Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 323 of 332
Found at i:106125646 original size:3 final size:3
Alignment explanation
Indices: 106125638--106125704 Score: 59
Period size: 3 Copynumber: 22.7 Consensus size: 3
106125628 AAAAATATAC
*
106125638 ATA ATA ATA TTA A-A ATA A-A ATA ATA AGTA ATA ATA ATGA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA AT-A ATA ATA
* * *
106125682 ATA GTT ATA ATA ATA ATT ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
106125705 GATATACGAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 6 0.12
3 40 0.78
4 5 0.10
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:106125704 original size:21 final size:22
Alignment explanation
Indices: 106125638--106125695 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
106125628 AAAAATATAC
*
106125638 ATAATAA-TATTAA-AAT-AAA
1 ATAATAAGTAATAATAATGAAA
106125657 ATAATAAGTAATAATAATGAAA
1 ATAATAAGTAATAATAATGAAA
*
106125679 ATAAT-AGTTATAATAAT
1 ATAATAAGTAATAATAAT
106125696 AATTATAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.21
20 5 0.15
21 14 0.41
22 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
ATAATAAGTAATAATAATGAAA
Found at i:106126062 original size:28 final size:27
Alignment explanation
Indices: 106126031--106126089 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 27
106126021 ATATATGAAA
106126031 ATAATAC-TATTAATAAAAATATATATAC
1 ATAATACGTA-TAAT-AAAATATATATAC
*
106126059 ATAA-ACGTATAATAAAATATATGTAC
1 ATAATACGTATAATAAAATATATATAC
106126085 -TAATA
1 ATAATA
106126090 TGATAGGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 3 0.11
26 13 0.46
27 6 0.21
28 6 0.21
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (27 bp):
ATAATACGTATAATAAAATATATATAC
Found at i:106126144 original size:27 final size:27
Alignment explanation
Indices: 106126111--106126168 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
106126101 AAAATAAATA
106126111 ATATATATATGATGTGGTATTAAAAAG
1 ATATATATATGATGTGGTATTAAAAAG
106126138 ATATATATATGATGTGGTATTAAAAAG
1 ATATATATATGATGTGGTATTAAAAAG
106126165 ATAT
1 ATAT
106126169 GAAAAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (27 bp):
ATATATATATGATGTGGTATTAAAAAG
Found at i:106129194 original size:42 final size:42
Alignment explanation
Indices: 106129089--106129198 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
106129079 GCATATAAAT
* * *
106129089 GCTAAACGGAAACCTGTAAGGGTTAAACGGAAGCTCATAGGA
1 GCTAAACGGAAACCTATAAGGGTTAAACGGAAGCTCAAAAGA
* * * *
106129131 GCTGAACGGAATCCTATAAGGGTTAAACTGAAGTTCAAAAGA
1 GCTAAACGGAAACCTATAAGGGTTAAACGGAAGCTCAAAAGA
* * *
106129173 GTTAAACTGAAACCTAAAAGGGTTAA
1 GCTAAACGGAAACCTATAAGGGTTAA
106129199 TTTGAAACTC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.20
Consensus pattern (42 bp):
GCTAAACGGAAACCTATAAGGGTTAAACGGAAGCTCAAAAGA
Found at i:106132943 original size:26 final size:26
Alignment explanation
Indices: 106132914--106132967 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
106132904 TCAAACATGC
106132914 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACACCTAGGGGT
* **
106132940 ATTTTGGTAATTTTGCACCTAGGGGT
1 ATTTAGGTAATTTAACACCTAGGGGT
106132966 AT
1 AT
106132968 AATAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (26 bp):
ATTTAGGTAATTTAACACCTAGGGGT
Found at i:106132975 original size:26 final size:27
Alignment explanation
Indices: 106132931--106133006 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
106132921 TCAATTTAAC
* * *
106132931 CCTAGGGGTATTTTGGTAATTTTGC-A
1 CCTAGGGGTATTATAGTAATTTTCCAA
*
106132957 CCTAGGGGTATAATAGTAATTTTCCATA
1 CCTAGGGGTATTATAGTAATTTTCCA-A
*
106132985 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTATAGTAATTT
106133007 ATCTATTCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.50
28 21 0.50
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (27 bp):
CCTAGGGGTATTATAGTAATTTTCCAA
Found at i:106134483 original size:26 final size:26
Alignment explanation
Indices: 106134452--106134559 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
106134442 TGAAATGCCC
*
106134452 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
106134478 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
106134504 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
106134530 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
106134556 ATCA
1 ATCA
106134560 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:106135840 original size:20 final size:20
Alignment explanation
Indices: 106135795--106135844 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
106135785 ATAATAATAA
* *
106135795 AGAATAATGAAAATGATACC
1 AGAATAATGAAAATAACACC
106135815 AGAATAATGAAAATAACACC
1 AGAATAATGAAAATAACACC
**
106135835 TTAATAATGA
1 AGAATAATGA
106135845 TATGGTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.56, C:0.10, G:0.12, T:0.22
Consensus pattern (20 bp):
AGAATAATGAAAATAACACC
Found at i:106135856 original size:3 final size:3
Alignment explanation
Indices: 106135850--106136051 Score: 101
Period size: 3 Copynumber: 66.7 Consensus size: 3
106135840 AATGATATGG
* * * *
106135850 TAA TAA TAA TAG TAA TAGA GAA TCA CAA TACA TTAA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A -TAA TAA TAA TAA TAA
* ** * *
106135897 -AA -AA TAA TAG TAA TAA TAA TAA TAA TAA TGT TGA CAA TAGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* ** * * * *
106135941 TAA TAA -AA AAA GGCA TAA TAA TAA TAG TAA TAAA CAA AAA TAG TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
* * * * *
106135987 TAA TAA TAA TGAA -AG TAG TGGA -AA TAG TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
106136032 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
106136052 GCAAAAATAA
Statistics
Matches: 151, Mismatches: 35, Indels: 26
0.71 0.17 0.12
Matches are distributed among these distances:
2 10 0.07
3 127 0.84
4 12 0.08
5 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:106135904 original size:12 final size:15
Alignment explanation
Indices: 106135883--106136051 Score: 114
Period size: 15 Copynumber: 11.3 Consensus size: 15
106135873 CACAATACAT
106135883 TAATAATAATA-TAA
1 TAATAATAATAGTAA
106135897 -AA-AATAATAGTAA
1 TAATAATAATAGTAA
*
106135910 TAATAATAATAATAA
1 TAATAATAATAGTAA
** * *
106135925 TGTTGACAATAGATAA
1 TAATAATAATAG-TAA
* * **
106135941 TAATAAAAAAAGGCA
1 TAATAATAATAGTAA
106135956 TAATAATAATAGTAA
1 TAATAATAATAGTAA
* *
106135971 TAAACAAAAATAGTAA
1 T-AATAATAATAGTAA
*
106135987 TAATAATAAT-GAAA
1 TAATAATAATAGTAA
* *
106136001 GTAGTGGA-AATAGTAA
1 -TAAT-AATAATAGTAA
* *
106136017 TAATAGTAATAATAA
1 TAATAATAATAGTAA
*
106136032 TAATAATAATAATAA
1 TAATAATAATAGTAA
106136047 TAATA
1 TAATA
106136052 GCAAAAATAA
Statistics
Matches: 116, Mismatches: 30, Indels: 17
0.71 0.18 0.10
Matches are distributed among these distances:
12 7 0.06
13 5 0.04
14 5 0.04
15 72 0.62
16 27 0.23
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
TAATAATAATAGTAA
Found at i:106135967 original size:31 final size:31
Alignment explanation
Indices: 106135932--106135996 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
106135922 TAATGTTGAC
*
106135932 AATAGATAATAATA-AAAAA-AGGCATAATAAT
1 AATAG-TAATAA-ACAAAAATAGGAATAATAAT
*
106135963 AATAGTAATAAACAAAAATAGTAATAATAAT
1 AATAGTAATAAACAAAAATAGGAATAATAAT
106135994 AAT
1 AAT
106135997 GAAAGTAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.03
30 11 0.37
31 18 0.60
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.25
Consensus pattern (31 bp):
AATAGTAATAAACAAAAATAGGAATAATAAT
Found at i:106137295 original size:21 final size:21
Alignment explanation
Indices: 106137268--106137318 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
106137258 ACCTAGCCAC
106137268 CAATACATCCGTTTCAAATCA
1 CAATACATCCGTTTCAAATCA
*
106137289 TAATACATCCGTTTCAAATCA
1 CAATACATCCGTTTCAAATCA
106137310 CAATACATC
1 CAATACATC
106137319 TTTGTACTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.27, G:0.04, T:0.29
Consensus pattern (21 bp):
CAATACATCCGTTTCAAATCA
Found at i:106141395 original size:42 final size:42
Alignment explanation
Indices: 106141337--106141445 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
106141327 GGTGCAGAGG
* * * *
106141337 ACACACGACCAGACCACACGTTCC-TATGCTAGGCCGTGTGTC
1 ACACACGGCCAGACCACACG-CCCATATGCCAGGCCGTGTATC
106141379 ACACACGGCCAGACCACACGCCCATATGCCAGGCCGTGTATC
1 ACACACGGCCAGACCACACGCCCATATGCCAGGCCGTGTATC
*
106141421 ACACACGGCTGAGA-CACACGCCCAT
1 ACACACGGC-CAGACCACACGCCCAT
106141446 GTCTCTGCTC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 2 0.03
42 55 0.92
43 3 0.05
ACGTcount: A:0.27, C:0.39, G:0.21, T:0.14
Consensus pattern (42 bp):
ACACACGGCCAGACCACACGCCCATATGCCAGGCCGTGTATC
Found at i:106142484 original size:46 final size:46
Alignment explanation
Indices: 106142424--106142761 Score: 444
Period size: 46 Copynumber: 7.3 Consensus size: 46
106142414 TTTGACATGA
* * * * ** *
106142424 TGCCATAGTGTCTTTCAACTATGGTCTTAGTCATTTTC-TGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* *
106142470 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
106142516 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
106142562 TGCCATGGTATATTTCAACCATGGTCTTATTTATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *
106142608 TGCTATGGTATCTTTCAACCATGGTCTTACACATTACGTATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *
106142654 TGCCATGATATCTTTCAACCATGGTCTTACACATTACGTATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
106142700 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
106142746 TGCCATGGTATCTTTC
1 TGCCATGGTATCTTTC
106142762 GTATCAGGAG
Statistics
Matches: 269, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
45 4 0.01
46 265 0.99
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:106144557 original size:11 final size:11
Alignment explanation
Indices: 106144541--106144585 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
106144531 ACTAATAAAA
106144541 TAATAAAATAT
1 TAATAAAATAT
106144552 TAATAAAATATCT
1 TAATAAAATA--T
*
106144565 TATTAAAATAT
1 TAATAAAATAT
106144576 TAATAAAATA
1 TAATAAAATA
106144586 ATATTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 20 0.67
13 10 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:106144561 original size:24 final size:24
Alignment explanation
Indices: 106144534--106144586 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
106144524 TTTATATACT
106144534 AATAAAATAATAAAATATTAATAA
1 AATAAAATAATAAAATATTAATAA
*** *
106144558 AATATCTTATTAAAATATTAATAA
1 AATAAAATAATAAAATATTAATAA
106144582 AATAA
1 AATAA
106144587 TATTTATCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
AATAAAATAATAAAATATTAATAA
Found at i:106145620 original size:40 final size:42
Alignment explanation
Indices: 106145571--106145659 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
106145561 GGCTGCACAG
* * * *
106145571 AAGCACATAGGTGCT-AA-AAAAACCCGTAAGGGTTAAACGA
1 AAGCTCATAGGAGCTAAACAAAAACCCATAACGGTTAAACGA
*
106145611 AAGCTCATAGGAGCTAAACAAAAACCCATAACGGTTAAACTA
1 AAGCTCATAGGAGCTAAACAAAAACCCATAACGGTTAAACGA
106145653 AAGCTCA
1 AAGCTCA
106145660 AAAGAGCTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 13 0.31
41 2 0.05
42 27 0.64
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (42 bp):
AAGCTCATAGGAGCTAAACAAAAACCCATAACGGTTAAACGA
Found at i:106145679 original size:42 final size:42
Alignment explanation
Indices: 106145588--106145690 Score: 116
Period size: 42 Copynumber: 2.5 Consensus size: 42
106145578 TAGGTGCTAA
* * *
106145588 AAAAACCCGTAAGGGTTAAACGAAAGCTCATAGGAGCTAAAC
1 AAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGAGCTAAAC
* * *
106145630 AAAAACCCATAACGGTTAAACTAAAGCTCAAAAGAGCTGAAC
1 AAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGAGCTAAAC
*** *
106145672 TGGAACCCAAAAGGGTTAA
1 AAAAACCCATAAGGGTTAA
106145691 TCTGAAACTC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (42 bp):
AAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGAGCTAAAC
Found at i:106148113 original size:18 final size:19
Alignment explanation
Indices: 106148090--106148130 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
106148080 TTGATTCTCA
*
106148090 GGGAAG-CAAAGAAAGCTT
1 GGGAAGTCAAAAAAAGCTT
*
106148108 GGGAAGTCAAAAAAAGGTT
1 GGGAAGTCAAAAAAAGCTT
106148127 GGGA
1 GGGA
106148131 TTTAGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.44, C:0.07, G:0.37, T:0.12
Consensus pattern (19 bp):
GGGAAGTCAAAAAAAGCTT
Found at i:106151522 original size:160 final size:161
Alignment explanation
Indices: 106151329--106151618 Score: 370
Period size: 160 Copynumber: 1.8 Consensus size: 161
106151319 TTATATTAAG
* *** *
106151329 AAATAAATTAAATAAAGACAAATGTATGGTGATGATTTGATACAAGTGTATTAATAAAAATACAT
1 AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
* *
106151394 ACATTTGTAATACTTATAATTT-AGTATTAAATAGATATTTAT-TTAA-ATTATTATATTAAATT
66 ACAATTGTAATACATAT-ATTTGA-TATTAAATAGATATTTATCTTAACATTATTATATTAAATT
106151456 ATTGTTATAATAATAATTATTATTAATATTATC
129 ATTGTTATAATAATAATTATTATTAATATTATC
* * * * * *** **
106151489 AAATAAATTGAATTATGATAAATGTAGGGTGATGATAAAATACATGTGTAATAATATGTATGTAT
1 AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
*
106151554 ACAATTGTAATACATGTATTTGATATTAAATAGATATTTATCTTAACTATTATTATATTAAATTA
66 ACAATTGTAATACATATATTTGATATTAAATAGATATTTATCTTAAC-ATTATTATATTAAATTA
106151619 ATAAACAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
159 22 0.20
160 69 0.64
162 17 0.16
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (161 bp):
AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
ACAATTGTAATACATATATTTGATATTAAATAGATATTTATCTTAACATTATTATATTAAATTAT
TGTTATAATAATAATTATTATTAATATTATC
Found at i:106152840 original size:18 final size:18
Alignment explanation
Indices: 106152786--106152845 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
106152776 ATATTACTGG
106152786 ATTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
* *
106152804 ATTG-AT---TGTTTGAT
1 ATTGAATAACTGATTGTT
106152818 ATTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
106152836 ATTGAATAAC
1 ATTGAATAAC
106152846 AATAAACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.29
15 2 0.06
17 2 0.06
18 20 0.59
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (18 bp):
ATTGAATAACTGATTGTT
Found at i:106162628 original size:17 final size:19
Alignment explanation
Indices: 106162599--106162637 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
106162589 TCAATTGGAG
106162599 AAATTTCAAAAACCATA-A
1 AAATTTCAAAAACCATATA
106162617 AAATTT-AAAAACCATATA
1 AAATTTCAAAAACCATATA
106162635 AAA
1 AAA
106162638 AATCGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23
Consensus pattern (19 bp):
AAATTTCAAAAACCATATA
Found at i:106164824 original size:80 final size:80
Alignment explanation
Indices: 106164677--106164834 Score: 266
Period size: 80 Copynumber: 2.0 Consensus size: 80
106164667 TTAATGAGGA
*
106164677 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACCAGAGTTA
1 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACCACAGTTA
106164742 TTATTTGTAACATGG
66 TTATTTGTAACATGG
*
106164757 AAAAGAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACTC-CA-TC
1 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGAC-CACAGT-
106164820 TATTATTTGTAACAT
64 TATTATTTGTAACAT
106164835 TAATTTAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
79 1 0.01
80 72 0.97
81 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.26
Consensus pattern (80 bp):
AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACCACAGTTA
TTATTTGTAACATGG
Found at i:106169507 original size:11 final size:11
Alignment explanation
Indices: 106169491--106169517 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
106169481 AAATTTCCAC
106169491 ACACATAATAA
1 ACACATAATAA
106169502 ACACATAATAA
1 ACACATAATAA
106169513 ACACA
1 ACACA
106169518 AAAAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.22, G:0.00, T:0.15
Consensus pattern (11 bp):
ACACATAATAA
Found at i:106174761 original size:18 final size:18
Alignment explanation
Indices: 106174724--106174762 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
106174714 TAATCGATTT
*
106174724 TTTTATATGGTTTTTTAA
1 TTTTATATGGTTTTTAAA
106174742 TTTT-TATGGTTTTTGAAA
1 TTTTATATGGTTTTT-AAA
106174760 TTT
1 TTT
106174763 CTCCAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67
Consensus pattern (18 bp):
TTTTATATGGTTTTTAAA
Found at i:106182353 original size:12 final size:12
Alignment explanation
Indices: 106182338--106182368 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
106182328 ATATTATTTA
106182338 AATTATCTTGTG
1 AATTATCTTGTG
106182350 AATTATCTTGTG
1 AATTATCTTGTG
106182362 AATTATC
1 AATTATC
106182369 AATTTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (12 bp):
AATTATCTTGTG
Found at i:106185305 original size:46 final size:47
Alignment explanation
Indices: 106185230--106185490 Score: 159
Period size: 47 Copynumber: 5.2 Consensus size: 47
106185220 TGAACATAGT
* * ** *
106185230 CACATATTACACAACGAAGCCATAGCCCAGCCATGGTCTTACAC-GGAT
1 CACATA-T-CACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAG
* * * * *
106185278 CACATATCACACTGATTCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAG
* * *
106185325 CACATATCACTCCGATGCCATAGCCCAGATATGGTCTTATA-TGGAAG
1 CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACAGG-AG
* * *
106185372 CACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAAAT
1 CACAT-ATCACA-----CCGATGCCATAGCCCAGATATGGTCTTACACAGG--AG
* * * *
106185426 CACATAATCACATCACACTGATGCCATAGCCCAGCTATGGTCTTATACAGAAAT
1 CACAT-AT--CA-CAC-C-GATGCCATAGCCCAGATATGGTCTTACACAG-GAG
106185480 CACATATCACA
1 CACATATCACA
106185491 TGTTGCCATG
Statistics
Matches: 176, Mismatches: 20, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
46 28 0.16
47 47 0.27
48 11 0.06
50 2 0.01
51 2 0.01
52 1 0.01
53 34 0.19
54 46 0.26
55 1 0.01
56 2 0.01
57 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAG
Found at i:106185392 original size:53 final size:52
Alignment explanation
Indices: 106185248--106185491 Score: 224
Period size: 54 Copynumber: 4.8 Consensus size: 52
106185238 ACACAACGAA
** * *
106185248 GCCATAGCCCAGCCATGGTCTTACACGG-ATCACAT-ATCACA--CT--GAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCTCCGAT
* * * *
106185294 TCCATATCCCAGATATGGTCTTATACAGTAGCACAT-AT--CA--CTCCGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCTCCGAT
*
106185341 GCCATAGCCCAGATATGGTCTTATATGGAAGCACATAATCACATCTCTCCGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATC-CTCCGAT
* * * *
106185394 GCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCACATCACACTGAT
1 GCCATAGCCCAGATATGGTCTTATACGG-AAGCACATAATCACATC-CTCCGAT
* * *
106185448 GCCATAGCCCAGCTATGGTCTTATACAGAAATCACAT-ATCACAT
1 GCCATAGCCCAGATATGGTCTTATAC-GGAAGCACATAATCACAT
106185492 GTTGCCATGG
Statistics
Matches: 168, Mismatches: 19, Indels: 15
0.83 0.09 0.07
Matches are distributed among these distances:
45 4 0.02
46 22 0.13
47 42 0.25
48 2 0.01
50 2 0.01
53 40 0.24
54 55 0.33
55 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (52 bp):
GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCTCCGAT
Found at i:106185454 original size:54 final size:54
Alignment explanation
Indices: 106185330--106185491 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
106185320 AGTAGCACAT
* * * *
106185330 ATCACTCCGATGCCATAGCCCAGATATGGTCTTATATGG-AAGCACATAATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
* *
106185383 ATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
* *
106185437 ATCACACTGATGCCATAGCCCAGCTATGGTCTTATACAGAAATCACAT-ATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
106185490 AT
1 AT
106185492 GTTGCCATGG
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 43 0.43
54 57 0.57
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (54 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
Found at i:106189911 original size:47 final size:47
Alignment explanation
Indices: 106189776--106189987 Score: 160
Period size: 47 Copynumber: 4.3 Consensus size: 47
106189766 CATAGTAAAA
* *
106189776 CTATGGTCTTGTACA-TAGTCACATATTACACAGCGA-AGCCATAGCCCAG
1 CTATGGTCTTATACAGTAG-CACATA-T-CACACCGATA-CCATAGCCCAG
* * * * * * *
106189825 CCATGGTCTTACAC-GGATCACATATCACACAGATGCCATATCCCAG
1 CTATGGTCTTATACAGTAGCACATATCACACCGATACCATAGCCCAG
*
106189871 ATATGGTCTTATACAGTAGCACATATCACACCGATACCATAGCCCAG
1 CTATGGTCTTATACAGTAGCACATATCACACCGATACCATAGCCCAG
* * ** * *
106189918 CTATGGTTTTATGCGAAAATCACATGATCACATCACACCGATGCCATAGCCCAG
1 CTATGGTCTTATAC-AGTAGCAC---AT---ATCACACCGATACCATAGCCCAG
106189972 CTATGGTCTTATACAG
1 CTATGGTCTTATACAG
106189988 ATGGTCTTTT
Statistics
Matches: 126, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
46 27 0.21
47 39 0.31
48 11 0.09
49 12 0.10
51 2 0.02
53 1 0.01
54 34 0.27
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
CTATGGTCTTATACAGTAGCACATATCACACCGATACCATAGCCCAG
Found at i:106193651 original size:43 final size:43
Alignment explanation
Indices: 106193601--106193757 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
106193591 TGTGTTATCG
* *
106193601 TGTAAGACCACGTCTGGCACGTTGGCATTGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATGTGATTACA
* *
106193644 TGTAAGACCATGTCTGGGACATTGGCATTG-TAT-TAGATT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATGT-GATTACA
** * *
106193685 TGTAAGACC-CTGTCTGAAACAG-TGGCATCGATATGTGATTGCA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATATGTGATTACA
*
106193728 TGTAAGACCACGTCTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
106193758 TGCGATATGC
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
41 25 0.27
42 15 0.16
43 52 0.56
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATGTGATTACA
Found at i:106193700 original size:84 final size:84
Alignment explanation
Indices: 106193601--106193758 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 84
106193591 TGTGTTATCG
** * * *
106193601 TGTAAGACCACGTCTGGCAC-GTTGGCATTGATATGTGATTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCACGTCTGAAACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACA
106193665 TTGGCATTGTATTAGATTCA
65 TTGGCATTGTATTAGATTCA
* **
106193685 TGTAAGACC-CTGTCTGAAACAGTGGCATCGATATGTGATTGCATGTAAGACCACGTCTGGGATG
1 TGTAAGACCAC-GTCTGAAACAGTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACA
106193749 TTGGCATTGT
65 TTGGCATTGT
106193759 GCGATATGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 1 0.02
84 62 0.97
85 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (84 bp):
TGTAAGACCACGTCTGAAACAGTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACAT
TGGCATTGTATTAGATTCA
Found at i:106194169 original size:15 final size:17
Alignment explanation
Indices: 106194149--106194186 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
106194139 CAAATCCCCT
106194149 AGCCCAAATAC-C-ACC
1 AGCCCAAATACTCAACC
106194164 AGCCC-AATACTCAACC
1 AGCCCAAATACTCAACC
106194180 AGCCCAA
1 AGCCCAA
106194187 CAAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.25
15 6 0.30
16 8 0.40
17 1 0.05
ACGTcount: A:0.39, C:0.45, G:0.08, T:0.08
Consensus pattern (17 bp):
AGCCCAAATACTCAACC
Found at i:106194284 original size:35 final size:35
Alignment explanation
Indices: 106194238--106194308 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
106194228 CACTTGCCTC
106194238 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
106194273 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
106194308 T
1 T
106194309 CACACACCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.17, C:0.48, G:0.11, T:0.24
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:106194334 original size:34 final size:35
Alignment explanation
Indices: 106194256--106194335 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
106194246 CTCCCATGCT
* * * * *
106194256 GTCTGCCACCAGCACCATTCCCACTCTCCCATGCT
1 GTCTGCCACCAGCACCATTCACACACCCCCATACC
106194291 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTGCCACCAGCACCATTCACACACCCCCATACC
*
106194325 GTCTACCACCA
1 GTCTGCCACCA
106194336 CCATGCCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.23, C:0.50, G:0.10, T:0.17
Consensus pattern (35 bp):
GTCTGCCACCAGCACCATTCACACACCCCCATACC
Found at i:106194666 original size:9 final size:8
Alignment explanation
Indices: 106194648--106194679 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
106194638 TATATAGTGC
106194648 AAAAATAT
1 AAAAATAT
106194656 AAAACATAT
1 AAAA-ATAT
106194665 AAAAATAT
1 AAAAATAT
106194673 AAAAATA
1 AAAAATA
106194680 AATAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAAATAT
Found at i:106207206 original size:45 final size:40
Alignment explanation
Indices: 106207114--106207220 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
106207104 TTATGCTTAA
*
106207114 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAGATCAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGATCAG
** * *
106207154 GGCGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAAGATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A--A--AAAAAAAGATCAG
*
106207199 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
106207221 CTAATGAAAC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
40 22 0.41
41 1 0.02
43 1 0.02
44 9 0.17
45 21 0.39
ACGTcount: A:0.43, C:0.17, G:0.26, T:0.14
Consensus pattern (40 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGATCAG
Found at i:106208101 original size:66 final size:69
Alignment explanation
Indices: 106207984--106208154 Score: 206
Period size: 66 Copynumber: 2.5 Consensus size: 69
106207974 CTTTCCAAGG
**
106207984 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
106208046 T-TTT
65 TGTTT
** * *
106208050 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
106208115 GTTT
66 GTTT
* ** * *
106208119 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
106208155 TTTAATTTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
66 45 0.50
67 10 0.11
68 1 0.01
69 34 0.38
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTT
Found at i:106208154 original size:69 final size:66
Alignment explanation
Indices: 106207984--106208580 Score: 228
Period size: 54 Copynumber: 8.9 Consensus size: 66
106207974 CTTTCCAAGG
* **
106207984 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAATTTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAATTTTTT
106208049 T
66 T
* ** * *
106208050 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTA-TTTTAATTT-T
106208115 GTTT
64 -TTT
* ** **** * *
106208119 TAAATTGACTCATATTGCGAGAGGTGAG-T-----T-AAG-C-CTTTTA---ATTTTACTTTTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAATTTTTT
*
106208172 C
66 T
* * * * *
106208173 AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATTTTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTT-AA-TTT-
106208238 TGTGTT
63 T-T-TT
** * * *
106208244 TTAATCAACTCATA-TGCGAGAGGTGAGTTGAGCCTC--GGCACATCCGAGGTATTTCAATCTGT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC-GCCGAGGTATTTTAA-----
106208306 TTGCAAATTGTTT
60 TT-----TT-TTT
* * *** * *
106208319 CAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCT---TTTA-----A--T-TTCT-ACTTTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAATTTTT
*
106208372 TC
65 TT
* * * * *
106208374 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGT-ATTTTAATTT-T
106208439 GTTGT
64 -TT-T
**
106208444 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACAC-ATGAGGTATTTTCAAT
1 ----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTT-AA-
106208507 TTCTGCTTTT
60 TT-T--TTTT
* ** *
106208517 CAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-AGACACGTTGAGGTATTTCAATTT
1 ---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAATTT
106208581 CTGTTCAATT
Statistics
Matches: 404, Mismatches: 70, Indels: 110
0.69 0.12 0.19
Matches are distributed among these distances:
54 57 0.14
55 4 0.01
56 10 0.02
57 2 0.00
60 3 0.01
61 4 0.01
62 3 0.01
63 4 0.01
64 1 0.00
66 54 0.13
67 14 0.03
68 14 0.03
69 40 0.10
70 24 0.06
71 17 0.04
72 56 0.14
73 18 0.04
74 39 0.10
75 4 0.01
76 16 0.04
77 20 0.05
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (66 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAATTTTTT
T
Found at i:106208402 original size:201 final size:195
Alignment explanation
Indices: 106207984--106208555 Score: 613
Period size: 201 Copynumber: 2.9 Consensus size: 195
106207974 CTTTCCAAGG
* * * *
106207984 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT-AA-TTT-
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTTG
* *
106208046 TT-TTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC-GCCGAGGTATTT---
65 TTGTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACATCCGAGGTATTTCAA
* **
106208106 TTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTT
129 TTAGTTTATGTTTAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTT
106208171 AC
194 AC
*
106208173 AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATTTTG
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTTG
**
106208238 TGTGTTTTAATCAACTCATA-TGCGAGAGGTGAGTTGAGCCTC-GGCACATCCGAGGTATTTCAA
65 T-TGTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATCCGAGGTATTTCAA
*
106208301 TCT-GTTTGCAAATTGTTTCAAAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTT
129 T-TAGTTT----A-TGTTT-AAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT
106208364 CTACTTTTT-C
186 -TACTTTTTAC
* *
106208374 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTCAATTT-T
* * *
106208439 GTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACAT--GAGGTATTT
64 GTTGT---TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATCCGAGGTA-TT
** * *
106208502 TCAATT--TCTGCT-TTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
125 TCAATTAGT-TTATGTTT---AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
106208556 CAGACACGTT
Statistics
Matches: 326, Mismatches: 27, Indels: 49
0.81 0.07 0.12
Matches are distributed among these distances:
189 51 0.16
190 2 0.01
191 8 0.02
192 12 0.04
193 22 0.07
194 14 0.04
195 5 0.02
196 1 0.00
198 3 0.01
199 3 0.01
200 39 0.12
201 97 0.30
202 13 0.04
203 1 0.00
204 20 0.06
205 29 0.09
206 6 0.02
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (195 bp):
AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATTTTGT
TGTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATCCGAGGTATTTCAATT
AGTTTATGTTTAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTAC
Found at i:106208539 original size:72 final size:74
Alignment explanation
Indices: 106208374--106208704 Score: 411
Period size: 72 Copynumber: 4.4 Consensus size: 74
106208364 CTACTTTTTC
* * *
106208374 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTTTCAATTTCT
*
106208439 G-TTGTCAAA
65 GCTTTTCAAA
*
106208448 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC-ATGAGGTATTTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTCTG
106208512 CTTTTC-AA
66 CTTTTCAAA
* *
106208520 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGACACGTTGAGGTA-TTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTCTG
***
106208584 TTCAATTTGTTTTCA
66 --C---TT-TTCAAA
* * * *
106208599 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTTCAATTTCT
*
106208664 AC-TTTCAAA
65 GCTTTTCAAA
*
106208673 AAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
106208705 ACCTTTTAAT
Statistics
Matches: 226, Mismatches: 20, Indels: 22
0.84 0.07 0.08
Matches are distributed among these distances:
72 74 0.33
73 16 0.07
74 72 0.32
75 1 0.00
77 2 0.01
78 2 0.01
79 38 0.17
80 11 0.05
81 10 0.04
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTCTG
CTTTTCAAA
Found at i:106209632 original size:35 final size:35
Alignment explanation
Indices: 106209586--106209652 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
106209576 TTGCCTCTTT
106209586 CCACTCTCCCATGCTGTCTGCCACCAGCACCACTC
1 CCACTCTCCCATGCTGTCTGCCACCAGCACCACTC
106209621 CCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 CCACTCTCCCATGCTGTCTGCCACCAGCACCA
106209653 TCACACACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.18, C:0.51, G:0.12, T:0.19
Consensus pattern (35 bp):
CCACTCTCCCATGCTGTCTGCCACCAGCACCACTC
Found at i:106209679 original size:34 final size:35
Alignment explanation
Indices: 106209601--106209680 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
106209591 CTCCCATGCT
* * * * *
106209601 GTCTGCCACCAGCACCACTCCCACTCTCCCATGCT
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
106209636 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
*
106209670 GTCTACCACCA
1 GTCTGCCACCA
106209681 CCATGCCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.23, C:0.51, G:0.10, T:0.16
Consensus pattern (35 bp):
GTCTGCCACCAGCACCACTCACACACCCCCATACC
Found at i:106210011 original size:9 final size:8
Alignment explanation
Indices: 106209993--106210024 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
106209983 TATATAGTGC
106209993 AAAAATAT
1 AAAAATAT
106210001 AAAACATAT
1 AAAA-ATAT
106210010 AAAAATAT
1 AAAAATAT
106210018 AAAAATA
1 AAAAATA
106210025 AATAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAAATAT
Found at i:106216705 original size:27 final size:26
Alignment explanation
Indices: 106216501--106216705 Score: 151
Period size: 26 Copynumber: 7.7 Consensus size: 26
106216491 TACATACTTC
*
106216501 TTATATATTATATATTTTCAAAGTTATTT
1 TTATATATTATTTATTTT-AAA-TT-TTT
*
106216530 TTACATATTATTTATTTTAAATTTTT
1 TTATATATTATTTATTTTAAATTTTT
* * * *
106216556 TCCACATATGATTTATTTTAAATCTTT
1 T-TATATATTATTTATTTTAAATTTTT
* * * *
106216583 GTGTATATTATCTATTTTAAAGTTTT
1 TTATATATTATTTATTTTAAATTTTT
* * * ** *
106216609 ATATGTATTACTTGGTTTAAATTATT
1 TTATATATTATTTATTTTAAATTTTT
* * * *
106216635 TTATATGTTATTTACTTTAAAATTTC
1 TTATATATTATTTATTTTAAATTTTT
*
106216661 TTATGTATTATTTATTTTAAATTTCTTT
1 TTATATATTATTTATTTTAAA-TT-TTT
*
106216689 TTACATATTA-TTATTTT
1 TTATATATTATTTATTTT
106216706 GAGCCTCTTA
Statistics
Matches: 135, Mismatches: 38, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
26 74 0.55
27 32 0.24
28 13 0.10
29 16 0.12
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.60
Consensus pattern (26 bp):
TTATATATTATTTATTTTAAATTTTT
Found at i:106216748 original size:22 final size:24
Alignment explanation
Indices: 106216711--106216800 Score: 84
Period size: 21 Copynumber: 3.9 Consensus size: 24
106216701 ATTTTGAGCC
*
106216711 TCTTAATAT-TTATTTTAAA-TT-
1 TCTTTATATATTATTTTAAACTTG
106216732 TCTTTATATATTATTTTAAACTTG
1 TCTTTATATATTATTTTAAACTTG
* *
106216756 TC-TTAT-TCTTA-TTTAAATTTG
1 TCTTTATATATTATTTTAAACTTG
*
106216777 TCTTTATACAACTTATTTTAAACT
1 TCTTTATA-TA-TTATTTTAAACT
106216801 CTCTTATTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 19 0.35
22 18 0.33
23 6 0.11
24 2 0.04
25 3 0.05
26 7 0.13
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (24 bp):
TCTTTATATATTATTTTAAACTTG
Found at i:106216777 original size:21 final size:23
Alignment explanation
Indices: 106216711--106216784 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
106216701 ATTTTGAGCC
*
106216711 TCTTA-ATATTTATTTTAAATTTC
1 TCTTATATA-TTATTTTAAATTTG
*
106216734 T-TTATATATTATTTTAAACTTG
1 TCTTATATATTATTTTAAATTTG
*
106216756 TCTTAT-TCTTA-TTTAAATTTG
1 TCTTATATATTATTTTAAATTTG
106216777 TCTT-TATA
1 TCTTATATA
106216785 CAACTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 20 0.47
23 8 0.19
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (23 bp):
TCTTATATATTATTTTAAATTTG
Found at i:106216821 original size:44 final size:43
Alignment explanation
Indices: 106216717--106216826 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 43
106216707 AGCCTCTTAA
* * *
106216717 TATTTATTTTAAATT-TCTTTATATATTATTTTAAACTTGTCT
1 TATTTATTTTAATTTGTCTTTATAAATTATTTTAAACTTCTCT
*
106216759 TATTCTTATTTAAATTTGTCTTTATACAACTTATTTTAAAC-TCTCT
1 TA-T-TTATTTTAATTTGTCTTTATA-AA-TTATTTTAAACTTCTCT
106216805 TATTTATTTTAATTTGT-TTTAT
1 TATTTATTTTAATTTGTCTTTAT
106216827 TATTGTTCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 6 0.10
44 23 0.40
45 9 0.16
46 7 0.12
47 11 0.19
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (43 bp):
TATTTATTTTAATTTGTCTTTATAAATTATTTTAAACTTCTCT
Found at i:106216892 original size:21 final size:21
Alignment explanation
Indices: 106216866--106216908 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
106216856 AGTAATTATT
106216866 ATATATATATTAC-CTATTTTA
1 ATATATATA-TACTCTATTTTA
106216887 ATATATATATACTCTATTTTA
1 ATATATATATACTCTATTTTA
106216908 A
1 A
106216909 ATTGTTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATATATATACTCTATTTTA
Found at i:106220903 original size:20 final size:18
Alignment explanation
Indices: 106220867--106220926 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
106220857 TAGGTACTTC
106220867 TATA-TTTTTTACAATTTAT
1 TATATTTTTTTACAA-TT-T
**
106220886 TATATTTTTTTAGGATTT
1 TATATTTTTTTACAATTT
* *
106220904 TATATGTTTTTATAATATT
1 TATATTTTTTTACAAT-TT
106220923 TATA
1 TATA
106220927 AGTTTTATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
18 14 0.41
19 12 0.35
20 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (18 bp):
TATATTTTTTTACAATTT
Found at i:106220924 original size:19 final size:19
Alignment explanation
Indices: 106220867--106220967 Score: 68
Period size: 19 Copynumber: 5.5 Consensus size: 19
106220857 TAGGTACTTC
*
106220867 TATAT-TTTTTACAATTTAT
1 TATATGTTTTTATAATTT-T
* **
106220886 TATATTTTTTTAGGA-TTT
1 TATATGTTTTTATAATTTT
*
106220904 TATATGTTTTTATAATATT
1 TATATGTTTTTATAATTTT
* **
106220923 TATAAG-TTTTATTAGCTTT
1 TATATGTTTTTA-TAATTTT
106220942 TATA--TTTTTATAATTTT
1 TATATGTTTTTATAATTTT
*
106220959 TATAGGTTT
1 TATATGTTT
106220968 ATCTAAATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
17 9 0.14
18 23 0.36
19 25 0.39
20 7 0.11
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
TATATGTTTTTATAATTTT
Found at i:106222856 original size:40 final size:40
Alignment explanation
Indices: 106222801--106222880 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
106222791 GAAGTCTAAG
106222801 TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
1 TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
106222841 TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
1 TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
106222881 GACAACTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (40 bp):
TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
Found at i:106223141 original size:20 final size:20
Alignment explanation
Indices: 106223103--106223150 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
106223093 TAAATTCTAA
* **
106223103 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAAATAATT
106223123 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
106223143 AAA-ATAAA
1 AAAGATAAA
106223151 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:106223194 original size:15 final size:15
Alignment explanation
Indices: 106223174--106223203 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106223164 ATAATCCTAA
*
106223174 TAATTATCTTAATAT
1 TAATTATCCTAATAT
106223189 TAATTATCCTAATAT
1 TAATTATCCTAATAT
106223204 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:106223799 original size:11 final size:11
Alignment explanation
Indices: 106223783--106223826 Score: 58
Period size: 10 Copynumber: 4.2 Consensus size: 11
106223773 ATATTTTCTC
106223783 TTTTTTT-CTT
1 TTTTTTTACTT
106223793 TTTTTTTAC-T
1 TTTTTTTACTT
106223803 TTTTTTTACTT
1 TTTTTTTACTT
106223814 TTTATTTTA-TT
1 TTT-TTTTACTT
106223825 TT
1 TT
106223827 ATTTATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 17 0.55
11 9 0.29
12 5 0.16
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTACTT
Found at i:106223815 original size:17 final size:17
Alignment explanation
Indices: 106223795--106223827 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
106223785 TTTTTCTTTT
106223795 TTTTTACTTTT-TTTTAC
1 TTTTTA-TTTTATTTTAC
106223812 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
106223828 TTTATGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTATTTTAC
Found at i:106223826 original size:10 final size:11
Alignment explanation
Indices: 106223774--106223830 Score: 52
Period size: 10 Copynumber: 5.5 Consensus size: 11
106223764 TATTTACATA
106223774 TATTTT-CTCTT
1 TATTTTACT-TT
106223785 T-TTTT-CTTT
1 TATTTTACTTT
*
106223794 TTTTTTACTTT
1 TATTTTACTTT
106223805 T-TTTTACTTTT
1 TATTTTAC-TTT
106223816 TATTTTA-TTT
1 TATTTTACTTT
106223826 TATTT
1 TATTT
106223831 ATGTATGTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
9 3 0.07
10 24 0.57
11 10 0.24
12 5 0.12
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.81
Consensus pattern (11 bp):
TATTTTACTTT
Found at i:106223831 original size:21 final size:20
Alignment explanation
Indices: 106223782--106223831 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
106223772 TATATTTTCT
106223782 CTTTTTTT-CTTTTTTTTTA
1 CTTTTTTTACTTTTTTTTTA
106223801 CTTTTTTTTACTTTTTATTTTA
1 C-TTTTTTTACTTTTT-TTTTA
106223823 -TTTTATTTA
1 CTTTT-TTTA
106223832 TGTATGTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.04
20 11 0.41
21 10 0.37
22 5 0.19
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (20 bp):
CTTTTTTTACTTTTTTTTTA
Found at i:106224779 original size:15 final size:14
Alignment explanation
Indices: 106224757--106224825 Score: 74
Period size: 13 Copynumber: 5.0 Consensus size: 14
106224747 TATTAATATC
106224757 TAAAAATAAT-AAA
1 TAAAAATAATAAAA
*
106224770 TAATAAAATAATAAGA
1 T-A-AAAATAATAAAA
106224786 T-AAAATAAATAAAA
1 TAAAAAT-AATAAAA
106224800 TAAAAATAA-AAAA
1 TAAAAATAATAAAA
106224813 TAAAAA-AATAAAA
1 TAAAAATAATAAAA
106224826 ATTTGGTTGC
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
12 2 0.04
13 20 0.42
14 10 0.21
15 13 0.27
16 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.20
Consensus pattern (14 bp):
TAAAAATAATAAAA
Found at i:106224780 original size:8 final size:8
Alignment explanation
Indices: 106224759--106224823 Score: 61
Period size: 7 Copynumber: 8.9 Consensus size: 8
106224749 TTAATATCTA
106224759 AAAATAAT
1 AAAATAAT
106224767 -AAATAAT
1 AAAATAAT
106224774 AAAATAAT
1 AAAATAAT
*
106224782 AAGATAA-
1 AAAATAAT
*
106224789 AATA-AAT
1 AAAATAAT
106224796 AAAAT-A-
1 AAAATAAT
106224802 AAAATAA-
1 AAAATAAT
*
106224809 AAAATAAA
1 AAAATAAT
106224817 AAAATAA
1 AAAATAA
106224824 AAATTTGGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
6 7 0.14
7 22 0.45
8 20 0.41
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (8 bp):
AAAATAAT
Found at i:106224799 original size:22 final size:22
Alignment explanation
Indices: 106224757--106224826 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
106224747 TATTAATATC
* *
106224757 TAAAAATAATAAAT-AATAAAA
1 TAAAAAGAAAAAATAAATAAAA
* *
106224778 TAATAAGATAAAATAAATAAAA
1 TAAAAAGAAAAAATAAATAAAA
*
106224800 TAAAAATAAAAAATAAA-AAAA
1 TAAAAAGAAAAAATAAATAAAA
106224821 TAAAAA
1 TAAAAA
106224827 TTTGGTTGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 20 0.49
22 21 0.51
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (22 bp):
TAAAAAGAAAAAATAAATAAAA
Found at i:106224824 original size:8 final size:8
Alignment explanation
Indices: 106224758--106224826 Score: 63
Period size: 8 Copynumber: 8.4 Consensus size: 8
106224748 ATTAATATCT
106224758 AAAAATAA
1 AAAAATAA
106224766 TAAATAATAA
1 -AAA-AATAA
*
106224776 AATAATAA
1 AAAAATAA
106224784 GATAAAATAA
1 -A-AAAATAA
106224794 ATAAAAT--
1 A-AAAATAA
106224801 AAAAAT-A
1 AAAAATAA
106224808 AAAAATAA
1 AAAAATAA
106224816 AAAAATAA
1 AAAAATAA
106224824 AAA
1 AAA
106224827 TTTGGTTGCC
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
6 5 0.09
7 7 0.13
8 17 0.32
9 13 0.25
10 11 0.21
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (8 bp):
AAAAATAA
Found at i:106224826 original size:15 final size:16
Alignment explanation
Indices: 106224758--106224826 Score: 70
Period size: 15 Copynumber: 4.2 Consensus size: 16
106224748 ATTAATATCT
*
106224758 AAAAATAATAAATAATA
1 AAAAATAAGAAA-AATA
106224775 AAATAATAAGATAAAATA
1 AAA-AATAAGA-AAAATA
* *
106224793 AATAA-AATAAAAATA
1 AAAAATAAGAAAAATA
106224808 AAAAATAA-AAAAATA
1 AAAAATAAGAAAAATA
106224823 AAAA
1 AAAA
106224827 TTTGGTTGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
15 21 0.47
16 5 0.11
17 5 0.11
18 12 0.27
19 2 0.04
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (16 bp):
AAAAATAAGAAAAATA
Found at i:106225473 original size:11 final size:11
Alignment explanation
Indices: 106225457--106225481 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
106225447 ACTTGATCTC
106225457 CCTATTTGAAA
1 CCTATTTGAAA
106225468 CCTATTTGAAA
1 CCTATTTGAAA
106225479 CCT
1 CCT
106225482 CTGCTAGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (11 bp):
CCTATTTGAAA
Found at i:106229439 original size:40 final size:40
Alignment explanation
Indices: 106229384--106229508 Score: 207
Period size: 40 Copynumber: 3.1 Consensus size: 40
106229374 TATTCGGATG
106229384 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
106229424 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
106229464 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
106229504 ATATC
1 ATATC
106229509 TGGCTAAATC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 78 0.98
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:106234530 original size:15 final size:15
Alignment explanation
Indices: 106234510--106234539 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106234500 ATAATCCTAA
*
106234510 TAATTATCTTAATAT
1 TAATTATCCTAATAT
106234525 TAATTATCCTAATAT
1 TAATTATCCTAATAT
106234540 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:106236715 original size:40 final size:40
Alignment explanation
Indices: 106236666--106236743 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
106236656 ATTGGAAGAA
*
106236666 ACATGGATGTTGTATTGTAAACATGTTGATTAATAGAATT
1 ACATAGATGTTGTATTGTAAACATGTTGATTAATAGAATT
*
106236706 ACATAGATGTTGTATTGTAAACATGTTGATTGATAGAA
1 ACATAGATGTTGTATTGTAAACATGTTGATTAATAGAA
106236744 GCTTAGTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (40 bp):
ACATAGATGTTGTATTGTAAACATGTTGATTAATAGAATT
Found at i:106244614 original size:29 final size:30
Alignment explanation
Indices: 106244568--106244626 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
106244558 TTTTAAACAT
106244568 TTTTATAAAGGTTAGGCCCTTATATGAGCA
1 TTTTATAAAGGTTAGGCCCTTATATGAGCA
* * *
106244598 TTTTA-AAAGGTTTGGCCTTTATGTGAGCA
1 TTTTATAAAGGTTAGGCCCTTATATGAGCA
106244627 ACCCCTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (30 bp):
TTTTATAAAGGTTAGGCCCTTATATGAGCA
Found at i:106248692 original size:128 final size:130
Alignment explanation
Indices: 106248393--106248693 Score: 299
Period size: 128 Copynumber: 2.3 Consensus size: 130
106248383 CGGGAGATTG
* * *
106248393 CAACCCAGCACGATAGGGCACTATTCCCCGAACTGTCAAACATCGAACAATTCTTTCTTTTTAAA
1 CAACCCAGCACGATAGGGCA-TATT-CCCGAATTGTCAAACATCGAACAATCCTTTCTTTTGAAA
* * * * * *
106248458 GGGTTTTTAGAAAACGTGAATGAAACTTCGAAGGGATCTTCGATTGTTTAGAACAAATGAAAAAG
64 GGGTTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTGTTTAGAACAAACGAAAAAG
*
106248523 CG
129 CA
* * * * * *
106248525 CAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCGAAC-ATCCTTTGTTTTGAAA-
1 CAACCCAGCACGATAGGGCA-TATTCCCGAATTGTCAAACATCGAACAATCCTTTCTTTTGAAAG
* * * *
106248588 GGTTTTTA-ATAAACATGAGTGAAAACCT-AAAGGAATA-TCTGATTGTTTTGAGCAAACG-AGA
65 GGTTTTTAGA-AAACATGAATG-AAACCTCAAAGGAATATTC-GATTGTTTAGAACAAACGAAAA
*
106248649 ATCA
127 AGCA
*
106248653 CAACCCAGCACAATAGGGCATAATTCCCGAATTGTCAAACA
1 CAACCCAGCACGATAGGGCAT-ATTCCCGAATTGTCAAACA
106248694 CCGAGATCCA
Statistics
Matches: 138, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
128 41 0.30
129 38 0.28
130 18 0.13
131 17 0.12
132 24 0.17
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (130 bp):
CAACCCAGCACGATAGGGCATATTCCCGAATTGTCAAACATCGAACAATCCTTTCTTTTGAAAGG
GTTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTGTTTAGAACAAACGAAAAAGCA
Found at i:106256148 original size:28 final size:28
Alignment explanation
Indices: 106256108--106256214 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
106256098 GAATCATTCG
* * *
106256108 ATATTTTGCACACTAAGCGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
106256136 AGATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
106256164 ATATTTCGTACACTAAGTACCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
106256192 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
106256215 ATTTGATTGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:106261209 original size:28 final size:28
Alignment explanation
Indices: 106261175--106261329 Score: 121
Period size: 28 Copynumber: 5.5 Consensus size: 28
106261165 AACCGATCTT
*
106261175 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**** * *
106261203 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
106261232 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
* * **** * *
106261260 GCACACATAATGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
106261289 GCACATACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**
106261317 ATACACACAGTGC
1 GCACACACAGTGC
106261330 CTATGTTCAC
Statistics
Matches: 90, Mismatches: 35, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
28 51 0.57
29 39 0.43
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGGAACTC
Found at i:106261215 original size:57 final size:57
Alignment explanation
Indices: 106261145--106261331 Score: 284
Period size: 57 Copynumber: 3.2 Consensus size: 57
106261135 GATCTCATTT
* *
106261145 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
106261204 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
* * * * *
106261261 CACACATAATGCCTCAACAACCGATCTCGCACATACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
*
106261318 TACACACAGTGCCT
1 CACACACAGTGCCT
106261332 ATGTTCACTT
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
57 111 0.94
59 7 0.06
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
Found at i:106261241 original size:29 final size:29
Alignment explanation
Indices: 106261145--106261301 Score: 111
Period size: 29 Copynumber: 5.4 Consensus size: 29
106261135 GATCTCATTT
* *
106261145 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
***** * *
106261176 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
106261204 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
***** * *
106261233 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
* *
106261261 CACACATAATGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
106261290 CACATACAGTGC
1 CACACACAGTGC
106261302 TCGGTTACGG
Statistics
Matches: 89, Mismatches: 35, Indels: 6
0.68 0.27 0.05
Matches are distributed among these distances:
28 38 0.43
29 44 0.49
31 7 0.08
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.18
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:106263995 original size:19 final size:20
Alignment explanation
Indices: 106263952--106264007 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
106263942 ATTGGGTCTT
106263952 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
106263972 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
106263991 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
106264008 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:106268757 original size:28 final size:27
Alignment explanation
Indices: 106268707--106268759 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
106268697 CTATTCAGAA
* *
106268707 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
106268734 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
106268760 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:106268762 original size:62 final size:61
Alignment explanation
Indices: 106268684--106268802 Score: 154
Period size: 62 Copynumber: 1.9 Consensus size: 61
106268674 TCAAGCTTTA
* *
106268684 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCTAAGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATTAAT
*
106268746 CTGGGCC-ATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTAT
1 CTGGGCCTA-AGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTAT
106268803 CAGTCTGTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
61 17 0.33
62 31 0.61
63 3 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (61 bp):
CTGGGCCTAAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATTAAT
Found at i:106269962 original size:41 final size:41
Alignment explanation
Indices: 106269917--106270154 Score: 442
Period size: 41 Copynumber: 5.8 Consensus size: 41
106269907 TGATTCAGTA
106269917 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106269958 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106269999 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106270040 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106270081 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
* *
106270122 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTG
106270155 TATTACATTC
Statistics
Matches: 194, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
40 2 0.01
41 192 0.99
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:106277614 original size:41 final size:41
Alignment explanation
Indices: 106277569--106277799 Score: 388
Period size: 41 Copynumber: 5.8 Consensus size: 41
106277559 TGATTCAGTA
106277569 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106277610 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106277651 CACCGGCATTAAGCCTGCTAGACAT-TAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106277691 CACCGGCATTAAGCCTGCTAGAC-T-TAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106277730 CACCGGCATTAAGCCTGCTAGAC-TATAGTCTG-AAT-TAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
*
106277768 CACCGGCATTAAGCCTGCTAGACTTA-AGTCTG
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTG
106277800 TATTACATTC
Statistics
Matches: 187, Mismatches: 0, Indels: 9
0.95 0.00 0.05
Matches are distributed among these distances:
38 32 0.17
39 45 0.24
40 47 0.25
41 63 0.34
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:106277752 original size:79 final size:80
Alignment explanation
Indices: 106277569--106277799 Score: 391
Period size: 79 Copynumber: 2.9 Consensus size: 80
106277559 TGATTCAGTA
106277569 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGAC
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGAC
106277633 ATATAGTCTGAAATGTAT
65 -T-TAGTCTGAAATGTAT
106277651 CACCGGCATTAAGCCTGCTAGACAT-TAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACT
106277715 TAGTCTGAAATGTAT
66 TAGTCTGAAATGTAT
106277730 CACCGGCATTAAGCCTGCTAGAC-TATAGTCTG-AAT-TATCACCGGCATTAAGCCTGCTAGACT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACT
106277792 TAAGTCTG
66 T-AGTCTG
106277800 TATTACATTC
Statistics
Matches: 146, Mismatches: 0, Indels: 10
0.94 0.00 0.06
Matches are distributed among these distances:
77 28 0.19
78 10 0.07
79 45 0.31
80 1 0.01
81 40 0.27
82 22 0.15
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (80 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACT
TAGTCTGAAATGTAT
Found at i:106287888 original size:40 final size:41
Alignment explanation
Indices: 106287841--106288075 Score: 399
Period size: 40 Copynumber: 5.8 Consensus size: 41
106287831 TGATTCAGTA
106287841 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA-
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106287881 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106287922 CACC-GCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
106287962 CACCGGCATTAAGCCTGCTAGAC-TAATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACAT-ATAGTCTGAAATGTAT
106288003 CACC-GCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
* *
106288043 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTG
106288076 TATTACATTC
Statistics
Matches: 187, Mismatches: 2, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
39 2 0.01
40 116 0.62
41 69 0.37
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:106287991 original size:81 final size:81
Alignment explanation
Indices: 106287852--106288075 Score: 409
Period size: 81 Copynumber: 2.8 Consensus size: 81
106287842 ACCGGCACTT
106287852 AGCCTGCTAGACATATAGTCTGAAATGTA-CACCGGCATTAAGCCTGCTAGAC-ATATAGTCTGA
1 AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACTA-ATAGTCTGA
106287915 AATGTATCACCGCATTA
65 AATGTATCACCGCATTA
106287932 AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACTAATAGTCTGAA
1 AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACTAATAGTCTGAA
106287997 ATGTATCACCGCATTA
66 ATGTATCACCGCATTA
106288013 AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACTTAA-AGTCTG
1 AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGAC-TAATAGTCTG
106288076 TATTACATTC
Statistics
Matches: 141, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
80 29 0.21
81 108 0.77
82 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (81 bp):
AGCCTGCTAGACATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACTAATAGTCTGAA
ATGTATCACCGCATTA
Found at i:106289188 original size:13 final size:13
Alignment explanation
Indices: 106289170--106289195 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106289160 CGTAAAAATT
106289170 ATCAAAAACTAAA
1 ATCAAAAACTAAA
106289183 ATCAAAAACTAAA
1 ATCAAAAACTAAA
106289196 CCTTGATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
ATCAAAAACTAAA
Found at i:106293525 original size:14 final size:14
Alignment explanation
Indices: 106293482--106293529 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
106293472 AAGGGAAACC
106293482 GAATAAAGAAATCCAA
1 GAATAAA-AAATCC-A
* *
106293498 GATTAGAGAAATCCA
1 GAATA-AAAAATCCA
106293513 GAATAAAAAATCCA
1 GAATAAAAAATCCA
106293527 GAA
1 GAA
106293530 GAATAAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 11 0.41
15 5 0.19
16 10 0.37
17 1 0.04
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (14 bp):
GAATAAAAAATCCA
Found at i:106303281 original size:26 final size:26
Alignment explanation
Indices: 106303250--106303357 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
106303240 TGAAATGCCC
*
106303250 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
106303276 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
106303302 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
106303328 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
106303354 ATCA
1 ATCA
106303358 ATTTATACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:106305020 original size:23 final size:23
Alignment explanation
Indices: 106304950--106305020 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 23
106304940 CTATTTAAAA
106304950 ATAA-TAAAATATTAAAAATATTT
1 ATAATTAAAAT-TTAAAAATATTT
* * * *
106304973 TTATATCAAAATTTATATACT-TTT
1 ATA-ATTAAAATTTA-AAAATATTT
*
106304997 ATAATTAAAATTTAAAATTATTT
1 ATAATTAAAATTTAAAAATATTT
106305020 A
1 A
106305021 ATTTAAATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
22 3 0.08
23 16 0.44
24 9 0.25
25 8 0.22
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAATTAAAATTTAAAAATATTT
Found at i:106307303 original size:16 final size:15
Alignment explanation
Indices: 106307279--106307317 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
106307269 AATATATATA
106307279 AATATATATCTACAT
1 AATATATATCTACAT
*
106307294 AATATAATATTTACAT
1 AATAT-ATATCTACAT
*
106307310 AATGTATA
1 AATATATA
106307318 CATACTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (15 bp):
AATATATATCTACAT
Found at i:106307784 original size:26 final size:26
Alignment explanation
Indices: 106307751--106307858 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
106307741 TGATACAAAT
106307751 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
106307777 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106307803 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106307829 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106307855 TGAT
1 TGAT
106307859 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106310916 original size:21 final size:21
Alignment explanation
Indices: 106310902--106310979 Score: 81
Period size: 21 Copynumber: 3.8 Consensus size: 21
106310892 ATATTACAAG
106310902 ATATATACATAATATATAAAA
1 ATATATACATAATATATAAAA
* *
106310923 ATGTATACATAATATATAGAA
1 ATATATACATAATATATAAAA
* *
106310944 A-ATATA-AT-ATTTAAAAAGA
1 ATATATACATAATATATAAA-A
106310963 ATAATATACATAATATA
1 AT-ATATACATAATATA
106310980 AGAGTATTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
18 6 0.13
19 4 0.09
20 4 0.09
21 25 0.56
22 2 0.04
23 4 0.09
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
ATATATACATAATATATAAAA
Found at i:106310930 original size:59 final size:62
Alignment explanation
Indices: 106310861--106310979 Score: 156
Period size: 59 Copynumber: 2.0 Consensus size: 62
106310851 TATAGTATCC
* * *
106310861 AAAATATATACATGATATATATAAAAGTACAATA-TT-ACAAG-AT-ATATACATAATATATA
1 AAAATATATACATAATATATAGAAAA-TACAATATTTAAAAAGAATAATATACATAATATATA
* *
106310920 AAAATGTATACATAATATATAGAAAATATAATATTTAAAAAGAATAATATACATAATATA
1 AAAATATATACATAATATATAGAAAATACAATATTTAAAAAGAATAATATACATAATATA
106310980 AGAGTATTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
58 6 0.12
59 25 0.49
60 4 0.08
61 2 0.04
62 14 0.27
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (62 bp):
AAAATATATACATAATATATAGAAAATACAATATTTAAAAAGAATAATATACATAATATATA
Found at i:106310947 original size:11 final size:11
Alignment explanation
Indices: 106310891--106310949 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
106310881 ATAAAAGTAC
106310891 AATAT-TACAA
1 AATATATACAA
* *
106310901 GATATATACAT
1 AATATATACAA
106310912 AATATATA-AA
1 AATATATACAA
* *
106310922 AATGTATACAT
1 AATATATACAA
*
106310933 AATATATAGAA
1 AATATATACAA
106310944 AATATA
1 AATATA
106310950 ATATTTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
10 12 0.32
11 26 0.68
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (11 bp):
AATATATACAA
Found at i:106311980 original size:18 final size:20
Alignment explanation
Indices: 106311944--106311980 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
106311934 TCTTGATCTC
*
106311944 ATTTCCTTGTTTTGTTTCTG
1 ATTTCCTTGTTTTGATTCTG
106311964 ATTT-CTTG-TTTGATTCT
1 ATTTCCTTGTTTTGATTCT
106311981 CGGTCTATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 4 0.25
20 4 0.25
ACGTcount: A:0.08, C:0.14, G:0.14, T:0.65
Consensus pattern (20 bp):
ATTTCCTTGTTTTGATTCTG
Found at i:106312874 original size:44 final size:44
Alignment explanation
Indices: 106312764--106312875 Score: 170
Period size: 44 Copynumber: 2.5 Consensus size: 44
106312754 TTCTCGATCA
* *
106312764 GCTCCACTACAACTTCAGGGAGACAAGACTTGCAACTTTGACCT
1 GCTCCACTGCAACTTCAGGGAGGCAAGACTTGCAACTTTGACCT
* * * *
106312808 GCTCCACTGCAACTTTAAGGAGGCCAGACTTGCAACTTTTACCT
1 GCTCCACTGCAACTTCAGGGAGGCAAGACTTGCAACTTTGACCT
106312852 GCTCCACTGCAACTTCAGGGAGGC
1 GCTCCACTGCAACTTCAGGGAGGC
106312876 TAAATCTGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGGCAAGACTTGCAACTTTGACCT
Found at i:106313098 original size:89 final size:88
Alignment explanation
Indices: 106312984--106313693 Score: 981
Period size: 89 Copynumber: 8.0 Consensus size: 88
106312974 TACAGACATT
* * * * *
106312984 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AATGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
106313048 GTTG-GTTTTTGAAAAGCATAAATTG
63 GTTGATTTTTTGAAAAGCATAAATTG
* * *
106313073 AAAAAC-GAAAATTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
106313137 TGATTTTTTTGAAAAGCAGAAATTG
65 TGA-TTTTTTGAAAAGCATAAATTG
* *
106313162 GAAAGCA-AAATTTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAA-TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
106313226 TGA-TTTTTGAAAAGCATAAATTA
65 TGATTTTTTGAAAAGCATAAATTG
*
106313249 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
106313314 GATTTTTTTGAAAAGCAGAAATTG
66 GA-TTTTTTGAAAAGCATAAATTG
* *
106313338 GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
106313403 GA-TTTTTGAAAAGCATAAATTA
66 GATTTTTTGAAAAGCATAAATTG
** *
106313425 AAAAATGGAAATTGAAAATACCTCAACGT-CTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
106313489 TGATTTTTTTGAAAAGCAAAAATTG
65 TGA-TTTTTTGAAAAGCATAAATTG
* ** *
106313514 GAAAGTAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
106313579 GA-TTTTTGAAAAGCATAAATTA
66 GATTTTTTGAAAAGCATAAATTG
* *
106313601 AAAAAAATGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACA-G-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
106313666 TTGATTTTTTTG-AAA-CATAAATTG
64 TTGA-TTTTTTGAAAAGCATAAATTG
106313690 AAAA
1 AAAA
106313694 TACCTCAGCA
Statistics
Matches: 558, Mismatches: 46, Indels: 34
0.87 0.07 0.05
Matches are distributed among these distances:
86 3 0.01
87 209 0.37
88 8 0.01
89 328 0.59
90 4 0.01
91 6 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAGCATAAATTG
Found at i:106313317 original size:176 final size:177
Alignment explanation
Indices: 106313023--106313680 Score: 1153
Period size: 176 Copynumber: 3.7 Consensus size: 177
106313013 GTGAGCCAAT
* * *
106313023 GCTCAACTCACTTCTCGCAATATGAGTTGGTTTTTGAAAAGCATAAATTGAAAAAC-GAAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAAATTG
* *
106313087 AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAA
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
106313152 GCAGAAATTGGAAAGCA-AAATTTGAAAATACCTCAGCGTGCCCTGAG
131 GCAGAAATTGGAAAGCAGAAA-TTGAAAATACCTCAGCGTGCCCTGAG
106313199 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAG-AAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAAATTG
106313263 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
106313328 GCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAG
131 GCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAG
* *
106313375 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAA-TGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAAATTG
* *
106313439 AAAATACCTCAACGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
* * *
106313504 GCAAAAATTGGAAAGTAGAAATTGAAAATACCTCAGCATGCCCTGAG
131 GCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAG
*
106313551 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAAATGAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACA-GAAAATT
106313616 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
65 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
106313681 CATAAATTGA
Statistics
Matches: 462, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
175 1 0.00
176 388 0.84
177 4 0.01
178 69 0.15
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (177 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAAATTG
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
GCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAG
Found at i:106313344 original size:14 final size:14
Alignment explanation
Indices: 106313325--106313351 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106313315 ATTTTTTTGA
106313325 AAAGCAGAAATTGG
1 AAAGCAGAAATTGG
106313339 AAAGCAGAAATTG
1 AAAGCAGAAATTG
106313352 AAAATACCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.26, T:0.15
Consensus pattern (14 bp):
AAAGCAGAAATTGG
Found at i:106313407 original size:265 final size:265
Alignment explanation
Indices: 106312984--106313680 Score: 1007
Period size: 265 Copynumber: 2.6 Consensus size: 265
106312974 TACAGACATT
* * * * *
106312984 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AATGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
106313048 GTTGGTTTTTGAAAAGCATAAATTGAAAAAC-GAAAATTGAAAATACCTCAGCGCGTCCTGAGGC
63 GTTGATTTTTGAAAAGCATAAATTGAAAAACAGAAAATTGAAAATACCTCAGCGTGTCCTGAGGC
* **
106313112 TCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAGCAGAAATT-GGAAA-GCAAAATTT
128 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAAAATG-AAAA-TT
*
106313175 GAAAATACCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
191 GAAAATACCTCAACGT-CTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
*
106313238 AGCATAAATTA
255 AGCAAAAATTA
*
106313249 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
106313314 GATTTTTTTGAAAAGCAGAAATTGGAAAGCAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCT
66 GA--TTTTTGAAAAGCATAAATTGAAAAACAGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
* *
106313378 CAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTAAAAAATGGAAATTGAA
129 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAAAATGAAAATTGAA
106313441 AATACCTCAACGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGC
194 AATACCTCAACGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGC
*
106313506 AAAAATTG
258 AAAAATTA
* ** *
106313514 GAAAGTAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
106313579 GATTTTTGAAAAGCATAAATTAAAAAAAATGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
66 GATTTTTGAAAAGCATAAATTGAAAAACA-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
106313644 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
130 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
106313681 CATAAATTGA
Statistics
Matches: 389, Mismatches: 30, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
262 3 0.01
263 126 0.32
264 7 0.02
265 243 0.62
266 1 0.00
267 9 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (265 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCATAAATTGAAAAACAGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAAAATGAAAATTGAAAA
TACCTCAACGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAAA
AATTA
Found at i:106313735 original size:75 final size:73
Alignment explanation
Indices: 106313611--106313749 Score: 197
Period size: 75 Copynumber: 1.9 Consensus size: 73
106313601 AAAAAAATGA
* ** * *
106313611 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGACCCAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTT
106313676 TGAAACAT
66 TGAAACAT
* *
106313684 AAATTGAAAATACCTCAGCATGTGACCCAATGCTCAATTCACCTCTAGCAATATGAATTGATTTT
1 AAATTGAAAATACCTCAGC--GTGACCCAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTT
106313749 T
64 T
106313750 GTTTGAAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 19 0.33
75 38 0.67
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCGTGACCCAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTT
TGAAACAT
Found at i:106314619 original size:42 final size:42
Alignment explanation
Indices: 106314545--106314660 Score: 164
Period size: 42 Copynumber: 2.8 Consensus size: 42
106314535 CTTCATTAAA
* * *
106314545 ACGCCC-TTTCGGGTTTTCATCC-TAATTTTTTTGTTAATCAAG
1 ACGCCCTTTTCGGGTTTTC-TCCTTGA-TCTTTTGCTAATCAAG
106314587 ACGCCCTTTTCGGGTTTTCTCCTTGATCTTTTGCTAATCAAG
1 ACGCCCTTTTCGGGTTTTCTCCTTGATCTTTTGCTAATCAAG
*
106314629 ACGCCCTTTTCGGGTTTTCACCTTGATCTTTT
1 ACGCCCTTTTCGGGTTTTCTCCTTGATCTTTT
106314661 TTTTTGGGCA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
42 54 0.79
43 14 0.21
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.45
Consensus pattern (42 bp):
ACGCCCTTTTCGGGTTTTCTCCTTGATCTTTTGCTAATCAAG
Found at i:106328561 original size:22 final size:22
Alignment explanation
Indices: 106328515--106328570 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
106328505 ACCTAACAAG
* * **
106328515 CCCAAAACAAAAATTAAAACTA
1 CCCAAACCCAAAATTAAAAAAA
106328537 CCCAAACCCAAAATTAAAAAAA
1 CCCAAACCCAAAATTAAAAAAA
* *
106328559 CCCTAGCCCAAA
1 CCCAAACCCAAA
106328571 CCTAAGAGGC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.57, C:0.30, G:0.02, T:0.11
Consensus pattern (22 bp):
CCCAAACCCAAAATTAAAAAAA
Found at i:106328653 original size:14 final size:14
Alignment explanation
Indices: 106328634--106328664 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
106328624 ACCACCTTCT
106328634 GCCACCTTTGCACC
1 GCCACCTTTGCACC
106328648 GCCACCTTTGCACC
1 GCCACCTTTGCACC
106328662 GCC
1 GCC
106328665 TTATCTCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.52, G:0.16, T:0.19
Consensus pattern (14 bp):
GCCACCTTTGCACC
Found at i:106329620 original size:3 final size:3
Alignment explanation
Indices: 106329614--106329677 Score: 60
Period size: 3 Copynumber: 21.0 Consensus size: 3
106329604 TATTATCGTC
* *
106329614 ATT ATT ATT CA-T ATT ATT ATT ATT ATGT TTT ATT ATTT ATG ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT AT-T ATT ATT A-TT ATT ATT ATT
*
106329661 ATT ATC ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT
106329678 CGTTTTATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
2 3 0.06
3 41 0.82
4 6 0.12
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:106329676 original size:23 final size:23
Alignment explanation
Indices: 106329627--106329673 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
106329617 ATTATTCATA
* * *
106329627 TTATTATTATTATGTTTTATTAT
1 TTATGATTATTATGTATCATTAT
106329650 TTATGATTATTAT-TATCATTAT
1 TTATGATTATTATGTATCATTAT
106329672 TT
1 TT
106329674 TATTCGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (23 bp):
TTATGATTATTATGTATCATTAT
Found at i:106329861 original size:3 final size:3
Alignment explanation
Indices: 106329853--106329990 Score: 95
Period size: 3 Copynumber: 46.0 Consensus size: 3
106329843 TAATTTAATA
* *
106329853 TAT TAT TATT TAT TAT TAT TAT CAT TAT TAT TAT T-T TAC TAT TACT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
106329899 TA- TATT TAT TAT CAT TAC TAT CAT TAC TAT TA- TGT TAC TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
106329943 TAT TCT CAC TAT T-T TCAT TAT TAT TAT TAC TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
106329988 TAT
1 TAT
106329991 CTACTACTAT
Statistics
Matches: 101, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
2 7 0.07
3 84 0.83
4 10 0.10
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:106330097 original size:3 final size:3
Alignment explanation
Indices: 106330089--106330223 Score: 55
Period size: 3 Copynumber: 44.3 Consensus size: 3
106330079 AATAGGGTTG
* *
106330089 TTA TTA TTA TTCC TTA TT- TTCCA TTA TTA TTA TTA TTA TTA TT- TAA
1 TTA TTA TTA TT-A TTA TTA TT--A TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
106330135 TTA CTA TTA CTA TTA TT- TCT- TTA CTA TTTA GTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA -TTA TTA TTA TTA TTA TTA
*** * * * *
106330179 CCC TTT TTA TTA TTT TTA TTA TTA TGGTA CTA TTA CTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA T
106330224 ACTTTCGCCT
Statistics
Matches: 97, Mismatches: 24, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
2 7 0.07
3 82 0.85
4 4 0.04
5 4 0.04
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:106330137 original size:20 final size:20
Alignment explanation
Indices: 106330114--106330162 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
106330104 ATTTTCCATT
* *
106330114 ATTATTATTATTATTATTTA
1 ATTACTATTACTATTATTTA
*
106330134 ATTACTATTACTATTATTTC
1 ATTACTATTACTATTATTTA
*
106330154 TTTACTATT
1 ATTACTATT
106330163 TAGTATATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTACTATTACTATTATTTA
Found at i:106330137 original size:23 final size:22
Alignment explanation
Indices: 106330089--106330152 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
106330079 AATAGGGTTG
* *
106330089 TTATTATTATTCCTTATTTTCCA
1 TTATTATTATT-ATTATTTTCAA
*
106330112 TTATTATTATTATTATTATTTAA
1 TTATTATTATTATTATT-TTCAA
* *
106330135 TTACTATTACTATTATTT
1 TTATTATTATTATTATTT
106330153 CTTTACTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 6 0.17
23 29 0.83
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATTATTATTATTATTTTCAA
Found at i:106334366 original size:12 final size:11
Alignment explanation
Indices: 106334338--106334371 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
106334328 AAACCCTATT
*
106334338 TTTTTCTTTTC
1 TTTTTCTTTCC
106334349 TTTTTCTTTCC
1 TTTTTCTTTCC
106334360 TTCTTTCTTTCC
1 TT-TTTCTTTCC
106334372 CCCACTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTCTTTCC
Found at i:106334455 original size:16 final size:17
Alignment explanation
Indices: 106334436--106334474 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
106334426 CTTTATTCAC
106334436 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
106334452 TTAATATAATTATAATA
1 TTAATATAATTATAATA
106334469 -TAATAT
1 TTAATAT
106334475 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:106335933 original size:33 final size:33
Alignment explanation
Indices: 106335891--106335963 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
106335881 ATGAAAACTG
106335891 TTTCCACTATTTTTCTCTCTCCCGACTGCTTTA
1 TTTCCACTATTTTTCTCTCTCCCGACTGCTTTA
* *
106335924 TTTCCACTATTTTTTTCTCTCCCGATTGCTTTA
1 TTTCCACTATTTTTCTCTCTCCCGACTGCTTTA
106335957 TTTCCAC
1 TTTCCAC
106335964 ATCAACAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.12, C:0.32, G:0.05, T:0.51
Consensus pattern (33 bp):
TTTCCACTATTTTTCTCTCTCCCGACTGCTTTA
Found at i:106340996 original size:15 final size:16
Alignment explanation
Indices: 106340976--106341008 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
106340966 ATTTTGTGTG
106340976 TTATTT-ATTTTATTT
1 TTATTTAATTTTATTT
106340991 TTATTTAATTTTATTT
1 TTATTTAATTTTATTT
106341007 TT
1 TT
106341009 CACAAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTAATTTTATTT
Found at i:106342784 original size:16 final size:16
Alignment explanation
Indices: 106342765--106342798 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
106342755 TTCAAAAATA
106342765 ATTC-AAATATATATAT
1 ATTCAAAATA-ATATAT
106342781 ATTCAAAATAATATAT
1 ATTCAAAATAATATAT
106342797 AT
1 AT
106342799 AAAAGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTCAAAATAATATAT
Found at i:106346874 original size:27 final size:28
Alignment explanation
Indices: 106346837--106346976 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
106346827 AGCATGGCTG
* *
106346837 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
106346863 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
106346891 CCAGA-ACAGATATATGTGGTAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
106346918 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
106346945 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
106346972 CCAGA
1 CCAGA
106346977 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:106347412 original size:16 final size:15
Alignment explanation
Indices: 106347391--106347420 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
106347381 AAAATACCGA
106347391 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
106347407 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
106347421 CCAATTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:106348626 original size:26 final size:26
Alignment explanation
Indices: 106348590--106348699 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
106348580 CATGAAATTC
*
106348590 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
106348616 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
106348642 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
106348668 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106348694 TTATCA
1 TTATCA
106348700 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:106353585 original size:16 final size:15
Alignment explanation
Indices: 106353563--106353600 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
106353553 TATTTCTAAT
106353563 GTATTATTATTACTA
1 GTATTATTATTACTA
*
106353578 GTTATTATTATTTCTA
1 G-TATTATTATTACTA
106353594 GTATTAT
1 GTATTAT
106353601 CACATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (15 bp):
GTATTATTATTACTA
Found at i:106353891 original size:21 final size:22
Alignment explanation
Indices: 106353867--106353923 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
106353857 ATTAATTAGT
106353867 TATATATTTTTATA-TATT-ATG
1 TATATATTTTT-TACTATTCATG
106353888 TATAT-TTCTTTTACTATTCCATG
1 TATATATT-TTTTACTATT-CATG
106353911 TATATATTTTTTA
1 TATATATTTTTTA
106353924 TTTCATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.13
21 12 0.39
23 13 0.42
24 2 0.06
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (22 bp):
TATATATTTTTTACTATTCATG
Found at i:106353926 original size:32 final size:29
Alignment explanation
Indices: 106353890--106353948 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 29
106353880 ATATTATGTA
106353890 TATTTC-TTTTACTATTCCATGTATATATTTTT
1 TATTTCATTTTA-TATT--ATGTAT-TATTTTT
106353922 TATTTCATTTTATATTATGTATTATTT
1 TATTTCATTTTATATTATGTATTATTT
106353949 GGTTTACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.19
30 6 0.23
32 10 0.38
33 5 0.19
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.64
Consensus pattern (29 bp):
TATTTCATTTTATATTATGTATTATTTTT
Found at i:106353974 original size:3 final size:3
Alignment explanation
Indices: 106353966--106354001 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
106353956 ATACATCTTT
*
106353966 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106354002 GAGATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:106355495 original size:26 final size:26
Alignment explanation
Indices: 106355466--106355521 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
106355456 TGATACAAAT
106355466 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106355492 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106355518 TGAT
1 TGAT
106355522 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.