102190688 T-ATAATATATA
1 TAATAATATATA
102190699 TATTAGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 12 0.43
19 6 0.21
20 10 0.36
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATAATATATAAAATACA
Found at i:102190699 original size:20 final size:20
Alignment explanation
Indices: 102190659--102190700 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
102190649 CTAATAACAT
*
102190659 TAAAATACATACATAATATA
1 TAAAATACATAAATAATATA
102190679 TAAAATACATATAAT-ATATA
1 TAAAATACATA-AATAATATA
102190699 TA
1 TA
102190701 TTAGAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAATACATAAATAATATA
Found at i:102190762 original size:20 final size:19
Alignment explanation
Indices: 102190661--102190762 Score: 55
Period size: 21 Copynumber: 5.1 Consensus size: 19
102190651 AATAACATTA
102190661 AAATACATACATAATATAT
1 AAATACATACATAATATAT
102190680 AAAATACAT--ATAATATAT
1 -AAATACATACATAATATAT
* * * *
102190698 ATATTAGAAATGATAATAATAT
1 A-AATACATA-CATAAT-ATAT
* * *
102190720 AAAAACTATTCATACGCTATAT
1 AAATAC-ATACATA--ATATAT
102190742 AAATACATACATATATATAT
1 AAATACATACATA-ATATAT
102190762 A
1 A
102190763 TAAAATAATG
Statistics
Matches: 60, Mismatches: 14, Indels: 16
0.67 0.16 0.18
Matches are distributed among these distances:
17 1 0.02
18 13 0.22
20 14 0.23
21 16 0.27
22 15 0.25
23 1 0.02
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATACATACATAATATAT
Found at i:102190903 original size:24 final size:25
Alignment explanation
Indices: 102190859--102190917 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
102190849 TATAAACAAT
*
102190859 AATATATATAACATACAATAT-TGAA
1 AATATATAT-ACATACAATATACGAA
102190884 AATATATATACATA-ATATATACGAA
1 AATATATATACATACA-ATATACGAA
102190909 AA-ATATATA
1 AATATATATA
102190918 GATATACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 1 0.03
24 16 0.52
25 14 0.45
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (25 bp):
AATATATATACATACAATATACGAA
Found at i:102190942 original size:30 final size:30
Alignment explanation
Indices: 102190889--102190963 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
102190879 TTGAAAATAT
*
102190889 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
102190919 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
102190949 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
102190964 TAGGAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:102200468 original size:15 final size:16
Alignment explanation
Indices: 102200435--102200503 Score: 50
Period size: 18 Copynumber: 4.2 Consensus size: 16
102200425 TTTTAACAAA
* *
102200435 AAATATAAAAATATTT
1 AAATATAAAAAAATAT
102200451 AAAT-TAAAAAAATAT
1 AAATATAAAAAAATAT
* *
102200466 AAAATCGTAAAAAATTAT
1 -AAAT-ATAAAAAAATAT
* *
102200484 AAAATATATAGAAATAT
1 -AAATATAAAAAAATAT
102200501 AAA
1 AAA
102200504 AAAATATATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
15 9 0.21
16 11 0.26
17 8 0.19
18 15 0.35
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATATAAAAAAATAT
Found at i:102200788 original size:16 final size:18
Alignment explanation
Indices: 102200754--102200797 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
102200744 AATGGTTAAA
*
102200754 TATTTTTTTGGTGTATTT
1 TATTTTTTTGGTATATTT
102200772 TATTTTTTTGG-AT-TTT
1 TATTTTTTTGGTATATTT
102200788 TATTATTTTT
1 TATT-TTTTT
102200798 TTATAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 6 0.25
18 11 0.46
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (18 bp):
TATTTTTTTGGTATATTT
Found at i:102200797 original size:10 final size:10
Alignment explanation
Indices: 102200784--102200858 Score: 73
Period size: 10 Copynumber: 7.5 Consensus size: 10
102200774 TTTTTTTGGA
102200784 TTTTTATTATT
1 TTTTTATTA-T
*
102200795 TTTTTATAAT
1 TTTTTATTAT
*
102200805 TTTTTATTAA
1 TTTTTATTAT
** *
102200815 AATTTAATAT
1 TTTTTATTAT
102200825 TTTTTA-TAT
1 TTTTTATTAT
102200834 TTTTTATT-T
1 TTTTTATTAT
102200843 TTATTTATTAT
1 TT-TTTATTAT
102200854 TTTTT
1 TTTTT
102200859 TGTCACATAT
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
9 12 0.23
10 29 0.56
11 11 0.21
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTTATTAT
Found at i:102200807 original size:19 final size:18
Alignment explanation
Indices: 102200769--102200812 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
102200759 TTTTGGTGTA
* *
102200769 TTTTATTTTTTTGGATTT
1 TTTTATTTTTTTAGAATT
*
102200787 TTATTATTTTTTTATAATT
1 TT-TTATTTTTTTAGAATT
102200806 TTTTATT
1 TTTTATT
102200813 AAAATTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTTTAGAATT
Found at i:102202266 original size:32 final size:33
Alignment explanation
Indices: 102202201--102202266 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
102202191 CAACCCAATT
* *
102202201 TAAAATTAAATTATACAAAAAATATATATTTTAG
1 TAAAATTAAATTATA-AAAAAATATAAAATTTAG
* *
102202235 TAAAATTGAATTAT-AAATAATATAAAATTTAG
1 TAAAATTAAATTATAAAAAAATATAAAATTTAG
102202267 AGTAAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 15 0.54
34 13 0.46
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (33 bp):
TAAAATTAAATTATAAAAAAATATAAAATTTAG
Found at i:102204942 original size:22 final size:23
Alignment explanation
Indices: 102204912--102204960 Score: 91
Period size: 22 Copynumber: 2.2 Consensus size: 23
102204902 GGTAGCTCCG
102204912 TATTACATGCTATATCTTTCCTT
1 TATTACATGCTATATCTTTCCTT
102204935 TATT-CATGCTATATCTTTCCTT
1 TATTACATGCTATATCTTTCCTT
102204957 TATT
1 TATT
102204961 GTTGAATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTACATGCTATATCTTTCCTT
Found at i:102212521 original size:84 final size:84
Alignment explanation
Indices: 102212380--102212548 Score: 293
Period size: 84 Copynumber: 2.0 Consensus size: 84
102212370 AGTCTTAGTA
* * * *
102212380 TTAGTAATCTAAAGCGCTCTTTCACTCGTTTGCATTCTCTCCCCATTCTTTACTTCCTAAGAAGC
1 TTAGTAATCCAAAGCGCTCTTTCACTCGTTTGCACTCGCTCCCCATTCCTTACTTCCTAAGAAGC
102212445 TCATTATTCAGTGTTGGCT
66 TCATTATTCAGTGTTGGCT
*
102212464 TTAGTAATCCAAAGCGCTCTTTCACTCGTTTGCACTCGCTCCCTATTCCTTACTTCCTAAGAAGC
1 TTAGTAATCCAAAGCGCTCTTTCACTCGTTTGCACTCGCTCCCCATTCCTTACTTCCTAAGAAGC
102212529 TCATTATTCAGTGTTGGCT
66 TCATTATTCAGTGTTGGCT
102212548 T
1 T
102212549 AAGCTAGATC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (84 bp):
TTAGTAATCCAAAGCGCTCTTTCACTCGTTTGCACTCGCTCCCCATTCCTTACTTCCTAAGAAGC
TCATTATTCAGTGTTGGCT
Found at i:102214878 original size:33 final size:33
Alignment explanation
Indices: 102214836--102214902 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
102214826 AGAGTTGTTG
102214836 AATTGCACTCGGCAGTACTAACTGCAGATTATC
1 AATTGCACTCGGCAGTACTAACTGCAGATTATC
102214869 AATTGCACTCGGCAGTACTAACTGCAGATTATC
1 AATTGCACTCGGCAGTACTAACTGCAGATTATC
102214902 A
1 A
102214903 CTAAGGTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (33 bp):
AATTGCACTCGGCAGTACTAACTGCAGATTATC
Found at i:102215640 original size:22 final size:22
Alignment explanation
Indices: 102215590--102215641 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
102215580 TCTAAATAAT
* * *
102215590 AACAACAAAATAATAGTAATAT
1 AACAGCAAAATAATAGTAAAAC
* *
102215612 AATAGCAAAATGATAGTAAAAC
1 AACAGCAAAATAATAGTAAAAC
102215634 AACAGCAA
1 AACAGCAA
102215642 GAAAAAAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.17
Consensus pattern (22 bp):
AACAGCAAAATAATAGTAAAAC
Found at i:102216619 original size:19 final size:18
Alignment explanation
Indices: 102216595--102216642 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
102216585 ACGTAAAAAG
102216595 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
102216614 TAAAAATAAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
102216633 TAAAAATAAA
1 TAAAAATAAA
102216643 TAACAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:102217561 original size:16 final size:16
Alignment explanation
Indices: 102217531--102217578 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
102217521 GAAAATTAAT
102217531 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
102217546 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
102217563 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
102217578 A
1 A
102217579 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:102217577 original size:11 final size:11
Alignment explanation
Indices: 102217522--102217592 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
102217512 ATAGCTTAAG
*
102217522 AAAATTAATAT
1 AAAATTAAAAT
102217533 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
102217545 AATAA-T-AATT
1 AA-AATTAAAAT
*
102217555 AAAAAT-AAAT
1 AAAATTAAAAT
102217565 AAAATTAAAAT
1 AAAATTAAAAT
*
102217576 AAACTTAAAAT
1 AAAATTAAAAT
*
102217587 AGAATT
1 AAAATT
102217593 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:102222436 original size:6 final size:6
Alignment explanation
Indices: 102222418--102222511 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
102222408 AAGAAACATT
* *
102222418 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
102222467 ATCAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
102222512 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:102222469 original size:31 final size:31
Alignment explanation
Indices: 102222432--102222511 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
102222422 GAACTAGAAT
* *
102222432 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
102222463 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
102222494 TAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
102222512 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:102222678 original size:27 final size:26
Alignment explanation
Indices: 102222648--102222742 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 26
102222638 GCCCAGTTAT
* *
102222648 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
102222675 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
102222701 CAGATATTTGTGGC-GTAGCCACCAGAAA
1 CAGATA-TTGTGGCAG-AGCCACCAG-AA
*
102222729 CAGATAATGTGGCA
1 CAGATATTGTGGCA
102222743 AAGCTACTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
26 8 0.13
27 45 0.74
28 8 0.13
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:102222936 original size:22 final size:22
Alignment explanation
Indices: 102222908--102222972 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
102222898 GCAAATACGT
*
102222908 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
102222930 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
102222952 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
102222973 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:102223468 original size:27 final size:27
Alignment explanation
Indices: 102223417--102223889 Score: 610
Period size: 27 Copynumber: 17.6 Consensus size: 27
102223407 TGCCCCACAA
* * *
102223417 GGTATCTCGGTAATTCCACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* ** *
102223444 GATATTTTAGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223471 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
102223498 GGTATTGCGATAATTCTACCATACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223525 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
102223552 GGTATTTTGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223579 GGTATTGT-GATAATTCTACCCTACAGG
1 GGTATT-TCGGTAATTCTACCCTACAGG
*
102223606 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223633 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
102223660 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
102223687 GGTATTTCGGTAATTCTACTCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
102223714 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
102223741 GGTATTGCGATAATTCTACCCT-CAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
102223767 GGTATTTCGGTAATTTTACCCCATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223794 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
102223821 GGTA-TTCTGGTAATTCTACCCTACAAG
1 GGTATTTC-GGTAATTCTACCCTACAGG
* * * *
102223848 GGTATTTCGGTATTTCTACCCCATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
102223875 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
102223890 TTGTAAATTG
Statistics
Matches: 387, Mismatches: 54, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.06
27 358 0.93
28 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:102223555 original size:81 final size:81
Alignment explanation
Indices: 102223427--102223889 Score: 678
Period size: 81 Copynumber: 5.7 Consensus size: 81
102223417 GGTATCTCGG
* * * ** * *
102223427 TAATTCCACCTTACAGGGATATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
102223492 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* * *
102223508 TAATTCTACCATACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
* *
102223573 TACAAGGGTATTGTGA
66 TACAGGGGTATTGCGA
* * * *
102223589 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
102223654 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* *
102223670 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCTATAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
102223735 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* * *
102223751 TAATTCTACCCT-CAGGGGTATTTCGGTAATTTTACCCCATAAGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
*
102223815 TACAGGGGTATT-CTGG
66 TACAGGGGTATTGC-GA
* * *
102223831 TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCCATAAGGGTATTTCGGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATT
102223890 TTGTAAATTG
Statistics
Matches: 348, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
79 1 0.00
80 72 0.21
81 275 0.79
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTGCGA
Found at i:102223951 original size:27 final size:27
Alignment explanation
Indices: 102223924--102224240 Score: 304
Period size: 27 Copynumber: 11.8 Consensus size: 27
102223914 ATTCTGTAAG
* *
102223924 TCAAGGGTACTTTGGTAATTTTACAAG
1 TCAAGGGTATTTTGGTAATTTTACAAA
* *** **
102223951 TCGAGGGTATTTCAATAATTTTACAGG
1 TCAAGGGTATTTTGGTAATTTTACAAA
** *
102223978 TCGAA-GGTATTTCAGTAATTTCACAAA
1 TC-AAGGGTATTTTGGTAATTTTACAAA
*
102224005 TCAAGGGTATTTTGGTAATTTCACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
102224032 TC-AGGGTATTTTGGTAATTTTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
102224058 -CTAAGGGTATTTTGATAATTTTACAAA
1 TC-AAGGGTATTTTGGTAATTTTACAAA
* *
102224085 -CTAGGGGTATTTTGATAATTTTACAAA
1 TC-AAGGGTATTTTGGTAATTTTACAAA
* * **
102224112 CCAGGGGTATTTTGGTAATTTTGTAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
102224139 -CTAAGGGTATTTTGGTAATTTTACAAA
1 TC-AAGGGTATTTTGGTAATTTTACAAA
* * * *
102224166 CCAGGGGTATTTTGGTGATTTTATAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * *
102224193 CCAAGGGTATTTTAGTGATTTTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
102224220 -CCAGTGGTATTTTGGTAATTT
1 TCAAG-GGTATTTTGGTAATTT
102224241 GGTAAACTAA
Statistics
Matches: 251, Mismatches: 31, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 29 0.12
27 218 0.87
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TCAAGGGTATTTTGGTAATTTTACAAA
Found at i:102230128 original size:19 final size:18
Alignment explanation
Indices: 102230104--102230151 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
102230094 ACGTAAAAAG
102230104 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
102230123 TAAAAATGAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
102230142 TAAAAATAAA
1 TAAAAATAAA
102230152 TAACAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:102231085 original size:16 final size:15
Alignment explanation
Indices: 102231044--102231091 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
102231034 GAAAATTAAT
102231044 ATAAAATCTAAAAT-A
1 ATAAAAT-TAAAATAA
102231059 ATAATAATTAAAAGTAA
1 ATAA-AATTAAAA-TAA
102231076 ATAAAATTAAAATAA
1 ATAAAATTAAAATAA
102231091 A
1 A
102231092 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (15 bp):
ATAAAATTAAAATAA
Found at i:102231090 original size:11 final size:11
Alignment explanation
Indices: 102231035--102231105 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
102231025 ACAGCTTAAG
*
102231035 AAAATTAATAT
1 AAAATTAAAAT
102231046 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
102231058 AATAA-T-AATT
1 AA-AATTAAAAT
*
102231068 AAAAGT-AAAT
1 AAAATTAAAAT
102231078 AAAATTAAAAT
1 AAAATTAAAAT
*
102231089 AAACTTAAAAT
1 AAAATTAAAAT
*
102231100 AGAATT
1 AAAATT
102231106 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:102240967 original size:5 final size:5
Alignment explanation
Indices: 102240959--102240985 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
102240949 TTTAGTGCAC
102240959 GAACT GAACT GAACT GAACT GAACT GA
1 GAACT GAACT GAACT GAACT GAACT GA
102240986 GAGATGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (5 bp):
GAACT
Found at i:102245729 original size:35 final size:33
Alignment explanation
Indices: 102245690--102245783 Score: 98
Period size: 35 Copynumber: 2.8 Consensus size: 33
102245680 TTTAAACTAC
*
102245690 TTTTAAATAATATAATTTTAATTATTATAATTCAT
1 TTTTAAAT-ATATAATTTTAATAATTATAATT-AT
** *
102245725 TTTTATTTTTTATAATTTTAATAATTATAATTAT
1 TTTTA-AATATATAATTTTAATAATTATAATTAT
* * *
102245759 TCTTAAATATATAATTATCATAATT
1 TTTTAAATATATAATTTTAATAATT
102245784 TCTATTAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
33 15 0.31
34 6 0.12
35 26 0.54
36 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.56
Consensus pattern (33 bp):
TTTTAAATATATAATTTTAATAATTATAATTAT
Found at i:102245896 original size:13 final size:12
Alignment explanation
Indices: 102245844--102245898 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
102245834 TATGTCAATC
102245844 TTTTT-AATTAA
1 TTTTTAAATTAA
102245855 TAATTTTAAATTAAA
1 T--TTTTAAATT-AA
*
102245870 TATTTAAATT-A
1 TTTTTAAATTAA
102245881 TTTTTAAATGTAA
1 TTTTTAAAT-TAA
102245894 TTTTT
1 TTTTT
102245899 GGAGTCGGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
11 10 0.28
12 1 0.03
13 18 0.50
14 4 0.11
15 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
TTTTTAAATTAA
Found at i:102246427 original size:29 final size:30
Alignment explanation
Indices: 102246377--102246438 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
102246367 ACTTATTTTA
*
102246377 TTGTTGATTTTGTTATTATTTTAAAAGCAT
1 TTGTTAATTTTGTTATTATTTTAAAAGCAT
* *
102246407 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAAGCAT
102246436 TTG
1 TTG
102246439 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAAGCAT
Found at i:102251778 original size:21 final size:21
Alignment explanation
Indices: 102251740--102251779 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
102251730 ATTACTCCAA
*
102251740 AGAAGCCGATTGATCCATCTC
1 AGAAGCCGATTCATCCATCTC
102251761 AGAAGCCGGATTCA-CCATC
1 AGAAGCC-GATTCATCCATC
102251780 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAAGCCGATTCATCCATCTC
Found at i:102253736 original size:24 final size:24
Alignment explanation
Indices: 102253683--102253782 Score: 92
Period size: 24 Copynumber: 4.1 Consensus size: 24
102253673 AGATGAAGAC
* * *
102253683 GAAGACAAAGACAGAGGGTGGAGAT
1 GAAGATAAAGAC-GAGAGTCGAGAT
102253708 GAAGATAAAGACGAGAGTCGAGAT
1 GAAGATAAAGACGAGAGTCGAGAT
* * * * * *
102253732 AAAGATTAATATGAGGGTGGAGAT
1 GAAGATAAAGACGAGAGTCGAGAT
* *
102253756 GAAGATGAAGACGAGAGTCGATAT
1 GAAGATAAAGACGAGAGTCGAGAT
102253780 GAA
1 GAA
102253783 AATTAATATA
Statistics
Matches: 59, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 48 0.81
25 11 0.19
ACGTcount: A:0.44, C:0.06, G:0.35, T:0.15
Consensus pattern (24 bp):
GAAGATAAAGACGAGAGTCGAGAT
Found at i:102253807 original size:48 final size:48
Alignment explanation
Indices: 102253696--102253814 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
102253686 GACAAAGACA
*
102253696 GAGGGTGGAGATGAAGATAAAGACGAGAGTCGAGATAAAGATTAATAT
1 GAGGGTGGAGATGAAGATGAAGACGAGAGTCGAGATAAAGATTAATAT
*
102253744 GAGGGTGGAGATGAAGATGAAGACGAGAGTCGATATGAAA-ATTAATAT
1 GAGGGTGGAGATGAAGATGAAGACGAGAGTCGAGAT-AAAGATTAATAT
* * *
102253792 -AGGGGTTGAGGTGAAGAAGAAGA
1 GA-GGGTGGAGATGAAGATGAAGA
102253815 TGAAGACGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 1 0.02
48 60 0.94
49 3 0.05
ACGTcount: A:0.42, C:0.03, G:0.36, T:0.18
Consensus pattern (48 bp):
GAGGGTGGAGATGAAGATGAAGACGAGAGTCGAGATAAAGATTAATAT
Found at i:102257221 original size:21 final size:21
Alignment explanation
Indices: 102257197--102257267 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
102257187 TTTTTGAAAA
102257197 GAAATGTGTAAGACCATGGTT
1 GAAATGTGTAAGACCATGGTT
* *
102257218 GAAA-G-ATACCATGACAACATGATAT
1 GAAATGTGTA--A-GAC--CATGGT-T
102257243 GAAATGTGTAAGACCATGGTT
1 GAAATGTGTAAGACCATGGTT
102257264 GAAA
1 GAAA
102257268 GATACCATGG
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 10 0.26
22 8 0.21
24 8 0.21
25 6 0.16
26 1 0.03
27 2 0.05
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (21 bp):
GAAATGTGTAAGACCATGGTT
Found at i:102257249 original size:46 final size:46
Alignment explanation
Indices: 102257197--102257514 Score: 429
Period size: 46 Copynumber: 6.9 Consensus size: 46
102257187 TTTTTGAAAA
* * *
102257197 GAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * *
102257243 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* *
102257289 GAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGACAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
** * **
102257335 GAAATGAACAAGACCATGATTGAAAGATACCATGGCAACATGACGG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * *
102257381 GAAATGAATAATACCATGGTTGAAAGATACCATGGCAACGTGACAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * *
102257427 GAAATGAATAATACCATGGTTGAAAGATACCATGGCAACATGACAA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * * *
102257473 GAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
102257515 TCAAAGATAA
Statistics
Matches: 246, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 246 1.00
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (46 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
Found at i:102269092 original size:7 final size:7
Alignment explanation
Indices: 102269080--102269113 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
102269070 TGTTCTTTTT
102269080 AATTTAA
1 AATTTAA
102269087 AATTTAA
1 AATTTAA
102269094 AATTTAA
1 AATTTAA
102269101 AATTTAA
1 AATTTAA
102269108 AATTTA
1 AATTTA
102269114 TATAAATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:102279549 original size:66 final size:66
Alignment explanation
Indices: 102279443--102279572 Score: 242
Period size: 66 Copynumber: 2.0 Consensus size: 66
102279433 ACCACCCCCA
102279443 GCTTTCCAAAATTATCCTAATTAAATGAATTTGAAGAAAAATTAAAAAACTTACTTTGTATTATC
1 GCTTTCCAAAATTATCCTAATTAAATGAATTTGAAGAAAAATTAAAAAACTTACTTTGTATTATC
102279508 T
66 T
**
102279509 GCTTTCCAAAATTATCCTAATTAAATGAATTTGAAGAAAAATTAACTAACTTACTTTGTATTAT
1 GCTTTCCAAAATTATCCTAATTAAATGAATTTGAAGAAAAATTAAAAAACTTACTTTGTATTAT
102279573 ATTCGGATAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (66 bp):
GCTTTCCAAAATTATCCTAATTAAATGAATTTGAAGAAAAATTAAAAAACTTACTTTGTATTATC
T
Found at i:102289455 original size:30 final size:30
Alignment explanation
Indices: 102289410--102289476 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
102289400 AATAATCAGA
* *
102289410 TTTAACTTAATTGAGAA-AAGATAATAAATT
1 TTTATCTTAAATGAGAACAAGATAAT-AATT
102289440 TTTATCTTAAATGAGAACAAGATAATAATT
1 TTTATCTTAAATGAGAACAAGATAATAATT
*
102289470 TCTATCT
1 TTTATCT
102289477 GAACTTCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 25 0.76
31 8 0.24
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (30 bp):
TTTATCTTAAATGAGAACAAGATAATAATT
Found at i:102290430 original size:31 final size:32
Alignment explanation
Indices: 102290392--102290454 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
102290382 GTAATGGTTA
*
102290392 ATTTCATTTTTT-TAATATTATTTAAT-TTTTT
1 ATTTCATTTTTTATAAT-TTAATTAATATTTTT
102290423 ATTTCATTTTTTATAATTTAATTAATATTTTT
1 ATTTCATTTTTTATAATTTAATTAATATTTTT
102290455 TATAATAGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 20 0.69
32 9 0.31
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (32 bp):
ATTTCATTTTTTATAATTTAATTAATATTTTT
Found at i:102292108 original size:33 final size:34
Alignment explanation
Indices: 102292066--102292176 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 34
102292056 GTGAATACGT
*
102292066 ATAAGACCATAGCCGGGCTATGGC-ATATTGA-TG
1 ATAAGACCATAGCAGGGCTATGGCAATA-TGAGTG
* * *
102292099 ATAAGACCATAACTGGGTTATGGCAATATGAGTG
1 ATAAGACCATAGCAGGGCTATGGCAATATGAGTG
* * *
102292133 -TAAGACCATGGCAGGGCCATGGCAATGT-ACGT-
1 ATAAGACCATAGCAGGGCTATGGCAATATGA-GTG
102292165 ATAAGACCATAG
1 ATAAGACCATAG
102292177 TTGGACCATG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
32 1 0.02
33 58 0.91
34 5 0.08
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (34 bp):
ATAAGACCATAGCAGGGCTATGGCAATATGAGTG
Found at i:102292153 original size:107 final size:107
Alignment explanation
Indices: 102291960--102292156 Score: 263
Period size: 107 Copynumber: 1.8 Consensus size: 107
102291950 TGTTTAAATG
** * * *
102291960 TAAGACCATAGTTGGGCTATGGCATTTTAGTGAAAAGACCATAACTGAGTTATGGCACTGTGAAC
1 TAAGACCATAGCCGGGCTATGGCATTTGAGTGAAAAGACCATAACTGAGTTATGGCAATATGAAC
*
102292025 GTAAGACCATGGTTAGACCATGGCAGTATATGTGAATACGTA
66 GTAAGACCATGGTCAGACCATGGCAGTATATGTGAATACGTA
* * *
102292067 TAAGACCATAGCCGGGCTATGGCATATTGA-TGATAAGACCATAACTGGGTTATGGCAATATGAG
1 TAAGACCATAGCCGGGCTATGGCAT-TTGAGTGAAAAGACCATAACTGAGTTATGGCAATATGAA
* *
102292131 TGTAAGACCATGG-CAGGGCCATGGCA
65 CGTAAGACCATGGTCA-GACCATGGCA
102292157 ATGTACGTAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 1 0.01
107 73 0.95
108 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (107 bp):
TAAGACCATAGCCGGGCTATGGCATTTGAGTGAAAAGACCATAACTGAGTTATGGCAATATGAAC
GTAAGACCATGGTCAGACCATGGCAGTATATGTGAATACGTA
Found at i:102296828 original size:80 final size:78
Alignment explanation
Indices: 102296727--102296888 Score: 252
Period size: 80 Copynumber: 2.1 Consensus size: 78
102296717 ATGCAAGACA
*
102296727 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTACTAGAAATGTATCCGGGGGCTAAAGT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTAGTACTAGAAATGTATCC--GGGCTAAAGT
*
102296792 CCTGCAGGCTTCGTG
64 CCCGCAGGCTTCGTG
* * *
102296807 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTAGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTAGTACTAGAAATGTATCCGGGCTAAAGTCC
*
102296872 CGCAGGCTTTGTG
66 CGCAGGCTTCGTG
102296885 CTGG
1 CTGG
102296889 TAATATAATT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
78 27 0.36
80 49 0.64
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.25
Consensus pattern (78 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTAGTACTAGAAATGTATCCGGGCTAAAGTCC
CGCAGGCTTCGTG
Found at i:102296840 original size:39 final size:39
Alignment explanation
Indices: 102296727--102296888 Score: 252
Period size: 39 Copynumber: 4.1 Consensus size: 39
102296717 ATGCAAGACA
*
102296727 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTA
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
102296766 CTAGAAATGTATCCGGGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCC--GGGCTAAAGTCCCGCAGGCTTCGTG
* *
102296807 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTAGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
102296846 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
102296885 CTGG
1 CTGG
102296889 TAATATAATT
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 76 0.68
41 36 0.32
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:102299108 original size:18 final size:19
Alignment explanation
Indices: 102299084--102299137 Score: 76
Period size: 18 Copynumber: 2.9 Consensus size: 19
102299074 TACTCTGTAC
*
102299084 CTGACTGTGACTGTTACTG
1 CTGACTGTTACTGTTACTG
*
102299103 -TGACTGTTACTGCTACTG
1 CTGACTGTTACTGTTACTG
102299121 CT-ACTGTTACTGTTACT
1 CTGACTGTTACTGTTACT
102299138 CTTACGGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 30 0.97
19 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (19 bp):
CTGACTGTTACTGTTACTG
Found at i:102299119 original size:6 final size:6
Alignment explanation
Indices: 102299087--102299142 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
102299077 TCTGTACCTG
* * * *
102299087 ACTGTG ACTGTT ACTGTG ACTGTT ACTGCT ACTGCT ACTGTT ACTGTT
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT
*
102299135 ACTCTT AC
1 ACTGTT AC
102299143 GGTGTATTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (6 bp):
ACTGTT
Found at i:102310376 original size:121 final size:121
Alignment explanation
Indices: 102310162--102310406 Score: 454
Period size: 121 Copynumber: 2.0 Consensus size: 121
102310152 AAATGTTGTT
* *
102310162 CATGGCACTGCAGGGTATGTAATATTCCACTACTTCATAGCTTATTTAGCATTATCCACTCTATA
1 CATGGCACTGCAGGGTATGAAATATTCCACTACTTCATAGCTTATTTACCATTATCCACTCTATA
102310227 ACGCTCCTCAAACTCTTTAGTTTCCCTAAAGTATCAATGTCCAACACATATTCCAA
66 ACGCTCCTCAAACTCTTTAGTTTCCCTAAAGTATCAATGTCCAACACATATTCCAA
*
102310283 CATGGCACTGCAGGGTATGAAATATTCCACTACTTCATAGCTTATTTACCATTATCTACTCTATA
1 CATGGCACTGCAGGGTATGAAATATTCCACTACTTCATAGCTTATTTACCATTATCCACTCTATA
*
102310348 ACGCTCCTCAAACTCTTTAGTTTCCCTAAAGTATCAATGTCCAACACATTTTCCAA
66 ACGCTCCTCAAACTCTTTAGTTTCCCTAAAGTATCAATGTCCAACACATATTCCAA
102310404 CAT
1 CAT
102310407 AGTTACGAGT
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (121 bp):
CATGGCACTGCAGGGTATGAAATATTCCACTACTTCATAGCTTATTTACCATTATCCACTCTATA
ACGCTCCTCAAACTCTTTAGTTTCCCTAAAGTATCAATGTCCAACACATATTCCAA
Found at i:102312880 original size:11 final size:10
Alignment explanation
Indices: 102312854--102312891 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
102312844 GCAATTGACC
102312854 ATTTTT-ATA
1 ATTTTTAATA
*
102312863 GTTTTTAATA
1 ATTTTTAATA
102312873 ACTTTTTAATA
1 A-TTTTTAATA
102312884 ATTTTTAA
1 ATTTTTAA
102312892 AAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 5 0.20
10 10 0.40
11 10 0.40
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:102313521 original size:32 final size:31
Alignment explanation
Indices: 102313460--102313525 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 31
102313450 TTAATAAAAC
*
102313460 TTTTTATATAATTTTTTTATTTTTAAAAATAT
1 TTTTTATATAATTTTTATATTTTTAAAAAT-T
102313492 TTTTTATATAATTTTTAATATTTTT-AAAATT
1 TTTTTATATAATTTTT-ATATTTTTAAAAATT
102313523 TTT
1 TTT
102313526 GAAAATTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 4 0.12
32 21 0.66
33 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
TTTTTATATAATTTTTATATTTTTAAAAATT
Found at i:102316279 original size:20 final size:20
Alignment explanation
Indices: 102316256--102316296 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
102316246 ATGAAATAAT
102316256 AAAAGAATAAAAAGAA-AGAC
1 AAAAGAA-AAAAAGAAGAGAC
*
102316276 AAAAGAAACAAAGAAGAGAC
1 AAAAGAAAAAAAGAAGAGAC
102316296 A
1 A
102316297 GAACAGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.73, C:0.07, G:0.17, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAAAGAAGAGAC
Found at i:102324669 original size:9 final size:9
Alignment explanation
Indices: 102324657--102324688 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
102324647 ACAAATATTA
102324657 AAAATAAAC
1 AAAATAAAC
102324666 AAAATAAAC
1 AAAATAAAC
102324675 AAAATAAAC
1 AAAATAAAC
102324684 AAAAT
1 AAAAT
102324689 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:102325864 original size:23 final size:23
Alignment explanation
Indices: 102325838--102325884 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
102325828 AGTTGTTCAT
102325838 AATAGTTTGAGAAAGGTTGAATA
1 AATAGTTTGAGAAAGGTTGAATA
102325861 AATAGTTTGAGAAAGGTTGAATA
1 AATAGTTTGAGAAAGGTTGAATA
102325884 A
1 A
102325885 CTTACTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.30
Consensus pattern (23 bp):
AATAGTTTGAGAAAGGTTGAATA
Found at i:102329795 original size:23 final size:23
Alignment explanation
Indices: 102329760--102329821 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
102329750 GATTATTTTT
102329760 ATATAAAAATAAAT-T-TTAAAA
1 ATATAAAAATAAATATATTAAAA
102329781 ATATAATAAATTAAATATATTAAAA
1 ATATAA-AAA-TAAATATATTAAAA
*
102329806 ATATTAAAATAAATAT
1 ATATAAAAATAAATAT
102329822 TTTTCAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 6 0.17
22 3 0.08
23 12 0.33
24 4 0.11
25 11 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
ATATAAAAATAAATATATTAAAA
Found at i:102334611 original size:14 final size:15
Alignment explanation
Indices: 102334594--102334635 Score: 63
Period size: 14 Copynumber: 3.0 Consensus size: 15
102334584 CACCAAAACC
102334594 AAAACCAAAAA-AAT
1 AAAACCAAAAATAAT
102334608 AAAA-CAAAAATAAT
1 AAAACCAAAAATAAT
102334622 AAAACC-AAAATAAT
1 AAAACCAAAAATAAT
102334636 TTAAAGGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.23
14 19 0.73
15 1 0.04
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAACCAAAAATAAT
Found at i:102335932 original size:13 final size:13
Alignment explanation
Indices: 102335914--102335938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102335904 TTATACATTT
102335914 TAAATTACTTTGA
1 TAAATTACTTTGA
102335927 TAAATTACTTTG
1 TAAATTACTTTG
102335939 TTTTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
TAAATTACTTTGA
Found at i:102339401 original size:29 final size:30
Alignment explanation
Indices: 102339354--102339421 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
102339344 TGGCTCAAGA
* *
102339354 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
102339384 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
102339414 GCAAATAT
1 GTAAATAT
102339422 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:102341904 original size:46 final size:46
Alignment explanation
Indices: 102341852--102342127 Score: 341
Period size: 46 Copynumber: 6.0 Consensus size: 46
102341842 GTGCTCTCTA
102341852 ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAATC-TG
1 ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAA-CATG
* *
102341898 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATG
102341944 ATATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
102341990 ACA-GAAA-ATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATATG--TAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
102342036 ATATGAAATGA-ATAAGACTATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * * *
102342082 ACA-GAAA-ATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATATGAAATAT--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
102342128 TCAAAGATAA
Statistics
Matches: 203, Mismatches: 16, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
43 2 0.01
44 1 0.00
45 9 0.04
46 186 0.92
47 4 0.02
49 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:102342009 original size:92 final size:92
Alignment explanation
Indices: 102341852--102342122 Score: 422
Period size: 92 Copynumber: 2.9 Consensus size: 92
102341842 GTGCTCTCTA
* *
102341852 ATATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAATC-TGATATG-AAATGTGTAAG
1 ATATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAA-CATGACA-GAAAATGAGTAAG
102341914 ACCATGGTTGAAAGATACCATGGCAACGTG
63 ACCATGGTTGAAAGATACCATGGCAACGTG
*
102341944 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAGACC
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACC
102342009 ATGGTTGAAAGATACCATGGCAACGTG
66 ATGGTTGAAAGATACCATGGCAACGTG
* *
102342036 ATATGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACC
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACC
* * *
102342101 ATAGTTGAAAGACACTATGGCA
66 ATGGTTGAAAGATACCATGGCA
102342123 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
91 2 0.01
92 164 0.98
93 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (92 bp):
ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACC
ATGGTTGAAAGATACCATGGCAACGTG
Found at i:102342112 original size:138 final size:138
Alignment explanation
Indices: 102341864--102342127 Score: 415
Period size: 138 Copynumber: 1.9 Consensus size: 138
102341854 ATGAAATATG
**
102341864 TAAGACCATGGTTGAAAGATACCATGGCAATCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAATCTGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * *
102341929 TACCATGGCAACGTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
66 TACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAG
102341994 AAAATGAA
131 AAAATGAA
*
102342002 TAAGACCATGGTTGAAAGATACCATGGCAA-CGTGATATGAAATGAATAAGACTATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAATC-TGATATGAAATGAATAAGACCATGGTTGAAAG
* *
102342066 ATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
65 ATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATG
102342128 TCAAAGATAA
Statistics
Matches: 115, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
137 2 0.02
138 113 0.98
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAATCTGATATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAG
AAAATGAA
Found at i:102343169 original size:22 final size:22
Alignment explanation
Indices: 102343141--102343185 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102343131 ATTTAGATTG
102343141 ATTTGGATATTATAAGTGAAGT
1 ATTTGGATATTATAAGTGAAGT
102343163 ATTTGGATATTATAAGTGAAGT
1 ATTTGGATATTATAAGTGAAGT
102343185 A
1 A
102343186 CATGAGGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.40
Consensus pattern (22 bp):
ATTTGGATATTATAAGTGAAGT
Found at i:102346748 original size:20 final size:21
Alignment explanation
Indices: 102346715--102346754 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
102346705 ACACGGCCAA
* *
102346715 GACACACGCTTGTGT-TCTGG
1 GACACACACCTGTGTCTCTGG
102346735 GACACACACCTGTGTCTCTG
1 GACACACACCTGTGTCTCTG
102346755 CCCGTGTGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (21 bp):
GACACACACCTGTGTCTCTGG
Found at i:102348114 original size:24 final size:24
Alignment explanation
Indices: 102348069--102348116 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
102348059 CGCTGAACCA
*
102348069 TATAACGGGAAGCTCGAGAGAGCT
1 TATAACGGGAAGCTCGAAAGAGCT
*
102348093 TATAACGGGATGCTC-ATAAGAGCT
1 TATAACGGGAAGCTCGA-AAGAGCT
102348117 ATGGTGTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (24 bp):
TATAACGGGAAGCTCGAAAGAGCT
Found at i:102355951 original size:256 final size:256
Alignment explanation
Indices: 102355483--102355951 Score: 688
Period size: 256 Copynumber: 1.8 Consensus size: 256
102355473 TGAAATGGAT
* * *
102355483 ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACATAGGACACAACATTTCAA
1 ATTAAGATTCTCTTATTTCAAAGAAATAAAATATCACATCCAACACATAGGACACAACATTTCAA
* * * * *
102355548 ACCTTCGATATCAAAATCATCTCATAGTTTCCAAATTTATGTATTGAAATTTTAAGAATGATACT
66 ACCTTCGATATCAAAATCAACTCATAATTTCCAAATTTACGCATTGAAATTTTAAGAAGGATACT
* * *
102355613 CGGTCATTCGGTCAAACGATAAATCGAAACCCAGCACGTAGAGCACAATTTCTCGAAAATTCCAA
131 CAGTCATTCGGTCAAACGATAAATCGAAACACAACACGTAGAGCACAATTTCTCGAAAATTCCAA
* **
102355678 ACAACGGAATGTTGCCTTGTTTTCTAAAAAGTCTTGAGTAAAAATGTAATAGTATGAAACG
196 ACAACGAAACATTGCCTTGTTTTCTAAAAAGTCTTGAGTAAAAATGTAATAGTATGAAACG
* * *
102355739 ATTAAGATTCTCTTATTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTCAA
1 ATTAAGATTCTCTTATTTCAAAGAAATAAAATATCACATCCAACACATAGGACACAACATTTCAA
*
102355804 ACCTTCGATATCAAAATCAACTCATAATTTCCAAATTTACGCATTGAAATTTTAAGAAGGATATT
66 ACCTTCGATATCAAAATCAACTCATAATTTCCAAATTTACGCATTGAAATTTTAAGAAGGATACT
** * * * * **
102355869 CAGTTGTTTGGTCAAACGATAAATCGAAACACAACATGTAGGGCACAATTTTCTCGAAATTTTTA
131 CAGTCATTCGGTCAAACGATAAATCGAAACACAACACGTAGAGCACAA-TTTCTCGAAAATTCCA
102355934 AAC-ACGAAACATTGCCTT
195 AACAACGAAACATTGCCTT
102355952 TCTTTGAATA
Statistics
Matches: 186, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
256 170 0.91
257 16 0.09
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (256 bp):
ATTAAGATTCTCTTATTTCAAAGAAATAAAATATCACATCCAACACATAGGACACAACATTTCAA
ACCTTCGATATCAAAATCAACTCATAATTTCCAAATTTACGCATTGAAATTTTAAGAAGGATACT
CAGTCATTCGGTCAAACGATAAATCGAAACACAACACGTAGAGCACAATTTCTCGAAAATTCCAA
ACAACGAAACATTGCCTTGTTTTCTAAAAAGTCTTGAGTAAAAATGTAATAGTATGAAACG
Found at i:102357981 original size:19 final size:19
Alignment explanation
Indices: 102357944--102357982 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
102357934 GGGCCTATAA
*
102357944 GAATTGGGTTAGGGGTTTG
1 GAATTGGGTTAGGAGTTTG
* *
102357963 GAATTGGGTTCGGATTTTG
1 GAATTGGGTTAGGAGTTTG
102357982 G
1 G
102357983 GCTGTTGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.03, G:0.44, T:0.38
Consensus pattern (19 bp):
GAATTGGGTTAGGAGTTTG
Found at i:102365303 original size:53 final size:53
Alignment explanation
Indices: 102365223--102365328 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
102365213 ACTTGCGTTA
102365223 GCAAATCTCGTGTTCATTCTTCTCCTTCTCTTTTTTGCTTGTTGCCCGTGTTC
1 GCAAATCTCGTGTTCATTCTTCTCCTTCTCTTTTTTGCTTGTTGCCCGTGTTC
102365276 GCAAATCTCGTGTTCATTCTTCTCCTTCTCTTTTTTGCTTGTTGCCCGTGTTC
1 GCAAATCTCGTGTTCATTCTTCTCCTTCTCTTTTTTGCTTGTTGCCCGTGTTC
102365329 CGATTAAACT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.08, C:0.28, G:0.15, T:0.49
Consensus pattern (53 bp):
GCAAATCTCGTGTTCATTCTTCTCCTTCTCTTTTTTGCTTGTTGCCCGTGTTC
Found at i:102369980 original size:22 final size:21
Alignment explanation
Indices: 102369952--102370022 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 21
102369942 GGTGTAAAGT
102369952 AAAAAATATTGAAAGACTTGA
1 AAAAAATATTGAAAGACTTGA
* *
102369973 AAATAAATATT-ATTA-ACTT-T
1 AAA-AAATATTGA-AAGACTTGA
*
102369993 AAAAAATATTGAAGGACTTGA
1 AAAAAATATTGAAAGACTTGA
102370014 AAACAAATA
1 AAA-AAATA
102370023 CTATTAACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
19 7 0.18
20 8 0.21
21 11 0.28
22 13 0.33
ACGTcount: A:0.56, C:0.06, G:0.10, T:0.28
Consensus pattern (21 bp):
AAAAAATATTGAAAGACTTGA
Found at i:102370011 original size:41 final size:41
Alignment explanation
Indices: 102369951--102370034 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
102369941 CGGTGTAAAG
* *
102369951 TAAAAAATATTGAAAGACTTGAAAATAAATATTATTAACTT
1 TAAAAAATATTGAAAGACTTGAAAACAAATACTATTAACTT
*
102369992 TAAAAAATATTGAAGGACTTGAAAACAAATACTATTAACTT
1 TAAAAAATATTGAAAGACTTGAAAACAAATACTATTAACTT
102370033 TA
1 TA
102370035 TTAAACAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.32
Consensus pattern (41 bp):
TAAAAAATATTGAAAGACTTGAAAACAAATACTATTAACTT
Found at i:102372523 original size:15 final size:17
Alignment explanation
Indices: 102372490--102372524 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
102372480 TTTTGCATAT
102372490 ATAATCTGATTTCTTTA
1 ATAATCTGATTTCTTTA
102372507 ATAAT-TGATTT-TTTA
1 ATAATCTGATTTCTTTA
102372522 ATA
1 ATA
102372525 TTTTGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 6 0.33
17 5 0.28
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (17 bp):
ATAATCTGATTTCTTTA
Found at i:102379556 original size:13 final size:13
Alignment explanation
Indices: 102379538--102379563 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102379528 GGGCCACCCC
102379538 CAAAACCCAATAA
1 CAAAACCCAATAA
102379551 CAAAACCCAATAA
1 CAAAACCCAATAA
102379564 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:102380396 original size:11 final size:11
Alignment explanation
Indices: 102380380--102380414 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
102380370 CCCTTCCCCC
102380380 CTCCCTTCTCT
1 CTCCCTTCTCT
102380391 CTCCCTTCTCT
1 CTCCCTTCTCT
102380402 CTTCCC-TCTCT
1 C-TCCCTTCTCT
102380413 CT
1 CT
102380415 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:102387850 original size:72 final size:72
Alignment explanation
Indices: 102387658--102388775 Score: 1715
Period size: 72 Copynumber: 15.5 Consensus size: 72
102387648 TGATGCTTTT
* *
102387658 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACACGTGGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
102387722 TAATTTCA
65 TAATTTCA
*
102387730 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGATAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
102387795 TAATTTCA
65 TAATTTCA
*
102387803 ATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
102387868 AATTTCA
66 AATTTCA
* *
102387875 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAAACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
102387940 ATTTTCA
66 AATTTCA
*
102387947 ATTTCTGCTTTTCAAAATTCAACTCATATTGC--GAAATGAGTTGAGCCTTAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
102388010 TAATTTCA
65 TAATTTCA
* * * * *
102388018 ATTTTTGTTTTCAAAATTCAACTCATATTGCGATAAATGAGTTGAGTCTTAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
102388083 AATTTCA
66 AATTTCA
*
102388090 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
102388155 ATTTTCA
66 AATTTCA
102388162 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
102388227 TAATTTCA
65 TAATTTCA
* **
102388235 ATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
102388300 AATTTCA
66 AATTTCA
* *
102388307 ATTT-TATTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
102388371 AATTTCA
66 AATTTCA
* *
102388378 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTTAGAT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
102388443 ATTTTCA
66 AATTTCA
102388450 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
102388515 TAATTTTA
65 TAATTTCA
* *
102388523 ATTT-TGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
102388587 ATTTTCA
66 AATTTCA
* * ** * *
102388594 ATTTTTGCTTTTCAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
102388659 TAATTTCA
65 TAATTTCA
* * ** * **
102388667 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGGCACGCCGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
102388732 ATTTTCA
66 AATTTCA
* * ** *
102388739 AATTCTACTTTAAAAAAAATCAACTCATATTGCGAGA
1 ATTTCT-GTTT-TCAAAATTCAACTCATATTGCGAGA
102388776 GGTGGTTGAA
Statistics
Matches: 969, Mismatches: 65, Indels: 22
0.92 0.06 0.02
Matches are distributed among these distances:
70 24 0.02
71 173 0.18
72 458 0.47
73 287 0.30
74 27 0.03
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCA
Found at i:102388540 original size:432 final size:434
Alignment explanation
Indices: 102387658--102389577 Score: 2093
Period size: 432 Copynumber: 4.4 Consensus size: 434
102387648 TGATGCTTTT
** * *
102387658 ATTTCTGTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACACGTGGAGGT
1 ATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * **
102387723 AATTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGATAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * *
102387788 GTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
131 GCTGAGGTAATTTCAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
** * *
102387853 AAGACACGTTGAGGTAATTTC-AATTTCT-GTTTTCAAAATTCAACTCATATTGCGAGAAATGAG
196 AAGACACGCCGAGGTAATTTCTAATTT-TATTTTTAAAAATTCAACTCATATTGCGAGAAATGAG
* *
102387916 TTGAGCCTCAAAACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGC--
260 TTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGA
* *
102387979 GAAATGAGTTGAGCCTTAAGACACGTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCAT
324 GAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
* * *
102388044 ATTGCGATAAATGAGTTGAGTCTTAAGACACATTGAGGTAATTTCA
389 ATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
* *
102388090 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
**
102388155 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * *
102388220 GTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
131 GCTGAGGTAATTTCAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
** * *
102388285 AAGACACGTTGAGGTAATTTC-AATTTTA-TTTTCAAAATTCAACTCATATTGCAAGAAATGAGT
196 AAGACACGCCGAGGTAATTTCTAATTTTATTTTTAAAAATTCAACTCATATTGCGAGAAATGAGT
*
102388348 TGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGA
261 TGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGA
* * *
102388413 AATGAGTTGAGCCTCAAGACACGTTTAGATATTTTCAATTTCTGCTTTTCAAAATTCAACTCATA
326 AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATA
* *
102388478 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTA
390 TTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
*
102388523 ATTT-TGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * *
102388587 ATTTTCAATTTTTGCTTTTCAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
102388652 GCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
131 GCTGAGGTAATTTCAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
** * * * * ** *
102388717 GGGGCACGCCGAGGTATTTTCAAATTCTACTTTAAAAAAAATCAACTCATATTGCGAG--A-G-G
196 AAGACACGCCGAGGTAATTTCTAATTTTA-TTTTTAAAAATTCAACTCATATTGCGAGAAATGAG
* * * * *
102388778 -TG-G--T--TGA-ACCTT---TTAATTTC---TAC-GTTTT-TAAA-TCAACTCATATTGCGAG
260 TTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAG
** * * * * *
102388827 AGGTGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACT
325 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT-TT---CAAAATTCAACT
* **
102388892 CATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
386 CATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
* * ** * *
102388941 ATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACAC--TG
1 ATTTCTGTTTT--TAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGTTG
*
102389004 TGGTATTTT-AA----------T-----TTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
62 AGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--
* * *
102389053 ACACACGCCGAGGTATTTTCAATTAAGCCTTTTGATTTCTGTTTTTCAAAAAATCAACTCATATT
125 AGACACGCTGAGGTAATTTC----AA------T--TTT-TG-TTTTC-AAAAATCAACTCATATT
* * * * *
102389118 GCGAGAAATGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTTTCATTATTATGT
175 GCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTA------ATTTC-----TAATT-TTA--T
102389183 TTTTGAAAGAATT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTT
226 TTTT-AAA-AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTT
*
102389247 CAATTTCTG-TTTCAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGA
289 CAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
102389311 GGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
353 GGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
102389376 ACATTGAGGTATTTTTA
418 ACATTGAGGTAATTTCA
* * * ** * *
102389393 ATTT-TTTACTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGT--TTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
* * **
102389457 GGTAATTTCAATTTCTGTTTTTCAAAAATT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
63 GGTATTTTCAATTTCTGCTTTTC-AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
* * * * ** *
102389521 GCACGCCGAGGTATTTTCAAATTCTACTTTTAAAAAAATCAACTCATATTGCGAGAG
127 ACACGCTGAGGTAATTTC-AATTTTTGTTTT-CAAAAATCAACTCATATTGCGAGAG
102389578 GTGGGTTTAA
Statistics
Matches: 1270, Mismatches: 126, Indels: 163
0.81 0.08 0.10
Matches are distributed among these distances:
405 34 0.03
407 16 0.01
410 1 0.00
411 2 0.00
414 2 0.00
415 56 0.04
416 3 0.00
417 6 0.00
418 62 0.05
419 8 0.01
420 4 0.00
421 57 0.04
422 51 0.04
423 4 0.00
424 4 0.00
425 2 0.00
427 1 0.00
428 4 0.00
429 1 0.00
430 26 0.02
431 70 0.06
432 447 0.35
433 74 0.06
434 2 0.00
435 25 0.02
436 18 0.01
437 3 0.00
438 1 0.00
439 1 0.00
440 1 0.00
441 2 0.00
442 1 0.00
444 1 0.00
446 2 0.00
447 4 0.00
450 11 0.01
451 2 0.00
452 104 0.08
453 37 0.03
454 1 0.00
455 7 0.01
456 58 0.05
457 1 0.00
463 3 0.00
466 17 0.01
468 31 0.02
469 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (434 bp):
ATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
AAGACACGCCGAGGTAATTTCTAATTTTATTTTTAAAAATTCAACTCATATTGCGAGAAATGAGT
TGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGA
AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
TGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
Found at i:102388974 original size:202 final size:201
Alignment explanation
Indices: 102388612--102389171 Score: 673
Period size: 202 Copynumber: 2.7 Consensus size: 201
102388602 TTTTCAAAAC
102388612 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
* * * * *
102388676 TTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAA
66 TTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAAT
** * *
102388741 TTCTACTTTAAAAAAAATCAACTCATATTGCGAGAGGTG-GTTGAACCTTTTA-ATTTCTAC-GT
131 TTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-ACC-TTCAGATTAC-ACGGT
102388803 -TTTTAA-A
193 ATTTTAATA
*
102388810 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
* *
102388875 TTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TT---AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
*
102388940 AATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACTGT
128 AATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCTTCAGATTACAC---
*
102389005 GGTATTTTAATT
190 GGTATTTTAATA
* *
102389017 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGCC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTC-----A---
* * *
102389082 TTTTGATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACA
56 -----ATTTCTGTTGTT-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACG
*
102389147 CCGAGGTATTTTCCATTTCTGTTTT
115 CCGAGGTATTTTCAATTTCTGTTTT
102389172 CATTATTATG
Statistics
Matches: 311, Mismatches: 24, Indels: 32
0.85 0.07 0.09
Matches are distributed among these distances:
198 63 0.20
199 2 0.01
201 5 0.02
202 99 0.32
203 4 0.01
205 2 0.01
206 6 0.02
207 36 0.12
209 15 0.05
214 1 0.00
220 67 0.22
222 11 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (201 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
TTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAAT
TTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCTTCAGATTACACGGTATT
TTAATA
Found at i:102389212 original size:88 final size:86
Alignment explanation
Indices: 102389017--102389258 Score: 288
Period size: 88 Copynumber: 2.8 Consensus size: 86
102389007 TATTTTAATT
** *
102389017 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * *
102389081 CTTTTGATTTCTGTTTTTCAAAAAA
62 GTTTTCATTTATGTTTTTCAAAAAA
* *
102389106 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
* *
102389171 TCATTATTATGTTTTTGAAAGAA
66 TCA-T-TTATGTTTTTCAAAAAA
* * ** *
102389194 TTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
102389259 CAAAAATTCA
Statistics
Matches: 133, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
85 1 0.01
86 5 0.04
87 17 0.13
88 72 0.54
89 38 0.29
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (86 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTATGTTTTTCAAAAAA
Found at i:102389451 original size:74 final size:72
Alignment explanation
Indices: 102389196--102389576 Score: 467
Period size: 72 Copynumber: 5.2 Consensus size: 72
102389186 TGAAAGAATT
* *
102389196 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCT-GTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTCTTTTC
102389260 AAAAATTC
66 AAAAA-TC
* *
102389268 AACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTCTTTTC
*
102389333 AAAATTC
66 AAAAATC
* * * *
102389340 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTTAATTTTTTACTTT
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA-TTTCT-CTTT
102389405 TCAAAAATC
64 TCAAAAATC
* ** * * *
102389414 AACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTT
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT-CTTTT
*
102389479 CAAAAATT
65 CAAAAATC
** ** * ** * *
102389487 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTT
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT-CTTTT
*
102389552 AAAAAAATC
65 -CAAAAATC
102389561 AACTCATATTGCGAGA
1 AACTCATATTGCGAGA
102389577 GGTGGGTTTA
Statistics
Matches: 272, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
72 109 0.40
73 84 0.31
74 79 0.29
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (72 bp):
AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTCTTTTC
AAAAATC
Found at i:102389986 original size:217 final size:216
Alignment explanation
Indices: 102389554--102389962 Score: 550
Period size: 217 Copynumber: 1.9 Consensus size: 216
102389544 CTACTTTTAA
* **
102389554 AAAAATCAACTCATATTGCGAGAGGTGGGTTTAACCTTTTAATTTCTACTTTTTCAAAATCAGGT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
* * * ** * * *******
102389619 CATATTTCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTTTTTGTGTGTTTT
66 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTTTTGTCAAAAAA
** * *
102389684 AATTTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCACATGCCAAGGTATTTTCAAAAT
131 AAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCAAAAT
102389749 CTATTTGGCAAATTCTGTTTTC
196 CTATTT-GCAAATTCTGTTTTC
*
102389771 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTGAAAATCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
102389836 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
66 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTT-T-TTGTCAAAA
** * *
102389901 AAAAAATCAACTCATATTGCGA-AAGTAAGTTGAGCCTTTGTTCACATGCTAAGATATTTTCA
129 AAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCA
102389963 GTTTTTGTTT
Statistics
Matches: 164, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
217 107 0.65
218 35 0.21
219 22 0.13
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (216 bp):
AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTTTTGTCAAAAAA
AAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCAAAAT
CTATTTGCAAATTCTGTTTTC
Found at i:102390562 original size:13 final size:13
Alignment explanation
Indices: 102390544--102390569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102390534 GGGCCACCCC
102390544 CAAAACCCAATAA
1 CAAAACCCAATAA
102390557 CAAAACCCAATAA
1 CAAAACCCAATAA
102390570 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:102391385 original size:11 final size:11
Alignment explanation
Indices: 102391369--102391403 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
102391359 CCCTTCCCCC
102391369 CTCCCTTCTCT
1 CTCCCTTCTCT
102391380 CTCCCTTCTCT
1 CTCCCTTCTCT
102391391 CTTCCC-TCTCT
1 C-TCCCTTCTCT
102391402 CT
1 CT
102391404 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:102398198 original size:29 final size:30
Alignment explanation
Indices: 102398143--102398208 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
102398133 ATTTAACATA
* *
102398143 TAATTGTATACATAAACTTTGATTTTG-TG
1 TAATTTTATACATAAACTTTGATTTTGATC
*
102398172 TAATTTTATACATCAAATTTTGA-TTTGATC
1 TAATTTTATACAT-AAACTTTGATTTTGATC
102398202 TAATTTT
1 TAATTTT
102398209 TGTAATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.52
Consensus pattern (30 bp):
TAATTTTATACATAAACTTTGATTTTGATC
Found at i:102401816 original size:24 final size:22
Alignment explanation
Indices: 102401768--102401820 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
102401758 CCCTTCATAT
* *
102401768 ATATTT-ATTTTTTTTATTTTT
1 ATATTTAATTTTTTTTAATTTA
102401789 ATATTTAATTTTTTTCTTAATTTA
1 ATATTTAA-TTTTTT-TTAATTTA
102401813 ATATTTAA
1 ATATTTAA
102401821 AATATTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 1 0.04
23 6 0.22
24 14 0.52
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
ATATTTAATTTTTTTTAATTTA
Found at i:102401998 original size:20 final size:20
Alignment explanation
Indices: 102401957--102401996 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102401947 AATTAGATTT
*
102401957 ATTTAAAATAAAAATATTAA
1 ATTTAAAATAAAAATATAAA
*
102401977 ATTTAAATTAAAAA-ATAAA
1 ATTTAAAATAAAAATATAAA
102401996 A
1 A
102401997 ATGTATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTAAAATAAAAATATAAA
Found at i:102402322 original size:20 final size:21
Alignment explanation
Indices: 102402297--102402346 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
102402287 AATTTTTTAA
*
102402297 TATTTAAATATTTAAT-TTTT
1 TATTTAAATATTTAATACTTT
102402317 TATTT-AA-ATTTAATACTTT
1 TATTTAAATATTTAATACTTT
102402336 TATTTTAAATA
1 TA-TTTAAATA
102402347 AACCTATTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 7 0.28
19 7 0.28
20 8 0.32
21 2 0.08
22 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTAAATATTTAATACTTT
Found at i:102413713 original size:25 final size:27
Alignment explanation
Indices: 102413685--102413753 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 27
102413675 AAATGTGGAC
*
102413685 AACCATAAAATTATAGAC-AAAA-TAA
1 AACCATAAAATTATAAACTAAAATTAA
102413710 AACCATGAAAA-TATAAACTAAAATTAA
1 AACCAT-AAAATTATAAACTAAAATTAA
102413737 AA--ATAAAA-TA-AAACTAA
1 AACCATAAAATTATAAACTAA
102413754 GAAAAAAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
23 7 0.17
24 6 0.15
25 14 0.35
26 8 0.20
27 5 0.12
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (27 bp):
AACCATAAAATTATAAACTAAAATTAA
Found at i:102413748 original size:17 final size:17
Alignment explanation
Indices: 102413703--102413766 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
102413693 AATTATAGAC
102413703 AAAATAAAACCATGAAAATAT
1 AAAATAAAA-C-T-AAAA-AT
* *
102413724 AAACTAAAATTAAAAAT
1 AAAATAAAACTAAAAAT
*
102413741 AAAATAAAACTAAGAAAA
1 AAAATAAAACTAA-AAAT
102413759 AAAATAAA
1 AAAATAAA
102413767 TGTTAGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 13 0.35
18 15 0.41
19 1 0.03
21 8 0.22
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAATAAAACTAAAAAT
Found at i:102413752 original size:23 final size:24
Alignment explanation
Indices: 102413717--102413766 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
102413707 TAAAACCATG
*
102413717 AAAATATAAACTAA-AATTAAAAAT
1 AAAATATAAACTAAGAA-AAAAAAT
102413741 AAAATA-AAACTAAGAAAAAAAAT
1 AAAATATAAACTAAGAAAAAAAAT
102413764 AAA
1 AAA
102413767 TGTTAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (24 bp):
AAAATATAAACTAAGAAAAAAAAT
Found at i:102415946 original size:22 final size:22
Alignment explanation
Indices: 102415921--102415964 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
102415911 TTATGGCCAA
102415921 AAAATTTATTATAAAAAATAAT
1 AAAATTTATTATAAAAAATAAT
102415943 AAAATTTATTATAAAAAATAAT
1 AAAATTTATTATAAAAAATAAT
102415965 TTACATGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATTTATTATAAAAAATAAT
Found at i:102422291 original size:23 final size:23
Alignment explanation
Indices: 102422261--102422309 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
102422251 ATTGAAACAA
102422261 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
102422284 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
102422307 CAT
1 CAT
102422310 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (23 bp):
CATAATGATAGCTAATATGCTTT
Found at i:102430661 original size:15 final size:15
Alignment explanation
Indices: 102430641--102430671 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102430631 TAAAATAAAA
102430641 AGTCTATTTATTTCT
1 AGTCTATTTATTTCT
102430656 AGTCTATTTATTTCT
1 AGTCTATTTATTTCT
102430671 A
1 A
102430672 ATAGTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (15 bp):
AGTCTATTTATTTCT
Found at i:102431020 original size:39 final size:40
Alignment explanation
Indices: 102430977--102431055 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
102430967 GTGAACTACT
*
102430977 TAGTT-GTCACCCAATTTTTAAGGTGCTTTTATTTTAATC
1 TAGTTAGTCACCCAATTTTTAAGGTACTTTTATTTTAATC
102431016 TAGTTAGTCACCCAATTTTTAAGGTACTTTTATTTTAATC
1 TAGTTAGTCACCCAATTTTTAAGGTACTTTTATTTTAATC
102431056 ACTAAACATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 5 0.13
40 33 0.87
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.48
Consensus pattern (40 bp):
TAGTTAGTCACCCAATTTTTAAGGTACTTTTATTTTAATC
Found at i:102438324 original size:18 final size:18
Alignment explanation
Indices: 102438283--102438324 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
102438273 AATTAACACT
102438283 AATA-TAATTAATTTTAA
1 AATATTAATTAATTTTAA
* *
102438300 ATTTATTAATTATTTTTAA
1 A-ATATTAATTAATTTTAA
102438319 AATATT
1 AATATT
102438325 TTGTGATTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 1 0.05
18 6 0.30
19 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
AATATTAATTAATTTTAA
Found at i:102443381 original size:25 final size:26
Alignment explanation
Indices: 102443329--102443381 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
102443319 TTTTCGTTGA
* * *
102443329 AAAAAAATGAATTATTAAATATGTTT
1 AAAAAAATAAATTATTAAAAATGATT
*
102443355 AAAAAATTAAATTATTAAAAAT-ATT
1 AAAAAAATAAATTATTAAAAATGATT
102443380 AA
1 AA
102443382 TTTTAATTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (26 bp):
AAAAAAATAAATTATTAAAAATGATT
Found at i:102443570 original size:24 final size:26
Alignment explanation
Indices: 102443536--102443592 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
102443526 CATAAATTTA
*
102443536 AAATATTTAA-TTTTAATT-AAAGTC
1 AAATATATAATTTTTAATTAAAAGTC
*
102443560 AAATATATAATTTTTATTTAAAAAGTC
1 AAATATATAATTTTTAATT-AAAAGTC
102443587 AAATAT
1 AAATAT
102443593 TTTTTAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 9 0.32
25 7 0.25
27 12 0.43
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (26 bp):
AAATATATAATTTTTAATTAAAAGTC
Found at i:102444695 original size:6 final size:6
Alignment explanation
Indices: 102444684--102444726 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
102444674 TCCATCCCCT
* * *
102444684 CTCTCC CTCTCC CTCTCC TTCTCC TTCTCC TTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C
102444727 CTTACCCTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (6 bp):
CTCTCC
Found at i:102458589 original size:40 final size:40
Alignment explanation
Indices: 102458532--102458627 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
102458522 ATGACAAAGA
102458532 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
102458573 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
102458613 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
102458628 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:102461501 original size:6 final size:6
Alignment explanation
Indices: 102461492--102461534 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
102461482 GCTCGAGCTA
102461492 CTCAAG CTCAAG CT--A- CTCAAG CTCAAG CTCAAG CTC-AG CTCAA
1 CTCAAG CTCAAG CTCAAG CTCAAG CTCAAG CTCAAG CTCAAG CTCAA
102461535 TAATTACTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
3 2 0.06
4 1 0.03
5 6 0.18
6 24 0.73
ACGTcount: A:0.33, C:0.35, G:0.14, T:0.19
Consensus pattern (6 bp):
CTCAAG
Done.