Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 313 of 332
Found at i:102722018 original size:18 final size:18
Alignment explanation
Indices: 102721989--102722033 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
102721979 GGCTAGGCCG
102721989 TGTGGG-CCACACGAGAA
1 TGTGGGCCCACACGAGAA
* *
102722006 TGTGGGCCCACACGGGCA
1 TGTGGGCCCACACGAGAA
*
102722024 TGTAGGCCCA
1 TGTGGGCCCA
102722034 TTTTACTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.22, C:0.29, G:0.36, T:0.13
Consensus pattern (18 bp):
TGTGGGCCCACACGAGAA
Found at i:102722469 original size:26 final size:26
Alignment explanation
Indices: 102722433--102722485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
102722423 GTGTGTAGAG
102722433 GATTTTGTAATATGATATCTGAATCT
1 GATTTTGTAATATGATATCTGAATCT
*
102722459 GATTTTGTAATTTGATATCTGAATCT
1 GATTTTGTAATATGATATCTGAATCT
102722485 G
1 G
102722486 GATCTGTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (26 bp):
GATTTTGTAATATGATATCTGAATCT
Found at i:102722493 original size:26 final size:26
Alignment explanation
Indices: 102722433--102722493 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
102722423 GTGTGTAGAG
*
102722433 GATTTTGTAATATGATATCTGAATCT
1 GATTCTGTAATATGATATCTGAATCT
* *
102722459 GATTTTGTAATTTGATATCTGAATCT
1 GATTCTGTAATATGATATCTGAATCT
102722485 GGA-TCTGTA
1 -GATTCTGTA
102722494 TCTGTTTCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (26 bp):
GATTCTGTAATATGATATCTGAATCT
Found at i:102724259 original size:44 final size:42
Alignment explanation
Indices: 102724179--102724337 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
102724169 TTTCGTTATG
* * **
102724179 TGATTTCGTGTAAGACCACGTCTGAGACGTTGGCATCG-ACTTC
1 TGATTTCGTGTAAGACCATGTCTGAGACATCAGCATCGTA--TC
* *
102724222 TGTTTTATGTGTAAGACCATGTCTGAGACATCAGCATCGTATC
1 TGATTT-CGTGTAAGACCATGTCTGAGACATCAGCATCGTATC
* * * * *
102724265 TGATTTCGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATGTT
1 TGATTTCGTGTAAGACCATGTCTGAGACA-TCAGCATCG-TATC
* * * *
102724308 TGATTACATGTAAGACCACGTCTGGGACAT
1 TGATTTCGTGTAAGACCATGTCTGAGACAT
102724338 TGGCATTGTA
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.28
43 40 0.42
44 27 0.28
45 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGAGACATCAGCATCGTATC
Found at i:102724287 original size:42 final size:42
Alignment explanation
Indices: 102724179--102724293 Score: 117
Period size: 44 Copynumber: 2.7 Consensus size: 42
102724169 TTTCGTTATG
* **
102724179 TGATTTCGTGTAAGACCAC-GTCTGAGACGTTGGCATCGACTTC
1 TGATTTCGTGTAAGACC-CTGTCTGAGACATCAGCATCGAC-TC
* * *
102724222 TGTTTTATGTGTAAGACCATGTCTGAGACATCAGCATCGTA-TC
1 TGATTT-CGTGTAAGACCCTGTCTGAGACATCAGCATCG-ACTC
*
102724265 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTTCGTGTAAGACCCTGTCTGAGACA
102724294 GTGGCATCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 20 0.34
43 12 0.20
44 26 0.44
45 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGAGACATCAGCATCGACTC
Found at i:102726971 original size:22 final size:21
Alignment explanation
Indices: 102726928--102726971 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
102726918 TAAATGTCTA
* * *
102726928 AATGATACTGAATATTGGTTG
1 AATGATAATGAAAATTGATTG
102726949 AATGATAATGAAAAATTGATTG
1 AATGATAATG-AAAATTGATTG
102726971 A
1 A
102726972 TGTTGAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (21 bp):
AATGATAATGAAAATTGATTG
Found at i:102731541 original size:51 final size:51
Alignment explanation
Indices: 102731465--102731567 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
102731455 GAATCCGATG
102731465 ATTGTTTGCTATTTAGAAATAGAAGTTGTACCAAAGAATTCAGAAGCTTAT
1 ATTGTTTGCTATTTAGAAATAGAAGTTGTACCAAAGAATTCAGAAGCTTAT
*
102731516 ATTGTTTGCTATTTAGAAATAGAAGTTGTACCGAAGAATTCAGAAGCTTAT
1 ATTGTTTGCTATTTAGAAATAGAAGTTGTACCAAAGAATTCAGAAGCTTAT
102731567 A
1 A
102731568 CAGAATATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (51 bp):
ATTGTTTGCTATTTAGAAATAGAAGTTGTACCAAAGAATTCAGAAGCTTAT
Found at i:102734712 original size:18 final size:18
Alignment explanation
Indices: 102734689--102734747 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
102734679 AATTGACCGC
102734689 TACTGAATAATCGACTAT
1 TACTGAATAATCGACTAT
102734707 TACTG-ATCAAT-GAC-AGT
1 TACTGAAT-AATCGACTA-T
*
102734724 TACTGAATAA-CTGATTAT
1 TACTGAATAATC-GACTAT
102734742 TACTGA
1 TACTGA
102734748 TGACTGACTG
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
16 1 0.03
17 13 0.38
18 19 0.56
19 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAATCGACTAT
Found at i:102737896 original size:43 final size:42
Alignment explanation
Indices: 102737733--102737897 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 42
102737723 TTTTGTTATG
*
102737733 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTC
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTC
* * * *
102737776 TGTTTTACGTGTAAGACCATGTCTGAGACATTGGCATC-ATATC
1 TG-ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TC
* * * *
102737819 TGATTTCGTGTAAGACC-CTATCTAGGACAG-TGGCATCGATGTT
1 TGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TC
*
102737862 TGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
102737898 TGTATATGTT
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.29
43 38 0.39
44 31 0.32
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (42 bp):
TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTC
Found at i:102742353 original size:17 final size:17
Alignment explanation
Indices: 102742321--102742354 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
102742311 ACGGTTAGAA
*
102742321 ATTTGAATTGATTAAAT
1 ATTTGAATTGAGTAAAT
*
102742338 ATTTGAATTTAGTAAAT
1 ATTTGAATTGAGTAAAT
102742355 TACTTTAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
ATTTGAATTGAGTAAAT
Found at i:102743940 original size:27 final size:27
Alignment explanation
Indices: 102743902--102744010 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 27
102743892 AAGCATCCTA
* *
102743902 GTGGCTATGCCACAATTATTTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
102743929 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
*
102743956 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * *
102743984 GTGACTCTGTCAC-ATTATCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
102744010 G
1 G
102744011 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.63
28 18 0.25
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:102744005 original size:54 final size:54
Alignment explanation
Indices: 102743902--102744010 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
102743892 AAGCATCCTA
* * *
102743902 GTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
* * *
102743956 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCTG
102744010 G
1 G
102744011 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
Found at i:102749164 original size:26 final size:27
Alignment explanation
Indices: 102749098--102749167 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
102749088 CATTAGAATA
*
102749098 CAATCAAATACAGTCTAGGCCTGAGCC
1 CAATCAGATACAGTCTAGGCCTGAGCC
* * * *
102749125 TAGTACAGATACAGT-TTGGCCTTAGCC
1 CAAT-CAGATACAGTCTAGGCCTGAGCC
102749152 CAATCAGATACAGTCT
1 CAATCAGATACAGTCT
102749168 CAGATATATG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
26 10 0.29
27 15 0.44
28 9 0.26
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (27 bp):
CAATCAGATACAGTCTAGGCCTGAGCC
Found at i:102755357 original size:5 final size:5
Alignment explanation
Indices: 102755347--102755374 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
102755337 TTGTGTCTTC
102755347 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
102755375 TTACAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:102761495 original size:46 final size:45
Alignment explanation
Indices: 102761438--102761613 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 45
102761428 TATTTGGGCA
102761438 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AATG
* *
102761484 TCCTAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTAA-T--G
* * *
102761529 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-TAATG
* * *
102761577 CCCGAACTCATTGTGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102761614 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 3 0.03
43 8 0.07
45 1 0.01
46 60 0.56
47 26 0.24
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAATG
Found at i:102761595 original size:93 final size:93
Alignment explanation
Indices: 102761434--102761604 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
102761424 AGGATATTTG
** * * * *
102761434 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCTAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
102761499 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* *
102761527 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
102761592 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
102761605 CACTTATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:102766767 original size:19 final size:20
Alignment explanation
Indices: 102766738--102766778 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
102766728 GAGTTGTTTT
102766738 CAATATCCACACGGCCTGGC
1 CAATATCCACACGGCCTGGC
* *
102766758 CAAT-TCCACATGGGCTGGC
1 CAATATCCACACGGCCTGGC
102766777 CA
1 CA
102766779 CACACCCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.24, C:0.37, G:0.22, T:0.17
Consensus pattern (20 bp):
CAATATCCACACGGCCTGGC
Found at i:102772335 original size:15 final size:15
Alignment explanation
Indices: 102772312--102772371 Score: 77
Period size: 15 Copynumber: 4.0 Consensus size: 15
102772302 GTATCGCATC
*
102772312 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
102772327 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* *
102772342 TTGGGTTT-TTCTATC
1 TTGGATTTCTT-TATT
102772357 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
102772372 CGGTTTTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 2 0.05
15 34 0.89
16 2 0.05
ACGTcount: A:0.10, C:0.08, G:0.17, T:0.65
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:102772348 original size:30 final size:30
Alignment explanation
Indices: 102772312--102772371 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
102772302 GTATCGCATC
*
102772312 TTGGGTTTCTT-TATTTTGGATTTCTTTATT
1 TTGGGTTT-TTCTATCTTGGATTTCTTTATT
102772342 TTGGGTTTTTCTATCTTGGATTTCTTTATT
1 TTGGGTTTTTCTATCTTGGATTTCTTTATT
102772372 CGGTTTTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.10, C:0.08, G:0.17, T:0.65
Consensus pattern (30 bp):
TTGGGTTTTTCTATCTTGGATTTCTTTATT
Found at i:102774634 original size:51 final size:49
Alignment explanation
Indices: 102774514--102774652 Score: 188
Period size: 49 Copynumber: 2.8 Consensus size: 49
102774504 TATTGTGAAG
* * * *
102774514 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAATTGA
* * *
102774563 TCGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGAAAACTGTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAA-T-TGA
*
102774614 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
102774653 AGATAGCTTC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 39 0.51
50 1 0.01
51 37 0.48
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAATTGA
Found at i:102778281 original size:12 final size:12
Alignment explanation
Indices: 102778264--102778288 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102778254 CTAATATGTA
102778264 TGTATGTTGTTG
1 TGTATGTTGTTG
102778276 TGTATGTTGTTG
1 TGTATGTTGTTG
102778288 T
1 T
102778289 TGTTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (12 bp):
TGTATGTTGTTG
Found at i:102778288 original size:15 final size:16
Alignment explanation
Indices: 102778260--102778291 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
102778250 ACTACTAATA
102778260 TGTATGTATGTTGTTG
1 TGTATGTATGTTGTTG
102778276 TGTATGT-TGTTGTTG
1 TGTATGTATGTTGTTG
102778291 T
1 T
102778292 TTTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.09, C:0.00, G:0.31, T:0.59
Consensus pattern (16 bp):
TGTATGTATGTTGTTG
Found at i:102783696 original size:26 final size:25
Alignment explanation
Indices: 102783664--102783722 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
102783654 TTTTAGTCCT
*
102783664 TTTATTTCTTTTAAAAAATTT-TATAA
1 TTTATTTATTTT-AAAAATTTATAT-A
102783690 TTTATTTATTTTAAAAATTTATATA
1 TTTATTTATTTTAAAAATTTATATA
102783715 TATTATTT
1 T-TTATTT
102783723 TTATATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTATTTATTTTAAAAATTTATATA
Found at i:102783729 original size:17 final size:17
Alignment explanation
Indices: 102783709--102783767 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
102783699 TTTAAAAATT
102783709 TATATATATTATTTTTA
1 TATATATATTATTTTTA
*
102783726 TATAAATATTATTTTTA
1 TATATATATTATTTTTA
*
102783743 TATATCAT-TTCATATTTA
1 TATAT-ATATT-ATTTTTA
102783761 TATATAT
1 TATATAT
102783768 TTTAAATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 24 0.65
18 13 0.35
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TATATATATTATTTTTA
Found at i:102783737 original size:26 final size:24
Alignment explanation
Indices: 102783677--102783737 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 24
102783667 ATTTCTTTTA
*
102783677 AAAAATTTTATAATTTATTTATTTT
1 AAAAA-TTTATAATTTATTTATTAT
102783702 AAAAATTTATATATATTATTT-TTAT
1 AAAAATTTATA-AT-TTATTTATTAT
*
102783727 ATAAATATTAT
1 AAAAAT-TTAT
102783738 TTTTATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 6 0.19
25 15 0.48
26 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
AAAAATTTATAATTTATTTATTAT
Found at i:102789062 original size:13 final size:13
Alignment explanation
Indices: 102789041--102789070 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
102789031 AGATATATTG
*
102789041 AAAATTTTAAAAA
1 AAAAATTTAAAAA
102789054 AAAAATTTAAAAA
1 AAAAATTTAAAAA
102789067 AAAA
1 AAAA
102789071 CTCAAAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAATTTAAAAA
Found at i:102793213 original size:19 final size:19
Alignment explanation
Indices: 102793186--102793224 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
102793176 AATAAAACAA
102793186 ATAACAAT-ATAAAATATAT
1 ATAACAATAAT-AAATATAT
*
102793205 ATAATAATAATAAATATAT
1 ATAACAATAATAAATATAT
102793224 A
1 A
102793225 GGGTTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAACAATAATAAATATAT
Found at i:102794769 original size:45 final size:45
Alignment explanation
Indices: 102794709--102794853 Score: 209
Period size: 45 Copynumber: 3.2 Consensus size: 45
102794699 ATCTGTTACG
* * * *
102794709 TCTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
102794754 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* * ***
102794799 TCTTGAATCTACTCCCCGTCCATTACGGAGAGATAAGATCCACCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
102794844 TCTTGGATCT
1 TCTTGGATCT
102794854 GCCCCGATGA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (45 bp):
TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
Found at i:102794928 original size:82 final size:82
Alignment explanation
Indices: 102794805--102795265 Score: 649
Period size: 82 Copynumber: 5.6 Consensus size: 82
102794795 GTCATCTTGA
* * * * ***
102794805 ATCTACTCCCCGTCCATTACGGAGAGATAAGATCCACCATCTTGGATCTGCCCCGATGAAGGTCA
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
*
102794870 GATCTGATATGTCTTTG
66 GATCTGATATGTCTTCG
* * *
102794887 ATCTGCTCTCCGTCGAATACAGAGAGATAAGATATGTCATCTTGGATTTGCCCCGATGAAGGTCA
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
102794952 GATCT-ACTATGTCTTCG
66 GATCTGA-TATGTCTTCG
* * * * *
102794969 ATCTGATTCCCGTCAAATACAGAGAGATAAGATCTATCATCTTGGATCTACCCCGATGAAGGTCA
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
* *
102795034 GATCTGCTATGTCTTTG
66 GATCTGATATGTCTTCG
*
102795051 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTATCATCTTGGATCTGCCCCGATGAAGGTCA
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
*
102795116 AATCT-ACTATGTCTTCG
66 GATCTGA-TATGTCTTCG
*
102795133 ATCTGCTCCCTGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
102795198 GATCT-ACTATGTCTTCG
66 GATCTGA-TATGTCTTCG
* * * *
102795215 ATATGTTCCCTGTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTGC
1 ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGC
102795266 TCTCCATCTA
Statistics
Matches: 342, Mismatches: 34, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
81 1 0.00
82 341 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (82 bp):
ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCA
GATCTGATATGTCTTCG
Found at i:102795100 original size:45 final size:46
Alignment explanation
Indices: 102795033--102795345 Score: 149
Period size: 45 Copynumber: 7.2 Consensus size: 46
102795023 GATGAAGGTC
* *
102795033 AGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATA
1 AGATCTACTAT-TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
*
102795080 AGATCTA-TCA-TCTTGGATCTG---CCC--CG-AT---GA-AGGTCA
1 AGATCTACT-ATTCTTGGATCTGCTCCCCGTCGAATACAGAGAGAT-A
* *
102795116 A-ATCTACTATGTCTTCGATCTGCTCCCTGTCGAATACAGAGAGATA
1 AGATCTACTAT-TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
* * *
102795162 AGATCT-GTCA-TCTTGGATCTG---CCC--CG-AT---GA-AGGTC
1 AGATCTACT-ATTCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
* * * * *
102795197 AGATCTACTATGTCTTCGATATGTTCCCTGTCAAATACAGAGAGATA
1 AGATCTACTAT-TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
* * * * *
102795244 AGATCT-GTCA-TCTTGGATCTGCTCTCCATCTATTACAGAGAGATA
1 AGATCTACT-ATTCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
* ** * * * *
102795289 AGATCTACTATTTTTTTATATGTTCCCTGTCGAATACAGAGAAATA
1 AGATCTACTATTCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
102795335 AGATCTACTAT
1 AGATCTACTAT
102795346 CTTTAACTTG
Statistics
Matches: 194, Mismatches: 39, Indels: 67
0.65 0.13 0.22
Matches are distributed among these distances:
35 19 0.10
36 8 0.04
37 19 0.10
39 4 0.02
40 8 0.04
42 8 0.04
43 4 0.02
45 54 0.28
46 45 0.23
47 25 0.13
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (46 bp):
AGATCTACTATTCTTGGATCTGCTCCCCGTCGAATACAGAGAGATA
Found at i:102795150 original size:246 final size:250
Alignment explanation
Indices: 102794669--102795263 Score: 812
Period size: 246 Copynumber: 2.4 Consensus size: 250
102794659 AGATGCCAAA
* * * ** * * *
102794669 TCATCTTGGATCTGCCTCAATGAAGGTCAAATCTGTTACGTCTTCGATCTGCTCCCCGTCGAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTG-TTCCCGTCAAATA
* *
102794734 CAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
65 CAGAGAGATAAGATCTGTCATCTTGGATCTAC-CCCCG--CATGACAGAGAGATAAGATATGTCA
* *
102794799 TCTTGAATCTACTCCCCGTCCATTACGGAGAGATAAGATCCACCATCTTGGATCTGCCCCGATGA
127 TCTTGAATCTACTCCCCGTCCAATACAGAGAGATAAGATCCACCATCTTGGATCTGCCCCGATGA
* *
102794864 AGGTCAGATCTGATATGTCTTTGATCTGCTCTCCGTCGAATACAGAGAGATAAGATATG
192 AGGTCAAATCTGATATGTCTTCGATCTGCTCTCCGTCGAATACAGAGAGATAAGATATG
*
102794923 TCATCTTGGATTTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGATTCCCGTCAAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTG-TTCCCGTCAAATA
* ** *
102794988 CAGAGAGATAAGATCTATCATCTTGGATCTA-CCCCG-ATGA-AG-GTCAGATCTGCTATGTC-T
65 CAGAGAGATAAGATCTGTCATCTTGGATCTACCCCCGCATGACAGAG--AGATAAGATATGTCAT
* * * *
102795048 -TTG-ATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTATCATCTTGGATCTGCCCCGATGAA
128 CTTGAATCTACTCCCCGTCCAATACAGAGAGATAAGATCCACCATCTTGGATCTGCCCCGATGAA
*
102795111 GGTCAAATCT-ACTATGTCTTCGATCTGCTC-CCTGTCGAATACAGAGAGATAAGATCTG
193 GGTCAAATCTGA-TATGTCTTCGATCTGCTCTCC-GTCGAATACAGAGAGATAAGATATG
*
102795169 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATATGTTCCCTGTCAAATA
1 TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGTTCCC-GTCAAATA
102795234 CAGAGAGATAAGATCTGTCATCTTGGATCT
65 CAGAGAGATAAGATCTGTCATCTTGGATCT
102795264 GCTCTCCATC
Statistics
Matches: 308, Mismatches: 28, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
245 8 0.03
246 190 0.62
247 4 0.01
248 3 0.01
249 13 0.04
252 5 0.02
254 85 0.28
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (250 bp):
TCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGTTCCCGTCAAATAC
AGAGAGATAAGATCTGTCATCTTGGATCTACCCCCGCATGACAGAGAGATAAGATATGTCATCTT
GAATCTACTCCCCGTCCAATACAGAGAGATAAGATCCACCATCTTGGATCTGCCCCGATGAAGGT
CAAATCTGATATGTCTTCGATCTGCTCTCCGTCGAATACAGAGAGATAAGATATG
Found at i:102795262 original size:164 final size:163
Alignment explanation
Indices: 102794668--102795265 Score: 725
Period size: 164 Copynumber: 3.6 Consensus size: 163
102794658 GAGATGCCAA
* * * ** *
102794668 ATCATCTTGGATCTGCCTCAATGAAGGTCAAATCTGTTACGTCTTCGATCTGCTCCCCGTCGAAT
1 ATCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCGAAT
* * ** ** *
102794733 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGAT-CTGT
66 ACAGAGAGATAAGATCTGTCATCTTGGATCT--GCCCCG---ATGA-AG-GTCA-AATCTACTAT
* * * * * *
102794797 CATCTT-GAATCTACTCCCCGTCCATTACGGAGAGATAAGATCC
123 -GTCTTCG-ATCTGCT-CCCGTCAAATACAGAGAGATAAGATCT
* * *
102794840 ACCATCTTGGATCTGCCCCGATGAAGGTCAGATCTGA-TATGTCTTTGATCTGCTCTCCGTCGAA
1 ATCATCTTGGATCTGCCCCGATGAAGGTCAGATCT-ACTATGTCTTCGATCTGCTCCCCGTCGAA
* * *
102794904 TACAGAGAGATAAGATATGTCATCTTGGATTTGCCCCGATGAAGGTCAGATCTACTATGTCTTCG
65 TACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCAAATCTACTATGTCTTCG
*
102794969 ATCTGATTCCCGTCAAATACAGAGAGATAAGATCT
130 ATCTG-CTCCCGTCAAATACAGAGAGATAAGATCT
* * *
102795004 ATCATCTTGGATCTACCCCGATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAAT
1 ATCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCGAAT
*
102795069 ACAGAGAGATAAGATCTATCATCTTGGATCTGCCCCGATGAAGGTCAAATCTACTATGTCTTCGA
66 ACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCAAATCTACTATGTCTTCGA
*
102795134 TCTGCTCCCTGTCGAATACAGAGAGATAAGATCT
131 TCTGCTCCC-GTCAAATACAGAGAGATAAGATCT
* * * * *
102795168 GTCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATATGTTCCCTGTCAAAT
1 ATCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCGAAT
102795233 ACAGAGAGATAAGATCTGTCATCTTGGATCTGC
66 ACAGAGAGATAAGATCTGTCATCTTGGATCTGC
102795266 TCTCCATCTA
Statistics
Matches: 376, Mismatches: 44, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
163 4 0.01
164 270 0.72
165 7 0.02
166 2 0.01
167 3 0.01
170 5 0.01
172 85 0.23
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (163 bp):
ATCATCTTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCGAAT
ACAGAGAGATAAGATCTGTCATCTTGGATCTGCCCCGATGAAGGTCAAATCTACTATGTCTTCGA
TCTGCTCCCGTCAAATACAGAGAGATAAGATCT
Found at i:102801931 original size:6 final size:6
Alignment explanation
Indices: 102801911--102801955 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
102801901 TTCGGGGGGC
* *
102801911 TTGACT TTGATTT TTGATT TTGACT TTGACT TTGACT TTGACT TT
1 TTGACT TTGA-CT TTGACT TTGACT TTGACT TTGACT TTGACT TT
102801956 TTATTTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (6 bp):
TTGACT
Found at i:102804561 original size:23 final size:23
Alignment explanation
Indices: 102804534--102804577 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
102804524 GCAGAGAAAT
*
102804534 AACAGTAGCAAAACCAAGTCATG
1 AACAGTAACAAAACCAAGTCATG
*
102804557 AACAGTAACAAAATCAAGTCA
1 AACAGTAACAAAACCAAGTCA
102804578 AGTGTAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.20, G:0.14, T:0.14
Consensus pattern (23 bp):
AACAGTAACAAAACCAAGTCATG
Found at i:102805729 original size:12 final size:11
Alignment explanation
Indices: 102805612--102805736 Score: 85
Period size: 9 Copynumber: 13.1 Consensus size: 11
102805602 TTATTTGTGC
102805612 CTATATTATTAT
1 CTAT-TTATTAT
102805624 -TA-TTATTAT
1 CTATTTATTAT
102805633 -TA-TTATTAT
1 CTATTTATTAT
102805642 -TA-TTATTAT
1 CTATTTATTAT
102805651 -TA-TTATTAT
1 CTATTTATTAT
102805660 -TA-TTATTAT
1 CTATTTATTAT
102805669 -TA-TTATTAT
1 CTATTTATTAT
102805678 -TA-TTATTAT
1 CTATTTATTAT
102805687 -TA-TTATTAT
1 CTATTTATTAT
102805696 -TA-TTATTAT
1 CTATTTATTAT
102805705 -TA-TTATTAT
1 CTATTTATTAT
102805714 -TATTTATCTAT
1 CTATTTAT-TAT
102805725 CTATTTATTAT
1 CTATTTATTAT
102805736 C
1 C
102805737 CTATATATAT
Statistics
Matches: 110, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
9 90 0.82
10 4 0.04
11 9 0.08
12 7 0.06
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (11 bp):
CTATTTATTAT
Found at i:102805735 original size:3 final size:3
Alignment explanation
Indices: 102805615--102805717 Score: 206
Period size: 3 Copynumber: 34.3 Consensus size: 3
102805605 TTTGTGCCTA
102805615 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102805663 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102805711 TAT TAT T
1 TAT TAT T
102805718 TATCTATCTA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 100 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:102805988 original size:3 final size:3
Alignment explanation
Indices: 102805980--102806004 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
102805970 TCACACACTT
102805980 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
102806005 ATTCTATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:102807946 original size:19 final size:20
Alignment explanation
Indices: 102807906--102807949 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
102807896 GCCTCTTTTG
* *
102807906 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
102807925 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
102807944 GCATTA
1 GCATTA
102807950 AATTTCACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:102811554 original size:12 final size:12
Alignment explanation
Indices: 102811519--102811561 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
102811509 ACTTTACTAA
102811519 AAAAAAGAAAGA-
1 AAAAAAGAAA-AT
*
102811531 AATAAAATAAAAT
1 AA-AAAAGAAAAT
102811544 AAAAAAGAAAAT
1 AAAAAAGAAAAT
102811556 AAAAAA
1 AAAAAA
102811562 AAAGAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.84, C:0.00, G:0.07, T:0.09
Consensus pattern (12 bp):
AAAAAAGAAAAT
Found at i:102811555 original size:22 final size:22
Alignment explanation
Indices: 102811516--102811577 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
102811506 AATACTTTAC
102811516 TAAAAAAAAGAAAG-AAATAAAA
1 TAAAAAAAA-AAAGAAAATAAAA
*
102811538 TAAAATAAAAAAGAAAATAAAA
1 TAAAAAAAAAAAGAAAATAAAA
102811560 -AAAAAGAAAAAAGGAAAA
1 TAAAAA-AAAAAA-GAAAA
102811578 GAAAGGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 8 0.23
22 22 0.63
23 5 0.14
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (22 bp):
TAAAAAAAAAAAGAAAATAAAA
Found at i:102811577 original size:15 final size:15
Alignment explanation
Indices: 102811534--102811569 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
102811524 AGAAAGAAAT
102811534 AAAATAAAATAAAAAAG
1 AAAAT-AAA-AAAAAAG
102811551 AAAATAAAAAAAAAG
1 AAAATAAAAAAAAAG
102811566 AAAA
1 AAAA
102811570 AAGGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.86, C:0.00, G:0.06, T:0.08
Consensus pattern (15 bp):
AAAATAAAAAAAAAG
Found at i:102811577 original size:18 final size:18
Alignment explanation
Indices: 102811556--102811590 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102811546 AAAAGAAAAT
102811556 AAAAAAAAAGAAAAAAGG
1 AAAAAAAAAGAAAAAAGG
* *
102811574 AAAAGAAAGGAAAAAAG
1 AAAAAAAAAGAAAAAAG
102811591 AGAGGCCAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAGG
Found at i:102812492 original size:44 final size:44
Alignment explanation
Indices: 102812438--102813067 Score: 429
Period size: 44 Copynumber: 14.2 Consensus size: 44
102812428 AAATCCCGTA
* * *
102812438 TCCCTGAAGTTGCAGTAGAGCAGATTAAAGTCACAAACCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
* * *
102812482 TCTCTAAAGTTGCAGTGGA--A-AAT-AA--T--AAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
* * * *
102812518 TCTCTGAAGTTTCAGTGGAGTAGATTGCAA-TTACAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATT-AAAGTTACAAATCTTATC
** * * *
102812562 TCCCTGAAGTTGCAGTGGATTAGGTTGAAGTTAGCAAACCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-CAAATCTTATC
* * * *
102812607 -CCTCTGAAGTTACAGTGGGGCAGGTTGAAGTTA-AAAGTCTTATC
1 TCC-CTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAA-TCTTATC
* * * *
102812651 TCCCTAAAGTTGCAGTGGAGCAGACTAAAAGTTACAAACCTTATT
1 TCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGTTACAAATCTTATC
* * * * *
102812696 TCCCTAAAGTTGCAGTAGAGCAGGTTGAAGTTACAAATTTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
* * *
102812740 TCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTTACAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGTTACAAATCTTATC
* * * * *
102812785 TCCCAGAAGTTGCAGTGGAGCAGATTGAA-TCCACTAGTCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-TACAAATCTTATC
** * ** ** *
102812829 TCCCTGAAGTTATAGTGAAGTGGATCGAAGATAGCAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-CAAATCTTATC
** * * * * *
102812874 TATCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAACCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
* * * * * * * *
102812918 TCTCTGAAGTTTCATTGGAGTAGATTGAAGTCACTAGTCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
* * *
102812962 TCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTAAAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATT--A---A--AGTTACAAATCTTATC
* * * * **
102813013 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCCAATCAAATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
102813057 TCCCTGAAGTT
1 TCCCTGAAGTT
102813068 ATAGTAGAGT
Statistics
Matches: 454, Mismatches: 106, Indels: 52
0.74 0.17 0.08
Matches are distributed among these distances:
36 26 0.06
38 1 0.00
39 2 0.00
40 2 0.00
41 4 0.01
42 2 0.00
43 6 0.01
44 228 0.50
45 142 0.31
46 4 0.01
49 1 0.00
51 36 0.08
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (44 bp):
TCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATC
Found at i:102812663 original size:89 final size:86
Alignment explanation
Indices: 102812512--102813042 Score: 398
Period size: 89 Copynumber: 5.9 Consensus size: 86
102812502 AATAATAAAT
* * *
102812512 CTTATCTCTCTGAAGTTTCAGTGGAGTAGATTGCAATTACAAATCTTATCTCCCTGAAGTTGCAG
1 CTTATC-CCCTGAAGTTGCAGTGGAGCAGATTG-AATTACAAATCTTATCTCCCTGAAGTTGCAG
* *
102812577 TGGATTAGGTTGAAGTTAGCAAAC
64 TGGAGTAGATTGAAGTTA-CAAAC
* * * *
102812601 CTTATCCCTCTGAAGTTACAGTGGGGCAGGTTGAAGTTA-AAAGTCTTATCTCCCTAAAGTTGCA
1 CTTATCCC-CTGAAGTTGCAGTGGAGCAGATTGAA-TTACAAA-TCTTATCTCCCTGAAGTTGCA
* **
102812665 GTGGAGCAGACTAAAAGTTACAAAC
63 GTGGAGTAGA-TTGAAGTTACAAAC
* * * * *
102812690 CTTATTTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGTTACAAATTTTATCTCCCTGAAGTTGCAG
1 CTTA-TCCCCTGAAGTTGCAGTGGAGCAGATTGAA-TTACAAATCTTATCTCCCTGAAGTTGCAG
* *
102812755 TGGAGTAGACTGAAGGTTACAAAT
64 TGGAGTAGATTGAA-GTTACAAAC
* * * * **
102812779 CTTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAATCCACTAGTCTTATCTCCCTGAAGTTATAG
1 CTTATC-CCCTGAAGTTGCAGTGGAGCAGATTGAAT-TACAAATCTTATCTCCCTGAAGTTGCAG
* * * * *
102812844 TGAAGTGGATCGAAGATAGCAAAT
64 TGGAGTAGATTGAAGTTA-CAAAC
** * * * * * * * * *
102812868 CTTATCTATCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAACCTTATCTCTCTGAAGTTTCAT
1 CTTATC-CCCTGAAGTTGCAGTGGAGCAGATTGAA-TTACAAATCTTATCTCCCTGAAGTTGCAG
* * **
102812933 TGGAGTAGATTGAAGTCACTAGT
64 TGGAGTAGATTGAAGTTACAAAC
* * *
102812956 CTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTAAAAATCTTATCTCCCTGAA
1 CTTATC-CCCTGAAGTTGCAGTGGAGCAGATT---G--A--A-TTACAAATCTTATCTCCCTGAA
*
102813021 GTTGCAGTGGAGCAGATTGAAG
57 GTTGCAGTGGAGTAGATTGAAG
102813043 ATGCCAATCA
Statistics
Matches: 348, Mismatches: 76, Indels: 30
0.77 0.17 0.07
Matches are distributed among these distances:
88 42 0.12
89 253 0.73
90 13 0.04
93 1 0.00
95 39 0.11
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (86 bp):
CTTATCCCCTGAAGTTGCAGTGGAGCAGATTGAATTACAAATCTTATCTCCCTGAAGTTGCAGTG
GAGTAGATTGAAGTTACAAAC
Found at i:102812893 original size:178 final size:177
Alignment explanation
Indices: 102812508--102812987 Score: 493
Period size: 178 Copynumber: 2.7 Consensus size: 177
102812498 GGAAAATAAT
* *
102812508 AAATCTTATCTCTCTGAAGTT-TCAGTGGAGTAGATTGCAA-TTACAAATCTTATCTCCCTGAAG
1 AAATCTTATCTCTCTGAAGTTGT-AGTAGAGCAGATTG-AAGTTACAAATCTTATCTCCCTGAAG
* * * * *
102812571 TTGCAGTGGATTAGGTTGAAGTTAGCAAACCTTATC-CCTCTGAAGTTACAGTGGGGCAGGTTGA
64 TTGCAGTGGAGTAGATTGAAGTTA-CAAATCTTATCTCC-CTGAAGTTACAGTGGAGCAGATTGA
* * * *
102812635 AGTTAAAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAAGTTAC
127 AGTCAAAAGTCTTATCTCCCTAAAGTTACAGTGAAGCAGACTAAAAGATAC
* * * * * * *
102812686 AAACCTTATTTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGTTACAAATTTTATCTCCCTGAAGTT
1 AAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
* * *
102812751 GCAGTGGAGTAGACTGAAGGTTACAAATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAA-T
66 GCAGTGGAGTAGATTGAA-GTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGT
** * * ** **
102812815 CCACTAGTCTTATCTCCCTGAAGTTATAGTGAAGTGGA-TCGAAGATAGC
130 -CAAAAGTCTTATCTCCCTAAAGTTACAGTGAAGCAGACTAAAAGATA-C
* * * * * *
102812864 AAATCTTATCTATCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAACCTTATCTCTCTGAAGTT
1 AAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
* * * * * *
102812929 TCATTGGAGTAGATTGAAGTCACTAGTCTTATCTCCCTGAAGTTACAGTGGAACAGATT
66 GCAGTGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT
102812988 AAAGCTACGA
Statistics
Matches: 245, Mismatches: 51, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
177 44 0.18
178 195 0.80
179 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (177 bp):
AAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
GCAGTGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTC
AAAAGTCTTATCTCCCTAAAGTTACAGTGAAGCAGACTAAAAGATAC
Found at i:102814629 original size:3 final size:3
Alignment explanation
Indices: 102814621--102814665 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
102814611 TTTGTGTCTA
* * *
102814621 TAT TAT TAT TAT TAT TGT CAT TAA TAT TAT TAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
102814666 TATTTATCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:102814633 original size:21 final size:22
Alignment explanation
Indices: 102814603--102814659 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
102814593 CATTAATCTT
102814603 TTATT-TTATTTGTGTC-T-ATA
1 TTATTATTATTT-TGTCATAATA
102814623 TTATTATTATTATTGTCATTAATA
1 TTATTATTATT-TTGTCA-TAATA
102814647 TTATTATTATTTT
1 TTATTATTATTTT
102814660 ATTATTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.16
21 9 0.28
22 1 0.03
23 3 0.09
24 14 0.44
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (22 bp):
TTATTATTATTTTGTCATAATA
Found at i:102814688 original size:11 final size:11
Alignment explanation
Indices: 102814647--102814688 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
102814637 GTCATTAATA
102814647 TTATTAT-TATT
1 TTATTATCTA-T
*
102814658 TTATTATTTAT
1 TTATTATCTAT
102814669 TTATCTATCTAT
1 TTAT-TATCTAT
102814681 TTATTATC
1 TTATTATC
102814689 CTTATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 16 0.57
12 12 0.43
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATCTAT
Found at i:102814925 original size:3 final size:3
Alignment explanation
Indices: 102814917--102814983 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
102814907 ACTCACACTT
102814917 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102814965 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
102814984 ATCTCGTCTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:102818202 original size:27 final size:25
Alignment explanation
Indices: 102818155--102818214 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 25
102818145 AAACTTGTTA
102818155 TATTTT-AAATTAACTTATATATTACT
1 TATTTTAAAATTAACTTATATA--ACT
** * *
102818181 TATTTTAAAATTATTTTTTATACCT
1 TATTTTAAAATTAACTTATATAACT
102818206 TATTTTAAA
1 TATTTTAAA
102818215 CCCATTTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 11 0.38
26 6 0.21
27 12 0.41
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTTTAAAATTAACTTATATAACT
Found at i:102818275 original size:22 final size:24
Alignment explanation
Indices: 102818250--102818302 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
102818240 TTATTATTAT
* *
102818250 TTATTTTAGT-TTTT-TTTACATA
1 TTATTTTACTCTTTTATATACATA
102818272 TTATTTTACTCCTTTTATATACATA
1 TTATTTTACT-CTTTTATATACATA
102818297 TTATTT
1 TTATTT
102818303 ATTTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
24 4 0.15
25 13 0.50
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (24 bp):
TTATTTTACTCTTTTATATACATA
Found at i:102820402 original size:19 final size:18
Alignment explanation
Indices: 102820380--102820427 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
102820370 CTTCCTTTCT
*
102820380 TTTGCATTCATTCCATACA
1 TTTGCATTCATTACAT-CA
*
102820399 TTTGCATTGTATTACATCA
1 TTTGCATT-CATTACATCA
102820418 TTTGCATTCA
1 TTTGCATTCA
102820428 ACTTTCACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 18 0.72
20 6 0.24
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATTACATCA
Found at i:102820780 original size:13 final size:13
Alignment explanation
Indices: 102820762--102820787 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102820752 GGACCCCAAT
102820762 ATCAGGCTGATAC
1 ATCAGGCTGATAC
102820775 ATCAGGCTGATAC
1 ATCAGGCTGATAC
102820788 CTCGGCACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
ATCAGGCTGATAC
Found at i:102822349 original size:10 final size:10
Alignment explanation
Indices: 102822334--102822365 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
102822324 TCAAATTCCA
102822334 AAAAAAAAAG
1 AAAAAAAAAG
102822344 AAAAAAAAAAG
1 -AAAAAAAAAG
102822355 AAAAAAAAAG
1 AAAAAAAAAG
102822365 A
1 A
102822366 TCAGGTGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:102822350 original size:12 final size:11
Alignment explanation
Indices: 102822333--102822363 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
102822323 ATCAAATTCC
102822333 AAAAAAAAAAG
1 AAAAAAAAAAG
102822344 AAAAAAAAAAG
1 AAAAAAAAAAG
102822355 AAAAAAAAA
1 AAAAAAAAA
102822364 GATCAGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:102824173 original size:64 final size:64
Alignment explanation
Indices: 102824098--102824222 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
102824088 TTCATAACAT
* * * * *
102824098 ATCTAGTTAGGAGCACTTGATTCATTTCGATCATAGCATTCTAATTATTTGACATAAGCATCAC
1 ATCTAATTAGGAACACTTGATTCATTTCGATCATAGCATCCTAATCATTTGACACAAGCATCAC
* *
102824162 ATCTAATTAGGAACATTTGATTCATTTCGATCATAGCATCCTAATCATTTGGCACAAGCAT
1 ATCTAATTAGGAACACTTGATTCATTTCGATCATAGCATCCTAATCATTTGACACAAGCAT
102824223 AGATACATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (64 bp):
ATCTAATTAGGAACACTTGATTCATTTCGATCATAGCATCCTAATCATTTGACACAAGCATCAC
Found at i:102824680 original size:132 final size:132
Alignment explanation
Indices: 102824289--102825151 Score: 1063
Period size: 132 Copynumber: 6.6 Consensus size: 132
102824279 GGTGAATTTA
* * ** * *
102824289 CAGATCTTGTCTCCCTAAAGTTGCAGTAGAACAGATCGAAGACGGTGAATCTTGTCTCCCT-AAC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
** * * * *
102824353 CAGTAGTGAAGCAGATTTAAGCCACCATCCTATATCCCTAATCAGTAGTGGAGTAGGCTAAAGAT
66 TTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
102824418 TG
131 TG
* * * * * *
102824420 CAGATCTTGTCTCCTTGAAGTTACAGTGGAACAGATCAAAGACGGCGAATCTTGTCTCCCT-AAC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
** * *
102824484 CAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
66 TTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
*
102824549 TA
131 TG
* * * **
102824551 CATATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
* * * **
102824616 TTGCAAT-AGTGCAGATTTAAGCCACCATCCTATCTCTCTAAGCAGTAGTGGAGTAAACTGAAGA
66 TTGCAGTGA-AGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGA
102824680 TTG
130 TTG
* * * *
102824683 CAAATCTTGTCTCCCTGAAATTGCAGTGGAACAGATCAAAGACGACAAATCTTGTCT-TCTTGAA
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTC-TGAA
* ** * *
102824747 GTTGTAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAATGGAGTAGGCTAAAGA
65 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGA
102824812 TTG
130 TTG
* * * * * *
102824815 TAGATCTTGTCTCCCTAAAGTCGCAATTGAGCAGATCGAAGACGACGAATCTTGTCT-TCCTGAA
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCT-CTGAA
**
102824879 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAGTAGGCTGAAGA
65 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGA
102824944 TTG
130 TTG
* * * *
102824947 TAGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGACGACGAATCTTGTCTTTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
* * *
102825012 TTGCAGTGAAGCAAATTTAAGCCACTATCCTATCTCCCTAAGTTA-TAGTGGAGTAGGCTGAAGA
66 TTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAG-CAGTAGTGGAGTAGGCTGAAGA
102825076 TTG
130 TTG
* * * * * * * *
102825079 TAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACAACAAATCCTATTTCCCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
102825144 TTGCAGTG
66 TTGCAGTG
102825152 GAATAGGTTA
Statistics
Matches: 650, Mismatches: 75, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
131 177 0.27
132 469 0.72
133 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (132 bp):
CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCTCTGAAG
TTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
TG
Found at i:102824893 original size:45 final size:45
Alignment explanation
Indices: 102824685--102825151 Score: 182
Period size: 45 Copynumber: 10.6 Consensus size: 45
102824675 GAAGATTGCA
* * *
102824685 AATCTTGTCTCCCTGAAATTGCAGTGGAA-CAGATCAAAGACGACA
1 AATCTTGTCTCCCTGAAGTTGCAGT-GAAGCAGATCGAAGACGACG
* * * ** *
102824730 AATCTTGTCTTCTTGAAGTTGTAGTGAAGCAGATTTAAG-CCAC-
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
* * * * * * * * * *
102824773 CATCCTATCTCCCT-AAGTTGTAATGGAGTAG-GCTAA-A-GATTG
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGA-CG
* * *
102824815 TAGATCTTGTCTCCCTAAAGTCGCAATTG-AGCAGATCGAAGACGACG
1 -A-ATCTTGTCTCCCTGAAGTTGC-AGTGAAGCAGATCGAAGACGACG
* ** *
102824862 AATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CCAC-
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
* * * * * * * *
102824905 CATCCTATCTCCCT-AAGTTGTAGTGGAGTAG-GCTGAAGATTGTA-G
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATC-GAAGA-CG-ACG
* *
102824950 -ATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGACGACG
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
** * ** *
102824994 AATCTTGTCTTTCTGAAGTTGCAGTGAAGCAAATTTAAG-CCAC-
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
* * * ** * * * *
102825037 TATCCTATCTCCCT-AAGTTATAGTGGAGTAG-GCTGAAGATTGTA-G
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATC-GAAGA-CG-ACG
* * *
102825082 -ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACAACA
1 AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
* * *
102825126 AATCCTATTTCCCTGAAGTTGCAGTG
1 AATCTTGTCTCCCTGAAGTTGCAGTG
102825152 GAATAGGTTA
Statistics
Matches: 302, Mismatches: 90, Indels: 60
0.67 0.20 0.13
Matches are distributed among these distances:
40 1 0.00
41 3 0.01
42 46 0.15
43 30 0.10
44 50 0.17
45 159 0.53
46 9 0.03
47 2 0.01
48 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (45 bp):
AATCTTGTCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGACG
Found at i:102834865 original size:5 final size:5
Alignment explanation
Indices: 102834855--102834879 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
102834845 GCTAATATAC
102834855 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
102834880 CCTTCTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:102835941 original size:101 final size:101
Alignment explanation
Indices: 102835731--102835947 Score: 283
Period size: 101 Copynumber: 2.1 Consensus size: 101
102835721 AATTGATGGA
* ** * * *
102835731 TAAGACCATGGTTGGACCATGACAGTGTTTATATGTAAGACCATAGCTAGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATAACAGTAATTATAAGTAAGACCATAGCTAGGCTATGACATTCTAA
* **
102835796 TGAAAAGACCATAACTGGGTTATGGCACTTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCAATACGAACG
* * *
102835832 TAAAACCATGGTTGGACCATAACAGTAATTATAAGTAAGACCATAG-TTGGACTATGACATTCTG
1 TAAGACCATGGTTGGACCATAACAGTAATTATAAGTAAGACCATAGCTAGG-CTATGACATTCTA
* *
102835896 ATGATAAGACCATAACTGGGTTATGGCAATACGAATG
65 ATGAAAAGACCATAACTGGGTTATGGCAATACGAACG
*
102835933 TAAGACCATAGTTGG
1 TAAGACCATGGTTGG
102835948 GTCATGACAA
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
100 3 0.03
101 96 0.97
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATAACAGTAATTATAAGTAAGACCATAGCTAGGCTATGACATTCTAA
TGAAAAGACCATAACTGGGTTATGGCAATACGAACG
Found at i:102835949 original size:33 final size:33
Alignment explanation
Indices: 102835866--102835980 Score: 92
Period size: 33 Copynumber: 3.5 Consensus size: 33
102835856 GTAATTATAA
** *
102835866 GTAAGACCATAGTTGGACTATGAC-ATTCTGAT
1 GTAAGACCATAGTTGGGTTATGACAATACTGAT
** *
102835898 GATAAGACCATAACTGGGTTATGGCAATAC-GAAT
1 G-TAAGACCATAGTTGGGTTATGACAATACTG-AT
* *
102835932 GTAAGACCATAGTTGGGTCATGACAATGCATG-T
1 GTAAGACCATAGTTGGGTTATGACAATAC-TGAT
* *
102835965 GTAAGATCATAATTGG
1 GTAAGACCATAGTTGG
102835981 TCTATGGCAC
Statistics
Matches: 65, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
32 1 0.02
33 57 0.88
34 6 0.09
35 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (33 bp):
GTAAGACCATAGTTGGGTTATGACAATACTGAT
Found at i:102835976 original size:66 final size:66
Alignment explanation
Indices: 102835866--102835989 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
102835856 GTAATTATAA
*
102835866 GTAAGACCATAGTTGGACTATGACATTCTGATGATAAGACCATAACTGGGT-TATGGCAATACGA
1 GTAAGACCATAGTTGGACTATGACATGCTGATGATAAGACCATAA-TGGGTCTATGGCAATACGA
102835930 AT
65 AT
* * *
102835932 GTAAGACCATAGTTGG-GTCATGACAATGCATG-TG-TAAGATCATAATTGGTCTATGGCA
1 GTAAGACCATAGTTGGACT-ATGAC-ATGC-TGATGATAAGACCATAATGGGTCTATGGCA
102835990 CAAAGACAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
65 5 0.10
66 38 0.76
67 5 0.10
68 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (66 bp):
GTAAGACCATAGTTGGACTATGACATGCTGATGATAAGACCATAATGGGTCTATGGCAATACGAA
T
Found at i:102840008 original size:19 final size:19
Alignment explanation
Indices: 102839984--102840020 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
102839974 TCAATTAAAC
* *
102839984 ATATATTTGTATTTGTCTA
1 ATATATTTATAATTGTCTA
102840003 ATATATTTATAATTGTCT
1 ATATATTTATAATTGTCT
102840021 TTTTACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (19 bp):
ATATATTTATAATTGTCTA
Found at i:102841078 original size:5 final size:5
Alignment explanation
Indices: 102841068--102841092 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
102841058 ACTGTATTGT
102841068 TTGGA TTGGA TTGGA TTGGA TTGGA
1 TTGGA TTGGA TTGGA TTGGA TTGGA
102841093 CCAACTAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
TTGGA
Found at i:102852623 original size:19 final size:19
Alignment explanation
Indices: 102852599--102852637 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
102852589 CGGATAGCTT
* *
102852599 TAACTTTGGAGAGATTTTA
1 TAACTTCGGACAGATTTTA
102852618 TAACTTCGGACAGATTTTA
1 TAACTTCGGACAGATTTTA
102852637 T
1 T
102852638 TACCATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (19 bp):
TAACTTCGGACAGATTTTA
Found at i:102854913 original size:2 final size:2
Alignment explanation
Indices: 102854906--102854934 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102854896 TGTACATGAT
102854906 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
102854935 TATATATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:102858829 original size:21 final size:21
Alignment explanation
Indices: 102858790--102858829 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102858780 ATTTAATTTT
*
102858790 TTTCTTTTATATTCGTTTAAC
1 TTTCTTTTATATTCATTTAAC
* *
102858811 TTTCTTTTTTATTTATTTA
1 TTTCTTTTATATTCATTTA
102858830 TTTTCCATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTCTTTTATATTCATTTAAC
Found at i:102859047 original size:24 final size:25
Alignment explanation
Indices: 102859020--102859074 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
102859010 TAAAGTCCCT
*
102859020 TATACGGGCCTATGA-GGCCCAAAA
1 TATACGGGCCTACGAGGGCCCAAAA
*
102859044 TATACAGGCCTACGAGGGCCCAAAA
1 TATACGGGCCTACGAGGGCCCAAAA
102859069 TATACG
1 TATACG
102859075 CCCGTGTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (25 bp):
TATACGGGCCTACGAGGGCCCAAAA
Found at i:102859782 original size:46 final size:47
Alignment explanation
Indices: 102859711--102859845 Score: 139
Period size: 47 Copynumber: 2.9 Consensus size: 47
102859701 ACATGTCACA
* * ** * * *
102859711 CACCGTTGCCATAACCCAGCCATGGTCTTACA-TGGATCACAAATCAT
1 CACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACAAAT-AT
* * *
102859758 -ACTGATGCCATATCCCAGATATGGTTTTACACAGAAGCACATATAT
1 CACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACAAATAT
* *
102859804 CACCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACA
1 CACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACA
102859846 TTATCACATC
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
46 27 0.38
47 45 0.62
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (47 bp):
CACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACAAATAT
Found at i:102859821 original size:47 final size:46
Alignment explanation
Indices: 102859761--102859852 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 46
102859751 AAATCATACT
*
102859761 GATGCCATATCCCAGATATGGTTTTACACAGAAGCACATATATCACC
1 GATGCCATATCCCAGATATGGTCTTACACAGAAGCACAT-TATCACC
* *
102859808 GATGCCATATCCCAGATATGGTCTTATACGGAAGCACATTATCAC
1 GATGCCATATCCCAGATATGGTCTTACACAGAAGCACATTATCAC
102859853 ATCATACCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 6 0.14
47 36 0.86
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACAGAAGCACATTATCACC
Found at i:102859881 original size:53 final size:53
Alignment explanation
Indices: 102859753--102859907 Score: 171
Period size: 53 Copynumber: 3.0 Consensus size: 53
102859743 TGGATCACAA
* * * *
102859753 ATCATACTGATGCCATATCCCAGATATGGTTTTACACAGAAGCACA-TAT---
1 ATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACATTATCAC
102859802 ATC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACATTATCAC
1 ATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACATTATCAC
* * * * *
102859853 ATCATACCGATGCCATAGT-CTAGCTATGGTCTTATACGGGAGCATATTGTCAC
1 ATCATACCGATGCCATA-TCCCAGATATGGTCTTATACGGAAGCACATTATCAC
102859906 AT
1 AT
102859908 GTTGCCATGG
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
47 37 0.41
48 3 0.03
49 3 0.03
51 3 0.03
53 43 0.48
54 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (53 bp):
ATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACATTATCAC
Found at i:102861623 original size:18 final size:18
Alignment explanation
Indices: 102861596--102861659 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
102861586 ACAGAGCGAG
*
102861596 AAACAGAAGAGAATGGAA
1 AAACAAAAGAGAATGGAA
**
102861614 AAACAAAAGAG--TTAAA
1 AAACAAAAGAGAATGGAA
102861630 AGAACATAAA-AGAATGGAA
1 A-AACA-AAAGAGAATGGAA
102861649 AAACAAAAGAG
1 AAACAAAAGAG
102861660 TTAAAAGAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
16 4 0.11
17 9 0.25
18 19 0.53
19 4 0.11
ACGTcount: A:0.66, C:0.06, G:0.20, T:0.08
Consensus pattern (18 bp):
AAACAAAAGAGAATGGAA
Found at i:102861644 original size:35 final size:35
Alignment explanation
Indices: 102861605--102861678 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
102861595 GAAACAGAAG
102861605 AGAATGGAAAAACAAAAGAGTTAAAAGAACATAAA
1 AGAATGGAAAAACAAAAGAGTTAAAAGAACATAAA
102861640 AGAATGGAAAAACAAAAGAGTTAAAAGAACATAAA
1 AGAATGGAAAAACAAAAGAGTTAAAAGAACATAAA
102861675 AGAA
1 AGAA
102861679 AAAAAATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.66, C:0.05, G:0.18, T:0.11
Consensus pattern (35 bp):
AGAATGGAAAAACAAAAGAGTTAAAAGAACATAAA
Found at i:102864488 original size:46 final size:46
Alignment explanation
Indices: 102864421--102864637 Score: 308
Period size: 46 Copynumber: 4.7 Consensus size: 46
102864411 TGGCAACCTG
*
102864421 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
102864467 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
102864513 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * **
102864559 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * * *
102864605 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
102864638 TCACGTCGAA
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:102864616 original size:138 final size:130
Alignment explanation
Indices: 102864372--102864637 Score: 361
Period size: 138 Copynumber: 2.0 Consensus size: 130
102864362 AGTGTGCTCT
*
102864372 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * ** * * *
102864437 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
* *
102864502 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
*
102864567 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACC
102864632 ATGGCA
123 ATGGCA
102864638 TCACGTCGAA
Statistics
Matches: 117, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
138 67 0.57
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:102864943 original size:23 final size:25
Alignment explanation
Indices: 102864898--102864944 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
102864888 AATAAATATA
*
102864898 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
102864923 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
102864945 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:102867612 original size:40 final size:40
Alignment explanation
Indices: 102867557--102867744 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
102867547 GAAAAAAAAA
102867557 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
102867597 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
102867637 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
102867677 TATAACCGGGTTAAGTCCCGAAGGTATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
102867717 TATAATCGGGTTAAGTCCCAAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
102867745 TGTACTGGTT
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:102867778 original size:80 final size:80
Alignment explanation
Indices: 102867557--102867784 Score: 249
Period size: 80 Copynumber: 2.9 Consensus size: 80
102867547 GAAAAAAAAA
* * * * * ** * *
102867557 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGT
102867622 ATTCGTGCGGGTTAC
66 ATTCGTGCGGGTTAC
* * * * ** *
102867637 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGT
*
102867702 ATTCGTGCGGGTTAT
66 ATTCGTGCGGGTTAC
* * * * * *
102867717 TATAATCGGGTTAAGTCCCAAAGGCATTTGTACTGGTTGTTACATCCGAGCCAAATTCCGAAGGT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGT
102867782 ATT
66 ATT
102867785 TATGTTTGGA
Statistics
Matches: 132, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 132 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
TATAACCGGGTTAAGTCCCAAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGT
ATTCGTGCGGGTTAC
Found at i:102867778 original size:120 final size:120
Alignment explanation
Indices: 102867557--102867780 Score: 304
Period size: 120 Copynumber: 1.9 Consensus size: 120
102867547 GAAAAAAAAA
*
102867557 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCAAAGGC
* * * ** *
102867622 ATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
66 ATTCGTACGGGTTACTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTAT
* * *
102867677 TATAACCGGGTTAAGTCCCGAAGGTATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCAAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCAAAGGC
* * ** * *
102867742 ATTTGTACTGGTTGTTACATCCGAGCCAAATTCCGAAGG
66 ATTCGTACGGGTTACTACAACCGAGCCAAATCCCGAAGG
102867781 TATTTATGTT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
120 88 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCAAAGGC
ATTCGTACGGGTTACTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTAT
Found at i:102876055 original size:21 final size:22
Alignment explanation
Indices: 102876029--102876073 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
102876019 CTTTTGTTTG
102876029 ATAAATT-A-AATGCAAAACTAA
1 ATAAATTCACAAT-CAAAACTAA
102876050 ATAAATTCACAATCAAAACTAA
1 ATAAATTCACAATCAAAACTAA
102876072 AT
1 AT
102876074 TTATTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.32
22 12 0.55
23 3 0.14
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.24
Consensus pattern (22 bp):
ATAAATTCACAATCAAAACTAA
Found at i:102884293 original size:6 final size:7
Alignment explanation
Indices: 102884274--102884302 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
102884264 TTTTTACTAT
102884274 TTAAAAA
1 TTAAAAA
102884281 TTAAAAA
1 TTAAAAA
102884288 TTAAAAA
1 TTAAAAA
102884295 TTAAAAA
1 TTAAAAA
102884302 T
1 T
102884303 ATATTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TTAAAAA
Found at i:102886325 original size:55 final size:55
Alignment explanation
Indices: 102886262--102886369 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 55
102886252 TAAAATTATG
*
102886262 AAAATATAAATTATTAAAAT-A-ATGAAATAACATTTTGAGAATATTTTAGTTTCAT
1 AAAATATAAATTA-TAAAATGAGA-GAAATAACATTTTGACAATATTTTAGTTTCAT
* *
102886317 AAAATATAAATTATAAAATGAGAGAAATTATATTTTGACAATATTTTAGTTTC
1 AAAATATAAATTATAAAATGAGAGAAATAACATTTTGACAATATTTTAGTTTC
102886370 GTCCCTGTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
54 6 0.12
55 41 0.85
56 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (55 bp):
AAAATATAAATTATAAAATGAGAGAAATAACATTTTGACAATATTTTAGTTTCAT
Found at i:102888610 original size:19 final size:21
Alignment explanation
Indices: 102888574--102888615 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
102888564 TTCCTTGTAT
102888574 AATTCAAAGGAAAAAC-TTGAA
1 AATTCAAAGG-AAAACTTTGAA
102888595 AATTCAAAGG-AAACTTTGAA
1 AATTCAAAGGAAAACTTTGAA
102888615 A
1 A
102888616 GAGAAGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (21 bp):
AATTCAAAGGAAAACTTTGAA
Found at i:102901241 original size:21 final size:21
Alignment explanation
Indices: 102901211--102901256 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
102901201 TTTTTTAAAA
* *
102901211 AATTATTTAATCAAATAATTT
1 AATTAATTAATCAAATAAATT
* *
102901232 AATTAATTAATTAACTAAATT
1 AATTAATTAATCAAATAAATT
102901253 AATT
1 AATT
102901257 TCTCAATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTAATTAATCAAATAAATT
Found at i:102901242 original size:13 final size:13
Alignment explanation
Indices: 102901204--102901257 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
102901194 TTTTCTATTT
*
102901204 TTTAAAAAATT-A
1 TTTAATAAATTAA
102901216 TTTAATCAAA-TAA
1 TTTAAT-AAATTAA
*
102901229 TTTAATTAATTAA
1 TTTAATAAATTAA
102901242 -TTAACTAAATTAA
1 TTTAA-TAAATTAA
102901255 TTT
1 TTT
102901258 CTCAATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
12 12 0.35
13 20 0.59
14 2 0.06
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTAATAAATTAA
Found at i:102901267 original size:17 final size:17
Alignment explanation
Indices: 102901247--102901279 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102901237 ATTAATTAAC
102901247 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
102901264 TAAATTATTTTCTCAA
1 TAAATTAATTTCTCAA
102901280 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:102903734 original size:15 final size:15
Alignment explanation
Indices: 102903711--102903746 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
102903701 ATTTAAATAT
*
102903711 ATCATAAACCATTCA
1 ATCACAAACCATTCA
102903726 ATCACAAACCATTCA
1 ATCACAAACCATTCA
102903741 ATCACA
1 ATCACA
102903747 TACACTTCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (15 bp):
ATCACAAACCATTCA
Found at i:102904949 original size:21 final size:20
Alignment explanation
Indices: 102904920--102904964 Score: 81
Period size: 21 Copynumber: 2.2 Consensus size: 20
102904910 TCAATGTTAC
102904920 CATAATATACATTGCATTTG
1 CATAATATACATTGCATTTG
102904940 CATATATATACATTGCATTTG
1 CATA-ATATACATTGCATTTG
102904961 CATA
1 CATA
102904965 CTTACCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (20 bp):
CATAATATACATTGCATTTG
Found at i:102906859 original size:70 final size:70
Alignment explanation
Indices: 102906782--102906921 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
102906772 AAACAAATTA
102906782 TTTTATTAATAAAATAGGTCAACAAGTATACGGTTAAAATAATCTTATAATTGGTATTTGGACAT
1 TTTTATTAATAAAATAGGTCAACAAGTATACGGTTAAAATAATCTTATAATTGGTATTTGGACAT
102906847 ACTCC
66 ACTCC
102906852 TTTTATTAATAAAATAGGTCAACAAGTATACGGTTAAAATAATCTTATAATTGGTATTTGGACAT
1 TTTTATTAATAAAATAGGTCAACAAGTATACGGTTAAAATAATCTTATAATTGGTATTTGGACAT
102906917 ACTCC
66 ACTCC
102906922 AACAGTCAGG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (70 bp):
TTTTATTAATAAAATAGGTCAACAAGTATACGGTTAAAATAATCTTATAATTGGTATTTGGACAT
ACTCC
Found at i:102912123 original size:44 final size:44
Alignment explanation
Indices: 102912059--102912230 Score: 203
Period size: 43 Copynumber: 4.0 Consensus size: 44
102912049 CATAGGATTC
** *
102912059 CGATATTTGATTT-TGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACATTGGCAT
* * *
102912102 CGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATT-TGATTTACATGTAAGACCACGTCTGGGACATTGGCAT
* *
102912146 C-ATATTTGATTT-CATGTAAGACC-CTGTTTGGGACAATGGCAT
1 CGATATTTGATTTACATGTAAGACCAC-GTCTGGGACATTGGCAT
*
102912188 CGATATTTGA-TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACATTGGCAT
102912231 TGTATGAGCT
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
42 30 0.27
43 49 0.45
44 31 0.28
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
CGATATTTGATTTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:102916549 original size:12 final size:13
Alignment explanation
Indices: 102916532--102916560 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
102916522 ATATATATTT
102916532 ATACGGGTT-AAA
1 ATACGGGTTGAAA
102916544 ATACGGGTTGAAA
1 ATACGGGTTGAAA
102916557 ATAC
1 ATAC
102916561 CTGTGACGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (13 bp):
ATACGGGTTGAAA
Found at i:102916842 original size:14 final size:14
Alignment explanation
Indices: 102916805--102916843 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
102916795 AGAAAAGAGG
*
102916805 GAAAGAAAGGAGAA
1 GAAAGAAAGAAGAA
102916819 GAAA-AGAAGAAGAA
1 GAAAGA-AAGAAGAA
102916833 GAAAGAAAGAA
1 GAAAGAAAGAA
102916844 AAAAAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 1 0.05
14 20 0.91
15 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
GAAAGAAAGAAGAA
Found at i:102917096 original size:80 final size:75
Alignment explanation
Indices: 102917012--102917250 Score: 238
Period size: 80 Copynumber: 3.2 Consensus size: 75
102917002 ATAATTGTTT
* * * *
102917012 TAAAATTGTTTTGTTAGTAATTTAGGATTATATTATAAATTGTT-GTGTTTAGTTTAGTATGTTG
1 TAAAATTATTTTGTTAGTAATTTAGGATTAGATTATAAATTGTTAGTATTT--TGT-GT-T-TTG
102917076 TGATTTTTTATTAATG
61 TGA-TTTTTATTAATG
* *
102917092 TAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTATTTTGTGTTTTGTGATT
1 TAAAATTATTTTGTTAGTAATTTAGGATTAGATTATAAATTGTTAGTATTTTGTGTTTTGTGATT
102917157 TTTATTAATG
66 TTTATTAATG
* * * * ** *
102917167 TAAAATTATTTTGTTAATTATTT-TG-TTAG-TAATTTA-TGTTAGTGTTTTGTGTTTTGTGATT
1 TAAAATTATTTTGTTAGTAATTTAGGATTAGATTATAAATTGTTAGTATTTTGTGTTTTGTGA--
*
102917228 TTTTTAGTAATG
64 TTTTTATTAATG
102917240 T-AAATTATTTT
1 TAAAATTATTTT
102917251 TAAAAAATAT
Statistics
Matches: 143, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
71 22 0.15
72 14 0.10
73 16 0.11
74 2 0.01
75 33 0.23
76 6 0.04
77 1 0.01
78 2 0.01
79 2 0.01
80 40 0.28
81 5 0.03
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (75 bp):
TAAAATTATTTTGTTAGTAATTTAGGATTAGATTATAAATTGTTAGTATTTTGTGTTTTGTGATT
TTTATTAATG
Found at i:102917109 original size:40 final size:39
Alignment explanation
Indices: 102917065--102917182 Score: 104
Period size: 40 Copynumber: 3.1 Consensus size: 39
102917055 TGTGTTTAGT
102917065 TTAGTATGTTGTGATTTTTTATTAATGTAAAATTATTTTG
1 TTAGTAT-TTGTGATTTTTTATTAATGTAAAATTATTTTG
* ** * * *
102917105 TTAGTAATTTATGATTAGGTTATAAATTGT--TAGTATTTTG
1 TTAGT-ATTTGTGATT-TTTTATTAA-TGTAAAATTATTTTG
102917145 -T-GT-TTTGTGA-TTTTTATTAATGTAAAATTATTTTG
1 TTAGTATTTGTGATTTTTTATTAATGTAAAATTATTTTG
102917180 TTA
1 TTA
102917183 ATTATTTTGT
Statistics
Matches: 59, Mismatches: 12, Indels: 17
0.67 0.14 0.19
Matches are distributed among these distances:
33 3 0.05
34 6 0.10
35 9 0.15
36 7 0.12
38 2 0.03
39 1 0.02
40 20 0.34
41 8 0.14
42 3 0.05
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (39 bp):
TTAGTATTTGTGATTTTTTATTAATGTAAAATTATTTTG
Found at i:102917187 original size:12 final size:12
Alignment explanation
Indices: 102917170--102917194 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102917160 ATTAATGTAA
102917170 AATTATTTTGTT
1 AATTATTTTGTT
102917182 AATTATTTTGTT
1 AATTATTTTGTT
102917194 A
1 A
102917195 GTAATTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
AATTATTTTGTT
Found at i:102917278 original size:71 final size:70
Alignment explanation
Indices: 102917073--102917281 Score: 176
Period size: 71 Copynumber: 2.9 Consensus size: 70
102917063 GTTTAGTATG
* * * **
102917073 TTGTGATTTTTTATTAATGTAAAATTATTTTGTTAGTAAT-TTATGATTAGGTTATAAATTGTTA
1 TTGTGA-TTTTTAGTAATGTAAAATTATTTTG-TA-AAATATTTTG-TTA-G-TAT-TTTTGTTA
102917137 GTATTTTGTGTT
59 GTATTTTGTGTT
* * * * *
102917149 TTGTGATTTTTATTAATGTAAAATTATTTTGTTAATTATTTTGTTAGTAATTTATGTTAGTGTTT
1 TTGTGATTTTTAGTAATGTAAAATTATTTTGTAAAATATTTTGTTAGT-ATTTTTGTTAGTATTT
102917214 TGTGTT
65 TGTGTT
102917220 TTGTGATTTTTTTAGTAATGT-AAATTATTTT-TAAAAAATATTTT-TATAGT-TTTTTGTTAGT
1 TTGTGA--TTTTTAGTAATGTAAAATTATTTTGT--AAAATATTTTGT-TAGTATTTTTGTTAGT
102917281 A
61 A
102917282 ATTTATGATT
Statistics
Matches: 113, Mismatches: 13, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
71 34 0.30
72 14 0.12
73 29 0.26
74 5 0.04
75 25 0.22
76 6 0.05
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.58
Consensus pattern (70 bp):
TTGTGATTTTTAGTAATGTAAAATTATTTTGTAAAATATTTTGTTAGTATTTTTGTTAGTATTTT
GTGTT
Found at i:102917429 original size:103 final size:100
Alignment explanation
Indices: 102917210--102917454 Score: 312
Period size: 103 Copynumber: 2.4 Consensus size: 100
102917200 TTATGTTAGT
* * *
102917210 GTTTTGTGTTTTGTGATTTTTTTAGTAATGTAAATTATTTTTAAAAAATATTTTTATAGTTTTTT
1 GTTTAGTGTTTTGTGA-TTTTTTAGTAATGT--A--ATTTTAAAAAAATAATTTTATAGTTTTTT
*
102917275 GTTAGTAATTTATGATTAGTTTATAAATTGTTAGTATTTA
61 GTTAGTAATTTATAATTAGTTTATAAATTGTTAGTATTTA
* *
102917315 ATTTAGGGTTTTGTGATTTTTTAGTAATGTAA-TTTAAAAATAATAATTTTATAGTTATTTTGTT
1 GTTTAGTGTTTTGTGATTTTTTAGTAATGTAATTTTAAAAA-AATAATTTTATAGTT-TTTTGTT
* *
102917379 AGTAATTTATAATTAGGTTATCTAAATTGTTAGTGTTTA
64 AGTAATTTATAATTA-GTT-TATAAATTGTTAGTATTTA
*
102917418 GTTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTT
1 GTTTAGTGTTTTGTGATTTTTTAGTAATGT-AATTTT
102917455 TTATAATCTA
Statistics
Matches: 123, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
99 7 0.06
100 15 0.12
101 21 0.17
102 4 0.03
103 44 0.36
104 16 0.13
105 16 0.13
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.56
Consensus pattern (100 bp):
GTTTAGTGTTTTGTGATTTTTTAGTAATGTAATTTTAAAAAAATAATTTTATAGTTTTTTGTTAG
TAATTTATAATTAGTTTATAAATTGTTAGTATTTA
Found at i:102919341 original size:33 final size:33
Alignment explanation
Indices: 102919292--102919363 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
102919282 TACCACCTCA
*
102919292 GTACTCCAGTCATCCCGACCCGTATCCATC-GCC
1 GTACTCCACTCATCCCGACCCGTATCCA-CAGCC
* *
102919325 GTACTCCACTCCTCCCGGCCCGTATCCACAGCC
1 GTACTCCACTCATCCCGACCCGTATCCACAGCC
102919358 GTACTC
1 GTACTC
102919364 TACTACTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 1 0.03
33 34 0.97
ACGTcount: A:0.17, C:0.47, G:0.15, T:0.21
Consensus pattern (33 bp):
GTACTCCACTCATCCCGACCCGTATCCACAGCC
Found at i:102919733 original size:78 final size:77
Alignment explanation
Indices: 102919561--102919880 Score: 408
Period size: 78 Copynumber: 4.1 Consensus size: 77
102919551 TAATTTAAAT
* * *** * **
102919561 AACTTTATATTTATATAATGACTTTTTTTTCATTTTAGTTATTAATTTTAGG-GGTTTTTTTGCA
1 AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAGTTATTAATTTTAGGTTTTTTTTTTGCA
102919625 ATTTAAATAGTC
66 ATTTAAATAGTC
*
102919637 AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAATTATTAATTTTAAGGTTTTTTTTTTGC
1 AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAGTTATTAATTTT-AGGTTTTTTTTTTGC
*
102919702 AATTTACATAGTC
65 AATTTAAATAGTC
* * * *
102919715 AACTTTGTATTTAGGTAATGACTTTTTTGCCATTTCAGTTATTAACTTTAGGGTCTTTTTTTTGC
1 AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAGTTATTAATTTTA-GGTTTTTTTTTTGC
102919780 AATTTAAATAGTC
65 AATTTAAATAGTC
* * ** * * *
102919793 AATTTTTTATTTATGTAATGACTTTTTCATCATTTCAGTTATTAATTTTTGGGTTTTTTTTTGTA
1 AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAGTTATTAATTTTAGGTTTTTTTTTTGCA
* *
102919858 ATTTAAATAATA
66 ATTTAAATAGTC
102919870 AACTTTGTATT
1 AACTTTGTATT
102919881 ATTTACGTAA
Statistics
Matches: 210, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
76 42 0.20
77 35 0.17
78 133 0.63
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (77 bp):
AACTTTGTATTTATGTAATGACTTTTTCGCCATTTCAGTTATTAATTTTAGGTTTTTTTTTTGCA
ATTTAAATAGTC
Found at i:102927315 original size:18 final size:18
Alignment explanation
Indices: 102927292--102927328 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
102927282 GTCTGAAACC
102927292 TTATTTTGATAAAATTGA
1 TTATTTTGATAAAATTGA
102927310 TTATTTTGATAAAATTGA
1 TTATTTTGATAAAATTGA
102927328 T
1 T
102927329 AGCAGGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
TTATTTTGATAAAATTGA
Found at i:102928559 original size:17 final size:17
Alignment explanation
Indices: 102928537--102928578 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
102928527 TGGTTATTAA
102928537 TCGTTTGTTT-TCTTGAT
1 TCGTTTGTTTGTCTTG-T
102928554 TCGTTT-TTTGTCTTGT
1 TCGTTTGTTTGTCTTGT
*
102928570 TCTTTTGTT
1 TCGTTTGTT
102928579 AATTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.02, C:0.12, G:0.17, T:0.69
Consensus pattern (17 bp):
TCGTTTGTTTGTCTTGT
Found at i:102929262 original size:21 final size:21
Alignment explanation
Indices: 102929236--102929277 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
102929226 AATTTTTTTA
*
102929236 CCTGAACCTCGAACCTTGAAC
1 CCTGAACCTCAAACCTTGAAC
*
102929257 CCTGAACCTTAAACCTTGAAC
1 CCTGAACCTCAAACCTTGAAC
102929278 TTCGATGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.12, T:0.21
Consensus pattern (21 bp):
CCTGAACCTCAAACCTTGAAC
Found at i:102929271 original size:7 final size:7
Alignment explanation
Indices: 102929238--102929277 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
102929228 TTTTTTTACC
102929238 TGAACCT
1 TGAACCT
*
102929245 CGAACCT
1 TGAACCT
*
102929252 TGAACCC
1 TGAACCT
102929259 TGAACCT
1 TGAACCT
*
102929266 TAAACCT
1 TGAACCT
102929273 TGAAC
1 TGAAC
102929278 TTCGATGTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.23
Consensus pattern (7 bp):
TGAACCT
Found at i:102929397 original size:21 final size:20
Alignment explanation
Indices: 102929347--102929408 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
102929337 TAGGTTACGT
* *
102929347 GTTTGGAGTTCAAGGTTTGT
1 GTTTAGAGTTCAAGGTTTGG
*
102929367 GTTTAAAGTTCAAAGGTTTGAG
1 GTTTAGAGTTC-AAGGTTTG-G
* *
102929389 GTTT-GAGTTTAGGGTTTGG
1 GTTTAGAGTTCAAGGTTTGG
102929408 G
1 G
102929409 GCACGGGCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
19 2 0.06
20 16 0.47
21 12 0.35
22 4 0.12
ACGTcount: A:0.19, C:0.03, G:0.35, T:0.42
Consensus pattern (20 bp):
GTTTAGAGTTCAAGGTTTGG
Found at i:102932366 original size:28 final size:29
Alignment explanation
Indices: 102932325--102932380 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
102932315 AATAATTTTA
* *
102932325 TTAATTATTGAAAATTTTAAATATATATT
1 TTAATTATTAAAAATATTAAATATATATT
*
102932354 TTAATT-TTAAAAATATTATATATATAT
1 TTAATTATTAAAAATATTAAATATATAT
102932381 ATATATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TTAATTATTAAAAATATTAAATATATATT
Found at i:102932388 original size:28 final size:28
Alignment explanation
Indices: 102932326--102932390 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
102932316 ATAATTTTAT
* * *
102932326 TAATTATTGAAAATTTTAAATATATATTT
1 TAATT-TTAAAAATATTAAATATATATTA
*
102932355 TAATTTTAAAAATATTATATATATATATA
1 TAATTTTAAAAATATTAAATATATAT-TA
*
102932384 TATTTTT
1 TAATTTT
102932391 TTTCATTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
TAATTTTAAAAATATTAAATATATATTA
Found at i:102932848 original size:16 final size:16
Alignment explanation
Indices: 102932829--102932884 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 16
102932819 ATTTTTATAT
102932829 ATAAAAATATTTACAC
1 ATAAAAATATTTACAC
*
102932845 ATAATATAAT-TTAGTACAT
1 ATAA-A-AATATT--TACAC
102932864 ATATAAAATATTTACAC
1 ATA-AAAATATTTACAC
102932881 ATAA
1 ATAA
102932885 CATATTTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 5 0.16
17 10 0.31
18 6 0.19
19 10 0.31
20 1 0.03
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.36
Consensus pattern (16 bp):
ATAAAAATATTTACAC
Found at i:102932877 original size:36 final size:37
Alignment explanation
Indices: 102932825--102932895 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
102932815 TTCTATTTTT
*
102932825 ATATATAAAAATATTTACACATAATATAATTTAGTAC
1 ATATATAAAAATATTTACACATAACATAATTTAGTAC
*
102932862 ATATAT-AAAATATTTACACATAACATATTTTAGT
1 ATATATAAAAATATTTACACATAACATAATTTAGT
102932896 GTAGTATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 26 0.81
37 6 0.19
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (37 bp):
ATATATAAAAATATTTACACATAACATAATTTAGTAC
Found at i:102932909 original size:36 final size:35
Alignment explanation
Indices: 102932827--102932909 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 35
102932817 CTATTTTTAT
* *
102932827 ATATAAAAATATTTACACATAATATAATTTAGTAC
1 ATATATAAATATTTACACATAACATAATTTAGTAC
* **
102932862 ATATATAAAATATTTACACATAACATATTTTAGTGT
1 ATATAT-AAATATTTACACATAACATAATTTAGTAC
102932898 AGTATATAAATA
1 A-TATATAAATA
102932910 AATTGTTCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
35 5 0.12
36 31 0.76
37 5 0.12
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (35 bp):
ATATATAAATATTTACACATAACATAATTTAGTAC
Found at i:102933532 original size:67 final size:67
Alignment explanation
Indices: 102933429--102933567 Score: 163
Period size: 67 Copynumber: 2.1 Consensus size: 67
102933419 AATCGTTATT
* *** * * * *
102933429 CATTTATAAAATCTTAGTATTGTATTAGAATTACCATAATAATTGTACT-ACAATCACCATTCAT
1 CATTTATAAAATCTTAATACAATATCAAAATCACCATAATAATTATACTGA-AATCACCATTCAT
102933493 TTA
65 TTA
* * *
102933496 CATTTATAAAATCTTAATACAATATCAAAATCACCATAATAATTATATTGAAATCGCCTTTCATT
1 CATTTATAAAATCTTAATACAATATCAAAATCACCATAATAATTATACTGAAATCACCATTCATT
102933561 TA
66 TA
102933563 CATTT
1 CATTT
102933568 GCAAAATTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 59 0.98
68 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (67 bp):
CATTTATAAAATCTTAATACAATATCAAAATCACCATAATAATTATACTGAAATCACCATTCATT
TA
Found at i:102934532 original size:9 final size:9
Alignment explanation
Indices: 102934518--102934595 Score: 51
Period size: 9 Copynumber: 9.3 Consensus size: 9
102934508 TTCGGGAACA
102934518 AAGAAGGAG
1 AAGAAGGAG
102934527 AAGAA-GA-
1 AAGAAGGAG
*
102934534 AA-AA-GAA
1 AAGAAGGAG
*
102934541 AAGAATGAG
1 AAGAAGGAG
102934550 AAGAAGGA-
1 AAGAAGGAG
102934558 AAGAA-GAG
1 AAGAAGGAG
* *
102934566 AAGAAGAAT
1 AAGAAGGAG
*
102934575 AAGGAGGAG
1 AAGAAGGAG
* *
102934584 GAGGAGGAG
1 AAGAAGGAG
102934593 AAG
1 AAG
102934596 GAGGCGGCAC
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
6 4 0.07
7 6 0.11
8 14 0.25
9 31 0.56
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (9 bp):
AAGAAGGAG
Found at i:102935086 original size:17 final size:17
Alignment explanation
Indices: 102935056--102935137 Score: 53
Period size: 17 Copynumber: 5.0 Consensus size: 17
102935046 CTTTTACAAA
* *
102935056 AAAATAGTATAAAAAAT
1 AAAATACTAAAAAAAAT
102935073 AAAATACT--AAAAAAT
1 AAAATACTAAAAAAAAT
*** *
102935088 ATGTTAAT-AAAAAAAT
1 AAAATACTAAAAAAAAT
* * *
102935104 AAAATACGAGAAGAAAT
1 AAAATACTAAAAAAAAT
*
102935121 AAAATACGAAAAAAAAT
1 AAAATACTAAAAAAAAT
102935138 TTTGGGGAAA
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
15 11 0.22
16 10 0.20
17 28 0.57
ACGTcount: A:0.70, C:0.04, G:0.07, T:0.20
Consensus pattern (17 bp):
AAAATACTAAAAAAAAT
Found at i:102935544 original size:13 final size:13
Alignment explanation
Indices: 102935514--102935550 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
102935504 ATTTTTTGCT
102935514 AAAATAATATA-A
1 AAAATAATATATA
*
102935526 AAAATAATATATG
1 AAAATAATATATA
102935539 AAAATAATATAT
1 AAAATAATATAT
102935551 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AAAATAATATATA
Found at i:102935614 original size:296 final size:298
Alignment explanation
Indices: 102935145--102936161 Score: 1579
Period size: 296 Copynumber: 3.5 Consensus size: 298
102935135 AATTTTGGGG
* *
102935145 AAAGTGCCAAAGTCAGAGTTATTTATTAAATTAATATAAAAA-ACTTAAATAATACATTTGAAAC
1 AAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAACACTTAAATAATACATTTGAAAC
*
102935209 ATTTTTTGCTAAAATAATAT-AAAAATAAAATACAAAAATAATATATTTTAAAAAATAATATACG
66 ATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
* *
102935273 AAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATAT-AAATAATAC
131 AAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAAAAC
* * *
102935337 TTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATATG-AAATATTA
196 TTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATA
* *
102935401 TATTTTAAAAAATAAAATCCGAAAATAAAAAAATACGAA
261 TATTTTAAAAAATAAGATACGAAAATAAAAAAATA-GAA
*
102935440 CAAAGTGCCAAAGTCAGGGTTATTTATTAAATTAATAT-AAAA-ACTTAAATAATACATTTGAAA
1 -AAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAACACTTAAATAATACATTTGAAA
* *
102935503 CATTTTTTGCTAAAATAATATAAAAAATAATATATGAAAATAATATATTTTAAAAAATAATATAC
65 CATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATAC
* *
102935568 GAAAATAAAAAATACGAATAAAGTGTTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAACA
130 GAAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAAAA
* * *
102935633 CTTAAAGAATATATTTGAAACATTATTTACTAAAATAATATAAAGAAATAAAATACGAAAATAAT
195 CTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAAT
*
102935698 ATATTTTAAAAAATAAGATGCGAAAAT----AAA-A-AA
260 ATATTTTAAAAAATAAGATACGAAAATAAAAAAATAGAA
* *
102935731 AAAGTACCAAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTTAAATAATACATTTGAAA
1 AAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAACACTTAAATAATACATTTGAAA
102935796 CATTTTTTGCTAAAATAATATAAAAAAATAAAATACGAAAATAATATATTTT-AAAAATAATATA
65 CATTTTTTGCTAAAATAATAT-AAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATA
*
102935860 CGAAAATAAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATT-AAAAAATATAAAAAAAA
129 CGAAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAAA
* *
102935924 ACTTAAATAATACATTTGAAACATTATGTACTGAAATAATATAATGAAATAAAATACGAAAATAA
194 ACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAA
*
102935989 TATCTTTTAAAAAATAAGATACGAAAATAAAAAAATATGAA
259 TATATTTTAAAAAATAAGATACGAAAATAAAAAAATA-GAA
* * *
102936030 GAAAGTGCCAAAATTAGGGTTATTTATTAAGTTAATATAAAAAACACTTAAATTATACATTTGAA
1 -AAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAACACTTAAATAATACATTTGAA
102936095 ACATTTTTTGC-----T-ATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATA
64 ACATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATA
102936154 CGAAAATA
129 CGAAAATA
102936162 TTTTACTTAT
Statistics
Matches: 671, Mismatches: 34, Indels: 34
0.91 0.05 0.05
Matches are distributed among these distances:
290 35 0.05
291 2 0.00
292 106 0.16
293 130 0.19
294 55 0.08
295 47 0.07
296 134 0.20
297 59 0.09
298 31 0.05
299 2 0.00
300 70 0.10
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.30
Consensus pattern (298 bp):
AAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAACACTTAAATAATACATTTGAAAC
ATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
AAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAAAAC
TTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATA
TATTTTAAAAAATAAGATACGAAAATAAAAAAATAGAA
Found at i:102935865 original size:13 final size:13
Alignment explanation
Indices: 102935807--102935868 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
102935797 ATTTTTTGCT
*
102935807 AAAATAATATAAA
1 AAAATAATATACA
* *
102935820 AAAATAAAATACG
1 AAAATAATATACA
*
102935833 AAAATAATATATTTTA
1 AAAATAATATA---CA
*
102935849 AAAATAATATACG
1 AAAATAATATACA
102935862 AAAATAA
1 AAAATAA
102935869 AAAATACAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
13 27 0.71
16 11 0.29
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:102938120 original size:72 final size:72
Alignment explanation
Indices: 102938034--102938178 Score: 211
Period size: 72 Copynumber: 2.0 Consensus size: 72
102938024 AGTCCAAGCA
* * *
102938034 ATCGCATTCACATTC-GACTGATACTTCTTATCATCCGGATTTGGCGGGCAATGACTATTTCCCA
1 ATCGCATTCACATTCAG-CTGATACTTCTTATCATCCAGATTTGGCGAGCAATAACTATTTCCCA
102938098 GGCTCGTC
65 GGCTCGTC
** * *
102938106 ATCGCATTCACATTCAGCTGATACTTCTTATCATCCAGATTTTTCGAGTAATAACTATTTCCCGG
1 ATCGCATTCACATTCAGCTGATACTTCTTATCATCCAGATTTGGCGAGCAATAACTATTTCCCAG
102938171 GCTCGTC
66 GCTCGTC
102938178 A
1 A
102938179 GGGGGCAGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 64 0.98
73 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.34
Consensus pattern (72 bp):
ATCGCATTCACATTCAGCTGATACTTCTTATCATCCAGATTTGGCGAGCAATAACTATTTCCCAG
GCTCGTC
Found at i:102943456 original size:24 final size:25
Alignment explanation
Indices: 102943429--102943486 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
102943419 AATAATAATA
*
102943429 ACTAACAATAAT-TA-GGGTTTTTTT
1 ACTAACAATAATATATGGG-GTTTTT
102943453 ACTAACAATAATAATATGGGGTTTTT
1 ACTAACAATAAT-ATATGGGGTTTTT
102943479 ACTAACAA
1 ACTAACAA
102943487 CAAAAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 12 0.40
26 15 0.50
27 3 0.10
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (25 bp):
ACTAACAATAATATATGGGGTTTTT
Found at i:102943594 original size:16 final size:17
Alignment explanation
Indices: 102943571--102943613 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
102943561 AAAAGTTATA
*
102943571 CCTTCTTTTTT-CTTTT
1 CCTTCTTTTTTCCTTCT
*
102943587 CTTTCTTTTTTCCTTCT
1 CCTTCTTTTTTCCTTCT
102943604 CCTTCTTTTT
1 CCTTCTTTTT
102943614 CTTCTATTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (17 bp):
CCTTCTTTTTTCCTTCT
Found at i:102943617 original size:15 final size:16
Alignment explanation
Indices: 102943571--102943618 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
102943561 AAAAGTTATA
*
102943571 CCTTCTTTTTTCTTTT
1 CCTTCTTTTTTCTTCT
*
102943587 CTTTCTTTTTTCCTTCT
1 CCTTCTTTTTT-CTTCT
102943604 CCTTC-TTTTTCTTCT
1 CCTTCTTTTTTCTTCT
102943619 ATTCTCCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 5 0.18
16 15 0.54
17 8 0.29
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
CCTTCTTTTTTCTTCT
Found at i:102943641 original size:20 final size:20
Alignment explanation
Indices: 102943600--102943641 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
102943590 TCTTTTTTCC
**
102943600 TTCTCCTTCTTTTTCTTCTA
1 TTCTCCTTCTTTCCCTTCTA
102943620 TTCTCCTTTCTTTCCCTT-TA
1 TTCTCC-TTCTTTCCCTTCTA
102943640 TT
1 TT
102943642 TTCTTCTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (20 bp):
TTCTCCTTCTTTCCCTTCTA
Done.