Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 325 of 332
Found at i:106657983 original size:21 final size:23
Alignment explanation
Indices: 106657959--106658000 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
106657949 CACTATTACT
106657959 TTGATTTTA-T-TTATTGTTTAA
1 TTGATTTTATTGTTATTGTTTAA
106657980 TTGATTTTATTGTTATTGTTT
1 TTGATTTTATTGTTATTGTTT
106658001 GGATATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 1 0.05
23 9 0.47
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (23 bp):
TTGATTTTATTGTTATTGTTTAA
Found at i:106658789 original size:20 final size:20
Alignment explanation
Indices: 106658764--106658801 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
106658754 TAGCCTACGA
106658764 TAATTCATAAATAGTTTAGG
1 TAATTCATAAATAGTTTAGG
*
106658784 TAATTCATAAATCGTTTA
1 TAATTCATAAATAGTTTA
106658802 AAGTATGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
TAATTCATAAATAGTTTAGG
Found at i:106664111 original size:13 final size:13
Alignment explanation
Indices: 106664064--106664118 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
106664054 TGTTAAACAA
106664064 TAAATGATATTTT
1 TAAATGATATTTT
* *
106664077 TAAATAGTAAATACTAT
1 TAAAT-G---ATATTTT
106664094 TAAATGATATTTT
1 TAAATGATATTTT
106664107 TAAATGATATTT
1 TAAATGATATTT
106664119 GATTCTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 22 0.65
14 1 0.03
16 1 0.03
17 10 0.29
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (13 bp):
TAAATGATATTTT
Found at i:106666730 original size:23 final size:23
Alignment explanation
Indices: 106666699--106666751 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
106666689 TATATTTTAG
*
106666699 ATATTAAAATAA-AATAAATTTCA
1 ATATAAAAATAATAATAAA-TTCA
* *
106666722 ATATAAAAATAATAGTATATTCA
1 ATATAAAAATAATAATAAATTCA
106666745 ATATAAA
1 ATATAAA
106666752 TATTATACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (23 bp):
ATATAAAAATAATAATAAATTCA
Found at i:106675794 original size:18 final size:21
Alignment explanation
Indices: 106675757--106675797 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
106675747 ATGAAATGTT
106675757 TTTAATATATTTTATATAAAA
1 TTTAATATATTTTATATAAAA
106675778 TTTAA-ATATTTTATA-AAAA
1 TTTAATATATTTTATATAAAA
106675797 T
1 T
106675798 AATAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTAATATATTTTATATAAAA
Found at i:106677675 original size:21 final size:21
Alignment explanation
Indices: 106677642--106677684 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
106677632 TTAGACGGAT
* *
106677642 TAATTTATGAATC-AATTGAAA
1 TAATTAATCAATCTAATT-AAA
106677663 TAATTAATCAATCTAATTAAA
1 TAATTAATCAATCTAATTAAA
106677684 T
1 T
106677685 CGGACGGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (21 bp):
TAATTAATCAATCTAATTAAA
Found at i:106678854 original size:19 final size:19
Alignment explanation
Indices: 106678809--106678856 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
106678799 ATATCCAAAC
*
106678809 AATAACAACAAAATAGTGA
1 AATAACAACAAAACAGTGA
* *
106678828 AATGACAACAAAACATTGA
1 AATAACAACAAAACAGTGA
*
106678847 TATAACAACA
1 AATAACAACA
106678857 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.60, C:0.15, G:0.08, T:0.17
Consensus pattern (19 bp):
AATAACAACAAAACAGTGA
Found at i:106680130 original size:12 final size:12
Alignment explanation
Indices: 106680115--106680139 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
106680105 AAAAGTTTTC
106680115 ATTTAAGTTATT
1 ATTTAAGTTATT
106680127 ATTTAAGTTATT
1 ATTTAAGTTATT
106680139 A
1 A
106680140 GACTGTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTTAAGTTATT
Found at i:106693415 original size:22 final size:23
Alignment explanation
Indices: 106693370--106693415 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
106693360 AGTACATGCT
106693370 AAACGATGTGACCTCAATGAAAAA
1 AAACGATGTGACCT-AATGAAAAA
*
106693394 AAACGATGTGACCT-TTGAAAAA
1 AAACGATGTGACCTAATGAAAAA
106693416 GAAATCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
24 14 0.67
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (23 bp):
AAACGATGTGACCTAATGAAAAA
Found at i:106695074 original size:10 final size:9
Alignment explanation
Indices: 106695054--106695094 Score: 55
Period size: 10 Copynumber: 4.3 Consensus size: 9
106695044 TAGACATGCT
106695054 AATAAATAA
1 AATAAATAA
106695063 AATAACATAA
1 AATAA-ATAA
106695073 AATAAAGTAA
1 AATAAA-TAA
*
106695083 AATAAACAA
1 AATAAATAA
106695092 AAT
1 AAT
106695095 TTATTTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 11 0.38
10 18 0.62
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (9 bp):
AATAAATAA
Found at i:106695297 original size:9 final size:9
Alignment explanation
Indices: 106695274--106695311 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
106695264 TCCGTGGTAG
106695274 AGAAG-AAA
1 AGAAGAAAA
106695282 A-AAGAAAA
1 AGAAGAAAA
106695290 AGAAGAAAA
1 AGAAGAAAA
*
106695299 AGAAGAGAA
1 AGAAGAAAA
106695308 AGAA
1 AGAA
106695312 CAAAGGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
7 3 0.11
8 5 0.19
9 19 0.70
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:106695302 original size:25 final size:25
Alignment explanation
Indices: 106695274--106695321 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
106695264 TCCGTGGTAG
106695274 AGAAGAAAAAAGAA-AAAGAAGAAAA
1 AGAAG-AAAAAGAACAAAGAAGAAAA
* *
106695299 AGAAGAGAAAGAACAAAGGAGAA
1 AGAAGAAAAAGAACAAAGAAGAA
106695322 GGAGAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (25 bp):
AGAAGAAAAAGAACAAAGAAGAAAA
Found at i:106695327 original size:25 final size:24
Alignment explanation
Indices: 106695272--106695332 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
106695262 AATCCGTGGT
*
106695272 AGAGAAGAAAAAAGAAAAAGAAGAA
1 AGAGAAG-AGAAAGAAAAAGAAGAA
* *
106695297 AAAGAAGAGAAAGAACAAAGGAGAA
1 AGAGAAGAGAAAGAA-AAAGAAGAA
*
106695322 GGAGAA-AGAAA
1 AGAGAAGAGAAA
106695333 AGTAGGAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.70, C:0.02, G:0.28, T:0.00
Consensus pattern (24 bp):
AGAGAAGAGAAAGAAAAAGAAGAA
Found at i:106702502 original size:22 final size:21
Alignment explanation
Indices: 106702465--106702509 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
106702455 AGGGATCGAG
106702465 TGCATTAAAGTATTTTTTTTAT
1 TGCATTAAAG-ATTTTTTTTAT
106702487 TGCATTTAAAG-TTTTTTTTAT
1 TGCA-TTAAAGATTTTTTTTAT
106702508 TG
1 TG
106702510 TGTTTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 12 0.55
22 4 0.18
23 6 0.27
ACGTcount: A:0.24, C:0.04, G:0.11, T:0.60
Consensus pattern (21 bp):
TGCATTAAAGATTTTTTTTAT
Found at i:106714375 original size:13 final size:14
Alignment explanation
Indices: 106714350--106714378 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
106714340 AAAGGGGAAT
106714350 GAAGAACAAAATGG
1 GAAGAACAAAATGG
106714364 GAAGAA-AAAATGG
1 GAAGAACAAAATGG
106714377 GA
1 GA
106714379 GTGAAGGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.03, G:0.31, T:0.07
Consensus pattern (14 bp):
GAAGAACAAAATGG
Found at i:106714614 original size:2 final size:2
Alignment explanation
Indices: 106714607--106714637 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
106714597 AATAAGTTAA
106714607 AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
106714638 GATGCGTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:106718502 original size:2 final size:2
Alignment explanation
Indices: 106718495--106718521 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
106718485 TTTGAATTAT
106718495 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
106718522 TTTTTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:106724016 original size:57 final size:56
Alignment explanation
Indices: 106723944--106724067 Score: 193
Period size: 52 Copynumber: 2.3 Consensus size: 56
106723934 AAGCCATCTA
*
106723944 AACTCTTAGAAATTAAGTTAATTACAGAAATGCTATACTTAGGCAATTAAAGAGGCG
1 AACTCTTAGAAATTAA-TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
*
106724001 AACTCTTAG--A--AATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGTG
1 AACTCTTAGAAATTAATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
106724053 AACTCTTAGAAATTA
1 AACTCTTAGAAATTA
106724068 GTGACTTTAT
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
52 47 0.77
53 2 0.03
54 1 0.02
55 1 0.02
56 1 0.02
57 9 0.15
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (56 bp):
AACTCTTAGAAATTAATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
Found at i:106724029 original size:52 final size:52
Alignment explanation
Indices: 106723961--106724067 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
106723951 AGAAATTAAG
*
106723961 TTAATTACAGAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
1 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
*
106724013 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGTGAACTCTTAGAAA
1 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
106724065 TTA
1 TTA
106724068 GTGACTTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (52 bp):
TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
Found at i:106724147 original size:40 final size:40
Alignment explanation
Indices: 106724069--106724146 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 40
106724059 TAGAAATTAG
106724069 TGACTTTATTCAAGTGAGTGCTTCCCCCCCTCCCCCCCTC
1 TGACTTTATTCAAGTGAGTGCTTCCCCCCCTCCCCCCCTC
*
106724109 TGACTTTATTCAAAAGTGAGTGCTT-CCCCCGTCCCCCC
1 TGACTTTATTC--AAGTGAGTGCTTCCCCCCCTCCCCCC
106724147 TTTTACCTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 11 0.31
41 12 0.34
42 12 0.34
ACGTcount: A:0.15, C:0.41, G:0.14, T:0.29
Consensus pattern (40 bp):
TGACTTTATTCAAGTGAGTGCTTCCCCCCCTCCCCCCCTC
Found at i:106739713 original size:2 final size:2
Alignment explanation
Indices: 106739706--106739749 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
106739696 ATTATTGCTC
106739706 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
106739748 CT
1 CT
106739750 TTTATCTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:106748550 original size:18 final size:18
Alignment explanation
Indices: 106748527--106748563 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
106748517 AAGACTTTAA
106748527 GAATAAGCAGCTTGTTAT
1 GAATAAGCAGCTTGTTAT
106748545 GAATAAGCAGCTTGTTAT
1 GAATAAGCAGCTTGTTAT
106748563 G
1 G
106748564 TATGGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (18 bp):
GAATAAGCAGCTTGTTAT
Found at i:106749040 original size:21 final size:21
Alignment explanation
Indices: 106749001--106749040 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
106748991 AGCGGTGGCG
* *
106749001 GTGAGATTAGATACTATGACA
1 GTGAGATTAGAAACAATGACA
106749022 GTGAGATTAGAAACAATGA
1 GTGAGATTAGAAACAATGA
106749041 TGTGGTATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.25
Consensus pattern (21 bp):
GTGAGATTAGAAACAATGACA
Found at i:106749293 original size:35 final size:35
Alignment explanation
Indices: 106749227--106749302 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
106749217 AATAAAATTT
*
106749227 AAATATTTTTAAATTATATTCATAATAAAAT-ATCA
1 AAATATTTTCAAATTATATTCATAATAAAATAAT-A
* *
106749262 AAATATTTTACAAATTATATTTA-AATCAAATAATA
1 AAATATTTT-CAAATTATATTCATAATAAAATAATA
106749297 AAATAT
1 AAATAT
106749303 AAATTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 23 0.64
36 13 0.36
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (35 bp):
AAATATTTTCAAATTATATTCATAATAAAATAATA
Found at i:106749368 original size:16 final size:18
Alignment explanation
Indices: 106749337--106749369 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
106749327 TTTATAAATA
106749337 AAAATTATATATTTATTG
1 AAAATTATATATTTATTG
106749355 AAAATTA-A-ATTTATT
1 AAAATTATATATTTATT
106749370 AAATAATGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (18 bp):
AAAATTATATATTTATTG
Found at i:106753484 original size:311 final size:311
Alignment explanation
Indices: 106752921--106753545 Score: 1250
Period size: 311 Copynumber: 2.0 Consensus size: 311
106752911 CATATTTTAT
106752921 TTAGGAATAAATTTCTAAAAATAAAAATTTAAAAATTAAATTTTAAATTTGTAAAAAATAATATT
1 TTAGGAATAAATTTCTAAAAATAAAAATTTAAAAATTAAATTTTAAATTTGTAAAAAATAATATT
106752986 TCAAATCAATTTGTCAAAAATAAAATATTTTATTGAAAATGTATCAAATATTAACTTATCGAAGG
66 TCAAATCAATTTGTCAAAAATAAAATATTTTATTGAAAATGTATCAAATATTAACTTATCGAAGG
106753051 CTTTACTCTTTTTTTTTAATTTTCATTAGTTCTCTAGGTTTTATTTTTAAAAATTTTAATTAAAC
131 CTTTACTCTTTTTTTTTAATTTTCATTAGTTCTCTAGGTTTTATTTTTAAAAATTTTAATTAAAC
106753116 CCTTTTTTTGAAATAGTTTAATTAACCCCAAAATTTAATGTCAAGATTTGCCACAATAATATGTT
196 CCTTTTTTTGAAATAGTTTAATTAACCCCAAAATTTAATGTCAAGATTTGCCACAATAATATGTT
106753181 GTTGTCAATTGAGCCTATAGTTAATGGCAAAAGGACTTCCACTGAATAAAG
261 GTTGTCAATTGAGCCTATAGTTAATGGCAAAAGGACTTCCACTGAATAAAG
106753232 TTAGGAATAAATTTCTAAAAATAAAAATTTAAAAATTAAATTTTAAATTTGTAAAAAATAATATT
1 TTAGGAATAAATTTCTAAAAATAAAAATTTAAAAATTAAATTTTAAATTTGTAAAAAATAATATT
106753297 TCAAATCAATTTGTCAAAAATAAAATATTTTATTGAAAATGTATCAAATATTAACTTATCGAAGG
66 TCAAATCAATTTGTCAAAAATAAAATATTTTATTGAAAATGTATCAAATATTAACTTATCGAAGG
106753362 CTTTACTCTTTTTTTTTAATTTTCATTAGTTCTCTAGGTTTTATTTTTAAAAATTTTAATTAAAC
131 CTTTACTCTTTTTTTTTAATTTTCATTAGTTCTCTAGGTTTTATTTTTAAAAATTTTAATTAAAC
106753427 CCTTTTTTTGAAATAGTTTAATTAACCCCAAAATTTAATGTCAAGATTTGCCACAATAATATGTT
196 CCTTTTTTTGAAATAGTTTAATTAACCCCAAAATTTAATGTCAAGATTTGCCACAATAATATGTT
106753492 GTTGTCAATTGAGCCTATAGTTAATGGCAAAAGGACTTCCACTGAATAAAG
261 GTTGTCAATTGAGCCTATAGTTAATGGCAAAAGGACTTCCACTGAATAAAG
106753543 TTA
1 TTA
106753546 TGTTTGACAT
Statistics
Matches: 314, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
311 314 1.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (311 bp):
TTAGGAATAAATTTCTAAAAATAAAAATTTAAAAATTAAATTTTAAATTTGTAAAAAATAATATT
TCAAATCAATTTGTCAAAAATAAAATATTTTATTGAAAATGTATCAAATATTAACTTATCGAAGG
CTTTACTCTTTTTTTTTAATTTTCATTAGTTCTCTAGGTTTTATTTTTAAAAATTTTAATTAAAC
CCTTTTTTTGAAATAGTTTAATTAACCCCAAAATTTAATGTCAAGATTTGCCACAATAATATGTT
GTTGTCAATTGAGCCTATAGTTAATGGCAAAAGGACTTCCACTGAATAAAG
Found at i:106759837 original size:48 final size:48
Alignment explanation
Indices: 106759781--106759877 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
106759771 AATTACAAGA
106759781 TAGTATAATGGTGTAATTGCACTTTGTCCACTAAAATTTTCATTCATT
1 TAGTATAATGGTGTAATTGCACTTTGTCCACTAAAATTTTCATTCATT
106759829 TAGTATAATGGTGTAATTGCACTTTGTCCACTAAAATTTTCATTCATT
1 TAGTATAATGGTGTAATTGCACTTTGTCCACTAAAATTTTCATTCATT
106759877 T
1 T
106759878 GTAACCCCTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.44
Consensus pattern (48 bp):
TAGTATAATGGTGTAATTGCACTTTGTCCACTAAAATTTTCATTCATT
Found at i:106761846 original size:21 final size:21
Alignment explanation
Indices: 106761822--106761862 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
106761812 TCAAAACAAC
106761822 ATAGTTTT-ACCTTTTAACTTA
1 ATAGTTTTGA-CTTTTAACTTA
106761843 ATAGTTTTGACTTTTAACTT
1 ATAGTTTTGACTTTTAACTT
106761863 TAGAAAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.54
Consensus pattern (21 bp):
ATAGTTTTGACTTTTAACTTA
Found at i:106761897 original size:70 final size:67
Alignment explanation
Indices: 106761774--106761906 Score: 176
Period size: 70 Copynumber: 1.9 Consensus size: 67
106761764 ATAAACAATA
* * *
106761774 TAATTGTTTTGCCTTTTAACTTAATAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAA
1 TAATAGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAA
106761839 CT
66 CT
** * *
106761841 TAATAGTTTTGACTTTTAACTTTAGAAAATGTAAACATTTATCAAAATGACGTAGTTTTGCCTTT
1 TAATAGTTTTGACTTTTAAC-TTA-AAAA-GTAAACATTTATCAAAACAACATAGTTTTACCTTT
106761906 T
63 T
106761907 CTTATTCGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
67 18 0.32
68 3 0.05
69 3 0.05
70 32 0.57
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (67 bp):
TAATAGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAA
CT
Found at i:106765682 original size:48 final size:47
Alignment explanation
Indices: 106765625--106765718 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 47
106765615 GTTTTGTAAG
106765625 ATTGGTTTTGGGTACAACTTTTTCTTCTTCTTCTTCTTTTCCCTGAA
1 ATTGGTTTTGGGTACAACTTTTTCTTCTTCTTCTTCTTTTCCCTGAA
** * *
106765672 ATTGGTTTTTGGGTACGGCTTTTTTTTCTTCTTCTTCTTTTCGCTGA
1 ATTGG-TTTTGGGTACAACTTTTTCTTCTTCTTCTTCTTTTCCCTGA
106765719 CTGATCTGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 5 0.12
48 37 0.88
ACGTcount: A:0.10, C:0.19, G:0.16, T:0.55
Consensus pattern (47 bp):
ATTGGTTTTGGGTACAACTTTTTCTTCTTCTTCTTCTTTTCCCTGAA
Found at i:106766445 original size:18 final size:18
Alignment explanation
Indices: 106766400--106766463 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
106766390 ATGAAATAAG
106766400 TTATATGTTGTTGTTC-T
1 TTATATGTTGTTGTTCAT
*
106766417 TTAGCGA-GTTGTTGTTCAT
1 TTA--TATGTTGTTGTTCAT
106766436 TTATATGTTGTTGTTCAT
1 TTATATGTTGTTGTTCAT
*
106766454 TTATAAGTTG
1 TTATATGTTG
106766464 AAGTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.17, C:0.06, G:0.20, T:0.56
Consensus pattern (18 bp):
TTATATGTTGTTGTTCAT
Found at i:106768350 original size:16 final size:16
Alignment explanation
Indices: 106768331--106768374 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
106768321 TAAAAATAAT
106768331 TTAAAATATAAATTTA
1 TTAAAATATAAATTTA
106768347 TTAATATATATAAATTTA
1 TTAA-A-ATATAAATTTA
*
106768365 TTAATATATA
1 TTAAAATATA
106768375 TGTAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 15 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAATATAAATTTA
Found at i:106768357 original size:18 final size:18
Alignment explanation
Indices: 106768336--106768375 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
106768326 ATAATTTAAA
106768336 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
106768354 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
106768372 ATAT
1 ATAT
106768376 GTAAAAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:106770646 original size:59 final size:61
Alignment explanation
Indices: 106770544--106770657 Score: 146
Period size: 59 Copynumber: 1.9 Consensus size: 61
106770534 CAGAGTTTAA
*
106770544 CTTGGACAAAAAAAATAGTTCAAGCCCCAATGAGAAAACAATTGC-ACAGTTCAGGATCTAG
1 CTTGGACAAAAAAAATAGTTCAAGCCCCAATAAGAAAACAATTGCTA-AGTTCAGGATCTAG
* * *
106770605 CTTGGAC-AAAAAAATA-TTCAAGTCTCAA-AATGAAAATAATTGCTAAGTTCAGG
1 CTTGGACAAAAAAAATAGTTCAAGCCCCAATAA-GAAAACAATTGCTAAGTTCAGG
106770658 CCCCAATAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
58 1 0.02
59 29 0.62
60 10 0.21
61 7 0.15
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (61 bp):
CTTGGACAAAAAAAATAGTTCAAGCCCCAATAAGAAAACAATTGCTAAGTTCAGGATCTAG
Found at i:106771793 original size:24 final size:23
Alignment explanation
Indices: 106771759--106771819 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 23
106771749 GTATCATTTT
*
106771759 TATTTGTTTTAATATTTTTAAATA
1 TATTTGATTTAATATTTTTAAA-A
106771783 TATTTGATTTATTATATTTTTAAAA
1 TATTTGATTTA--ATATTTTTAAAA
* *
106771808 TTTTTTATTTAA
1 TATTTGATTTAA
106771820 CGAAATAAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.03
24 10 0.31
25 10 0.31
26 11 0.34
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (23 bp):
TATTTGATTTAATATTTTTAAAA
Found at i:106778462 original size:20 final size:21
Alignment explanation
Indices: 106778424--106778462 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
106778414 AGCATGACAA
*
106778424 TTCAGATTTTTCCTTTTGATT
1 TTCAGATTTTTCCTCTTGATT
*
106778445 TTCAGCTTTTT-CTCTTGA
1 TTCAGATTTTTCCTCTTGA
106778463 AAAATTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.18, G:0.10, T:0.59
Consensus pattern (21 bp):
TTCAGATTTTTCCTCTTGATT
Found at i:106779085 original size:2 final size:2
Alignment explanation
Indices: 106779078--106779116 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
106779068 ATTTACATCT
106779078 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
106779117 TATGATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:106783053 original size:19 final size:19
Alignment explanation
Indices: 106783029--106783065 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
106783019 TTTAAATAAT
*
106783029 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
106783048 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
106783066 TAAAATAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:106783109 original size:24 final size:22
Alignment explanation
Indices: 106783076--106783119 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
106783066 TAAAATAGTA
106783076 TAAAAGATGTATAACTAATAATGT
1 TAAAAGATGTAT-AC-AATAATGT
*
106783100 TAAAATATGTATACAATAAT
1 TAAAAGATGTATACAATAAT
106783120 ATATATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (22 bp):
TAAAAGATGTATACAATAATGT
Found at i:106783176 original size:15 final size:15
Alignment explanation
Indices: 106783156--106783188 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
106783146 TAGGTACATA
106783156 ATATATACGA-AATAT
1 ATATATAC-ATAATAT
106783171 ATATATACATAATAT
1 ATATATACATAATAT
106783186 ATA
1 ATA
106783189 CATAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.06
15 16 0.94
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (15 bp):
ATATATACATAATAT
Found at i:106783185 original size:11 final size:11
Alignment explanation
Indices: 106783150--106783197 Score: 60
Period size: 11 Copynumber: 4.0 Consensus size: 11
106783140 AAAACATAGG
106783150 TACATAATATA
1 TACATAATATA
106783161 TACGAAATATATATA
1 TAC---ATA-ATATA
106783176 TACATAATATA
1 TACATAATATA
106783187 TACATAATATA
1 TACATAATATA
106783198 ATATTAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 19 0.58
12 3 0.09
14 3 0.09
15 8 0.24
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.35
Consensus pattern (11 bp):
TACATAATATA
Found at i:106783196 original size:24 final size:26
Alignment explanation
Indices: 106783150--106783219 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
106783140 AAAACATAGG
106783150 TACATAATATATACGA-AATAT-ATAT
1 TACATAATATATAC-ATAATATAATAT
106783175 ATACATAATATATACATAATATAATAT
1 -TACATAATATATACATAATATAATAT
*
106783202 TA-A-AATATTTACATAATA
1 TACATAATATATACATAATA
106783220 CATAAATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
24 14 0.34
25 2 0.05
26 21 0.51
27 4 0.10
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.37
Consensus pattern (26 bp):
TACATAATATATACATAATATAATAT
Found at i:106783274 original size:12 final size:12
Alignment explanation
Indices: 106783257--106783307 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
106783247 GTAATAATGT
*
106783257 TACATAAGTATA
1 TACATAAATATA
106783269 TACATAAATATA
1 TACATAAATATA
* *
106783281 TTA-AAAAACATA
1 -TACATAAATATA
106783293 TACATAAAATATA
1 TACAT-AAATATA
106783306 TA
1 TA
106783308 TATACACTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.06
12 19 0.61
13 10 0.32
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (12 bp):
TACATAAATATA
Found at i:106789597 original size:23 final size:23
Alignment explanation
Indices: 106789567--106789615 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
106789557 TACAAACATG
106789567 ACAATTGAGTCTTAGCTTGATTA
1 ACAATTGAGTCTTAGCTTGATTA
106789590 ACAATTGAGTCTTAGCTTGATTA
1 ACAATTGAGTCTTAGCTTGATTA
106789613 ACA
1 ACA
106789616 TGAGCAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (23 bp):
ACAATTGAGTCTTAGCTTGATTA
Found at i:106791477 original size:20 final size:20
Alignment explanation
Indices: 106791440--106791478 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
106791430 TTATTGCTCT
*
106791440 TCTTTATTTTCATATTTTTG
1 TCTTTATTTTAATATTTTTG
106791460 TCTTTATTATTAAT-TTTTT
1 TCTTTATT-TTAATATTTTT
106791479 AAACAATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (20 bp):
TCTTTATTTTAATATTTTTG
Found at i:106792478 original size:31 final size:31
Alignment explanation
Indices: 106792409--106792470 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
106792399 ATTAACAGCC
* *
106792409 CAATGATTTAAATGAACACTTTCAAATAATT
1 CAATGACTTAAATGAAAACTTTCAAATAATT
*
106792440 CAATGACTTAAATGAAAACTTTTAAATAATT
1 CAATGACTTAAATGAAAACTTTCAAATAATT
106792471 TAGTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.35
Consensus pattern (31 bp):
CAATGACTTAAATGAAAACTTTCAAATAATT
Found at i:106793025 original size:31 final size:31
Alignment explanation
Indices: 106792959--106793025 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
106792949 TTAGTCCTTG
* * * *
106792959 AACTTAGCAATTATTCTCATATTAGAACCTG
1 AACTTAGCAATTATTCTCACACTAGAACATA
**
106792990 AACTTAGCAATTATTCTCACACTAGGGCATA
1 AACTTAGCAATTATTCTCACACTAGAACATA
106793021 AACTT
1 AACTT
106793026 TAAAGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (31 bp):
AACTTAGCAATTATTCTCACACTAGAACATA
Found at i:106794343 original size:3 final size:3
Alignment explanation
Indices: 106794335--106794360 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
106794325 ACTTAGTTGC
106794335 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
106794361 TAGTTTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:106801852 original size:28 final size:26
Alignment explanation
Indices: 106801821--106801876 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
106801811 GATTTAGTTT
106801821 TTATTGATGGAATAATTTTTAGAATTA
1 TTATT-ATGGAATAATTTTTAGAATTA
106801848 --ATTATGGAATAATTTTTAGAATTAA
1 TTATTATGGAATAATTTTTAGAATT-A
106801873 TTAT
1 TTAT
106801877 CTTTATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
24 20 0.77
25 4 0.15
27 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (26 bp):
TTATTATGGAATAATTTTTAGAATTA
Found at i:106801855 original size:24 final size:24
Alignment explanation
Indices: 106801827--106801876 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
106801817 GTTTTTATTG
106801827 ATGGAATAATTTTTAGAATTAATT
1 ATGGAATAATTTTTAGAATTAATT
106801851 ATGGAATAATTTTTAGAATTAATT
1 ATGGAATAATTTTTAGAATTAATT
106801875 AT
1 AT
106801877 CTTTATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (24 bp):
ATGGAATAATTTTTAGAATTAATT
Found at i:106802213 original size:21 final size:22
Alignment explanation
Indices: 106802189--106802268 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 22
106802179 AAATATTAAA
106802189 ACCCTAAACTCTAAACT-CAAG
1 ACCCTAAACTCTAAACTCCAAG
* * *
106802210 ACCCTATAC-CCAAAATCCAAG
1 ACCCTAAACTCTAAACTCCAAG
* *
106802231 ACCATAAACTCTTAAAC-CCAAT
1 ACCCTAAACTC-TAAACTCCAAG
*
106802253 ACCATAAA-TCCTAAAC
1 ACCCTAAACT-CTAAAC
106802269 CTAATATCCT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
20 5 0.11
21 25 0.53
22 14 0.30
23 3 0.06
ACGTcount: A:0.45, C:0.34, G:0.03, T:0.19
Consensus pattern (22 bp):
ACCCTAAACTCTAAACTCCAAG
Found at i:106802269 original size:21 final size:22
Alignment explanation
Indices: 106802226--106802274 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
106802216 TACCCAAAAT
* *
106802226 CCAAGACCATAAACTCTTAAAC
1 CCAATACCATAAACTCCTAAAC
106802248 CCAATACCATAAA-TCCTAAAC
1 CCAATACCATAAACTCCTAAAC
*
106802269 CTAATA
1 CCAATA
106802275 TCCTAATCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (22 bp):
CCAATACCATAAACTCCTAAAC
Found at i:106806255 original size:15 final size:15
Alignment explanation
Indices: 106806235--106806273 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
106806225 ACAAAACTTG
106806235 AAAAATAAT-TAACCT
1 AAAAATAATCTAA-CT
106806250 AAAAATAATCTAACT
1 AAAAATAATCTAACT
106806265 AGAAAATAA
1 A-AAAATAA
106806274 ACATTAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAAATAATCTAACT
Found at i:106809223 original size:13 final size:13
Alignment explanation
Indices: 106809205--106809229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106809195 GAGAATGAAA
106809205 ATCGACAACCAGC
1 ATCGACAACCAGC
106809218 ATCGACAACCAG
1 ATCGACAACCAG
106809230 TAGCAAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.36, G:0.16, T:0.08
Consensus pattern (13 bp):
ATCGACAACCAGC
Found at i:106810023 original size:2 final size:2
Alignment explanation
Indices: 106810018--106810043 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
106810008 GTGTGTGTGT
106810018 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
106810044 AGACCTTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:106818223 original size:20 final size:20
Alignment explanation
Indices: 106818191--106818228 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
106818181 ATTTTATTTA
*
106818191 AATTTTTTCTTTGTTGTTTG
1 AATTTTTTCTTTGGTGTTTG
106818211 AATTTCTTT-TTTGGTGTT
1 AATTT-TTTCTTTGGTGTT
106818229 AGATGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.68
Consensus pattern (20 bp):
AATTTTTTCTTTGGTGTTTG
Found at i:106833314 original size:32 final size:32
Alignment explanation
Indices: 106833273--106833333 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
106833263 CAAATTTAGC
106833273 TATACATTCAATTTCTAGGAAGAGAACTTGTA
1 TATACATTCAATTTCTAGGAAGAGAACTTGTA
106833305 TATACATTCAATTTCTAGGAAGAGAACTT
1 TATACATTCAATTTCTAGGAAGAGAACTT
106833334 TACTTGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (32 bp):
TATACATTCAATTTCTAGGAAGAGAACTTGTA
Found at i:106836850 original size:21 final size:22
Alignment explanation
Indices: 106836825--106836883 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
106836815 AGTTTTTGCC
*
106836825 TTTTGGGTCAATT-ACATCAAT
1 TTTTGAGTCAATTGACATCAAT
*
106836846 TTTTGAGTCAATTGATATCAAT
1 TTTTGAGTCAATTGACATCAAT
106836868 TTTTCGAGTCAATTGA
1 TTTT-GAGTCAATTGA
106836884 TTCAATCACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 12 0.35
22 11 0.32
23 11 0.32
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (22 bp):
TTTTGAGTCAATTGACATCAAT
Found at i:106836876 original size:23 final size:22
Alignment explanation
Indices: 106836825--106836889 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
106836815 AGTTTTTGCC
* *
106836825 TTTTGGGTCAATT-ACATCAAT
1 TTTTGAGTCAATTGATATCAAT
106836846 TTTTGAGTCAATTGATATCAAT
1 TTTTGAGTCAATTGATATCAAT
106836868 TTTTCGAGTCAATTGAT-TCAAT
1 TTTT-GAGTCAATTGATATCAAT
106836890 CACTTTTGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.30
22 16 0.40
23 12 0.30
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (22 bp):
TTTTGAGTCAATTGATATCAAT
Found at i:106842220 original size:20 final size:19
Alignment explanation
Indices: 106842177--106842223 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
106842167 CACTTTATTT
106842177 TATTT-TATTTAATAATAG
1 TATTTATATTTAATAATAG
106842195 TAATTTATATTTAATTAATTA-
1 T-ATTTATATTTAA-TAA-TAG
106842216 TATTTATA
1 TATTTATA
106842224 ACACTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.04
19 4 0.16
20 14 0.56
21 4 0.16
22 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTTATATTTAATAATAG
Found at i:106866642 original size:46 final size:46
Alignment explanation
Indices: 106866579--106866754 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
106866569 TATTTGGGCA
* *
106866579 TCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* * * * *
106866625 TTCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-T--G
*
106866670 CATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
*
106866718 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
106866755 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.55
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
Found at i:106866734 original size:93 final size:93
Alignment explanation
Indices: 106866575--106866746 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
106866565 GGAATATTTG
* * *
106866575 GGCATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
106866640 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* *
106866668 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGC-CTGAGCTCGTTGA
1 GGCATCCGAGCTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
*
106866732 GTTGAGTCCGAGTTC
65 GTTGAGTCCAAGTTC
106866747 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:106869629 original size:42 final size:46
Alignment explanation
Indices: 106869566--106869730 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 46
106869556 CTTCGTTTAC
** * *
106869566 TCGATGTCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCATATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
106869608 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCACATA
* * *
106869657 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCA-C
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC-AAT-ACATATCACATA
* * *
106869704 T-GATGCCATATCCCAGATATGGTCTTA
1 TCGATGTCATAGCCCAGCTATGGTCTTA
106869731 TACAGTAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 28 0.26
45 2 0.02
46 24 0.23
47 2 0.02
48 14 0.13
49 36 0.34
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (46 bp):
TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
Found at i:106869668 original size:49 final size:49
Alignment explanation
Indices: 106869607--106869796 Score: 185
Period size: 47 Copynumber: 4.0 Consensus size: 49
106869597 ATCTTCATAT
* *
106869607 ATCGATGTCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCACA
1 ATCGATGCCATAGCCCAGATATGGTCTTACACAGTAATCACATATCACA
* *
106869655 TATCGATGCCATAGCCCAGCTATGGTCTTACAC-G-AATCACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTACACAGTAATCACATATCACA
* * * * *
106869703 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTACACAGTAATCACATATCACA
* * * * * * *
106869749 ACCAATGCCATATCCCAGATATGGTCTTATACGGAAATCACTTATCAC
1 ATCGATGCCATAGCCCAGATATGGTCTTACACAGTAATCACATATCAC
106869797 TTGTAGCCGA
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
46 26 0.22
47 40 0.33
48 22 0.18
49 32 0.27
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (49 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACACAGTAATCACATATCACA
Found at i:106869834 original size:31 final size:31
Alignment explanation
Indices: 106869799--106870009 Score: 314
Period size: 31 Copynumber: 6.8 Consensus size: 31
106869789 CTTATCACTT
*
106869799 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
106869830 GTAGCCGGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
106869861 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
106869892 GTAGCAGAAGCTACCACTTTTCACTTATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
106869923 GCAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
106869954 GTAGCCGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
106869985 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
106870010 TGTCATTTGT
Statistics
Matches: 164, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 164 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:106870085 original size:50 final size:51
Alignment explanation
Indices: 106869985--106870113 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
106869975 CACTAATCAG
* * * *
106869985 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
*
106870036 GTAG-CGAAAGCTATTACTTATCACTT-TCACTTATCCTTGATCAGATAAGT
1 GTAGCCG-AAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
106870086 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
106870114 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
Found at i:106873450 original size:30 final size:30
Alignment explanation
Indices: 106873395--106873453 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
106873385 TTTTTTTAAA
*
106873395 AAAATATAAAAAATTCTAAAGATAATTTTT
1 AAAATATAAAAAATTCTAAAAATAATTTTT
106873425 AAAAT-TAAAAAATT-TAAAATAATAATTTT
1 AAAATATAAAAAATTCT-AAA-AATAATTTT
106873454 GGGGCCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 12 0.46
30 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (30 bp):
AAAATATAAAAAATTCTAAAAATAATTTTT
Found at i:106875539 original size:18 final size:18
Alignment explanation
Indices: 106875491--106875546 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
106875481 TTTAAAATTA
*
106875491 AAAAATATAAATATTATTTTT
1 AAAAATATAAA-A-T-TTATT
106875512 AAAAAT-TAAAATTTATT
1 AAAAATATAAAATTTATT
106875529 AAAAATATAAAATTTATT
1 AAAAATATAAAATTTATT
106875547 TTTTAATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
17 10 0.30
18 12 0.36
19 1 0.03
20 4 0.12
21 6 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAAATATAAAATTTATT
Found at i:106875765 original size:30 final size:28
Alignment explanation
Indices: 106875729--106875810 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 28
106875719 TTAATTAACT
106875729 TTTTTAAAAATTTAAAAATTATAAAAAAA
1 TTTTTAAAAATTTAAAAA-TATAAAAAAA
* *
106875758 CTTTTTAAAAAATTAAAAATATAAAAATA
1 -TTTTTAAAAATTTAAAAATATAAAAAAA
*
106875787 TTTTTAAAAATTTTAAAAAAATAA
1 TTTTTAAAAA-TTTAAAAATATAA
106875811 TTAAATGATG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
28 10 0.21
29 20 0.43
30 17 0.36
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTTTAAAAATTTAAAAATATAAAAAAA
Found at i:106887101 original size:23 final size:23
Alignment explanation
Indices: 106887075--106887118 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
106887065 TGTCGGCAGG
*
106887075 TTTTTTATTCCTTAAAATTTGCC
1 TTTTTTATTCCCTAAAATTTGCC
* *
106887098 TTTTTTTTTCCCTAGAATTTG
1 TTTTTTATTCCCTAAAATTTG
106887119 AGAAATGGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.16, G:0.07, T:0.59
Consensus pattern (23 bp):
TTTTTTATTCCCTAAAATTTGCC
Found at i:106888370 original size:16 final size:17
Alignment explanation
Indices: 106888346--106888378 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
106888336 AAAAGTGTAG
*
106888346 TTTACTAATATT-TTTT
1 TTTAATAATATTATTTT
106888362 TTTAATAATATTATTTT
1 TTTAATAATATTATTTT
106888379 ATGTTATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTAATAATATTATTTT
Found at i:106888672 original size:11 final size:11
Alignment explanation
Indices: 106888657--106888696 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
106888647 TTTTTCTCCC
106888657 TATTTTGCTAT
1 TATTTTGCTAT
* *
106888668 CATTTTACTAT
1 TATTTTGCTAT
*
106888679 TATATTGCTAT
1 TATTTTGCTAT
106888690 TATTTTG
1 TATTTTG
106888697 TTGTTATTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:106892980 original size:32 final size:30
Alignment explanation
Indices: 106892931--106893000 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 30
106892921 TAATTTACAA
**
106892931 ATAAAAATATAAAAATATAAATTGTATAAT
1 ATAAAAATATAAAAATATAAATAATATAAT
*
106892961 ATAAAAATATAACATAATATATATAATATAAT
1 ATAAAAATATAA-A-AATATAAATAATATAAT
106892993 ATATAAAA
1 ATA-AAAA
106893001 AAATATTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 12 0.35
31 1 0.03
32 17 0.50
33 4 0.12
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (30 bp):
ATAAAAATATAAAAATATAAATAATATAAT
Found at i:106892984 original size:22 final size:22
Alignment explanation
Indices: 106892929--106892995 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
106892919 CATAATTTAC
106892929 AAATAA-A-AATATAAAAATAT
1 AAATAATATAATATAAAAATAT
**
106892949 AAATTGTATAATATAAAAATAT
1 AAATAATATAATATAAAAATAT
106892971 AACATAATAT-ATATAATATAATAT
1 AA-ATAATATAATATAA-A-AATAT
106892995 A
1 A
106892996 TAAAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 4 0.11
21 1 0.03
22 21 0.55
23 6 0.16
24 6 0.16
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (22 bp):
AAATAATATAATATAAAAATAT
Found at i:106892989 original size:5 final size:5
Alignment explanation
Indices: 106892955--106892995 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
106892945 ATATAAATTG
*
106892955 TATAA TATAA -A-AA TATAA CATAA TAT-A TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
106892996 TAAAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
3 2 0.06
4 6 0.19
5 23 0.74
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
TATAA
Found at i:106896864 original size:5 final size:5
Alignment explanation
Indices: 106896854--106896878 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
106896844 TATAGAGGTG
106896854 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
106896879 TCTATATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:106897570 original size:3 final size:3
Alignment explanation
Indices: 106897562--106897872 Score: 134
Period size: 3 Copynumber: 106.3 Consensus size: 3
106897552 GCATTATTTC
* * *
106897562 TAT TAT TAT TAT TAC TAT TAT TA- TAC T-T TAT TAT TAT T-G TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
106897606 TAA TAT CA- TAT CTAT TAT TAT TCT TAT TA- TGT TAT TAG TAT TTT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
106897650 CTAT TAT TAT TGT TAT TAT TA- TAT TAT TTT TCT TA- TGT TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
106897694 TTT CTAT TTT TAT CAT CAT TAT TAA CA- TAT CAT TAT TAA TA- TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** * *
106897738 T-T T-T TCAA TAT TTT TAT TAT TAT CGT TAT T-T CAT TAT TAT ATCT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* *
106897782 TAC TAT TA- TATT TAT TAT TTT TAT T-T TAT T-T TAT T-T CTAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
106897825 TAT TAT TAT TAT TAT TAT TAT TAT GTCTT TAC TAT TAT AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -T-AT TAT TAT TAT TAT TAT TAT
106897872 T
1 T
106897873 TTCGCTACTA
Statistics
Matches: 225, Mismatches: 58, Indels: 50
0.68 0.17 0.15
Matches are distributed among these distances:
2 26 0.12
3 183 0.81
4 15 0.07
5 1 0.00
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:106897640 original size:17 final size:17
Alignment explanation
Indices: 106897620--106897850 Score: 80
Period size: 17 Copynumber: 14.1 Consensus size: 17
106897610 ATCATATCTA
*
106897620 TTATTATTCTTATTATG
1 TTATTATTATTATTATG
* * *
106897637 TTATTAGTATT-TTCTA
1 TTATTATTATTATTATG
*
106897653 TTATTATTGTTATTAT-
1 TTATTATTATTATTATG
* *
106897669 TATATTATTTTTCTTATG
1 T-TATTATTATTATTATG
*
106897687 TTATTATTTTCTATT-T-
1 TTATTATTAT-TATTATG
* * **
106897703 TTATCATCATTATTAAC
1 TTATTATTATTATTATG
* * * *
106897720 ATATCATTATTAATATA
1 TTATTATTATTATTATG
*
106897737 TT-TT-TTCAATATT-T-
1 TTATTATT-ATTATTATG
**
106897751 TTATTATTATCGTTAT-
1 TTATTATTATTATTATG
* *
106897767 TTCATTATTATATCTTACTA
1 TT-ATTATTAT-TATTA-TG
106897787 TTA-TATTTATTATT-T-
1 TTATTA-TTATTATTATG
*
106897802 TTATT-TTATT-TTATT
1 TTATTATTATTATTATG
106897817 TCTATTATTATTATTA--
1 T-TATTATTATTATTATG
106897833 TTATTATTATTATTATG
1 TTATTATTATTATTATG
106897850 T
1 T
106897851 CTTTACTATT
Statistics
Matches: 162, Mismatches: 29, Indels: 46
0.68 0.12 0.19
Matches are distributed among these distances:
13 2 0.01
14 8 0.05
15 30 0.19
16 37 0.23
17 62 0.38
18 15 0.09
19 6 0.04
20 2 0.01
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
TTATTATTATTATTATG
Found at i:106897688 original size:25 final size:25
Alignment explanation
Indices: 106897562--106897848 Score: 84
Period size: 25 Copynumber: 11.4 Consensus size: 25
106897552 GCATTATTTC
* *
106897562 TATTATTATTATTACTATTATTATACTT
1 TATTATTA-TATTATTATTATTAT--GT
* **
106897590 TATTATTAT-TGTATT-TTAATATCA
1 TATTATTATAT-TATTATTATTATGT
*
106897614 TATCTA-T-TATTATTCTTATTATGT
1 TAT-TATTATATTATTATTATTATGT
*
106897638 TATTAGTAT-TT-TCTATTATTATTGT
1 TATTATTATATTAT-TATTATTA-TGT
* *
106897663 TATTATTATATTATTTTTCTTATGT
1 TATTATTATATTATTATTATTATGT
* * *
106897688 TATTATT-T-TCTATTTTTATCATCAT
1 TATTATTATAT-TATTATTATTAT-GT
** * * *
106897713 TATTAACATATCATTATTAATATAT
1 TATTATTATATTATTATTATTATGT
*
106897738 T-TT-TTCAATATTTTTATTATTATCGT
1 TATTATT--ATATTATTATTATTAT-GT
* * *
106897764 TATT-TCATTATTATATCTTACTAT-T
1 TATTATTA-TATTAT-TATTATTATGT
*
106897789 ATATTTATTAT-TT-TTATT-TTATTT
1 -TA-TTATTATATTATTATTATTATGT
*
106897813 TATT-TCTATTATTATTATTATTATTAT
1 TATTAT-TA-TATTATTATTATTA-TGT
106897840 TATTATTAT
1 TATTATTAT
106897849 GTCTTTACTA
Statistics
Matches: 194, Mismatches: 34, Indels: 64
0.66 0.12 0.22
Matches are distributed among these distances:
21 1 0.01
22 4 0.02
23 15 0.08
24 43 0.22
25 54 0.28
26 39 0.20
27 27 0.14
28 11 0.06
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (25 bp):
TATTATTATATTATTATTATTATGT
Found at i:106897694 original size:20 final size:18
Alignment explanation
Indices: 106897562--106897848 Score: 70
Period size: 17 Copynumber: 16.3 Consensus size: 18
106897552 GCATTATTTC
* *
106897562 TATTATTATTATTACTAT
1 TATTATTATTGTTATTAT
*
106897580 TATTA-TACT-TTATTAT
1 TATTATTATTGTTATTAT
* *
106897596 TATT-GTATT-TTAATAT
1 TATTATTATTGTTATTAT
* *
106897612 CATATCTATTATTATTCTTAT
1 --TAT-TATTATTGTTATTAT
* *
106897633 TA-TGTTATTAG-TATTTT
1 TATTATTATT-GTTATTAT
106897650 CTATTATTATTGTTATTAT
1 -TATTATTATTGTTATTAT
* *
106897669 TA-TATTATTTTTCTTA-
1 TATTATTATTGTTATTAT
* * *
106897685 TGTTATTATTTTCTATTTT
1 TATTATTATTGT-TATTAT
* * * *
106897704 TATCATCATTATTAACATAT
1 TATTATTATTGTT-A-TTAT
* * *
106897724 CATTATTAAT-ATATT-T
1 TATTATTATTGTTATTAT
* *
106897740 T-TTCAATATTTTTATTAT
1 TATT-ATTATTGTTATTAT
** *
106897758 TATCGTTATT-TCATTAT
1 TATTATTATTGTTATTAT
* **
106897775 TA-TA-TCTTACTATTA-
1 TATTATTATTGTTATTAT
*
106897790 TATTTATTATTTTTATT-T
1 TA-TTATTATTGTTATTAT
106897808 TATT-TTATT-TCTATTAT
1 TATTATTATTGT-TATTAT
*
106897825 TATTATTATTATTATTAT
1 TATTATTATTGTTATTAT
106897843 TATTAT
1 TATTAT
106897849 GTCTTTACTA
Statistics
Matches: 195, Mismatches: 46, Indels: 56
0.66 0.15 0.19
Matches are distributed among these distances:
15 8 0.04
16 38 0.19
17 56 0.29
18 50 0.26
19 26 0.13
20 12 0.06
21 5 0.03
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTATTATTGTTATTAT
Found at i:106897727 original size:14 final size:14
Alignment explanation
Indices: 106897708--106897737 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
106897698 TATTTTTATC
106897708 ATCATTATTAACAT
1 ATCATTATTAACAT
*
106897722 ATCATTATTAATAT
1 ATCATTATTAACAT
106897736 AT
1 AT
106897738 TTTTTCAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (14 bp):
ATCATTATTAACAT
Found at i:106897947 original size:13 final size:13
Alignment explanation
Indices: 106897929--106897954 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106897919 TAGTTACTAT
106897929 TATTATATACATA
1 TATTATATACATA
106897942 TATTATATACATA
1 TATTATATACATA
106897955 CTTTTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TATTATATACATA
Found at i:106898074 original size:11 final size:11
Alignment explanation
Indices: 106898060--106898142 Score: 61
Period size: 11 Copynumber: 8.0 Consensus size: 11
106898050 ATATATATCA
106898060 TATATATTTTT
1 TATATATTTTT
106898071 TATATA-TTTT
1 TATATATTTTT
* *
106898081 TATATATTATG
1 TATATATTTTT
*
106898092 TATATATCTTTG
1 TATATAT-TTTT
106898104 TA-ATA----T
1 TATATATTTTT
*
106898110 TATATCTTTTT
1 TATATATTTTT
* *
106898121 TATATATTATG
1 TATATATTTTT
106898132 TATATATTTTT
1 TATATATTTTT
106898143 AATACTAGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
6 2 0.04
7 2 0.04
10 10 0.18
11 36 0.65
12 5 0.09
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (11 bp):
TATATATTTTT
Found at i:106898157 original size:22 final size:21
Alignment explanation
Indices: 106898070--106898158 Score: 69
Period size: 22 Copynumber: 4.3 Consensus size: 21
106898060 TATATATTTT
*
106898070 TTATATATTTTT-ATATATTA
1 TTATATATTTTTAATATAGTA
* *
106898090 TGTATATATCTTT-GTA-A-TA
1 T-TATATATTTTTAATATAGTA
* * *
106898109 TTATATCTTTTTTATATATTA
1 TTATATATTTTTAATATAGTA
106898130 TGTATATATTTTTAATACTAGTA
1 T-TATATATTTTTAATA-TAGTA
106898153 TTATAT
1 TTATAT
106898159 GTTGTATATA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
18 9 0.16
19 5 0.09
20 3 0.05
21 15 0.27
22 18 0.33
23 5 0.09
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATATATTTTTAATATAGTA
Found at i:106898167 original size:40 final size:40
Alignment explanation
Indices: 106898071--106898149 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
106898061 ATATATTTTT
* *
106898071 TATATATTT-TTATATATTATGTATATATCTTTGTAATAT
1 TATATCTTTGTTATATATTATGTATATATCTTTGTAATAC
*
106898110 TATATCTTTTTTATATATTATGTATATAT-TTT-TAATAC
1 TATATCTTTGTTATATATTATGTATATATCTTTGTAATAC
106898148 TA
1 TA
106898150 GTATTATATG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 7 0.19
39 11 0.30
40 19 0.51
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (40 bp):
TATATCTTTGTTATATATTATGTATATATCTTTGTAATAC
Found at i:106900354 original size:40 final size:40
Alignment explanation
Indices: 106900309--106900405 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
106900299 GAAAAAATCG
* * * *
106900309 AATAGATGGAGTTTTAGCGTCGTTTTTAAAAAAACGCCAC
1 AATAGATCGAGCTTTAGAGGCGTTTTTAAAAAAACGCCAC
* * *
106900349 AATAGATCGAGCTTTAGAGGCGTTTTTGAAAAAGCGCCGC
1 AATAGATCGAGCTTTAGAGGCGTTTTTAAAAAAACGCCAC
* * *
106900389 TATAGGTCGACCTTTAG
1 AATAGATCGAGCTTTAG
106900406 CGATGTTTTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (40 bp):
AATAGATCGAGCTTTAGAGGCGTTTTTAAAAAAACGCCAC
Found at i:106900414 original size:40 final size:39
Alignment explanation
Indices: 106900321--106900415 Score: 91
Period size: 40 Copynumber: 2.4 Consensus size: 39
106900311 TAGATGGAGT
*
106900321 TTTAGCGTCGTTTTTAAAAAAACGCCACAATAGATCGAGC
1 TTTAGCGT-GTTTTTAAAAAAACGCCACAATAGATCGACC
* * * * * * *
106900361 TTTAGAGGCGTTTTTGAAAAAGCGCCGCTATAGGTCGACC
1 TTTAG-CGTGTTTTTAAAAAAACGCCACAATAGATCGACC
106900401 TTTAGCGATGTTTTT
1 TTTAGCG-TGTTTTT
106900416 CCCAAAACGC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
39 1 0.02
40 41 0.95
41 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (39 bp):
TTTAGCGTGTTTTTAAAAAAACGCCACAATAGATCGACC
Found at i:106904473 original size:6 final size:6
Alignment explanation
Indices: 106904462--106904509 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
106904452 TATACAGTCA
* * * * *
106904462 TCAAAT TCAAAT TCGAAT TCAGAT CCAAAT CCAAAT TCAAAT CCAAAT
1 TCAAAT TCAAAT TCAAAT TCAAAT TCAAAT TCAAAT TCAAAT TCAAAT
106904510 CCAGATCCAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.46, C:0.23, G:0.04, T:0.27
Consensus pattern (6 bp):
TCAAAT
Found at i:106904498 original size:18 final size:18
Alignment explanation
Indices: 106904477--106904537 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
106904467 TTCAAATTCG
106904477 AATTCAGATCCAAATCCA
1 AATTCAGATCCAAATCCA
*
106904495 AATTCAAATCCAAATCCA
1 AATTCAGATCCAAATCCA
* * *
106904513 GATCCAGATCCACATCCAA
1 AATTCAGATCCAAATCC-A
106904532 AATTCA
1 AATTCA
106904538 AAAGTCATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
18 30 0.86
19 5 0.14
ACGTcount: A:0.44, C:0.30, G:0.05, T:0.21
Consensus pattern (18 bp):
AATTCAGATCCAAATCCA
Found at i:106904504 original size:12 final size:12
Alignment explanation
Indices: 106904462--106904539 Score: 57
Period size: 12 Copynumber: 6.4 Consensus size: 12
106904452 TATACAGTCA
*
106904462 TCAAATTCAAAT
1 TCAAATCCAAAT
* * *
106904474 TCGAATTCAGAT
1 TCAAATCCAAAT
*
106904486 CCAAATCCAAAT
1 TCAAATCCAAAT
106904498 TCAAATCCAAAT
1 TCAAATCCAAAT
* * *
106904510 CCAGATCCAGAT
1 TCAAATCCAAAT
* *
106904522 CCACATCCAAAAT
1 TCAAATCC-AAAT
106904535 TCAAA
1 TCAAA
106904540 AGTCATATCC
Statistics
Matches: 51, Mismatches: 14, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
12 45 0.88
13 6 0.12
ACGTcount: A:0.45, C:0.27, G:0.05, T:0.23
Consensus pattern (12 bp):
TCAAATCCAAAT
Found at i:106904510 original size:6 final size:6
Alignment explanation
Indices: 106904484--106904532 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
106904474 TCGAATTCAG
* * * *
106904484 ATCCAA ATCCAA ATTCAA ATCCAA ATCCAG ATCCAG ATCCAC ATCCAA
1 ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA
106904532 A
1 A
106904533 ATTCAAAAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.45, C:0.33, G:0.04, T:0.18
Consensus pattern (6 bp):
ATCCAA
Found at i:106904712 original size:43 final size:42
Alignment explanation
Indices: 106904665--106904747 Score: 148
Period size: 43 Copynumber: 2.0 Consensus size: 42
106904655 ATATTTTTAT
106904665 TTATGTTTTAGTAGTTTATTAAAATAAGGGAAACTATTTTCCC
1 TTATGTTTTAGTAGTTTATTAAAATAAGGG-AACTATTTTCCC
*
106904708 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTC
1 TTATGTTTTAGTAGTTTATTAAAATAAGGGAACTATTTTC
106904748 TGAATTAGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 10 0.26
43 29 0.74
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (42 bp):
TTATGTTTTAGTAGTTTATTAAAATAAGGGAACTATTTTCCC
Found at i:106906815 original size:84 final size:83
Alignment explanation
Indices: 106906701--106907089 Score: 403
Period size: 84 Copynumber: 4.6 Consensus size: 83
106906691 TGGAGTAGGC
*
106906701 TAAAAAGTTCAAATTCTGTTTCCTCGAGATGGTAGTGGAGCAGACTGAAGATTGAAGTCTTCCTG
1 TAAAAAGTTCAGATTCTG-TTCCTCGAGATGGTAGTGGAGCAGACTGAAGATTGAAGTCTTCCTG
*
106906766 ATATGACAGGGAAGCAAAT
65 AAATGACAGGGAAGCAAAT
** * * * *
106906785 TGGAAAGTTTAGATTCTATCTCCTCGAGATGGTAGT-GAGGTAGACTGAAGATTGAGGTCTTCCT
1 TAAAAAGTTCAGATTCTGT-TCCTCGAGATGGTAGTGGA-GCAGACTGAAGATTGAAGTCTTCCT
* * *
106906849 GAAATAGTA-A-TGAAGTAGAT
64 GAAAT-G-ACAGGGAAGCAAAT
* * *
106906869 TAAAAAGTTCAGATTATGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGGTTAAAGTCTTCCTG
1 TAAAAAGTTCAGATTCTGTT-CCTCGAGATGGTAGTGGAGCAGACTGAAGATTGAAGTCTTCCTG
* *
106906934 ATATGACAGAGAAGCAAAT
65 AAATGACAGGGAAGCAAAT
* *
106906953 TAGAAAGTTCAGATTCTGTCTCCTCGAGAT-GTAGT-GAGGCAGATTGAAGATTGAAGTCTTCCT
1 TAAAAAGTTCAGATTCTGT-TCCTCGAGATGGTAGTGGA-GCAGACTGAAGATTGAAGTCTTCCT
* * *
106907016 GAAAT-AGCAAGGAAGCAGAC
64 GAAATGA-CAGGGAAGCAAAT
* * * * * *
106907036 TGAAAATTTTAGATCCTGTTCCCTCGATATGGTAGTGGAGCACACTGAAGATTG
1 TAAAAAGTTCAGATTCTGTT-CCTCGAGATGGTAGTGGAGCAGACTGAAGATTG
106907090 CAGAATAAAA
Statistics
Matches: 249, Mismatches: 42, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
82 5 0.02
83 68 0.27
84 168 0.67
85 7 0.03
86 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (83 bp):
TAAAAAGTTCAGATTCTGTTCCTCGAGATGGTAGTGGAGCAGACTGAAGATTGAAGTCTTCCTGA
AATGACAGGGAAGCAAAT
Found at i:106906979 original size:168 final size:167
Alignment explanation
Indices: 106906700--106907088 Score: 571
Period size: 168 Copynumber: 2.3 Consensus size: 167
106906690 GTGGAGTAGG
* * *
106906700 CTAAAAAGTTCAAATTCTGTTTCCTCGAGATGGTAGTGGAGCAGACTGAAGATTGAAGTCTTCCT
1 CTAAAAAGTTCAGATTCTGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGATTAAAGTCTTCCT
* * * *
106906765 GATATGACAGGGAAGCAAATTGGAAAGTTTAGATTCTATCTCCTCGAGATGGTAGTGAGGTAGAC
66 GATATGACAGAGAAGCAAATTAGAAAGTTCAGATTCTATCTCCTCGAGAT-GTAGTGAGGCAGAC
* * * *
106906830 TGAAGATTGAGGTCTTCCTGAAATAGTAATGAAGTAGA
130 TGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGA
* * *
106906868 TTAAAAAGTTCAGATTATGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGGTTAAAGTCTTCCT
1 CTAAAAAGTTCAGATTCTGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGATTAAAGTCTTCCT
* *
106906933 GATATGACAGAGAAGCAAATTAGAAAGTTCAGATTCTGTCTCCTCGAGATGTAGTGAGGCAGATT
66 GATATGACAGAGAAGCAAATTAGAAAGTTCAGATTCTATCTCCTCGAGATGTAGTGAGGCAGACT
106906998 GAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGA
131 GAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGA
* * * * * *
106907035 CTGAAAATTTTAGATCCTGTTCCCTCGATATGGTAGTGGAGCACACTGAAGATT
1 CTAAAAAGTTCAGATTCTGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGATT
106907089 GCAGAATAAA
Statistics
Matches: 196, Mismatches: 25, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
167 91 0.46
168 105 0.54
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (167 bp):
CTAAAAAGTTCAGATTCTGTTCCCTCGAGATGGTAGTGGAGCAGACTGAAGATTAAAGTCTTCCT
GATATGACAGAGAAGCAAATTAGAAAGTTCAGATTCTATCTCCTCGAGATGTAGTGAGGCAGACT
GAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGA
Found at i:106907213 original size:143 final size:142
Alignment explanation
Indices: 106906956--106907232 Score: 362
Period size: 143 Copynumber: 1.9 Consensus size: 142
106906946 AGCAAATTAG
* *
106906956 AAAGTTCAGATTCTGTCTCCTCGAGATGTAGTGAGGCAGATTGAAGATTGAAGTCTTCCTGAAAT
1 AAAGTTCAGATTCTGTCTCCTCGAGATGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAAAT
* * * * * *
106907021 AGCAAGGAAGCAGACTGAAAATTTTAGATCCTGTTCCCTCGATATGGTAGT-GGAGCACACTGAA
66 AGCAAGGAAGCAAACTGAAAAGTTCAGATCCTATTCCCTCGAGATGGTAGTAAG-GCACACTGAA
106907085 GATTGCAGAATAA
130 GATTGCAGAATAA
* *
106907098 AAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGATA
1 AAAGTTCAGATTCTGTCTCCTCGAGAT-GTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAAA
* * * * *
106907163 T-GACAGGGAAGTAAATTGAAAAGTTCAGATTCTA-TCTCCTCGAGATGGTAGTAAGGCAGACTG
65 TAG-CAAGGAAGCAAACTGAAAAGTTCAGATCCTATTC-CCTCGAGATGGTAGTAAGGCACACTG
106907226 AAGATTG
128 AAGATTG
106907233 AAGTCTTCCT
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
142 29 0.25
143 86 0.74
144 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (142 bp):
AAAGTTCAGATTCTGTCTCCTCGAGATGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAAAT
AGCAAGGAAGCAAACTGAAAAGTTCAGATCCTATTCCCTCGAGATGGTAGTAAGGCACACTGAAG
ATTGCAGAATAA
Found at i:106907257 original size:84 final size:83
Alignment explanation
Indices: 106907095--106907316 Score: 270
Period size: 84 Copynumber: 2.6 Consensus size: 83
106907085 GATTGCAGAA
*
106907095 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
1 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGT-AGGCAGACTGAAGATTGAAGTCTTCCTG
* *
106907160 ATATGACAGGGAAGTAAAT
65 AAATGACAGGGAAGCAAAT
* * *
106907179 TGAAAAGTTCAGATTCTATCTCCTCGAGATGGTAGTAAGGCAGACTGAAGATTGAAGTCTTCCTG
1 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGT-AGGCAGACTGAAGATTGAAGTCTTCCTG
*
106907244 AAATAGTA-A-GGAAGCAGAT
65 AAAT-G-ACAGGGAAGCAAAT
* * * *
106907263 TAAAAATTTTAGATTTTGT-TCTCTCGAGATGGTAGTGGAGCAGTCTGAAGATTG
1 TAAAAAGTTCAGATTTTGTCTC-CTCGAGATGGTAGTAG-GCAGACTGAAGATTG
106907317 CAGGGTGAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
83 3 0.03
84 113 0.95
85 2 0.02
86 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (83 bp):
TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTAGGCAGACTGAAGATTGAAGTCTTCCTGA
AATGACAGGGAAGCAAAT
Found at i:106907330 original size:227 final size:224
Alignment explanation
Indices: 106906869--106907471 Score: 786
Period size: 227 Copynumber: 2.7 Consensus size: 224
106906859 TGAAGTAGAT
* *
106906869 TAAAAAGTTCAGATTATGT-TCCCTCGAGATGGTAGTG-GAGCAGACTGAAGGTTAAAGTCTTCC
1 TAAAAAGTTCAGATTTTGTCT-CCTCGAGATGGTAGTGAG-GCAGACTGAAGATT-AAGTCTTCC
*
106906932 TGATATGACAGAGAAGCAAATTAGAAAGTTCAGATTCTGTCTCCTCGAGAT-GTAGTGAGGCAGA
63 TGATATGACAGGGAAGCAAATTA-AAAGTTCAGATTCTGTCTCCTCGAGATGGTAGT-AGGCAGA
* *
106906996 TTGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGACTGAAAATTTTAGATCCTGTTCCCTC
126 CTGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGACTAAAAATTTTAGATCCTGTTCCCTC
*
106907061 GATATGGTAGTGGAGCACACTGAAGATTGCAGAA
191 GAGATGGTAGTGGAGCACACTGAAGATTGCAGAA
*
106907095 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
1 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATT-AAGTCTTCCTG
* *
106907160 ATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCCTCGAGATGGTAGTAAGGCAGACT
65 ATATGACAGGGAAGCAAATT-AAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGT-AGGCAGACT
* * ** *
106907225 GAAGATTGAAGTCTTCCTGAAATAGTAAGGAAGCAGATTAAAAATTTTAGATTTTGTTCTCTCGA
128 GAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGACTAAAAATTTTAGATCCTGTTCCCTCGA
** **
106907290 GATGGTAGTGGAGCAGTCTGAAGATTGCAGGG
193 GATGGTAGTGGAGCACACTGAAGATTGCAGAA
* * * *
106907322 TGAAAAGTTTAGATTCTT-TCTCCTCAAGATGGTAGTGAGGCAGACTGAAGATTAAGGTATTCCT
1 TAAAAAGTTCAGATT-TTGTCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATTAA-GTCTTCCT
* * * * * *
106907386 GAAAT-AGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGT-TCTCTCGATATGGTAGTGGAGCGG
64 GATATGA-CAGGGAAGCAAATT-AAAAGTTCAGATTCTGTCTC-CTCGAGATGGTAGTAG-GCAG
106907449 ACTGAAGATTGAAGTCTTCCTGA
125 ACTGAAGATTGAAGTCTTCCTGA
106907472 TATGATAGGG
Statistics
Matches: 334, Mismatches: 34, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
226 107 0.32
227 225 0.67
228 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (224 bp):
TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATTAAGTCTTCCTGA
TATGACAGGGAAGCAAATTAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTAGGCAGACTGAA
GATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGACTAAAAATTTTAGATCCTGTTCCCTCGAGAT
GGTAGTGGAGCACACTGAAGATTGCAGAA
Found at i:106907355 original size:143 final size:143
Alignment explanation
Indices: 106907179--106907459 Score: 438
Period size: 143 Copynumber: 2.0 Consensus size: 143
106907169 GGAAGTAAAT
* *
106907179 TGAAAAGTTCAGATTCTATCTCCTCGAGATGGTAGTAAGGCAGACTGAAGATTGAA-GTCTTCCT
1 TGAAAAGTTCAGATTCTATCTCCTCAAGATGGTAGTAAGGCAGACTGAAGATT-AAGGTATTCCT
* * * * *
106907243 GAAATAGTAAGGAAGCAGATTAAAAATTTTAGATTTTGTTCTCTCGAGATGGTAGTGGAGCAGTC
65 GAAATAGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGTTCTCTCGAGATGGTAGTGGAGCAGAC
106907308 TGAAGATTGCAGGG
130 TGAAGATTGCAGGG
* * *
106907322 TGAAAAGTTTAGATTCTTTCTCCTCAAGATGGTAGTGAGGCAGACTGAAGATTAAGGTATTCCTG
1 TGAAAAGTTCAGATTCTATCTCCTCAAGATGGTAGTAAGGCAGACTGAAGATTAAGGTATTCCTG
* *
106907387 AAATAGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGTTCTCTCGATATGGTAGTGGAGCGGACT
66 AAATAGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGTTCTCTCGAGATGGTAGTGGAGCAGACT
106907452 GAAGATTG
131 GAAGATTG
106907460 AAGTCTTCCT
Statistics
Matches: 125, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
142 2 0.02
143 123 0.98
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (143 bp):
TGAAAAGTTCAGATTCTATCTCCTCAAGATGGTAGTAAGGCAGACTGAAGATTAAGGTATTCCTG
AAATAGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGTTCTCTCGAGATGGTAGTGGAGCAGACT
GAAGATTGCAGGG
Found at i:106907469 original size:84 final size:84
Alignment explanation
Indices: 106907322--106907627 Score: 304
Period size: 84 Copynumber: 3.6 Consensus size: 84
106907312 GATTGCAGGG
* * * *
106907322 TGAAAAGTTTAGATTCT-TTCTCCTCAAGATGGTAGTGAGGCAGACTGAAGATT-AAGGTATTCC
1 TGAAAAGTTCAGATTCTGTTCT-CTCGATATGGTAGTGAGGCAGACTGAAGATTGAA-GTCTTCC
106907385 TGAAATAGCAAGGAAGCAGAT
64 TGAAATAGCAAGGAAGCAGAT
* *
106907406 TAAAAAGTTCAGATTCTGTTCTCTCGATATGGTAGTG-GAGCGGACTGAAGATTGAAGTCTTCCT
1 TGAAAAGTTCAGATTCTGTTCTCTCGATATGGTAGTGAG-GCAGACTGAAGATTGAAGTCTTCCT
* * *
106907470 GATAT-G-ATAGGGAAGTAAAT
65 GAAATAGCA-A-GGAAGCAGAT
* * * *
106907490 TGGAAAGTTCAGATTCTG-TCTTATTGATATGGTAGTGAGGCAGACAGAAGATTGAAGTCTTCCT
1 TGAAAAGTTCAGATTCTGTTC-TCTCGATATGGTAGTGAGGCAGACTGAAGATTGAAGTCTTCCT
106907554 GAAATAGCAAGGAAGCAGAT
65 GAAATAGCAAGGAAGCAGAT
* * * * * * *
106907574 TGAAAATTTTAGATTTTTTTCCCTTGAAATGGTAGTG-GAGCA-ATCTGAAGATTG
1 TGAAAAGTTCAGATTCTGTTCTCTCGATATGGTAGTGAG-GCAGA-CTGAAGATTG
106907628 CAGAGTGAAA
Statistics
Matches: 183, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
82 1 0.01
83 7 0.04
84 163 0.89
85 11 0.06
86 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (84 bp):
TGAAAAGTTCAGATTCTGTTCTCTCGATATGGTAGTGAGGCAGACTGAAGATTGAAGTCTTCCTG
AAATAGCAAGGAAGCAGAT
Found at i:106907475 original size:311 final size:311
Alignment explanation
Indices: 106907089--106907782 Score: 1009
Period size: 311 Copynumber: 2.2 Consensus size: 311
106907079 ACTGAAGATT
* *
106907089 GCAGAATAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTC
1 GCAGATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTC
*
106907154 TTCCTGATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCCTCGAGATGGTAGTAAGG
66 TTCCTGATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCATCGAGATGGTAGTAAGG
* *
106907219 CAGACTGAAGATTGAAGTCTTCCTGAAATAGTAAGGAAGCAGATTAAAAATTTTAGATTTTGTTC
131 CAGACAGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGATTAAAAATTTTAGATTTTGTTC
* * * * * * *
106907284 TCTCGAGATGGTAGTGGAGCAGTCTGAAGATTGCAGGGTGAAAAGTTTAGATTCTTTCTCCTCAA
196 CCTCGAAATGGTAGTGGAGCAATCTGAAGATTGCAGAGTGAAAAGTTCAGATTCTGTCTCCCCAA
*
106907349 GATGGTAGTGAGGCAGACTGAAGATT-AAGGTATTCCTGAAAT-AGCAAGGAA
261 GATGGTAGTGAGGCAAACTGAAGATTGAA-GTATTCCTGAAATGA-CAAGGAA
* **
106907400 GCAGATTAAAAAGTTCAGATTCTGT-TCTCTCGATATGGTAGTG-GAGCGGACTGAAGATTGAAG
1 GCAGATTAAAAAGTTCAGATTCTGTCTC-CTCGAGATGGTAGTGAG-GCAAACTGAAGATTGAAG
* * * * * * *
106907463 TCTTCCTGATATGATAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTTATTGATATGGTAGTGA
64 TCTTCCTGATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCATCGAGATGGTAGTAA
* *
106907528 GGCAGACAGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGATTGAAAATTTTAGATTTTTT
129 GGCAGACAGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGATTAAAAATTTTAGATTTTGT
*
106907593 TCCCTTGAAATGGTAGTGGAGCAATCTGAAGATTGCAGAGTGAAAAGTTCAGATTCTGTCTCCCC
194 TCCCTCGAAATGGTAGTGGAGCAATCTGAAGATTGCAGAGTGAAAAGTTCAGATTCTGTCTCCCC
* * * *
106907658 GAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGATATGACAGGGAA
259 AAGATGGTAGTGAGGCAAACTGAAGATTGAAGTATTCCTGAAATGACAAGGAA
* * ** *
106907711 GTAAATTGGAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGCAGATTGAAGTC
1 GCAGATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTC
106907776 TTCCTGA
66 TTCCTGA
106907783 AATAGAAAAG
Statistics
Matches: 339, Mismatches: 38, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
310 3 0.01
311 330 0.97
312 6 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (311 bp):
GCAGATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTC
TTCCTGATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCATCGAGATGGTAGTAAGG
CAGACAGAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGATTAAAAATTTTAGATTTTGTTC
CCTCGAAATGGTAGTGGAGCAATCTGAAGATTGCAGAGTGAAAAGTTCAGATTCTGTCTCCCCAA
GATGGTAGTGAGGCAAACTGAAGATTGAAGTATTCCTGAAATGACAAGGAA
Found at i:106907524 original size:227 final size:223
Alignment explanation
Indices: 106906869--106907543 Score: 767
Period size: 227 Copynumber: 3.0 Consensus size: 223
106906859 TGAAGTAGAT
*
106906869 TAAAAAGTTCAGATTATGTTC-CCTCGAGATGGTAGTG-GAGCAGACTGAAGGTTAAAGTCTTCC
1 TAAAAAGTTCAGATT-T-TTCTCCTCGAGATGGTAGTGAG-GCAGACTGAAGATT-AAGTCTTCC
*
106906932 TGATATG-ACAGAGAAGCAAATTAGAAAGTTCAGATTCTGTCTCCTCGAGAT-GTAGTGAGGCAG
62 TGATATGCA-AG-GAAGCAAATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAG
* * * *
106906995 ATTGAAGATTGAAGTCTTCCTGAAATAGCA-AGGAAGCAGACTGAAAATTTTAGATCCTGTTCCC
125 ACTGAAGATTGAAGTCTTCCTGAAAT-G-ATAGGAAGCAGATTGAAAATTTTAGATTCTGTTCTC
*
106907059 TCGATATGGTAGTGGAGCACACTGAAGATTGCAGAA
188 TCGATATGGTAGTGGAGCAGACTGAAGATTGCAGAA
*
106907095 TAAAAAGTTCAGATTTTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
1 TAAAAAGTTCAGATTTT-TCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATT-AAGTCTTCCTG
* * * * *
106907160 ATATGACAGGGAAGTAAATTGAAAAGTTCAGATTCTATCTCCTCGAGATGGTAGTAAGGCAGACT
64 ATATG-CAAGGAAGCAAATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAGACT
* *
106907225 GAAGATTGAAGTCTTCCTGAAAT-AGTAAGGAAGCAGATTAAAAATTTTAGATTTTGTTCTCTCG
128 GAAGATTGAAGTCTTCCTGAAATGA-T-AGGAAGCAGATTGAAAATTTTAGATTCTGTTCTCTCG
* * **
106907289 AGATGGTAGTGGAGCAGTCTGAAGATTGCAGGG
191 ATATGGTAGTGGAGCAGACTGAAGATTGCAGAA
* * * *
106907322 TGAAAAGTTTAGATTCTTTCTCCTCAAGATGGTAGTGAGGCAGACTGAAGATTAAGGTATTCCTG
1 TAAAAAGTTCAGATT-TTTCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATTAA-GTCTTCCTG
* * * *
106907387 AAATAGCAAGGAAGCAGATTAAAAAGTTCAGATTCTGT-TCTCTCGATATGGTAGTG-GAGCGGA
64 ATAT-GCAAGGAAGCAAATTAAAAAGTTCAGATTCTGTCTC-CTCGAGATGGTAGTGAG-GCAGA
* * * * * * *
106907450 CTGAAGATTGAAGTCTTCCTGATATGATAGGGAAGTAAATTGGAAAGTTCAGATTCTG-TCTTAT
126 CTGAAGATTGAAGTCTTCCTGAAATGATA-GGAAGCAGATTGAAAATTTTAGATTCTGTTC-TCT
* *
106907514 TGATATGGTAGT-GAGGCAGACAGAAGATTG
189 CGATATGGTAGTGGA-GCAGACTGAAGATTG
106907544 AAGTCTTCCT
Statistics
Matches: 384, Mismatches: 47, Indels: 35
0.82 0.10 0.08
Matches are distributed among these distances:
224 2 0.01
225 3 0.01
226 104 0.27
227 270 0.70
228 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (223 bp):
TAAAAAGTTCAGATTTTTCTCCTCGAGATGGTAGTGAGGCAGACTGAAGATTAAGTCTTCCTGAT
ATGCAAGGAAGCAAATTAAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAGACTGAA
GATTGAAGTCTTCCTGAAATGATAGGAAGCAGATTGAAAATTTTAGATTCTGTTCTCTCGATATG
GTAGTGGAGCAGACTGAAGATTGCAGAA
Found at i:106907641 original size:227 final size:227
Alignment explanation
Indices: 106907408--106907843 Score: 644
Period size: 227 Copynumber: 1.9 Consensus size: 227
106907398 AAGCAGATTA
* * **
106907408 AAAAGTTCAGATTCTGT-TCTCTCGATATGGTAGTG-GAGCGGACTGAAGATTGAAGTCTTCCTG
1 AAAAGTTCAGATTCTGTCTC-CCCGAGATGGTAGTGAG-GCAAACTGAAGATTGAAGTCTTCCTG
* * * * *
106907471 ATATGATAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTTATTGATATGGTAGTGAGGCAGACA
64 ATATGACAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTCATCGAGATGGTAGTGAGGCAAACA
* * * * *
106907536 GAAGATTGAAGTCTTCCTGAAATAGCAAGGAAGCAGATTGAAAATTTTAGATTTTTTTCCCTTGA
129 GAAGATTGAAGTCTTCCTGAAATAGAAAAGAAGCAGATTGAAAATTTCAGATTTTGTTCCCTCGA
106907601 AATGGT-AGTGGAGCAATCTGAAGATTGCAGAGTG
194 AATGGTAAG-GGAGCAATCTGAAGATTGCAGAGTG
106907635 AAAAGTTCAGATTCTGTCTCCCCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAT
1 AAAAGTTCAGATTCTGTCTCCCCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAT
* * *
106907700 ATGACAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGC
66 ATGACAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTCATCGAGATGGTAGTGAGGCAAACAGA
* * *
106907765 AGATTGAAGTCTTCCTGAAATAGAAAAGAAGCAGTTTGAAAATTTCAGCTTTTGTTCCCTCGAGA
131 AGATTGAAGTCTTCCTGAAATAGAAAAGAAGCAGATTGAAAATTTCAGATTTTGTTCCCTCGAAA
106907830 TGGTAAGGGAGCAA
196 TGGTAAGGGAGCAA
106907844 ATCGTAGAAA
Statistics
Matches: 186, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
227 181 0.97
228 5 0.03
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (227 bp):
AAAAGTTCAGATTCTGTCTCCCCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGAT
ATGACAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCTCATCGAGATGGTAGTGAGGCAAACAGA
AGATTGAAGTCTTCCTGAAATAGAAAAGAAGCAGATTGAAAATTTCAGATTTTGTTCCCTCGAAA
TGGTAAGGGAGCAATCTGAAGATTGCAGAGTG
Found at i:106907751 original size:143 final size:143
Alignment explanation
Indices: 106907493--106907770 Score: 328
Period size: 143 Copynumber: 1.9 Consensus size: 143
106907483 AGTAAATTGG
* ** * *
106907493 AAAGTTCAGATTCTGTCTTATTGATATGGTAGTGAGGCAGACAGAAGATTGAAGTCTTCCTGAAA
1 AAAGTTCAGATTCTGTCTCACCGAGATGGTAGTGAGGCAAACAGAAGATTGAAGTCTTCCTGAAA
* * * * * * *
106907558 TAGCAAGGAAGCAGATTGAAAATTTTAGATTTTTTTCCCTTGAAATGGTAGTG-GAGCAATCTGA
66 TAGCAAGGAAGCAAATTGAAAAGTTCAGATTTGTCTCCCTCGAAATGGTAGTGAG-GCAAACTGA
106907622 AGATTGCAGAGTGA
130 AGATTGCAGAGTGA
* * *
106907636 AAAGTTCAGATTCTGTCTCCCCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTGATA
1 AAAGTTCAGATTCTGTCTCACCGAGATGGTAGTGAGGCAAACAGAAGATTGAAGTCTTCCTGAAA
* * * *
106907701 T-GACAGGGAAGTAAATTGGAAAGTTCAGATTCTGTCT-CCTCGAGATGGTAGTGAGGCAAACTG
66 TAG-CAAGGAAGCAAATTGAAAAGTTCAGATT-TGTCTCCCTCGAAATGGTAGTGAGGCAAACTG
*
106907764 CAGATTG
129 AAGATTG
106907771 AAGTCTTCCT
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
142 1 0.01
143 107 0.96
144 4 0.04
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (143 bp):
AAAGTTCAGATTCTGTCTCACCGAGATGGTAGTGAGGCAAACAGAAGATTGAAGTCTTCCTGAAA
TAGCAAGGAAGCAAATTGAAAAGTTCAGATTTGTCTCCCTCGAAATGGTAGTGAGGCAAACTGAA
GATTGCAGAGTGA
Found at i:106907812 original size:84 final size:84
Alignment explanation
Indices: 106907633--106907834 Score: 264
Period size: 84 Copynumber: 2.4 Consensus size: 84
106907623 GATTGCAGAG
*
106907633 TGAAAAGTTCAGATTCTGTCTCCCCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
1 TGAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
* ** *
106907698 ATATGACAGGGAAGTAAAT
66 AAATGACAAAGAAGCAAAT
* *
106907717 TGGAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGCAGATTGAAGTCTTCCTG
1 TGAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
**
106907782 AAATAGA-AAAGAAGCAGTT
66 AAAT-GACAAAGAAGCAAAT
* * *
106907801 TGAAAATTTCAGCTTTTGT-TCCCTCGAGATGGTA
1 TGAAAAGTTCAGATTCTGTCT-CCTCGAGATGGTA
106907835 AGGGAGCAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
83 1 0.01
84 100 0.97
85 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (84 bp):
TGAAAAGTTCAGATTCTGTCTCCTCGAGATGGTAGTGAGGCAAACTGAAGATTGAAGTCTTCCTG
AAATGACAAAGAAGCAAAT
Found at i:106907905 original size:45 final size:44
Alignment explanation
Indices: 106907836--106908074 Score: 225
Period size: 44 Copynumber: 5.4 Consensus size: 44
106907826 GAGATGGTAA
* * * * ** *
106907836 GGGAGCAAATCGTAGAAAGCAGATTTGGCAATCCCCATATTGGTG
1 GGGAGCAGATCGAAGATAGCAGATTTGGC-ATCTCTGTATTGATG
* * **
106907881 GGGAGCAGATCGAATATAGTAGATTTGGCATCTCTGTATT-AAC
1 GGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGATG
* *
106907924 GGGAGCATATCGAAGATAGCAGATTTGGCGTCTCTGTATTGATG
1 GGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGATG
* *
106907968 GAGAGCAGATCGAAGATAGCAGATTTGG-AGTCTCTGTATTAGACG
1 GGGAGCAGATCGAAGATAGCAGATTTGGCA-TCTCTGTATT-GATG
* ***
106908013 GGGAGCAGATCGAAGATAGTAGATTT-G-ATGCCTCTGTATTGGCA
1 GGGAGCAGATCGAAGATAGCAGATTTGGCAT--CTCTGTATTGATG
*
106908057 GGGAGCAGATCAAAGATA
1 GGGAGCAGATCGAAGATA
106908075 TCAGCATGAC
Statistics
Matches: 163, Mismatches: 26, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
43 37 0.23
44 66 0.40
45 60 0.37
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (44 bp):
GGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGATG
Found at i:106907989 original size:44 final size:43
Alignment explanation
Indices: 106907881--106908074 Score: 235
Period size: 44 Copynumber: 4.4 Consensus size: 43
106907871 CATATTGGTG
* * * *
106907881 GGGAGCAGATCGAATATAGTAGATTTGGCATCTCTGTATTAAC
1 GGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGAC
* *
106907924 GGGAGCATATCGAAGATAGCAGATTTGGCGTCTCTGTATTGAT
1 GGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGAC
*
106907967 GGAGAGCAGATCGAAGATAGCAGATTTGGAGTCTCTGTATTAGAC
1 GG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT-GAC
* ** * *
106908012 GGGGAGCAGATCGAAGATAGTAGATTTGATGCCTCTGTATTGGC
1 -GGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGAC
*
106908056 AGGGAGCAGATCAAAGATA
1 -GGGAGCAGATCGAAGATA
106908075 TCAGCATGAC
Statistics
Matches: 132, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
43 39 0.30
44 55 0.42
45 36 0.27
46 2 0.02
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.26
Consensus pattern (43 bp):
GGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGAC
Found at i:106908051 original size:89 final size:86
Alignment explanation
Indices: 106907881--106908074 Score: 248
Period size: 89 Copynumber: 2.2 Consensus size: 86
106907871 CATATTGGTG
* * *
106907881 GGGAGCAGATCGAATATAGTAGATTTGGCATCTCTGTATTAACGGGAGCATATCGAAGATAGCAG
1 GGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAACGGGAGCAGATCGAAGATAGCAG
* *
106907946 ATTTGGCGTCTCTGTATTGAT
66 ATTTGACGCCTCTGTATTGAT
106907967 GGAGAGCAGATCGAAGATAGCAGATTTGG-AGTCTCTGTATTAGACGGGGAGCAGATCGAAGATA
1 GG-GAGCAGATCGAAGATAGCAGATTTGGCA-TCTCTGTATTA-AC-GGGAGCAGATCGAAGATA
* *
106908031 GTAGATTTGATGCCTCTGTATTGGCA-
62 GCAGATTTGACGCCTCTGTATT-G-AT
*
106908057 GGGAGCAGATCAAAGATA
1 GGGAGCAGATCGAAGATA
106908075 TCAGCATGAC
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
86 3 0.03
87 35 0.37
88 2 0.02
89 50 0.53
90 3 0.03
91 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.26
Consensus pattern (86 bp):
GGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAACGGGAGCAGATCGAAGATAGCAG
ATTTGACGCCTCTGTATTGAT
Found at i:106909551 original size:3 final size:3
Alignment explanation
Indices: 106909543--106909866 Score: 92
Period size: 3 Copynumber: 111.3 Consensus size: 3
106909533 GCATTATTTC
* * * *
106909543 TAT TAT TAT TAT TAT TAC TAT TAT TA- TAC T-T TAT TGT TAT T-G TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
106909588 T-T TAA TAT CA- TAT CTAT TAT TAT TCT TAT TAA TA- TGT TAT TAG
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
106909631 TAT TTT CTAT TAT TAT TGT TAT TAT TA- TAT TAT TTT TCT TA- TGT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * *
106909675 TAT TAT TTT CTAT TCT TAT CAC CAT TAT TAA CA- TAT CAT TAT TAA
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** *
106909720 TA- TAT T-T T-T TCAA TAT TTT TAT TAT TAT CGT TAT T-T CAT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
106909762 TAT ATCT TAC TAT TA- TATT TAT GAT TTT TAT T-T TAT T-T CTAT TAT
1 TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * *
106909807 TAT T-T TCAT TAC TAT TAT TAT TTT TAT TAA TAT TAT GT-T T-T TAC
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
*
106909851 TAT TAT AAT TAT TAT T
1 TAT TAT TAT TAT TAT T
106909867 TTTGCTACTA
Statistics
Matches: 226, Mismatches: 69, Indels: 52
0.65 0.20 0.15
Matches are distributed among these distances:
2 29 0.13
3 181 0.80
4 16 0.07
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:106909568 original size:9 final size:9
Alignment explanation
Indices: 106909535--106909568 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
106909525 AATATTTTGC
*
106909535 ATTATTTCT
1 ATTATTACT
*
106909544 ATTATTATT
1 ATTATTACT
106909553 ATTATTACT
1 ATTATTACT
106909562 ATTATTA
1 ATTATTA
106909569 TACTTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTATTACT
Found at i:106909672 original size:17 final size:17
Alignment explanation
Indices: 106909640--106909688 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
106909630 GTATTTTCTA
*
106909640 TTATTATTGTTATTAT-
1 TTATTATTTTTATTATG
*
106909656 TATATTATTTTTCTTATG
1 T-TATTATTTTTATTATG
106909674 TTATTATTTTCTATT
1 TTATTATTTT-TATT
106909689 CTTATCACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.04
17 22 0.81
18 4 0.15
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (17 bp):
TTATTATTTTTATTATG
Found at i:106909681 original size:20 final size:18
Alignment explanation
Indices: 106909543--106909664 Score: 60
Period size: 17 Copynumber: 6.9 Consensus size: 18
106909533 GCATTATTTC
**
106909543 TATTATTATTATTATTAC
1 TATTATTATTATTATTGT
106909561 TATTATTA-TACTTTATTGT
1 TATTATTATTA--TTATTGT
* * *
106909580 TATT-GTATT-TTAATAT
1 TATTATTATTATTATTGT
* *
106909596 CA-TATCTATTATTATTCT
1 TATTAT-TATTATTATTGT
* *
106909614 TATTAATA-TGTTATTAG-
1 TATTATTATTATTATT-GT
*
106909631 TATTTTCTATTATTATTGT
1 TATTAT-TATTATTATTGT
106909650 TATTATTA-TATTATT
1 TATTATTATTATTATT
106909665 TTTCTTATGT
Statistics
Matches: 76, Mismatches: 17, Indels: 23
0.66 0.15 0.20
Matches are distributed among these distances:
15 1 0.01
16 6 0.08
17 23 0.30
18 23 0.30
19 23 0.30
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (18 bp):
TATTATTATTATTATTGT
Found at i:106909878 original size:21 final size:22
Alignment explanation
Indices: 106909844--106909886 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
106909834 TAATATTATG
*
106909844 TTTTTACTATTATAA-TTATTA
1 TTTTTACTACTATAATTTATTA
*
106909865 TTTTTGCTACTATAATTTATTA
1 TTTTTACTACTATAATTTATTA
106909887 CTTTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTTACTACTATAATTTATTA
Found at i:106912204 original size:21 final size:22
Alignment explanation
Indices: 106912173--106912215 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
106912163 AAATTAGGCT
106912173 GTTACATTATTAT-TAC-TATA
1 GTTACATTATTATATACATATA
106912193 GTTACTATTATTATATACATATA
1 GTTAC-ATTATTATATACATATA
106912216 TTATATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 8 0.40
22 3 0.15
23 4 0.20
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
GTTACATTATTATATACATATA
Found at i:106912219 original size:13 final size:13
Alignment explanation
Indices: 106912201--106912226 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106912191 TAGTTACTAT
106912201 TATTATATACATA
1 TATTATATACATA
106912214 TATTATATACATA
1 TATTATATACATA
106912227 CTTTTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TATTATATACATA
Found at i:106912378 original size:16 final size:18
Alignment explanation
Indices: 106912357--106912393 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
106912347 ATATTATGTA
106912357 TATATC-TTTTTA-ATAT
1 TATATCTTTTTTATATAT
106912373 TATATCTTTTTTATATAT
1 TATATCTTTTTTATATAT
106912391 TAT
1 TAT
106912394 GTATATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
TATATCTTTTTTATATAT
Found at i:106912383 original size:40 final size:38
Alignment explanation
Indices: 106912333--106912409 Score: 127
Period size: 40 Copynumber: 2.0 Consensus size: 38
106912323 ATATATATCG
106912333 TATATATTTTTTATATATTATGTATATATCTTTTTAATAT
1 TATATATTTTTTATATATTATGTATATA--TTTTTAATAT
*
106912373 TATATCTTTTTTATATATTATGTATATATTTTTAATA
1 TATATATTTTTTATATATTATGTATATATTTTTAATA
106912410 CTAGTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 9 0.25
40 27 0.75
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (38 bp):
TATATATTTTTTATATATTATGTATATATTTTTAATAT
Found at i:106912420 original size:22 final size:21
Alignment explanation
Indices: 106912333--106912421 Score: 69
Period size: 22 Copynumber: 4.2 Consensus size: 21
106912323 ATATATATCG
* *
106912333 TATATATTTTTTATATATTAT
1 TATATATTTTTAATATAGTAT
106912354 GTATATATCTTTT--TA-A-TAT
1 -TATATAT-TTTTAATATAGTAT
* * *
106912373 TATATCTTTTTTATATATTAT
1 TATATATTTTTAATATAGTAT
106912394 GTATATATTTTTAATACTAGTAT
1 -TATATATTTTTAATA-TAGTAT
106912417 TATAT
1 TATAT
106912422 GTTGTATATA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
17 4 0.07
18 6 0.11
19 5 0.09
20 2 0.04
21 5 0.09
22 25 0.45
23 9 0.16
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (21 bp):
TATATATTTTTAATATAGTAT
Found at i:106912759 original size:41 final size:41
Alignment explanation
Indices: 106912714--106912820 Score: 169
Period size: 41 Copynumber: 2.6 Consensus size: 41
106912704 GGTTTTTGTG
* *
106912714 TTTTGGTAAAACGTCGCTAAAAGTCGGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
*
106912755 TTTTGGTAAAATGCCGCTAAAAGTCAGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
* *
106912796 TTCTAGTAAAACGCCGCTAAAAGTC
1 TTTTGGTAAAACGCCGCTAAAAGTC
106912821 TATACTTAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (41 bp):
TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
Found at i:106913324 original size:7 final size:7
Alignment explanation
Indices: 106913314--106913438 Score: 65
Period size: 7 Copynumber: 17.6 Consensus size: 7
106913304 TATTAAACCG
106913314 AAATAAA
1 AAATAAA
106913321 AAAT--A
1 AAATAAA
*
106913326 AACTCAAA
1 AAAT-AAA
106913334 AAATAAA
1 AAATAAA
*
106913341 AATTAAA
1 AAATAAA
*
106913348 AAATTTAA
1 AAA-TAAA
* *
106913356 AATTTAA
1 AAATAAA
* *
106913363 AATTTAA
1 AAATAAA
106913370 AAATAAA
1 AAATAAA
106913377 AAATTAAA
1 AAA-TAAA
**
106913385 ATTTAAA
1 AAATAAA
*
106913392 AATTAAA
1 AAATAAA
*
106913399 AATTAAA
1 AAATAAA
*
106913406 AATTAAA
1 AAATAAA
*
106913413 AATTAAA
1 AAATAAA
*
106913420 AAACTTAA
1 AAA-TAAA
*
106913428 AAATTAA
1 AAATAAA
106913435 AAAT
1 AAAT
106913439 TATTCAATAG
Statistics
Matches: 99, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
5 4 0.04
7 75 0.76
8 20 0.20
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATAAA
Found at i:106913348 original size:14 final size:14
Alignment explanation
Indices: 106913317--106913437 Score: 111
Period size: 14 Copynumber: 8.4 Consensus size: 14
106913307 TAAACCGAAA
*
106913317 TAAAAAAT-AAACT
1 TAAAAAATAAAAAT
*
106913330 CAAAAAATAAAAAT
1 TAAAAAATAAAAAT
*
106913344 TAAAAAATTTAAAATT
1 TAAAAAA--TAAAAAT
**
106913360 TAAAATTTAAAAA-
1 TAAAAAATAAAAAT
*
106913373 TAAAAAATTAAAATT
1 TAAAAAA-TAAAAAT
*
106913388 TAAAAATTAAAAAT
1 TAAAAAATAAAAAT
*
106913402 TAAAAATTAAAAAT
1 TAAAAAATAAAAAT
106913416 TAAAAAACTTAAAAAT
1 TAAAAAA--TAAAAAT
106913432 TAAAAA
1 TAAAAA
106913438 TTATTCAATA
Statistics
Matches: 88, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
13 12 0.14
14 46 0.52
15 6 0.07
16 24 0.27
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAAAAATAAAAAT
Done.