Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 312 of 332
Found at i:102461505 original size:15 final size:15
Alignment explanation
Indices: 102461481--102461520 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
102461471 CTCGATCGGT
*
102461481 AGCTCGAGCTACTCA
1 AGCTCAAGCTACTCA
102461496 AGCTCAAGCTACTCA
1 AGCTCAAGCTACTCA
102461511 AGCTCAAGCT
1 AGCTCAAGCT
102461521 CAAGCTCAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (15 bp):
AGCTCAAGCTACTCA
Found at i:102476176 original size:20 final size:20
Alignment explanation
Indices: 102476151--102476200 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
102476141 TGGCTTAAAA
102476151 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
102476171 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
102476188 GTGGTAGTGGATT
1 TTGGTAGTGGATT
102476201 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:102480815 original size:20 final size:20
Alignment explanation
Indices: 102480790--102480839 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
102480780 TGGCTTAAAA
102480790 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
102480810 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
102480827 GTGGTAGTGGATT
1 TTGGTAGTGGATT
102480840 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:102482160 original size:30 final size:30
Alignment explanation
Indices: 102482126--102482185 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
102482116 GTGCTTTTAG
102482126 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
1 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
102482156 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
1 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
102482186 CACATTCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.07, C:0.20, G:0.23, T:0.50
Consensus pattern (30 bp):
TTGGGGCCTGTGGTTCTCTTTACTTACTTT
Found at i:102489261 original size:19 final size:19
Alignment explanation
Indices: 102489237--102489273 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102489227 GCATGACCTC
102489237 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
102489256 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
102489274 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:102491221 original size:26 final size:25
Alignment explanation
Indices: 102491181--102491245 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 25
102491171 AGTAATTGAA
*
102491181 AATATATATTTTATTAAATTATATTT
1 AATA-ATATTATATTAAATTATATTT
102491207 AATAATAATTATATTAAATTATATTT
1 AATAAT-ATTATATTAAATTATATTT
* *
102491233 CATAGTATTATAT
1 AATAATATTATAT
102491246 ATTATGATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.26
26 26 0.74
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
AATAATATTATATTAAATTATATTT
Found at i:102491316 original size:18 final size:17
Alignment explanation
Indices: 102491290--102491324 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102491280 AATATTAAGA
*
102491290 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
102491307 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
102491325 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:102491427 original size:61 final size:60
Alignment explanation
Indices: 102491239--102491429 Score: 156
Period size: 61 Copynumber: 3.2 Consensus size: 60
102491229 ATTTCATAGT
* * * * *
102491239 ATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTAAGTAAATTAATATAAAAATA-TTAATATTAATAATTTTATTAA
* * * * * ** * * *
102491300 ATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAAT-TT-AT-ATTTTA-CAGT
1 ATTATATATTATGATTTAAGTA-AATTAATA-TAAAAATATTAATATTAATAATTTTATTA-A
* *
102491359 ATCATATATTATGATTTCAGTAAATTAATATAAAAATATTAATTATTAATAATTTTATTAA
1 ATTATATATTATGATTTAAGTAAATTAATATAAAAATATTAA-TATTAATAATTTTATTAA
102491420 ATTATATATT
1 ATTATATATT
102491430 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 27, Indels: 16
0.69 0.20 0.12
Matches are distributed among these distances:
57 9 0.09
58 9 0.09
59 24 0.25
60 3 0.03
61 33 0.35
62 12 0.13
63 5 0.05
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (60 bp):
ATTATATATTATGATTTAAGTAAATTAATATAAAAATATTAATATTAATAATTTTATTAA
Found at i:102491438 original size:18 final size:17
Alignment explanation
Indices: 102491410--102491444 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102491400 ATTATTAATA
*
102491410 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
102491427 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
102491445 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:102491444 original size:16 final size:16
Alignment explanation
Indices: 102491406--102491464 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
102491396 ATTAATTATT
102491406 AATA-ATTTT-ATTAA
1 AATATATTTTAATTAA
102491420 ATTATATATTTTAATTAA
1 A--ATATATTTTAATTAA
*
102491438 AATATA-TTTAATAAA
1 AATATATTTTAATTAA
102491453 AAT-TATGTTTAA
1 AATATAT-TTTAA
102491465 ATATGATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
14 3 0.08
15 11 0.29
16 13 0.34
17 5 0.13
18 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
AATATATTTTAATTAA
Found at i:102491459 original size:120 final size:120
Alignment explanation
Indices: 102491183--102491466 Score: 419
Period size: 120 Copynumber: 2.4 Consensus size: 120
102491173 TAATTGAAAA
* * * *
102491183 TATATATTTT-ATTAAATTATATTTAATAATAATTATATTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* * *
102491247 TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAAAATATTTAATATTAAGAATTTTATTAAAT
* * *
102491302 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
102491367 TTATGATTTCAGTAAATTAATATAAAAATA-TTAATTATTAATAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAAAATATTTAA-TATTAAGAATTTTATTAAAT
*
102491422 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
102491467 ATGATTAAAT
Statistics
Matches: 147, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
119 14 0.10
120 128 0.87
121 5 0.03
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAAAATATTTAATATTAAGAATTTTATTAAAT
Found at i:102491701 original size:16 final size:16
Alignment explanation
Indices: 102491680--102491731 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
102491670 GATTTGCTAT
102491680 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
102491696 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
102491712 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102491728 TACA
1 TACA
102491732 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102496426 original size:58 final size:58
Alignment explanation
Indices: 102496336--102496456 Score: 224
Period size: 58 Copynumber: 2.1 Consensus size: 58
102496326 TAATGTGTGG
*
102496336 AAAAAGAAATGTAAATAATGTTATCATTATTTTTTAGCTCAATTAAGTAAATTATTTT
1 AAAAAGAAATGTAAATAATGTTATCATTATTTTTGAGCTCAATTAAGTAAATTATTTT
102496394 AAAAAGAAATGTAAATAATGTTATCATTATTTTTGAGCTCAATTAAGTAAATTATTTT
1 AAAAAGAAATGTAAATAATGTTATCATTATTTTTGAGCTCAATTAAGTAAATTATTTT
*
102496452 TAAAA
1 AAAAA
102496457 TGAGATTATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (58 bp):
AAAAAGAAATGTAAATAATGTTATCATTATTTTTGAGCTCAATTAAGTAAATTATTTT
Found at i:102498123 original size:2 final size:2
Alignment explanation
Indices: 102498116--102498147 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
102498106 TAACGTGGTA
102498116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102498148 ATAAGCAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102500669 original size:46 final size:46
Alignment explanation
Indices: 102500602--102500870 Score: 252
Period size: 46 Copynumber: 5.8 Consensus size: 46
102500592 TATTTGGGCA
*
102500602 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
102500648 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* *
102500693 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
102500741 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * *
102500786 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * * *
102500834 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102500871 GTGGGTTATA
Statistics
Matches: 187, Mismatches: 14, Indels: 44
0.76 0.06 0.18
Matches are distributed among these distances:
42 6 0.03
43 13 0.07
44 2 0.01
45 2 0.01
46 89 0.48
47 54 0.29
48 2 0.01
49 2 0.01
50 11 0.06
51 6 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:102500717 original size:47 final size:47
Alignment explanation
Indices: 102500598--102500816 Score: 224
Period size: 47 Copynumber: 4.7 Consensus size: 47
102500588 AGGATATTTG
*
102500598 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATG-GATGTGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAG-TT-C-GA-GAGATGT-AACTA
102500647 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* *** *
102500691 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
102500734 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
102500784 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
102500817 ACTTATGGAT
Statistics
Matches: 143, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.02
43 8 0.06
44 4 0.03
45 4 0.03
46 58 0.41
47 60 0.42
48 2 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:102500757 original size:93 final size:93
Alignment explanation
Indices: 102500598--102500862 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
102500588 AGGATATTTG
* * *
102500598 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
102500663 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
102500691 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
102500756 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
102500784 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
102500849 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
102500863 ACTTATGGGT
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:102502204 original size:31 final size:29
Alignment explanation
Indices: 102502166--102502243 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
102502156 GGCGTTACAT
*
102502166 AGTGACTAAAATATTACAACACAATAATATA
1 AGTGACTAAAATATAACAACAC-A-AATATA
* ***
102502197 AGTGACTAAAAGATAACATTTCAAATATA
1 AGTGACTAAAATATAACAACACAAATATA
*
102502226 AGTGACTAAAATGTAACA
1 AGTGACTAAAATATAACA
102502244 CGAGGAAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 22 0.55
30 1 0.03
31 17 0.43
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.26
Consensus pattern (29 bp):
AGTGACTAAAATATAACAACACAAATATA
Found at i:102503269 original size:20 final size:20
Alignment explanation
Indices: 102503218--102503269 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
102503208 TTATGCCACA
102503218 TCAATATTCTTATACTGAATT
1 TCAATATT-TTATACTGAATT
* * *
102503239 TCAAGAGTTTATCCTGAATT
1 TCAATATTTTATACTGAATT
102503259 TCAATATTTTA
1 TCAATATTTTA
102503270 ATTTGAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (20 bp):
TCAATATTTTATACTGAATT
Found at i:102507303 original size:43 final size:42
Alignment explanation
Indices: 102507220--102507303 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 42
102507210 AAAAGGAGCT
* *
102507220 AAAAAAATAAATTTTCAGATTTTAATATGAAAAATGAATTTC
1 AAAAAAATAAATTTTCAGATTTTAACATGAAAAATAAATTTC
* *
102507262 AAAAGAAATAATTTTTTAGATTTTAACATGAGAAAA-AAATTT
1 AAAA-AAATAAATTTTCAGATTTTAACATGA-AAAATAAATTT
102507304 TAGACTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 4 0.11
43 28 0.78
44 4 0.11
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (42 bp):
AAAAAAATAAATTTTCAGATTTTAACATGAAAAATAAATTTC
Found at i:102508500 original size:45 final size:47
Alignment explanation
Indices: 102508436--102508528 Score: 118
Period size: 45 Copynumber: 2.0 Consensus size: 47
102508426 AAATGTATAA
* *
102508436 ATAATATAAATTAATTTAATATA-TT-ATTATTAAATACAACAAACT
1 ATAATATAAATTAACTTAATATATTTAATAATTAAATACAACAAACT
* * *
102508481 ATAATTTAATTTAACTTAATATATTTTAATAATTAAATACAATAAACT
1 ATAATATAAATTAACTTAATATA-TTTAATAATTAAATACAACAAACT
102508529 TGTATGATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
45 20 0.50
47 2 0.05
48 18 0.45
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (47 bp):
ATAATATAAATTAACTTAATATATTTAATAATTAAATACAACAAACT
Found at i:102509096 original size:5 final size:6
Alignment explanation
Indices: 102509080--102509105 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102509070 CTAGAGTTCG
102509080 GTTTTT GTTTTT GTTTTT GTTTTT GT
1 GTTTTT GTTTTT GTTTTT GTTTTT GT
102509106 AAATTTATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (6 bp):
GTTTTT
Found at i:102512833 original size:32 final size:32
Alignment explanation
Indices: 102512797--102512862 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
102512787 AGATCCCGGC
102512797 ATAAGATCCAGCAGTTTCCGCCAGAGGCACGG
1 ATAAGATCCAGCAGTTTCCGCCAGAGGCACGG
102512829 ATAAGATCCAGCAGTTTCCGCCAGAGGCACGG
1 ATAAGATCCAGCAGTTTCCGCCAGAGGCACGG
102512861 AT
1 AT
102512863 CTGAGAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.17
Consensus pattern (32 bp):
ATAAGATCCAGCAGTTTCCGCCAGAGGCACGG
Found at i:102518769 original size:22 final size:23
Alignment explanation
Indices: 102518741--102518786 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
102518731 CACGAATAGC
102518741 AGGGAAAGAAAAA-AAAGGAAAA
1 AGGGAAAGAAAAAGAAAGGAAAA
102518763 AGGGAAAGAAAAAGGAAAGGAAAA
1 AGGGAAAGAAAAA-GAAAGGAAAA
102518787 TTTAGGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.59
24 9 0.41
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AGGGAAAGAAAAAGAAAGGAAAA
Found at i:102518774 original size:11 final size:12
Alignment explanation
Indices: 102518743--102518786 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
102518733 CGAATAGCAG
102518743 GGAAA-GAAAAA
1 GGAAAGGAAAAA
102518754 --AAAGGAAAAA
1 GGAAAGGAAAAA
102518764 GGGAAA-GAAAAA
1 -GGAAAGGAAAAA
102518776 GGAAAGGAAAA
1 GGAAAGGAAAA
102518787 TTTAGGGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
9 3 0.11
10 6 0.21
11 5 0.18
12 11 0.39
13 3 0.11
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (12 bp):
GGAAAGGAAAAA
Found at i:102521682 original size:15 final size:15
Alignment explanation
Indices: 102521662--102521713 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
102521652 TTTACTTCAG
102521662 ATTATATTTTAGTCA
1 ATTATATTTTAGTCA
**
102521677 ATTATA-TTT-GAAA
1 ATTATATTTTAGTCA
102521690 TATTATATTTTAGTCA
1 -ATTATATTTTAGTCA
*
102521706 TTTATATT
1 ATTATATT
102521714 ATCGTTTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.31
15 16 0.55
16 2 0.07
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (15 bp):
ATTATATTTTAGTCA
Found at i:102532494 original size:33 final size:33
Alignment explanation
Indices: 102532447--102532560 Score: 115
Period size: 33 Copynumber: 3.5 Consensus size: 33
102532437 GGACTTTTCT
* * *
102532447 TTTTCTAGTTGTACACTCGAGGTGCACATTCCC
1 TTTTCAAGTTGTACACTCGAAGTGCACATACCC
* * *
102532480 TTTTCAAGTGGTACACACGAAGTGTACATACCC
1 TTTTCAAGTTGTACACTCGAAGTGCACATACCC
* * * *
102532513 TTTTCAATTTGTACATTC-AATGTGCACATAACA
1 TTTTCAAGTTGTACACTCGAA-GTGCACATACCC
102532546 TTTTCAAG-TGTACAC
1 TTTTCAAGTTGTACAC
102532561 ATATAGTGTA
Statistics
Matches: 65, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
32 8 0.12
33 57 0.88
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (33 bp):
TTTTCAAGTTGTACACTCGAAGTGCACATACCC
Found at i:102532614 original size:33 final size:33
Alignment explanation
Indices: 102532546--102532684 Score: 122
Period size: 33 Copynumber: 4.3 Consensus size: 33
102532536 GCACATAACA
* * * *
102532546 TTTTCAAGT-GTACACATATAGTGTACCTTTCC
1 TTTTCAAGTGGTATACACAAAGTATACCTTTCC
* *
102532578 TTTTCAAGTGGTATACACCAAGTATACCTTTTC
1 TTTTCAAGTGGTATACACAAAGTATACCTTTCC
*
102532611 TTTTCATA-TGGTATACACAAAGTATACCGTTCC
1 TTTTCA-AGTGGTATACACAAAGTATACCTTTCC
* * * * * **
102532644 TTTCCAAGT-GTACACATAAAGTGTACATAACC
1 TTTTCAAGTGGTATACACAAAGTATACCTTTCC
102532676 TTTTCAAGT
1 TTTTCAAGT
102532685 TGTACCATTT
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
32 34 0.40
33 51 0.59
34 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (33 bp):
TTTTCAAGTGGTATACACAAAGTATACCTTTCC
Found at i:102536049 original size:16 final size:17
Alignment explanation
Indices: 102536012--102536050 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
102536002 ATATTTTTAG
*
102536012 ATTAATTTTTATTTAAA
1 ATTAATTTTTATTAAAA
*
102536029 TTTAATTTTT-TTAAAA
1 ATTAATTTTTATTAAAA
102536045 ATTAAT
1 ATTAAT
102536051 ACACTGTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTAATTTTTATTAAAA
Found at i:102536164 original size:39 final size:39
Alignment explanation
Indices: 102536106--102536193 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
102536096 TAAAAAGTAT
*
102536106 TTATATTTAAAAAATACAAATAAATATAATAAATATTTTA
1 TTATA-TTAAAAAACACAAATAAATATAATAAATATTTTA
* *
102536146 TTATATTAAAGAACACAAATAAATATAGTAAATATTTTA
1 TTATATTAAAAAACACAAATAAATATAATAAATATTTTA
*
102536185 TTTTATTAA
1 TTATATTAA
102536194 TATAAATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 39 0.89
40 5 0.11
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.41
Consensus pattern (39 bp):
TTATATTAAAAAACACAAATAAATATAATAAATATTTTA
Found at i:102536368 original size:29 final size:30
Alignment explanation
Indices: 102536303--102536369 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
102536293 TTAATATAAA
102536303 TATAA-ATATAAATATATATAATAATTATT
1 TATAATATATAAATATATATAATAATTATT
*
102536332 TA-ACATATATAATTA-ATATAAT-ATTATTT
1 TATA-ATATATAAATATATATAATAATTA-TT
102536361 TATAATATA
1 TATAATATA
102536370 ATGTTGGGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
28 5 0.15
29 19 0.58
30 9 0.27
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
TATAATATATAAATATATATAATAATTATT
Found at i:102540001 original size:29 final size:29
Alignment explanation
Indices: 102539933--102540001 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
102539923 AGAAATATTT
* *
102539933 TTATAAAATG-TCTAATGTGGTATTTGTA
1 TTATAAAATGTTCTAATGTGGTACTTGAA
*
102539961 TTTTGAAAATGTTC-AATGTGGTACTTGAA
1 TTAT-AAAATGTTCTAATGTGGTACTTGAA
102539990 TTATAAATATGT
1 TTATAAA-ATGT
102540002 ATTTTTGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
28 6 0.18
29 26 0.76
30 2 0.06
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.45
Consensus pattern (29 bp):
TTATAAAATGTTCTAATGTGGTACTTGAA
Found at i:102540713 original size:29 final size:29
Alignment explanation
Indices: 102540658--102540714 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
102540648 ATATATATTA
* * * * *
102540658 AAAATTCAAATATTACATTAGATATTTTC
1 AAAATGCAAATATGACACTAAACATTTTC
102540687 AAAATGCAAATATGACACTAAACATTTT
1 AAAATGCAAATATGACACTAAACATTTT
102540715 ATAAAAGTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.35
Consensus pattern (29 bp):
AAAATGCAAATATGACACTAAACATTTTC
Found at i:102540860 original size:22 final size:23
Alignment explanation
Indices: 102540832--102540886 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
102540822 CATTACATTC
*
102540832 ACGTAATATAAAATAT-ATATAT
1 ACGTAATATAAAATATAAAATAT
*
102540854 ACGTAATATAAAATTTAAAATAT
1 ACGTAATATAAAATATAAAATAT
*
102540877 ACCTAATATA
1 ACGTAATATA
102540887 TTAAAAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
ACGTAATATAAAATATAAAATAT
Found at i:102540927 original size:23 final size:25
Alignment explanation
Indices: 102540884--102540929 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102540874 TATACCTAAT
102540884 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
102540909 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
102540930 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:102541504 original size:30 final size:30
Alignment explanation
Indices: 102541411--102541510 Score: 139
Period size: 30 Copynumber: 3.3 Consensus size: 30
102541401 TAGGTACAAG
*
102541411 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* ** *
102541441 AGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
102541471 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGTGGAGT
102541501 TGGTGGTGGA
1 TGGTGGTGGA
102541511 AAAGGAGTGG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
29 2 0.03
30 58 0.97
ACGTcount: A:0.19, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:102541521 original size:30 final size:30
Alignment explanation
Indices: 102541457--102541525 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
102541447 TGGAGCAAGT
* * *
102541457 GTGGCTAGTGGATTTGGTGGTGGAGAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
102541487 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
102541517 GTGGCTAGT
1 GTGGCTAGT
102541526 TGAGAAAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:102541521 original size:60 final size:60
Alignment explanation
Indices: 102541411--102541525 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
102541401 TAGGTACAAG
* * *
102541411 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGAGTGGCTAGTGGATT
* **
102541471 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGTTGGTGGTGGA-AAAGGAGTGGCTAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGTGGAGTAGGTAATGGAGAAA-GAGTGGCTAGT
102541526 TGAGAAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 4 0.09
60 43 0.91
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (60 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGAGTGGCTAGTGGATT
Found at i:102545963 original size:30 final size:30
Alignment explanation
Indices: 102545929--102545999 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
102545919 AATGGGGCAA
* *
102545929 GTGTGGCTAGTGGATTTGGTGGTGGAGAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
102545959 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
102545989 GAGTGGCTAGT
1 GTGTGGCTAGT
102546000 TGAGAAAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.18, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:102547176 original size:27 final size:29
Alignment explanation
Indices: 102547145--102547199 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 29
102547135 TACAATAAAA
102547145 ATATTAAAAATTAAAA-AAAT-TAAAATC
1 ATATTAAAAATTAAAATAAATATAAAATC
* * *
102547172 ATATTTATATTTAAAATAAATATAAAAT
1 ATATTAAAAATTAAAATAAATATAAAAT
102547200 AAAACAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 13 0.57
28 4 0.17
29 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (29 bp):
ATATTAAAAATTAAAATAAATATAAAATC
Found at i:102547830 original size:15 final size:15
Alignment explanation
Indices: 102547797--102547830 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
102547787 TCCCCAAACT
* *
102547797 TTTTTTATAATTTAT
1 TTTTTTATAATTAAA
102547812 TTTTTTATAATTAAA
1 TTTTTTATAATTAAA
102547827 TTTT
1 TTTT
102547831 ATATTATTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTTATAATTAAA
Found at i:102548470 original size:22 final size:22
Alignment explanation
Indices: 102548442--102548487 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
102548432 ATTATAGAGT
*
102548442 AAAAATATTAAAAGGACTAAAG
1 AAAAATAATAAAAGGACTAAAG
102548464 AAAAATAATAAAAGGACTAAAG
1 AAAAATAATAAAAGGACTAAAG
102548486 AA
1 AA
102548488 GCAATTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.15
Consensus pattern (22 bp):
AAAAATAATAAAAGGACTAAAG
Found at i:102548560 original size:17 final size:17
Alignment explanation
Indices: 102548535--102548579 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
102548525 TAATTACACG
* *
102548535 TGTAAATATTACAGATA
1 TGTATATATTACACATA
102548552 TGTATATATTACACATA
1 TGTATATATTACACATA
102548569 TGTATATATTA
1 TGTATATATTA
102548580 ATAAAATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (17 bp):
TGTATATATTACACATA
Found at i:102550502 original size:6 final size:6
Alignment explanation
Indices: 102550491--102550528 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
102550481 GGAATACACC
*
102550491 GTAACA GTAACA GTAACA GTAGCA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GT
102550529 CAGGTACAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:102551766 original size:17 final size:17
Alignment explanation
Indices: 102551741--102551774 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
102551731 CACACTTGTC
* *
102551741 TTTATTTAATTATTTAT
1 TTTAATTAATTAATTAT
102551758 TTTAATTAATTAATTAT
1 TTTAATTAATTAATTAT
102551775 AAAATATATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATTAATTAATTAT
Found at i:102553685 original size:16 final size:17
Alignment explanation
Indices: 102553660--102553691 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
102553650 TTTGACATAT
102553660 AAAAATTATATAAAAAG
1 AAAAATTATATAAAAAG
102553677 AAAAA-TATATAAAAA
1 AAAAATTATATAAAAA
102553692 TAGTTGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AAAAATTATATAAAAAG
Found at i:102556261 original size:20 final size:22
Alignment explanation
Indices: 102556222--102556262 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
102556212 CATCTCCGAC
*
102556222 GGAAACAGAATATGTTTTGGAA
1 GGAAACAGAATATGTCTTGGAA
102556244 GGAAACAG-A-ATGTCTTGGA
1 GGAAACAGAATATGTCTTGGA
102556263 TTCTTTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.39, C:0.07, G:0.29, T:0.24
Consensus pattern (22 bp):
GGAAACAGAATATGTCTTGGAA
Found at i:102556660 original size:18 final size:18
Alignment explanation
Indices: 102556623--102556660 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
102556613 TATTTCAAAT
*
102556623 TTCTCTCAAATTTTTTTC
1 TTCTCTCAAATTTTTATC
102556641 TTCTCTC-AATTTTCTATC
1 TTCTCTCAAATTTT-TATC
102556659 TT
1 TT
102556661 AACCTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCTCTCAAATTTTTATC
Found at i:102558730 original size:219 final size:219
Alignment explanation
Indices: 102558351--102558756 Score: 686
Period size: 219 Copynumber: 1.9 Consensus size: 219
102558341 ATCGTCTTCA
*
102558351 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCTCATTGTGGACT
1 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
* * *
102558416 TCCCCTTCGTCCAGTTCCATGCCTATCATTTTTCTTCTGTATGTCGGCTGTGAGTTTGGACACTC
66 TCCCCTTCGTCCAGTTCCATGCCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTTGGACACTC
102558481 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGACCCTGTTACAGCAGCAGCCATCGTCTTCA
131 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGACCCTGTTACAGCAGCAGCCATCGTCTTCA
102558546 TCGACTTAAACGTTCGACGGCTGG
196 TCGACTTAAACGTTCGACGGCTGG
* *
102558570 TCGCTGTTCTATTTCGAAACCTAGTCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
1 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
* * * * *
102558635 TTCCCTTTGTCCAGTTCCATGTCTATCCTTTTGCTTCTGTATGTCCGCCGTGAGTTTGGCCACTC
66 TCCCCTTCGTCCAGTTCCATGCCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTTGGACACTC
** *
102558700 ATTGACTCTGGGTTTTGCCTTTTCTCCATTTTCAGACCCTGTTGCAGCAGCAGCCAT
131 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGACCCTGTTACAGCAGCAGCCAT
102558757 TGGTTGAACC
Statistics
Matches: 173, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
219 173 1.00
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (219 bp):
TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
TCCCCTTCGTCCAGTTCCATGCCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTTGGACACTC
ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGACCCTGTTACAGCAGCAGCCATCGTCTTCA
TCGACTTAAACGTTCGACGGCTGG
Found at i:102560140 original size:55 final size:54
Alignment explanation
Indices: 102560070--102560188 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
102560060 ATTTGGATTG
* * *
102560070 AATCGATTATTATGTTGAAATATTATTTATTCTAAATAAATTATTTTTATATTTA
1 AATCGATTATCATGTTGAAATACTATTT-TTCTAAATAAATTATTTATATATTTA
* * * ** * *
102560125 AATCGATTGTCATGTTGAAATACTGTTTTTTTTGATAAATTGTTTATATGTTTA
1 AATCGATTATCATGTTGAAATACTATTTTTCTAAATAAATTATTTATATATTTA
102560179 AATCGATTAT
1 AATCGATTAT
102560189 TACGGCGGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
54 29 0.55
55 24 0.45
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (54 bp):
AATCGATTATCATGTTGAAATACTATTTTTCTAAATAAATTATTTATATATTTA
Found at i:102560272 original size:55 final size:53
Alignment explanation
Indices: 102560121--102560300 Score: 171
Period size: 55 Copynumber: 3.3 Consensus size: 53
102560111 TATTTTTATA
* * * **
102560121 TTTAAATCGATTGTCATGTTGAAATACTGTTTTTTTTGATAAATTGTTTATATG
1 TTTAAATCGATTGTTATGTTGGAATACTGTTTTTTTTAATTGATTG-TTATATG
* * ** * * ** *
102560175 TTTAAATCGATTATTACGGCGGAACATTGCTTCCTTTGAATTGATTGTGTATATG
1 TTTAAATCGATTGTTATGTTGGAATACTG-TTTTTTTTAATTGATTGT-TATATG
* *
102560230 TTTAAATGGATTGTTATGTTGGAATACTGTTTATTTTTAATTGATTACTTATATG
1 TTTAAATCGATTGTTATGTTGGAATACTGTTT-TTTTTAATTGATT-GTTATATG
102560285 TTTAAATCGATTGTTA
1 TTTAAATCGATTGTTA
102560301 CGTAGCACGT
Statistics
Matches: 96, Mismatches: 26, Indels: 7
0.74 0.20 0.05
Matches are distributed among these distances:
54 24 0.25
55 71 0.74
56 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (53 bp):
TTTAAATCGATTGTTATGTTGGAATACTGTTTTTTTTAATTGATTGTTATATG
Found at i:102562960 original size:37 final size:37
Alignment explanation
Indices: 102562910--102562989 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
102562900 TTATTTAATG
102562910 CAATGAGACACTAACCTTACTTGTTGAAGATGCTCTC
1 CAATGAGACACTAACCTTACTTGTTGAAGATGCTCTC
* *
102562947 CAATGAGACACTAACTTTATTTGTTGAAGATGCTCTC
1 CAATGAGACACTAACCTTACTTGTTGAAGATGCTCTC
102562984 CAATGA
1 CAATGA
102562990 AATTCTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (37 bp):
CAATGAGACACTAACCTTACTTGTTGAAGATGCTCTC
Found at i:102563435 original size:18 final size:19
Alignment explanation
Indices: 102563402--102563438 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
102563392 AATAATTTTT
*
102563402 AAAATTTTAAATATTTATA
1 AAAATTCTAAATATTTATA
102563421 AAAATTCTAAA-ATTTATA
1 AAAATTCTAAATATTTATA
102563439 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTCTAAATATTTATA
Found at i:102563443 original size:25 final size:27
Alignment explanation
Indices: 102563401--102563462 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 27
102563391 AAATAATTTT
* *
102563401 TAAAATTTTAAATATTTATAAAAATTC
1 TAAAATTTTAAATATTTAAAAAAATTA
*
102563428 TAAAA-TTTATAT-TTTAAAAAAATTA
1 TAAAATTTTAAATATTTAAAAAAATTA
102563453 TAAAAATTTT
1 T-AAAATTTT
102563463 TTAAAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 12 0.40
26 10 0.33
27 8 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TAAAATTTTAAATATTTAAAAAAATTA
Found at i:102563617 original size:16 final size:16
Alignment explanation
Indices: 102563596--102563626 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102563586 CTTTGAAAAT
102563596 TTTCAAATATATGTGG
1 TTTCAAATATATGTGG
*
102563612 TTTCAAATTTATGTG
1 TTTCAAATATATGTG
102563627 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATGTGG
Found at i:102568372 original size:46 final size:48
Alignment explanation
Indices: 102568268--102568387 Score: 138
Period size: 48 Copynumber: 2.5 Consensus size: 48
102568258 TGTCTTCGAC
** * *
102568268 ATGGACTTACATGAATTATTCCTGTCTCCAATATCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATACCATATATATATAAT
* * *
102568316 ATGGGCTTACATGGCTCATTCCTGTCTCCAA-AGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATA-CCATATATATATAAT
*
102568362 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
102568388 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 27 0.44
47 2 0.03
48 33 0.53
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAATACCATATATATATAAT
Found at i:102569909 original size:19 final size:19
Alignment explanation
Indices: 102569838--102569910 Score: 53
Period size: 19 Copynumber: 3.7 Consensus size: 19
102569828 TCATATCTAG
102569838 TATTATTTTCGTA-TATCATT
1 TATTATTTT--TATTATCATT
*
102569858 T-TTATTTATTATTATACCTAT
1 TATTATTT-TTATTAT-CAT-T
*
102569879 TATT-TTCATTATTATCATT
1 TATTATT-TTTATTATCATT
102569898 TATTATTTTTATT
1 TATTATTTTTATT
102569911 TTAATATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
18 2 0.05
19 19 0.45
20 8 0.19
21 11 0.26
22 2 0.05
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.64
Consensus pattern (19 bp):
TATTATTTTTATTATCATT
Found at i:102571324 original size:68 final size:63
Alignment explanation
Indices: 102571177--102571324 Score: 165
Period size: 63 Copynumber: 2.3 Consensus size: 63
102571167 CATAATTTTG
* * *
102571177 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACTTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
* * *
102571240 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACACATAGTACCACCCATGCGACCTAGC--CAGT--T--TATC
102571303 TCGTA
59 TCGTA
102571308 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
102571325 ATGTGCACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
62 1 0.01
63 42 0.59
64 1 0.01
65 2 0.03
66 1 0.01
68 23 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.32
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
Found at i:102571861 original size:30 final size:30
Alignment explanation
Indices: 102571827--102571887 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
102571817 TCCTTAACTC
102571827 AAAC-TTTGTCAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
102571857 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
102571887 A
1 A
102571888 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:102573592 original size:4 final size:4
Alignment explanation
Indices: 102573583--102573616 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
102573573 GGATTAGAAT
102573583 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
102573617 GTATAGACGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:102573941 original size:25 final size:26
Alignment explanation
Indices: 102573911--102573971 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
102573901 TATTACTTAT
102573911 TTTATTATTGAAAATATT-TATTT-TA
1 TTTATTATTGAAAAT-TTATATTTGTA
*
102573936 TTTATTGGATTGCAAATTTATATTTGTA
1 TTTATT--ATTGAAAATTTATATTTGTA
102573964 TTTATTAT
1 TTTATTAT
102573972 AGATGTAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 6 0.19
26 4 0.13
27 13 0.42
28 8 0.26
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (26 bp):
TTTATTATTGAAAATTTATATTTGTA
Found at i:102573952 original size:27 final size:28
Alignment explanation
Indices: 102573917--102573969 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
102573907 TTATTTTATT
102573917 ATTGAAAATATT-TATTT-TATTTATTGG
1 ATTGAAAAT-TTATATTTGTATTTATTGG
*
102573944 ATTGCAAATTTATATTTGTATTTATT
1 ATTGAAAATTTATATTTGTATTTATT
102573970 ATAGATGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 2 0.09
27 13 0.57
28 8 0.35
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (28 bp):
ATTGAAAATTTATATTTGTATTTATTGG
Found at i:102578442 original size:38 final size:38
Alignment explanation
Indices: 102578391--102578468 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
102578381 GAGCATCTGT
*
102578391 TTGATATTTATATATGCTAAGAGAACACCATAAAGTTC
1 TTGATATTTATATATGCTAAGAGAACAACATAAAGTTC
102578429 TTGATATTTATATATGCTAAGAGAACAACATAAAGTTC
1 TTGATATTTATATATGCTAAGAGAACAACATAAAGTTC
102578467 TT
1 TT
102578469 ATGCTTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (38 bp):
TTGATATTTATATATGCTAAGAGAACAACATAAAGTTC
Found at i:102588141 original size:67 final size:67
Alignment explanation
Indices: 102588058--102588186 Score: 231
Period size: 67 Copynumber: 1.9 Consensus size: 67
102588048 GAGAAGTAAT
**
102588058 GTGCAATACAAATCATCAATTTCCTTTGAATATTTGAATAAGGCTTTAATACTAAAAGCTCACTA
1 GTGCAATACAAATCATCAATTTCCTTCAAATATTTGAATAAGGCTTTAATACTAAAAGCTCACTA
102588123 AC
66 AC
*
102588125 GTGCAATACAAATCATCAATTTCCTTCAAATATTTGAATTAGGCTTTAATACTAAAAGCTCA
1 GTGCAATACAAATCATCAATTTCCTTCAAATATTTGAATAAGGCTTTAATACTAAAAGCTCA
102588187 ATGTAAAGTA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (67 bp):
GTGCAATACAAATCATCAATTTCCTTCAAATATTTGAATAAGGCTTTAATACTAAAAGCTCACTA
AC
Found at i:102592364 original size:30 final size:32
Alignment explanation
Indices: 102592304--102592367 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
102592294 CACTTATTTT
102592304 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
102592337 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
102592368 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:102592629 original size:41 final size:41
Alignment explanation
Indices: 102592584--102592739 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
102592574 ACCGGCTCTT
*
102592584 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
102592625 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
102592666 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
102592707 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
102592740 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:102599504 original size:30 final size:32
Alignment explanation
Indices: 102599444--102599507 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
102599434 CACTTATTTT
102599444 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
102599477 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
102599508 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:102599769 original size:41 final size:41
Alignment explanation
Indices: 102599724--102599879 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
102599714 ACCGGCTCTT
*
102599724 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
102599765 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
102599806 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
102599847 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
102599880 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:102600942 original size:13 final size:13
Alignment explanation
Indices: 102600924--102600948 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102600914 CCATCGAATG
102600924 CACACAAAATAAA
1 CACACAAAATAAA
102600937 CACACAAAATAA
1 CACACAAAATAA
102600949 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:102609171 original size:24 final size:24
Alignment explanation
Indices: 102609125--102609175 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
102609115 ACATGTTTAT
102609125 TTTTAAAATTTATTAAACAATATGA
1 TTTTAAAATTTATTAAACAATAT-A
*
102609150 TTTTATAATTT-TTAAA-ATATATA
1 TTTTAAAATTTATTAAACA-ATATA
102609173 TTT
1 TTT
102609176 GCTAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.21
24 9 0.38
25 10 0.42
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
TTTTAAAATTTATTAAACAATATA
Found at i:102609629 original size:23 final size:23
Alignment explanation
Indices: 102609593--102609661 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 23
102609583 TAAAAGCATT
*
102609593 TTAAATATTCATATAAATATTTTA
1 TTAAA-ATTAATATAAATATTTTA
102609617 TTAAAATTAATATTAAAT-TTTTA
1 TTAAAATTAATA-TAAATATTTTA
*
102609640 TTATAAA-TATATATAAACATTT
1 TTA-AAATTA-ATATAAATATTT
102609662 ATAAAACATA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 20 0.51
24 19 0.49
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAAAATTAATATAAATATTTTA
Found at i:102614035 original size:295 final size:298
Alignment explanation
Indices: 102613463--102614057 Score: 1029
Period size: 295 Copynumber: 2.0 Consensus size: 298
102613453 TGAGTGTTCA
* *
102613463 ATCGAATTGAGTGAAAAAAAATTTCGAGTTAATCAAGTTCACGAGTCCTATTTTATCATCCTAAC
1 ATCGAATCGAGTGAAAAAAAATTTCGAGTTAATCAAGTTCACGAGTCATATTTTATCATCCTAAC
*
102613528 TTAATTTGATTTTTTTTTTGAATCAAGTCGAGTGAAATAAAATTTAAGTTGAGTCGAGTCGAATC
66 TCAATTTGA-TTTTTTTTTGAATCAAGTCGAGTGAAATAAAATTTAAGTTGAGTCGAGTCGAATC
102613593 GAGTAAAATTTTTTGAGTTACATTAAAAAAATTAAACATGTCAAATAAAATTATTGTTACAATAT
130 GAGTAAAATTTTTTGAGTTACATTAAAAAAATTAAACATGTCAAATAAAATTATTGTTACAATAT
102613658 AACTAATTCAATGTTAGAGCACATAAATTTGAAACCATATATATTTGAAAAAAACTTCAAAGCAA
195 AACTAATTCAATGTTAGAGCACATAAATTTGAAACCATATATATTTGAAAAAAACTTCAAAGCAA
102613723 AATAATAAAAAATTAAGATACTTGAACATAATAAATTTG
260 AATAATAAAAAATTAAGATACTTGAACATAATAAATTTG
102613762 ATCGAATCGAGTG-AAAAAAATTTCGAGTTAATCAAGTTCACGAGTCATATTTTATCATCCTAAC
1 ATCGAATCGAGTGAAAAAAAATTTCGAGTTAATCAAGTTCACGAGTCATATTTTATCATCCTAAC
* *
102613826 TCAATTTGA-TTTTTTTT-AATCAAGTCGAGTGAAATGAAATTTGAGTTGAGTCGAGTCGAATCG
66 TCAATTTGATTTTTTTTTGAATCAAGTCGAGTGAAATAAAATTTAAGTTGAGTCGAGTCGAATCG
* *
102613889 AGTGAAATTATTTT-AGTTACA-TAAAAAAATTAAACATGTCAACTAAAATTATTGTTACAATAT
131 AGTAAAATT-TTTTGAGTTACATTAAAAAAATTAAACATGTCAAATAAAATTATTGTTACAATAT
** *
102613952 AACTAATTCCGTGTTAGAGCACATAAATTTGAAACTATATATATTTGAAAAAAAACTTCAAAGCA
195 AACTAATTCAATGTTAGAGCACATAAATTTGAAACCATATATATTTG-AAAAAAACTTCAAAGCA
*
102614017 AAATAATAAAAAATTAAGATACTTGAGCATAATAAATTTG
259 AAATAATAAAAAATTAAGATACTTGAACATAATAAATTTG
102614057 A
1 A
102614058 ATCATTAATT
Statistics
Matches: 283, Mismatches: 11, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
294 85 0.30
295 116 0.41
296 12 0.04
298 58 0.20
299 12 0.04
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.34
Consensus pattern (298 bp):
ATCGAATCGAGTGAAAAAAAATTTCGAGTTAATCAAGTTCACGAGTCATATTTTATCATCCTAAC
TCAATTTGATTTTTTTTTGAATCAAGTCGAGTGAAATAAAATTTAAGTTGAGTCGAGTCGAATCG
AGTAAAATTTTTTGAGTTACATTAAAAAAATTAAACATGTCAAATAAAATTATTGTTACAATATA
ACTAATTCAATGTTAGAGCACATAAATTTGAAACCATATATATTTGAAAAAAACTTCAAAGCAAA
ATAATAAAAAATTAAGATACTTGAACATAATAAATTTG
Found at i:102621891 original size:47 final size:45
Alignment explanation
Indices: 102621840--102622007 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
102621830 TATTTAATAT
*
102621840 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
102621887 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
102621931 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
102621978 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
102622008 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:102621913 original size:91 final size:91
Alignment explanation
Indices: 102621766--102621973 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
102621756 TTGATTTTAG
* *
102621766 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
102621831 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
102621858 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
102621923 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
102621949 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
102621974 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:102621934 original size:44 final size:43
Alignment explanation
Indices: 102621787--102621948 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
102621777 AAGAACATTT
* * *
102621787 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
102621830 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
102621875 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
102621921 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
102621949 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:102621948 original size:26 final size:28
Alignment explanation
Indices: 102621786--102621862 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
102621776 TAAGAACATT
* *
102621786 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
102621816 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
102621843 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
102621863 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:102622155 original size:25 final size:26
Alignment explanation
Indices: 102622123--102622177 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
102622113 TTATTAAATT
*
102622123 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
102622148 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
102622173 A-ATAT
1 ATATAT
102622178 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:102622399 original size:45 final size:44
Alignment explanation
Indices: 102622318--102622408 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
102622308 ATCTCTATTC
*
102622318 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
102622362 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
102622407 CA
1 CA
102622409 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:102622408 original size:16 final size:16
Alignment explanation
Indices: 102622389--102622440 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
102622379 GATTTGCTAT
* *
102622389 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
102622405 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102622421 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102622437 TACA
1 TACA
102622441 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102625388 original size:46 final size:46
Alignment explanation
Indices: 102625338--102625513 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
102625328 TGGTTGAGCA
102625338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102625384 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
102625429 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102625477 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102625514 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:102625494 original size:93 final size:93
Alignment explanation
Indices: 102625335--102625506 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
102625325 GGATGGTTGA
* *
102625335 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102625400 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
102625428 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102625493 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
102625507 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:102628070 original size:40 final size:40
Alignment explanation
Indices: 102628014--102628148 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 40
102628004 ACCAGTTTAG
102628014 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
* * * ** *
102628054 CACCCAGTGTCGCATCGGCTAAACCGAAGT-A-AA-TTGG
1 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
* * *
102628091 CACCTAGTGCCTCATCGAAT-ATATCTAAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGGATAAT-TC-GAAGTAATAATTTGA
* *
102628132 CACCCAATGTCTCATCG
1 CACCCAGTGCCTCATCG
102628149 ACTTGAAGTC
Statistics
Matches: 72, Mismatches: 18, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
36 1 0.01
37 19 0.26
38 6 0.08
39 2 0.03
40 27 0.38
41 17 0.24
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
Found at i:102628314 original size:17 final size:15
Alignment explanation
Indices: 102628281--102628330 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
102628271 ATTCAAATAA
*
102628281 TCAATATATATATAT
1 TCAATATATATAAAT
102628296 TCAATATATATACCAAT
1 TCAATATATATA--AAT
102628313 TCAATCA-ATATAAAT
1 TCAAT-ATATATAAAT
102628328 TCA
1 TCA
102628331 TCACATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 18 0.58
17 12 0.39
18 1 0.03
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (15 bp):
TCAATATATATAAAT
Found at i:102629087 original size:5 final size:5
Alignment explanation
Indices: 102629077--102629109 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
102629067 TTGTTTTATT
102629077 ATATA ATATA ATATA ATAT- ATATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
102629110 CATACTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:102637764 original size:18 final size:18
Alignment explanation
Indices: 102637727--102637779 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
102637717 TTACAAAAAT
*
102637727 AATTTAAAATAATTTTTAA
1 AATTTAAAAT-ATTTATAA
102637746 AATTTAAAATATTTATAA
1 AATTTAAAATATTTATAA
* *
102637764 AAATT-CAATATTTATA
1 AATTTAAAATATTTATA
102637780 TTTATAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 10 0.32
18 11 0.35
19 10 0.32
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTAAAATATTTATAA
Found at i:102639113 original size:13 final size:13
Alignment explanation
Indices: 102639095--102639124 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
102639085 CACTGGACTT
*
102639095 TTATATTTCGTAA
1 TTATATTTAGTAA
102639108 TTATATTTAGTAA
1 TTATATTTAGTAA
102639121 TTAT
1 TTAT
102639125 GTTATTATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (13 bp):
TTATATTTAGTAA
Found at i:102646931 original size:177 final size:176
Alignment explanation
Indices: 102646571--102647239 Score: 792
Period size: 177 Copynumber: 3.8 Consensus size: 176
102646561 TCTGCTCCAC
* * **
102646571 TGCTACCTCAGAGAGATAAGG-TCAGTTGCTAAAATCTGCTCTTTAGCCGATACATGGAGATAAG
1 TGCTACCTCAGAGAGATAAGGCT-GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
* * *
102646635 ACTCACCAT-TTCTGATCTGCTCCATAG-C----C---G-GATAAGATCTGTAATTTGCAGCCTA
65 ACTCGCCATCTT-TGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGCCTG
* * *
102646690 CTTCTTGCGACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT
129 CTTCCTACAACTTCAGG-AGATAAGACTTGTATCTTCAACCTGCTCTCT
*
102646739 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCCCCATAGCCGATACATGGAGATAAGA
1 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * * *
102646804 CTCGCCAT-TTCTGATCTACTCCATAGCCGGTATATGGAGATAAGATCTGTAATTTCCAGTCTGC
66 CTCGCCATCTT-TGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGCCTGC
* *
102646868 TTCCTACAACTTCAGGCAGATGAGACTTGTATTTTCAACCTGCTCTCT
130 TTCCTACAACTTCAGG-AGATAAGACTTGTATCTTCAACCTGCTCTCT
* * * *
102646916 TGCTATCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGA
1 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
** * **
102646981 CTCGCCATCTTTGATCTACTCCATAGTAGATACATGGAGATAAGATCTGAAATTTTTTAGCCTG-
66 CTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTGCAGCCTGC
** * *
102647045 TTACCTTACTGCTT-AGGAGGTTAATG-CTTGTATCTTCAACCTGTTCTCT
130 TT-CC-TACAACTTCAGGA-GATAA-GACTTGTATCTTCAACCTGCTCTCT
* * * * *
102647094 TGCTACCTCAGAGAGATAAAGCCGGTGGCTTAAATTTGCTCCATAGCCGATACATGAAGATAAGA
1 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* *
102647159 CTCTCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGTCTGCT
66 CTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGCCTGCT
* *
102647224 CCCTGCAACTTCAGGA
131 TCCTACAACTTCAGGA
102647240 AAGTAAGATT
Statistics
Matches: 427, Mismatches: 56, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
168 82 0.19
169 2 0.00
176 6 0.01
177 186 0.44
178 144 0.34
179 7 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (176 bp):
TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
CTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGCCTGCT
TCCTACAACTTCAGGAGATAAGACTTGTATCTTCAACCTGCTCTCT
Found at i:102647356 original size:133 final size:133
Alignment explanation
Indices: 102647118--102647604 Score: 755
Period size: 133 Copynumber: 3.7 Consensus size: 133
102647108 GATAAAGCCG
* * * *
102647118 GTGGCTTAAATTTGCTCCATAGCCGATACATGAAGATAAGACTCT-CCATCTT-TGATCTACTCC
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT-TGCCAT-TTCTGATCTGCTCC
*
102647181 ATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAAGTAA
64 ATAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAAGTAA
102647246 GATTA
129 GATTA
* *
102647251 GTGGCTAAAATCTGCTTCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTTCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCAT
** *
102647316 AGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCTTTGCAACTTCAGGAAAATAAGA
66 AGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAAGTAAGA
*
102647381 CTA
131 TTA
* *
102647384 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCAT
*
102647449 AGCTGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGG-AAGATAAG
66 AGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAAG-TAAG
102647513 ATTA
130 ATTA
* * * * *
102647517 GAGGATAAAATATGCTCCATAGCCGATACATGGAGATAAGACTTGTCATTTCTAATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCAT
102647582 AGCCGATACATGGAGATAAGATC
66 AGCCGATACATGGAGATAAGATC
102647605 CGTAACTTTT
Statistics
Matches: 323, Mismatches: 28, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
132 5 0.02
133 318 0.98
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (133 bp):
GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCAT
AGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAAGTAAGA
TTA
Found at i:102647490 original size:45 final size:44
Alignment explanation
Indices: 102647130--102647604 Score: 200
Period size: 45 Copynumber: 10.7 Consensus size: 44
102647120 GGCTTAAATT
* *
102647130 TGCTCCATAGCCGATACATGAAGATAAGACTCTCCATCTTTG--ATC
1 TGCTCCATAGCCGATACATGGAGATAAGA-TCT--ATATTTGCAATC
* * *
102647175 TACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGTC
1 TGCTCCATAGCCGATACATGGAGATAAGATCTAT-ATTTGCAATC
* * * * *** **
102647220 TGCTCCCT-G-CAACTTCA-GGAAAGTAAGAT-TAGTGGCTAAAATC
1 TGCTCCATAGCCGA-TACATGGAGA-TAAGATCTA-TATTTGCAATC
* *
102647263 TGCTTCATAGCCGATACATGGAGATAAGA-CT-TGCCATTT-CTGATC
1 TGCTCCATAGCCGATACATGGAGATAAGATCTAT---ATTTGC-AATC
* *
102647308 TGCTTCATAGCCGATACATGGAGATAAGATCTATAATTTGCAGTC
1 TGCTCCATAGCCGATACATGGAGATAAGATCTAT-ATTTGCAATC
* * * * * *** **
102647353 TGCT-CTTTG-CAACTTCA-GGAAAATAAGA-CTAGTGGCTAAAATC
1 TGCTCCATAGCCGA-TACATGG-AGATAAGATCTA-TATTTGCAATC
* *
102647396 TGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG--ATC
1 TGCTCCATAGCCGATACATGGAGATAAGA-T--CTATATTTGCAATC
* *
102647441 TGCTCCATAGCTGATACATGGAGATAAGATCTATAATTTGCAGTC
1 TGCTCCATAGCCGATACATGGAGATAAGATCTAT-ATTTGCAATC
* * * * ** ** *
102647486 TGCTCCCT-G-CAACTTCA-GGAAGATAAGAT-TAGAGGATAAAATA
1 TGCTCCATAGCCGA-TACATGG-AGATAAGATCTATA-TTTGCAATC
*
102647529 TGCTCCATAGCCGATACATGGAGATAAGA-CTTGTCATTT-CTAATC
1 TGCTCCATAGCCGATACATGGAGATAAGATC-TAT-ATTTGC-AATC
102647574 TGCTCCATAGCCGATACATGGAGATAAGATC
1 TGCTCCATAGCCGATACATGGAGATAAGATC
102647605 CGTAACTTTT
Statistics
Matches: 314, Mismatches: 75, Indels: 81
0.67 0.16 0.17
Matches are distributed among these distances:
42 6 0.02
43 55 0.18
44 77 0.25
45 166 0.53
46 5 0.02
47 3 0.01
48 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
TGCTCCATAGCCGATACATGGAGATAAGATCTATATTTGCAATC
Found at i:102647820 original size:63 final size:64
Alignment explanation
Indices: 102647717--102647842 Score: 191
Period size: 63 Copynumber: 2.0 Consensus size: 64
102647707 TCATGTATAT
* * * *
102647717 ATGCTTATGCCAAATAGTTAGGATGCTATGATCGACATGAATCAAACGCTCCTAGCTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAACGCTCCTAACTAGATGTG
* *
102647781 ATGCTTATGCCAAA-AATTAGGATGCTATGATCAAAATGAATCAGATGCTCCTAACTAGATGT
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAACGCTCCTAACTAGATGT
102647843 ACTATGAATG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
63 42 0.75
64 14 0.25
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAACGCTCCTAACTAGATGTG
Found at i:102662912 original size:50 final size:50
Alignment explanation
Indices: 102662788--102663036 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
102662778 GATAATAACA
* * ** * *
102662788 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
102662839 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
102662889 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
102662939 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
102662994 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
102663037 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:102662966 original size:100 final size:104
Alignment explanation
Indices: 102662787--102663036 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
102662777 TGATAATAAC
**
102662787 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
102662852 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
102662889 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
102662952 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
102662994 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
102663037 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:102663152 original size:13 final size:13
Alignment explanation
Indices: 102663131--102663162 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
102663121 GCTTGGATCA
*
102663131 TCATCAAATAAAT
1 TCATAAAATAAAT
102663144 TCATAAAATAAAT
1 TCATAAAATAAAT
102663157 TCATAA
1 TCATAA
102663163 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:102663408 original size:30 final size:30
Alignment explanation
Indices: 102663373--102663430 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
102663363 CCTCGACTCT
*
102663373 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
102663403 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
102663431 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:102668579 original size:23 final size:23
Alignment explanation
Indices: 102668550--102668597 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
102668540 GAAATGATGT
*
102668550 TTTTACTGTGTATTTGTCATTAG
1 TTTTACTGTGTATTTGTCAGTAG
102668573 TTTTACTGTGTATTTGTCAGTAG
1 TTTTACTGTGTATTTGTCAGTAG
102668596 TT
1 TT
102668598 ACTCCGACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.08, G:0.19, T:0.56
Consensus pattern (23 bp):
TTTTACTGTGTATTTGTCAGTAG
Found at i:102670863 original size:32 final size:32
Alignment explanation
Indices: 102670822--102670887 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
102670812 AACTAGAAGT
102670822 TAGCTTGCTCATGCATCTTTAGGCGCAGTATA
1 TAGCTTGCTCATGCATCTTTAGGCGCAGTATA
102670854 TAGCTTGCTCATGCATCTTTAGGCGCAGTATA
1 TAGCTTGCTCATGCATCTTTAGGCGCAGTATA
102670886 TA
1 TA
102670888 CAATGTAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (32 bp):
TAGCTTGCTCATGCATCTTTAGGCGCAGTATA
Found at i:102674028 original size:20 final size:20
Alignment explanation
Indices: 102673991--102674030 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102673981 TTGTAATAGT
*
102673991 AATTACTTAAAGATAAAAAA
1 AATTACTTAAAGAAAAAAAA
102674011 AATT-CTTAAAGACAAAAAAA
1 AATTACTTAAAGA-AAAAAAA
102674031 TTTTCATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (20 bp):
AATTACTTAAAGAAAAAAAA
Found at i:102674032 original size:18 final size:20
Alignment explanation
Indices: 102673991--102674030 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
102673981 TTGTAATAGT
102673991 AATTACTTAAAGATAAAAAA
1 AATTACTTAAAGATAAAAAA
*
102674011 AATT-CTTAAAGACAAAAAA
1 AATTACTTAAAGATAAAAAA
102674030 A
1 A
102674031 TTTTCATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (20 bp):
AATTACTTAAAGATAAAAAA
Found at i:102679042 original size:46 final size:46
Alignment explanation
Indices: 102678972--102679152 Score: 220
Period size: 46 Copynumber: 3.9 Consensus size: 46
102678962 TTTGACATGA
* * * * * *
102678972 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGT
* * ***
102679018 TGCCATGGTAGCTTTCAACCATGGTTTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* * *
102679064 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATAAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
102679110 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
102679153 GAGAGCACAC
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 4 0.03
46 111 0.97
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:102679129 original size:92 final size:92
Alignment explanation
Indices: 102678972--102679152 Score: 247
Period size: 92 Copynumber: 2.0 Consensus size: 92
102678962 TTTGACATGA
* * * * *
102678972 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTAGCTTTCAAC
1 TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTCTATAAGGTTGCCATGGTAGCTTTCAAC
* ***
102679037 CATGGTTTTGTTCATTTCATATCACGT
66 CATGGTCTTACACATTTCATATCACGT
* *
102679064 TGCCATGGTATCTTTCAACTATGGTCTTACACA-TTTCATATAAGGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTC-TATAAGGTTGCCATGGTAGCTTTCAA
102679128 CCATGGTCTTACACATTTCATATCA
65 CCATGGTCTTACACATTTCATATCA
102679153 GAGAGCACAC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 4 0.05
92 73 0.95
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTCTATAAGGTTGCCATGGTAGCTTTCAAC
CATGGTCTTACACATTTCATATCACGT
Found at i:102686492 original size:11 final size:11
Alignment explanation
Indices: 102686476--102686518 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
102686466 TAGAATATAT
102686476 CCCATACCTTG
1 CCCATACCTTG
*
102686487 CCCATACCTTT
1 CCCATACCTTG
*
102686498 CCCATACC-TA
1 CCCATACCTTG
102686508 CCCATACCTTG
1 CCCATACCTTG
102686519 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:102686503 original size:22 final size:21
Alignment explanation
Indices: 102686475--102686517 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
102686465 TTAGAATATA
*
102686475 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
102686497 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
102686518 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:102687096 original size:36 final size:36
Alignment explanation
Indices: 102687049--102687140 Score: 157
Period size: 36 Copynumber: 2.6 Consensus size: 36
102687039 TACGACCGTT
*
102687049 TACGGTACTATTCATGTATATGACACTATTCACGTA
1 TACGGTACTATTCACGTATATGACACTATTCACGTA
*
102687085 TACGGTACTATTCACGTATATGGCACTATTCACGTA
1 TACGGTACTATTCACGTATATGACACTATTCACGTA
*
102687121 TACGGTACTGTTCACGTATA
1 TACGGTACTATTCACGTATA
102687141 CAGTAGTTGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (36 bp):
TACGGTACTATTCACGTATATGACACTATTCACGTA
Found at i:102687141 original size:18 final size:18
Alignment explanation
Indices: 102687049--102687141 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
102687039 TACGACCGTT
*
102687049 TACGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* **
102687067 TATGACACTATTCACGTA
1 TACGGTACTATTCACGTA
102687085 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
102687103 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
102687121 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
102687139 TAC
1 TAC
102687142 AGTAGTTGGG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:102691201 original size:11 final size:11
Alignment explanation
Indices: 102691185--102691227 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
102691175 TAGAATATAT
102691185 CCCATACCTTG
1 CCCATACCTTG
*
102691196 CCCATACCTTT
1 CCCATACCTTG
*
102691207 CCCATACC-TA
1 CCCATACCTTG
102691217 CCCATACCTTG
1 CCCATACCTTG
102691228 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:102691212 original size:22 final size:21
Alignment explanation
Indices: 102691184--102691226 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
102691174 TTAGAATATA
*
102691184 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
102691206 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
102691227 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:102694302 original size:46 final size:46
Alignment explanation
Indices: 102694226--102694724 Score: 660
Period size: 46 Copynumber: 10.8 Consensus size: 46
102694216 TGATGTCATA
* * * * *
102694226 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTC-ATTTCATATCATGTTGCCATG
* ***
102694272 GTATCTTTCAACCATTGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
* * *
102694319 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
*
102694365 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
** *
102694411 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
***
102694457 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
* *
102694504 GTATCTTTCAACCATGGTCTGACTT-ATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTA-TTCATTTCATATCATGTTGCCATG
* *
102694550 GTATCTTTCAACCATGGTTTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
***
102694596 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
* *
102694643 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
** *
102694689 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCA
102694725 GATAGCACAC
Statistics
Matches: 405, Mismatches: 42, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.00
46 284 0.70
47 117 0.29
48 2 0.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
Found at i:102694499 original size:139 final size:139
Alignment explanation
Indices: 102694226--102694724 Score: 750
Period size: 139 Copynumber: 3.6 Consensus size: 139
102694216 TGATGTCATA
* * * * * *
102694226 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATTGT
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGT
** *** * * **
102694290 CTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTC
65 CTTACACA-TTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTC
*
102694354 AGGTTGCCATG
129 ATGTTGCCATG
* *
102694365 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
102694430 TTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCAT
66 TTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCAT
102694495 GTTGCCATG
131 GTTGCCATG
* * *
102694504 GTATCTTTCAACCATGGTCTGACTTATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTT
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
**
102694569 TTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCAT
66 TTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCAT
102694634 GTTGCCATG
131 GTTGCCATG
102694643 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
*
102694708 TTACACATTCCATATCA
66 TTACACATTTCATATCA
102694725 GATAGCACAC
Statistics
Matches: 328, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
138 45 0.14
139 283 0.86
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.41
Consensus pattern (139 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCAT
GTTGCCATG
Found at i:102694543 original size:185 final size:184
Alignment explanation
Indices: 102694226--102694725 Score: 768
Period size: 185 Copynumber: 2.7 Consensus size: 184
102694216 TGATGTCATA
* * * *
102694226 GTATCTTTCAACTATGGTTTTACTCGTTTTCTGTCATGTTGCCATGGTATCTTTCAACCATTGTC
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTC
* *
102694291 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
65 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTGACTCATTTCATATCAG
102694356 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
130 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
* * *
102694411 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGGTC
*
102694476 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTGACTTATTTCATATCAG
65 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTGACTCATTTCATATCAG
*
102694541 GTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCATATCACGTTGCCATG
130 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
* *
102694596 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACCATGGTCTTACTCA-TTT-CTGTCATGTTGCCATGGTATCTTTCAACCATGGT
* *** * * * *
102694661 CTTACTCA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCA
64 CTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTGACTCATTTCATATCA
102694725 G
129 G
102694726 ATAGCACACT
Statistics
Matches: 287, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
184 4 0.01
185 242 0.84
186 40 0.14
187 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (184 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCT
TATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTGACTCATTTCATATCAGG
TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
Found at i:102694568 original size:25 final size:25
Alignment explanation
Indices: 102694495--102694568 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
102694485 TTCCCGTCAT
102694495 GTTGCCATGGTATCTTTCAACCATG
1 GTTGCCATGGTATCTTTCAACCATG
* *
102694520 GTCTGAC-T--TA--TTTCATATCA-G
1 GT-TGCCATGGTATCTTTCA-ACCATG
102694541 GTTGCCATGGTATCTTTCAACCATG
1 GTTGCCATGGTATCTTTCAACCATG
102694566 GTT
1 GTT
102694569 TTATTCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
20 3 0.08
21 9 0.24
22 3 0.08
23 4 0.11
24 3 0.08
25 12 0.32
26 3 0.08
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (25 bp):
GTTGCCATGGTATCTTTCAACCATG
Found at i:102699112 original size:27 final size:27
Alignment explanation
Indices: 102699060--102699117 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
102699050 TTAAAACTCT
* * *
102699060 TATTTATAATTGTATAACAATAAATAA
1 TATTTATAATGGAAAAACAATAAATAA
102699087 TATTTATAATGGAAAAATCAATAATATAA
1 TATTTATAATGGAAAAA-CAATAA-ATAA
102699116 TA
1 TA
102699118 AACAACAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 14 0.54
28 6 0.23
29 6 0.23
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.38
Consensus pattern (27 bp):
TATTTATAATGGAAAAACAATAAATAA
Found at i:102700625 original size:14 final size:14
Alignment explanation
Indices: 102700597--102700630 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
102700587 TTTAAAAATT
102700597 AAATACTTTTAAAA
1 AAATACTTTTAAAA
102700611 AAATATCTTTTAAAA
1 AAATA-CTTTTAAAA
102700626 AAATA
1 AAATA
102700631 AAAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATACTTTTAAAA
Found at i:102700626 original size:16 final size:15
Alignment explanation
Indices: 102700587--102700628 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
102700577 CGGCATGTAA
102700587 TTTAAAAATTAAATACT
1 TTTAAAAA--AAATACT
102700604 TTT-AAAAAAATATCT
1 TTTAAAAAAAATA-CT
102700619 TTTAAAAAAA
1 TTTAAAAAAA
102700629 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 10 0.43
17 3 0.13
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (15 bp):
TTTAAAAAAAATACT
Found at i:102701271 original size:15 final size:14
Alignment explanation
Indices: 102701244--102701270 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102701234 GGTTATAATA
102701244 AAATATTAAAAAAT
1 AAATATTAAAAAAT
102701258 AAATATTAAAAAA
1 AAATATTAAAAAA
102701271 AGGACATATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATATTAAAAAAT
Found at i:102704206 original size:24 final size:24
Alignment explanation
Indices: 102704177--102704225 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
102704167 GGTAAACAAA
102704177 TTGAAGCTAGAAGTTGAAATGATG
1 TTGAAGCTAGAAGTTGAAATGATG
*
102704201 TTGAAGCTTGAAGTTGAAATGATG
1 TTGAAGCTAGAAGTTGAAATGATG
102704225 T
1 T
102704226 AGCTGTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.33
Consensus pattern (24 bp):
TTGAAGCTAGAAGTTGAAATGATG
Found at i:102707459 original size:14 final size:14
Alignment explanation
Indices: 102707440--102707468 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
102707430 ACACTGAAGA
102707440 GTAAGATGACTTAC
1 GTAAGATGACTTAC
102707454 GTAAGATGACTTAC
1 GTAAGATGACTTAC
102707468 G
1 G
102707469 AACTAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (14 bp):
GTAAGATGACTTAC
Found at i:102715810 original size:13 final size:14
Alignment explanation
Indices: 102715792--102715820 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
102715782 TTATATCTGA
102715792 TTTTATTTTT-ATT
1 TTTTATTTTTAATT
102715805 TTTTATTTTTAATT
1 TTTTATTTTTAATT
102715819 TT
1 TT
102715821 GCCCTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTATTTTTAATT
Found at i:102719947 original size:40 final size:40
Alignment explanation
Indices: 102719889--102720003 Score: 146
Period size: 40 Copynumber: 2.9 Consensus size: 40
102719879 ATTATGTTTG
102719889 GCACTT-GTGTGCGT-ATCGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGC-TAATCGAGATAGCTTCGGCTATATAAA
* * **
102719928 GCACTTAGTGTGCTAATCGAAATAGCTTCGACTATATATG
1 GCACTTAGTGTGCTAATCGAGATAGCTTCGGCTATATAAA
102719968 GCACTTAGTGTGCTAGA-CTGAGATAGCTTCGGCTAT
1 GCACTTAGTGTGCTA-ATC-GAGATAGCTTCGGCTAT
102720004 GAGAGGTAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
39 7 0.11
40 43 0.65
41 16 0.24
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCTAATCGAGATAGCTTCGGCTATATAAA
Found at i:102721330 original size:19 final size:19
Alignment explanation
Indices: 102721306--102721343 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
102721296 GCGTGTCTGG
102721306 TGTCACACGGCCTGTTCAC
1 TGTCACACGGCCTGTTCAC
102721325 TGTCACACGGCCTGTTCAC
1 TGTCACACGGCCTGTTCAC
102721344 GTGGGCGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.37, G:0.21, T:0.26
Consensus pattern (19 bp):
TGTCACACGGCCTGTTCAC
Found at i:102721520 original size:17 final size:17
Alignment explanation
Indices: 102721481--102721513 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102721471 GTGAATGTTT
*
102721481 TAAATGGGTTTTGAGTA
1 TAAATGGATTTTGAGTA
102721498 TAAATGGATTTTGAGT
1 TAAATGGATTTTGAGT
102721514 GTGAATGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.42
Consensus pattern (17 bp):
TAAATGGATTTTGAGTA
Done.