Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 326 of 332
Found at i:106913357 original size:21 final size:22
Alignment explanation
Indices: 106913331--106913437 Score: 128
Period size: 22 Copynumber: 4.9 Consensus size: 22
106913321 AAATAAACTC
*
106913331 AAAAAATAAAAATTAAAAAATT
1 AAAAATTAAAAATTAAAAAATT
* * * *
106913353 TAAAATTTAAAATTTAAAAATA
1 AAAAATTAAAAATTAAAAAATT
*
106913375 AAAAATT-AAAATTTAAAAATT
1 AAAAATTAAAAATTAAAAAATT
106913396 AAAAATTAAAAATT-AAAAATT
1 AAAAATTAAAAATTAAAAAATT
106913417 AAAAAACTTAAAAATTAAAAA
1 -AAAAA-TTAAAAATTAAAAA
106913438 TTATTCAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
21 27 0.36
22 34 0.46
23 9 0.12
24 4 0.05
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAATTAAAAATTAAAAAATT
Found at i:106913439 original size:7 final size:7
Alignment explanation
Indices: 106913331--106913440 Score: 139
Period size: 7 Copynumber: 15.1 Consensus size: 7
106913321 AAATAAACTC
*
106913331 AAAAAAT
1 AAAAATT
106913338 AAAAATT
1 AAAAATT
106913345 AAAAAATTT
1 -AAAAA-TT
*
106913354 AAAATTT
1 AAAAATT
*
106913361 AAAATTT
1 AAAAATT
*
106913368 AAAAATA
1 AAAAATT
106913375 AAAAATT
1 AAAAATT
*
106913382 AAAATTT
1 AAAAATT
106913389 AAAAATT
1 AAAAATT
106913396 AAAAATT
1 AAAAATT
106913403 AAAAATT
1 AAAAATT
106913410 AAAAATT
1 AAAAATT
106913417 AAAAAACTT
1 -AAAAA-TT
106913426 AAAAATT
1 AAAAATT
106913433 AAAAATT
1 AAAAATT
106913440 A
1 A
106913441 TTCAATAGTG
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
7 69 0.75
8 19 0.21
9 4 0.04
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:106917185 original size:19 final size:21
Alignment explanation
Indices: 106917157--106917204 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
106917147 TTATTATTTA
106917157 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
106917177 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
106917197 TTTTAGTT
1 TTTTAGTT
106917205 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:106919018 original size:19 final size:19
Alignment explanation
Indices: 106918970--106919018 Score: 75
Period size: 17 Copynumber: 2.7 Consensus size: 19
106918960 AATCTTTAAG
106918970 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
106918989 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
106919006 GATATGTAATCTT
1 GATATGCAATCTT
106919019 GAAGATTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 17 0.63
19 10 0.37
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:106926091 original size:25 final size:25
Alignment explanation
Indices: 106926059--106926172 Score: 81
Period size: 25 Copynumber: 4.5 Consensus size: 25
106926049 CTAAAGATTC
*
106926059 TTTA-TATTGTTTGTTTTAAAATGT
1 TTTATTATTATTTGTTTTAAAATGT
* ** *
106926083 TTTATTATTATTTATTTTAAGTTTT
1 TTTATTATTATTTGTTTTAAAATGT
* *
106926108 TTTATGTAGTATTTGTTTTAAACTGT
1 TTTAT-TATTATTTGTTTTAAAATGT
**
106926134 TTTATCATATTATTCAT-TTTTAACTTGT
1 TTTAT--TATTATT--TGTTTTAAAATGT
106926162 TTTA-TATTATT
1 TTTATTATTATT
106926173 ATTCTAGATT
Statistics
Matches: 71, Mismatches: 14, Indels: 9
0.76 0.15 0.10
Matches are distributed among these distances:
24 4 0.06
25 27 0.38
26 20 0.28
27 6 0.08
28 13 0.18
29 1 0.01
ACGTcount: A:0.25, C:0.04, G:0.08, T:0.64
Consensus pattern (25 bp):
TTTATTATTATTTGTTTTAAAATGT
Found at i:106926127 original size:26 final size:25
Alignment explanation
Indices: 106926068--106926138 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 25
106926058 CTTTATATTG
*
106926068 TTTGTTTTAAAATGTTTTATTATTA
1 TTTGTTTTAAAATGTTTTATTAGTA
* ** *
106926093 TTTATTTTAAGTTTTTTTATGTAGTA
1 TTTGTTTTAAAATGTTTTAT-TAGTA
*
106926119 TTTGTTTTAAACTGTTTTAT
1 TTTGTTTTAAAATGTTTTAT
106926139 CATATTATTC
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
25 16 0.44
26 20 0.56
ACGTcount: A:0.24, C:0.01, G:0.10, T:0.65
Consensus pattern (25 bp):
TTTGTTTTAAAATGTTTTATTAGTA
Found at i:106926155 original size:28 final size:28
Alignment explanation
Indices: 106926085--106926176 Score: 77
Period size: 27 Copynumber: 3.4 Consensus size: 28
106926075 TAAAATGTTT
* *
106926085 TATTATTATTTA-TTTTAAGTT-TTTT-
1 TATTATTATTCATTTTTAACTTGTTTTA
* ** *
106926110 TATGTAGTATTTGTTTTAAAC-TGTTTTA
1 TAT-TATTATTCATTTTTAACTTGTTTTA
106926138 TCA-TATTATTCATTTTTAACTTGTTTTA
1 T-ATTATTATTCATTTTTAACTTGTTTTA
106926166 TATTATTATTC
1 TATTATTATTC
106926177 TAGATTATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
25 3 0.06
26 8 0.15
27 23 0.44
28 17 0.33
29 1 0.02
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (28 bp):
TATTATTATTCATTTTTAACTTGTTTTA
Found at i:106926855 original size:17 final size:17
Alignment explanation
Indices: 106926835--106926868 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106926825 GGTTCGTCTT
106926835 GATTTATCCAAGCATCC
1 GATTTATCCAAGCATCC
*
106926852 GATTTATTCAAGCATCC
1 GATTTATCCAAGCATCC
106926869 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (17 bp):
GATTTATCCAAGCATCC
Found at i:106933623 original size:22 final size:22
Alignment explanation
Indices: 106933598--106933642 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
106933588 TTTAATAAAG
106933598 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
106933620 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
106933642 A
1 A
106933643 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:106937419 original size:22 final size:22
Alignment explanation
Indices: 106937366--106937410 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
106937356 TTTAATAAAG
*
106937366 AAAATATCTACAAAATATTCCT
1 AAAATATTTACAAAATATTCCT
*
106937388 AAAATATTTACAGAATATTCCT
1 AAAATATTTACAAAATATTCCT
106937410 A
1 A
106937411 CAGTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATTTACAAAATATTCCT
Found at i:106938302 original size:19 final size:20
Alignment explanation
Indices: 106938259--106938301 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
106938249 ATATCAGTAT
106938259 TTTTATCCTGAATTTTAGAA
1 TTTTATCCTGAATTTTAGAA
* * *
106938279 TTTTATCGTGATTTTTAGTA
1 TTTTATCCTGAATTTTAGAA
106938299 TTT
1 TTT
106938302 AAATTTGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.58
Consensus pattern (20 bp):
TTTTATCCTGAATTTTAGAA
Found at i:106938933 original size:17 final size:18
Alignment explanation
Indices: 106938901--106938938 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 18
106938891 TACACCTTCT
106938901 TTACTAATAATTTTTTTAA
1 TTACTAAT-ATTTTTTTAA
106938920 TTACTAAT-TTTTTTTAA
1 TTACTAATATTTTTTTAA
106938937 TT
1 TT
106938939 TTAAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
19 8 0.42
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (18 bp):
TTACTAATATTTTTTTAA
Found at i:106939822 original size:29 final size:28
Alignment explanation
Indices: 106939780--106939850 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
106939770 TTTAATTAAT
*
106939780 TTTTTTAAAATTTAT-ATTATTAAAAATA
1 TTTTTTAAATTTTATAATT-TTAAAAATA
*
106939808 TTTTTTAATATTTTATAATTTTAAAAGTA
1 TTTTTTAA-ATTTTATAATTTTAAAAATA
* *
106939837 ATTTTTAAAATTTA
1 TTTTTTAAATTTTA
106939851 AAAATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 13 0.35
29 21 0.57
30 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTTTTAAATTTTATAATTTTAAAAATA
Found at i:106939833 original size:28 final size:29
Alignment explanation
Indices: 106939780--106939850 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 29
106939770 TTTAATTAAT
*
106939780 TTTTTTAAAATTTATATTATTAAAAA-TA
1 TTTTTTAAATTTTATATTATTAAAAAGTA
106939808 TTTTTTAATATTTTATAATT-TT-AAAAGTA
1 TTTTTTAA-ATTTTAT-ATTATTAAAAAGTA
* *
106939837 ATTTTTAAAATTTA
1 TTTTTTAAATTTTA
106939851 AAAATATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 17 0.46
29 17 0.46
30 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTTTAAATTTTATATTATTAAAAAGTA
Found at i:106939850 original size:20 final size:20
Alignment explanation
Indices: 106939813--106939868 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
106939803 AAATATTTTT
* *
106939813 TAATATTTTATAATTTTAAAAG
1 TAAT-TTTTA-AAATTTAAAAA
106939835 TAATTTTTAAAATTTAAAAA
1 TAATTTTTAAAATTTAAAAA
*
106939855 T-ATTTTTATAATTT
1 TAATTTTTAAAATTT
106939869 TTATGATGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.39
20 10 0.32
21 5 0.16
22 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TAATTTTTAAAATTTAAAAA
Found at i:106939871 original size:21 final size:20
Alignment explanation
Indices: 106939814--106939869 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
106939804 AATATTTTTT
106939814 AATA-TTTTATAATTTTAAA
1 AATATTTTTATAATTTTAAA
* *
106939833 AGTAATTTTTA-AAATTTAAA
1 AAT-ATTTTTATAATTTTAAA
106939853 AATATTTTTATAATTTT
1 AATATTTTTATAATTTT
106939870 TATGATGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.30
20 16 0.53
21 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
AATATTTTTATAATTTTAAA
Found at i:106954546 original size:19 final size:20
Alignment explanation
Indices: 106954524--106954564 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
106954514 TTTATTTTAA
106954524 AATT-AAAAAAACTATTAGT
1 AATTAAAAAAAACTATTAGT
*
106954543 AATTAAAAAAAATTATTAGT
1 AATTAAAAAAAACTATTAGT
106954563 AA
1 AA
106954565 AGAGGCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTAAAAAAAACTATTAGT
Found at i:106962238 original size:15 final size:16
Alignment explanation
Indices: 106962220--106962249 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106962210 TATATAATTA
106962220 TAATAAAA-AAATAAG
1 TAATAAAAGAAATAAG
106962235 TAATAAAAGAAATAA
1 TAATAAAAGAAATAA
106962250 AGAAAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
TAATAAAAGAAATAAG
Found at i:106962309 original size:15 final size:16
Alignment explanation
Indices: 106962284--106962313 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106962274 AGAAGGAAAA
106962284 AAAGAAAGAAAAAGAG
1 AAAGAAAGAAAAAGAG
106962300 AAAG-AAGAAAAAGA
1 AAAGAAAGAAAAAGA
106962314 AAGAGAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAAAAAGAG
Found at i:106967446 original size:39 final size:39
Alignment explanation
Indices: 106967400--106967480 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
106967390 CATTTTTTTA
* *
106967400 ATGTGGTACCTATATTATTTTTTTAATTTAATTTAATGT
1 ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
*
106967439 ATGTGGTACCTATATTATTTTTTTGATTCAATTTAATAT
1 ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
106967478 ATG
1 ATG
106967481 GATTTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.54
Consensus pattern (39 bp):
ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
Found at i:106970256 original size:13 final size:13
Alignment explanation
Indices: 106970195--106970245 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
106970185 TTCTTCATTG
*
106970195 CTTTTGAAAAGTG
1 CTTTTGAAAAGTA
* *
106970208 CTGTGGAAAAGTA
1 CTTTTGAAAAGTA
*
106970221 CTTTTGAGAAGTA
1 CTTTTGAAAAGTA
106970234 CTTTTGAAAAGT
1 CTTTTGAAAAGT
106970246 GTTTTGGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:106971232 original size:30 final size:30
Alignment explanation
Indices: 106971196--106971349 Score: 240
Period size: 30 Copynumber: 5.2 Consensus size: 30
106971186 TGTATTTAAA
* *
106971196 ATTTTAAAAATAAAAAAATATATGTAATGG
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
*
106971226 ATTTTAAAAATAAAAAAATACATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
106971256 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
*
106971286 ATTTTCAAAAT-AAAAAA-ATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* *
106971314 ATTCTAGAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
106971344 ATTTTA
1 ATTTTA
106971350 TTAAATGAAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
28 19 0.17
29 12 0.11
30 82 0.73
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (30 bp):
ATTTTAAAAATAAAAAAATATATGTAGTGT
Found at i:106971544 original size:21 final size:21
Alignment explanation
Indices: 106971520--106971572 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
106971510 CATTGTTTCT
* *
106971520 AATCTCACCGTTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
106971541 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
106971562 AATCTCACCGC
1 AATCTCACCGC
106971573 CACCGCTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:106978321 original size:21 final size:20
Alignment explanation
Indices: 106978295--106978352 Score: 84
Period size: 19 Copynumber: 2.9 Consensus size: 20
106978285 TAGAACTTCA
106978295 TAAAAATTATTAAAATATTTT
1 TAAAAATTA-TAAAATATTTT
106978316 TAAAAATTA-AAAAT-TATTT
1 TAAAAATTATAAAATAT-TTT
106978335 TAAAAATTATAAAATATT
1 TAAAAATTATAAAATATT
106978353 AAATTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.03
19 17 0.50
20 6 0.18
21 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAAATTATAAAATATTTT
Found at i:106978347 original size:28 final size:29
Alignment explanation
Indices: 106978295--106978355 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 29
106978285 TAGAACTTCA
*
106978295 TAAAAATTATTAAAATATTTTTAAAA-AT
1 TAAAAATTATTAAAATATTTATAAAATAT
106978323 TAAAAATTATTTTAAAA-A-TTATAAAATAT
1 TAAAAATTA--TTAAAATATTTATAAAATAT
106978352 TAAA
1 TAAA
106978356 TTTTTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 16 0.55
29 7 0.24
30 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (29 bp):
TAAAAATTATTAAAATATTTATAAAATAT
Found at i:106978739 original size:6 final size:6
Alignment explanation
Indices: 106978728--106978765 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
106978718 ACCATCCTCT
106978728 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TC
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TC
106978766 GCTGTTATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.34, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTTCA
Found at i:106992944 original size:32 final size:32
Alignment explanation
Indices: 106992908--106992972 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
106992898 TGTATGCATT
106992908 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106992940 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106992972 T
1 T
106992973 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:106997320 original size:7 final size:7
Alignment explanation
Indices: 106997308--106997336 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
106997298 TACATACATT
106997308 TATTAAA
1 TATTAAA
106997315 TATTAAA
1 TATTAAA
106997322 TATTAAA
1 TATTAAA
106997329 TA-TAAA
1 TATTAAA
106997335 TA
1 TA
106997337 AATACGAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TATTAAA
Found at i:107001006 original size:25 final size:25
Alignment explanation
Indices: 107000956--107001006 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
107000946 TATTTAAAAT
* * *
107000956 ATTTAAAATTTTATAAAAACATTAA
1 ATTTAAAACTCTATAAAAACAATAA
*
107000981 ATTTAAAACTCTATAAAAATAATAA
1 ATTTAAAACTCTATAAAAACAATAA
107001006 A
1 A
107001007 AATTATAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (25 bp):
ATTTAAAACTCTATAAAAACAATAA
Found at i:107003869 original size:20 final size:20
Alignment explanation
Indices: 107003844--107003890 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
107003834 TGTCTTTGTC
* **
107003844 ATATTTTTTTTTTGTATCAT
1 ATATTTTTTTGTCCTATCAT
107003864 ATATTTTTTTGTCCTATCAT
1 ATATTTTTTTGTCCTATCAT
107003884 ATATTTT
1 ATATTTT
107003891 GTTAACTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.09, G:0.04, T:0.66
Consensus pattern (20 bp):
ATATTTTTTTGTCCTATCAT
Found at i:107004604 original size:131 final size:132
Alignment explanation
Indices: 107004426--107004676 Score: 389
Period size: 131 Copynumber: 1.9 Consensus size: 132
107004416 TCATTCATTC
** *
107004426 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* *
107004491 TTGGGTTGCAATTTCGCGTTTG-CTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCT
66 TTGGGTTGCAATTTCGCGTTTGTC-CAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCT
107004555 TTT
130 TTT
*
107004558 AAAA-TTCTTCAAAACGAAGACGAGATTTGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
107004622 TTGGGTTGCAATTTTGCGTTTGTCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACTTCAAAATTTCA
107004677 TTCATGTCTT
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
131 103 0.95
132 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:107004686 original size:131 final size:132
Alignment explanation
Indices: 107004426--107004707 Score: 388
Period size: 131 Copynumber: 2.1 Consensus size: 132
107004416 TCATTCATTC
* ** *
107004426 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * *
107004491 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
107004556 -T
131 CT
* *
107004557 TAAAATTCTTCAAAACGAAGACGAGATTTGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
107004622 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCT
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCT
107004686 TCT
130 TCT
* *
107004689 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
107004708 AGCTATATTC
Statistics
Matches: 131, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 113 0.86
132 17 0.13
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
CT
Found at i:107004739 original size:131 final size:131
Alignment explanation
Indices: 107004434--107004781 Score: 357
Period size: 131 Copynumber: 2.7 Consensus size: 131
107004424 TCAAAAGTTC
*
107004434 TTCAAAACGAAGACGAGATTCG-ATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGAACGTTT-GCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * * *
107004498 GCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAAT
*
107004563 TC
130 TA
* *
107004565 TTCAAAACGAAGACGAGATTTGATAC-TTAGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGA-ACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * * * * *
107004629 GCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCTTCTAAAA
65 GCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT-TAAAA
107004693 ATTA
128 ATTA
* * * * * * * * *
107004697 TTTAAAACGAA-AGCTATATTCG-GCGTTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGC
1 TTCAAAACGAAGA-CGAGATTCGAACGTTTG-CAATTCGCGGAATCGTGCCCTAACGTGTTGGGT
** * *
107004759 TGTGATTTCTCGTTTGTTCAAAA
64 TGCAATTTCGCGTTTGCTCAAAA
107004782 CGATCGAATA
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
130 2 0.01
131 143 0.80
132 33 0.18
133 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACGAGATTCGAACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAATT
A
Found at i:107022505 original size:22 final size:22
Alignment explanation
Indices: 107022480--107022524 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
107022470 TGCAATTAAA
*
107022480 CTACCAATAATTTGCAG-ACAAG
1 CTACCAATAAGTTGC-GCACAAG
*
107022502 CTACCAGTAAGTTGCGCACAAG
1 CTACCAATAAGTTGCGCACAAG
107022524 C
1 C
107022525 CCAAAACCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20
Consensus pattern (22 bp):
CTACCAATAAGTTGCGCACAAG
Found at i:107024377 original size:43 final size:43
Alignment explanation
Indices: 107024315--107024467 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
107024305 AGCTCGTACA
* * **** * *
107024315 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCTCATATCG
1 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCACATAACG
107024357 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCACATAACG
1 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCACATAACG
* *
107024400 ATGCCAAT-GTCCCAGAC-ATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATAG-CCCAG-CTATGGTCTTACACAAAATCACATA-ACG
**
107024443 ATGCCAAT-GTCCCAGAGATGGTCTT
1 ATGCCAATAG-CCCAGCTATGGTCTT
107024468 GCATGGAATC
Statistics
Matches: 95, Mismatches: 11, Indels: 9
0.83 0.10 0.08
Matches are distributed among these distances:
42 7 0.07
43 87 0.92
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCACATAACG
Found at i:107028941 original size:47 final size:48
Alignment explanation
Indices: 107028808--107029031 Score: 199
Period size: 47 Copynumber: 4.6 Consensus size: 48
107028798 ATAGTAAAAC
* * *
107028808 TATGGTCTTACAC--ATAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTATACGGATAG-CACATATCAC--ACCGATGCCATAGCCCAGA
* * * *
107028857 CATGGTCTTACACGGAT--CACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTATACGGATAGCACATATCACACCGATGCCATAGCCCAGA
* * *
107028903 TATGGTCTTATAC-AATAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTATACGGATAGCACATATCACACCGATGCCATAGCCCAGA
* *
107028950 TATGGTCTTATACGGA-AGCACATATCACATTTCTCCGAAGCCATAGCCCAGC
1 TATGGTCTTATACGGATAGCACATATCACA-----CCGATGCCATAGCCCAGA
* * *
107029002 TATGGTCTTATACGGAAATCACATTTCACA
1 TATGGTCTTATACGGATAGCACATATCACA
107029032 TGCTGCCATG
Statistics
Matches: 147, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.01
46 26 0.18
47 53 0.36
48 11 0.07
49 12 0.08
51 2 0.01
52 30 0.20
53 11 0.07
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (48 bp):
TATGGTCTTATACGGATAGCACATATCACACCGATGCCATAGCCCAGA
Found at i:107031445 original size:10 final size:10
Alignment explanation
Indices: 107031430--107031459 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
107031420 AAATCTAGAG
107031430 TTTTCTTCAT
1 TTTTCTTCAT
107031440 TTTTCTTCAT
1 TTTTCTTCAT
107031450 TTTTCTTCAT
1 TTTTCTTCAT
107031460 CTTCATCAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTCTTCAT
Found at i:107032347 original size:52 final size:52
Alignment explanation
Indices: 107032269--107032401 Score: 160
Period size: 52 Copynumber: 2.5 Consensus size: 52
107032259 TGACGGAAAG
* ** *
107032269 ATGTGATAAGTGCGCCCGTTTAAGACCAAAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGTGCA
* **
107032321 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGTGCA
**
107032373 ACATGATGATGTGATT-CCGTATAAGACCA
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCA
107032402 TATTTGGGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
52 50 0.71
53 18 0.26
54 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGTGCA
Found at i:107038007 original size:45 final size:45
Alignment explanation
Indices: 107037943--107038114 Score: 267
Period size: 45 Copynumber: 3.9 Consensus size: 45
107037933 CTGCAGTACA
*
107037943 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATATT
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATT
* *
107037988 ATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAAT
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATT
*
107038033 ATTCGGGCCTTTGAGTCTAGCAGGCTATAATGCCGGTGAGATATT
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATT
* * *
107038078 ATTCGGGCC-TCGAGCCTAGTAGGCGA-AATGCCGGTGA
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
107038115 ATGAATTCGG
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
43 11 0.09
44 13 0.11
45 93 0.79
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (45 bp):
ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATT
Found at i:107047903 original size:6 final size:6
Alignment explanation
Indices: 107047892--107047930 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
107047882 ATCCCCTTCT
*
107047892 AGAGGA AGAGGA AGAAGA AGAGGA AGAGGA AGAGGA AGA
1 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGA
107047931 TGATTTGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (6 bp):
AGAGGA
Found at i:107051555 original size:25 final size:27
Alignment explanation
Indices: 107051511--107051562 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
107051501 ATACGCAAAG
107051511 ATTTAAAATAAATCATATATGGAAGAA
1 ATTTAAAATAAATCATATATGGAAGAA
* *
107051538 ATTTAAAATGAAT-A-ATATGTAAGAA
1 ATTTAAAATAAATCATATATGGAAGAA
107051563 TAATTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 1 0.04
27 12 0.52
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.31
Consensus pattern (27 bp):
ATTTAAAATAAATCATATATGGAAGAA
Found at i:107051567 original size:27 final size:25
Alignment explanation
Indices: 107051511--107051592 Score: 67
Period size: 29 Copynumber: 3.0 Consensus size: 25
107051501 ATACGCAAAG
*
107051511 ATTTAAAATAAATCATATATGGAAG-AA
1 ATTTAAAAT-AAT-A-ATATGTAAGAAA
107051538 ATTTAAAATGAATAATATGTAAGAATA
1 ATTTAAAAT-AATAATATGTAAGAA-A
*
107051565 ATTTTGAAAATATATAATATATAAGAAA
1 A-TTT-AAAATA-ATAATATGTAAGAAA
107051593 TATGTATAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
25 8 0.17
26 2 0.04
27 14 0.30
28 5 0.11
29 18 0.38
ACGTcount: A:0.56, C:0.01, G:0.10, T:0.33
Consensus pattern (25 bp):
ATTTAAAATAATAATATGTAAGAAA
Found at i:107051852 original size:25 final size:27
Alignment explanation
Indices: 107051793--107051854 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
107051783 TAATAAATAA
*
107051793 TTTAAAATGAATGACGCATAAGGCGAGT
1 TTTAAAATGAATGACG-ATAAGGCGAAT
*
107051821 TTATAAAATGAATGATG-TAAGG-GAAT
1 TT-TAAAATGAATGACGATAAGGCGAAT
107051847 TTTAAAAT
1 TTTAAAAT
107051855 CTATATTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 6 0.19
26 5 0.16
27 5 0.16
28 2 0.06
29 13 0.42
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (27 bp):
TTTAAAATGAATGACGATAAGGCGAAT
Found at i:107051990 original size:21 final size:20
Alignment explanation
Indices: 107051966--107052012 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
107051956 AAAATGGAGG
107051966 TATAAACATAACTTTAAAATA
1 TATAAACATAA-TTTAAAATA
**
107051987 TATATAAGTTAATTTAAAATA
1 TATA-AACATAATTTAAAATA
107052008 -ATAAA
1 TATAAA
107052013 TAAGAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 3 0.13
21 13 0.57
22 5 0.22
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
TATAAACATAATTTAAAATA
Found at i:107052035 original size:21 final size:21
Alignment explanation
Indices: 107051978--107052040 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
107051968 TAAACATAAC
107051978 TTTAAAATATAT-ATAAGTTAA
1 TTTAAAATATATAATAAG-TAA
107051999 TTTAAAATA-ATAAATAAG-AA
1 TTTAAAATATAT-AATAAGTAA
* *
107052019 GTTTAATATATATAATATGTAA
1 -TTTAAAATATATAATAAGTAA
107052041 AAGAATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
20 4 0.11
21 22 0.63
22 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (21 bp):
TTTAAAATATATAATAAGTAA
Found at i:107055359 original size:27 final size:26
Alignment explanation
Indices: 107055319--107055459 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
107055309 AGGAAGAGTC
*
107055319 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
107055346 CTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
107055373 CTGGTGGCTATGACACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
107055400 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
107055427 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
107055454 CTGGTG
1 CTGGTG
107055460 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.10
27 85 0.88
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:107055401 original size:54 final size:54
Alignment explanation
Indices: 107055319--107055457 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 54
107055309 AGGAAGAGTC
*
107055319 CTGGTGGCTATGCCACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGACACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
* *
107055373 CTGGTGGCTATGACACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGACACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
*
107055427 CTGGTGGCTCT-ACCACAA-TATCTGTATCTGG
1 CTGGTGGCTATGA-CACAATTATCTG-ATCTGG
107055458 TGACTTCGTC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
53 7 0.09
54 71 0.91
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGACACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
Found at i:107060699 original size:14 final size:16
Alignment explanation
Indices: 107060674--107060705 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
107060664 AATTAGAAAG
107060674 AAAAAGTGAAAAA-AA
1 AAAAAGTGAAAAACAA
107060689 AAAAAGT-AAAAACAA
1 AAAAAGTGAAAAACAA
107060704 AA
1 AA
107060706 CGTGAGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.81, C:0.03, G:0.09, T:0.06
Consensus pattern (16 bp):
AAAAAGTGAAAAACAA
Found at i:107086338 original size:3 final size:3
Alignment explanation
Indices: 107086330--107086358 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
107086320 AGTCAAGAGA
107086330 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
107086359 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:107087871 original size:18 final size:17
Alignment explanation
Indices: 107087837--107087878 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
107087827 TAATTATATA
107087837 ATAAATAATTTTAAAATT
1 ATAAA-AATTTTAAAATT
*
107087855 ATAAAAATATTTGAAATT
1 ATAAAAAT-TTTAAAATT
107087873 A-AAAAA
1 ATAAAAA
107087879 AAGCATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
ATAAAAATTTTAAAATT
Found at i:107088012 original size:30 final size:31
Alignment explanation
Indices: 107087952--107088022 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
107087942 AAAAAATAAT
* * *
107087952 AATTTAATTCTTTTTAAAATATTGATGGTTA
1 AATTTAACTATTTTTAAAATATTGAAGGTTA
*
107087983 AATTTGACTATTTTTAAAA-ATTGAAGGTTA
1 AATTTAACTATTTTTAAAATATTGAAGGTTA
107088013 AATTTAACTA
1 AATTTAACTA
107088023 AAAAATAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.46
Consensus pattern (31 bp):
AATTTAACTATTTTTAAAATATTGAAGGTTA
Found at i:107089313 original size:12 final size:12
Alignment explanation
Indices: 107089273--107089313 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
107089263 ATGTTATAAA
107089273 ATTTTAAAA-TT
1 ATTTTAAAATTT
*
107089284 ATTTTTAAATCTT
1 ATTTTAAAAT-TT
107089297 -TTTTAAAATTT
1 ATTTTAAAATTT
107089308 ATTTTA
1 ATTTTA
107089314 CAGTTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 10 0.40
12 13 0.52
13 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTTAAAATTT
Found at i:107089462 original size:22 final size:21
Alignment explanation
Indices: 107089426--107089472 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
107089416 TATATTCTTT
*
107089426 TTTCTAGATTTTATATATATA
1 TTTCTAAATTTTATATATATA
*
107089447 TTTCTAAATTTTTATATATTTA
1 TTTCTAAA-TTTTATATATATA
107089469 TTTC
1 TTTC
107089473 CATTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTCTAAATTTTATATATATA
Found at i:107089477 original size:20 final size:21
Alignment explanation
Indices: 107089434--107089481 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
107089424 TTTTTCTAGA
107089434 TTTTATATATATATTTCTAAAT
1 TTTTATATATATATTTC-AAAT
* *
107089456 TTTTATATATTTATTTC-CAT
1 TTTTATATATATATTTCAAAT
107089476 TTTTAT
1 TTTTAT
107089482 TTTTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
22 16 0.67
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATATATATATTTCAAAT
Found at i:107093825 original size:21 final size:20
Alignment explanation
Indices: 107093784--107093825 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
107093774 GAAAAAAATC
*
107093784 AAATCCAGGATAAAATCCTG
1 AAATCCAGGATAAAATACTG
*
107093804 AAATTCAGGATAAAAATACTG
1 AAATCCAGGAT-AAAATACTG
107093825 A
1 A
107093826 TGTGGTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (20 bp):
AAATCCAGGATAAAATACTG
Found at i:107100076 original size:53 final size:53
Alignment explanation
Indices: 107100013--107100119 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
107100003 TGTAGACTTT
*
107100013 GGCTGTTAAGCTACTTAATTTGGTATTATTGAGTTCACCAAATATCATTTGTG
1 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
107100066 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
1 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
107100119 G
1 G
107100120 ATAACATCAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (53 bp):
GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
Found at i:107107565 original size:12 final size:12
Alignment explanation
Indices: 107107548--107107572 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107107538 TGCCCCCTTG
107107548 TATTCGCCCCTA
1 TATTCGCCCCTA
107107560 TATTCGCCCCTA
1 TATTCGCCCCTA
107107572 T
1 T
107107573 TAGTTAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.40, G:0.08, T:0.36
Consensus pattern (12 bp):
TATTCGCCCCTA
Found at i:107111118 original size:37 final size:37
Alignment explanation
Indices: 107111061--107111165 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
107111051 TATGATCACT
*
107111061 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
107111096 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
107111133 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
107111166 TAAAGCTATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 6 0.09
36 4 0.06
37 54 0.84
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:107111197 original size:46 final size:46
Alignment explanation
Indices: 107111129--107111488 Score: 472
Period size: 46 Copynumber: 7.6 Consensus size: 46
107111119 TAAGTGTAGC
* * **
107111129 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
107111175 CACTTATCACTTTGTCTA-TTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTC-ACTTGATCAGATAAGTATAGCCGAAGCTAT
*
107111221 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
107111267 -ACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
107111318 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
107111364 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * ** *
107111410 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
107111462 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
107111489 AGTACTCAAA
Statistics
Matches: 282, Mismatches: 17, Indels: 30
0.86 0.05 0.09
Matches are distributed among these distances:
45 10 0.04
46 187 0.66
47 1 0.00
48 1 0.00
50 2 0.01
51 33 0.12
52 48 0.17
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:107111394 original size:143 final size:144
Alignment explanation
Indices: 107111140--107111488 Score: 630
Period size: 143 Copynumber: 2.4 Consensus size: 144
107111130 ACTTATCACT
*
107111140 TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTA-TTGATCAGATA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTC-ACTTGATCAGATA
107111204 AGTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTA-TA
65 AGTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTA
107111268 CTTATCACTTTCCAC
130 CTTATCACTTTCCAC
* *
107111283 TTGTCACTTGATCAGATAAGTATAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
107111348 GTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTAC
66 GTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTAC
107111413 TTATCACTTTCCAC
131 TTATCACTTTCCAC
* *
107111427 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGA
107111489 AGTACTCAAA
Statistics
Matches: 197, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
142 1 0.01
143 121 0.61
144 75 0.38
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (144 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTAC
TTATCACTTTCCAC
Found at i:107114387 original size:18 final size:18
Alignment explanation
Indices: 107114358--107114394 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
107114348 TTTAATTACT
107114358 AACAAGGTTCCATCTCTTA
1 AACAAGGTTCCATC-CTTA
107114377 AACAA-GTTCCATCCTTA
1 AACAAGGTTCCATCCTTA
107114394 A
1 A
107114395 TCCACATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 8 0.44
19 5 0.28
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (18 bp):
AACAAGGTTCCATCCTTA
Found at i:107123768 original size:10 final size:11
Alignment explanation
Indices: 107123735--107123772 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
107123725 AAATGATATC
*
107123735 AAAACAATGAA
1 AAAACAGTGAA
*
107123746 AAAATAGTGAA
1 AAAACAGTGAA
107123757 AAAACAGT-AA
1 AAAACAGTGAA
107123767 AAAACA
1 AAAACA
107123773 ACAACAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.71, C:0.08, G:0.11, T:0.11
Consensus pattern (11 bp):
AAAACAGTGAA
Found at i:107129204 original size:28 final size:29
Alignment explanation
Indices: 107129172--107129255 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 29
107129162 TTCTGGGATT
*
107129172 AAATTTTA-GGGTTTAATATAATTTTTAA
1 AAATTTTACGGGTTTAATAAAATTTTTAA
** **
107129200 AAATTTTACGATTTTAATGGAA-TTTTAA
1 AAATTTTACGGGTTTAATAAAATTTTTAA
*
107129228 AAA--TTAGGGGTTTAATTAAAATTTTTAA
1 AAATTTTACGGGTTTAA-TAAAATTTTTAA
107129256 TTTTTTTTTG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
26 9 0.20
27 3 0.07
28 23 0.52
29 9 0.20
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.46
Consensus pattern (29 bp):
AAATTTTACGGGTTTAATAAAATTTTTAA
Found at i:107129922 original size:48 final size:48
Alignment explanation
Indices: 107129853--107129993 Score: 221
Period size: 48 Copynumber: 2.9 Consensus size: 48
107129843 CTTCTGTTTT
* * * *
107129853 TATATATATTAGTTGT-AATGTTATATGTGTTGTACGTGATTTTATGTA
1 TATATAGATTAGTT-TCAATGTTACATGCGTCGTACGTGATTTTATGTA
107129901 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
1 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
*
107129949 TATATAGATTAGTTCCAATGTTACATGCGTCGTACGTGATTTTAT
1 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTAT
107129994 CTGTATTTTT
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 1 0.01
48 86 0.99
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.46
Consensus pattern (48 bp):
TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
Found at i:107130831 original size:37 final size:39
Alignment explanation
Indices: 107130789--107130870 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 39
107130779 ATTATTATCA
107130789 TATTTAAAAT-AAAATC-ATATATTTATATT-TTTTTAA-T
1 TATTTAAAATAAAAATCTA-AT-TTTATATTATTTTTAATT
* *
107130826 TATTT-AATTAAAAATCTAATTTTTTATTATTTTTAATT
1 TATTTAAAATAAAAATCTAATTTTATATTATTTTTAATT
107130864 TATTTAA
1 TATTTAA
107130871 TTATATTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
36 10 0.26
37 20 0.53
38 7 0.18
39 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (39 bp):
TATTTAAAATAAAAATCTAATTTTATATTATTTTTAATT
Found at i:107133377 original size:3 final size:3
Alignment explanation
Indices: 107133369--107133398 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
107133359 TGAGTGAGTT
107133369 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
107133399 ATTCAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:107135040 original size:19 final size:19
Alignment explanation
Indices: 107135016--107135053 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
107135006 ACCTAATATA
107135016 TATTTTTAGTTA-TATTTTT
1 TATTTTTA-TTATTATTTTT
107135035 TATTTTTATTATTATTTTT
1 TATTTTTATTATTATTTTT
107135054 CAAACATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TATTTTTATTATTATTTTT
Found at i:107136701 original size:26 final size:26
Alignment explanation
Indices: 107136672--107136779 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
107136662 TGGTACAAAT
* *
107136672 TGATAATGGGTTAGTTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
107136698 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107136724 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
107136750 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107136776 TGAT
1 TGAT
107136780 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107138366 original size:27 final size:26
Alignment explanation
Indices: 107138326--107138466 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
107138316 AGGAAGCGTC
*
107138326 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
107138353 CTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
107138380 CTGGTGGCTATGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
107138407 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
107138434 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
107138461 CTGGTG
1 CTGGTG
107138467 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 88 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:107138409 original size:54 final size:53
Alignment explanation
Indices: 107138326--107138466 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
107138316 AGGAAGCGTC
*
107138326 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTATGCCAC-ATTATCTAATCTGGTGGCTCTGCCACATATATCTGCT
*
107138380 CTGGTGGCTATGCCACGATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTAATCTGGTGGCTCTGCCACATATATCTGCT
* * *
107138434 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCT-AATCTGGTG
107138467 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTAATCTGGTGGCTCTGCCACATATATCTGCT
Found at i:107138477 original size:27 final size:26
Alignment explanation
Indices: 107138326--107138484 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
107138316 AGGAAGCGTC
* * *
107138326 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
107138353 CTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * **
107138380 CTGGTGGCTATGCCACGATTATCTAAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
*
107138407 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
107138434 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
107138461 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
107138485 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:107139646 original size:11 final size:11
Alignment explanation
Indices: 107139632--107139672 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
107139622 TATTTTCTCC
*
107139632 CTATTTTGCTA
1 CTATTTTACTA
107139643 CTATTTTACTA
1 CTATTTTACTA
* *
107139654 TTATCTTACTA
1 CTATTTTACTA
107139665 CTATTTTA
1 CTATTTTA
107139673 TTGTTATTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.56
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:107139743 original size:30 final size:30
Alignment explanation
Indices: 107139709--107139771 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
107139699 ACTTATTTTA
107139709 TTGTT-AATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTT-TTATTATTTTAAAGGCAT
107139739 TTGTTAAATTTTTTATTATTTTAAAGGCAT
1 TTGTTAAATTTTTTATTATTTTAAAGGCAT
107139769 TTG
1 TTG
107139772 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 26 0.81
31 6 0.19
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAAATTTTTTATTATTTTAAAGGCAT
Found at i:107150870 original size:21 final size:22
Alignment explanation
Indices: 107150841--107150886 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
107150831 TGTTACGTCA
*
107150841 TCACTTAAA-TTTTTAAAATTT
1 TCACATAAATTTTTTAAAATTT
107150862 TCACATAAATTTTTTAAAATTT
1 TCACATAAATTTTTTAAAATTT
107150884 TCA
1 TCA
107150887 AAAAATAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (22 bp):
TCACATAAATTTTTTAAAATTT
Found at i:107150892 original size:21 final size:22
Alignment explanation
Indices: 107150850--107150892 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
107150840 ATCACTTAAA
*
107150850 TTTTTAAAATTTTCACATAAAT
1 TTTTTAAAATTTTCACAAAAAT
107150872 TTTTTAAAATTTTCA-AAAAAT
1 TTTTTAAAATTTTCACAAAAAT
107150893 AACGTGACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTTTAAAATTTTCACAAAAAT
Found at i:107153476 original size:24 final size:24
Alignment explanation
Indices: 107153423--107153468 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
107153413 ATTTTTATAT
*
107153423 ATTTTTCTAAATATAAATTTTGGA
1 ATTTTTATAAATATAAATTTTGGA
*
107153447 ATTTTTATAAATATATATTTTG
1 ATTTTTATAAATATAAATTTTG
107153469 ATTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTTTTATAAATATAAATTTTGGA
Found at i:107153974 original size:31 final size:31
Alignment explanation
Indices: 107153930--107153989 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
107153920 ACATTTTCCA
*
107153930 AATTCAAAGATCAAAATGAGTATAATTGTCG
1 AATTCAAAGATCAAAATGAATATAATTGTCG
* * * *
107153961 AATTCGAATATCAAAGTGAATCTAATTGT
1 AATTCAAAGATCAAAATGAATATAATTGT
107153990 AAAATTCTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (31 bp):
AATTCAAAGATCAAAATGAATATAATTGTCG
Found at i:107153996 original size:31 final size:31
Alignment explanation
Indices: 107153929--107153996 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
107153919 TACATTTTCC
* *
107153929 AAATTCAAAGATCAAAATGAGTATAATTGTC
1 AAATTCAAAGATCAAAATGAATATAATTGTA
* * * * *
107153960 GAATTCGAATATCAAAGTGAATCTAATTGTA
1 AAATTCAAAGATCAAAATGAATATAATTGTA
107153991 AAATTC
1 AAATTC
107153997 TAGAACTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (31 bp):
AAATTCAAAGATCAAAATGAATATAATTGTA
Found at i:107171830 original size:30 final size:31
Alignment explanation
Indices: 107171766--107171837 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
107171756 AAAAAACATC
* *
107171766 TTAATGACTTGAATAAAAAATTTTAAATAAT
1 TTAATGACTTAAATAAAAAAATTTAAATAAT
*
107171797 TTAATGACTTAAATAAAAAAATTT-AATAGT
1 TTAATGACTTAAATAAAAAAATTTAAATAAT
107171827 TTAATGA-TTAA
1 TTAATGACTTAA
107171838 TTTATAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 4 0.11
30 12 0.32
31 22 0.58
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (31 bp):
TTAATGACTTAAATAAAAAAATTTAAATAAT
Found at i:107181203 original size:15 final size:15
Alignment explanation
Indices: 107181183--107181225 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
107181173 GAATAATCTT
107181183 ATTATATATGTTTTG
1 ATTATATATGTTTTG
* *
107181198 ATTATATATTTTTTT
1 ATTATATATGTTTTG
*
107181213 CTTATATAATGTT
1 ATTATAT-ATGTT
107181226 CAGAATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (15 bp):
ATTATATATGTTTTG
Found at i:107181968 original size:17 final size:16
Alignment explanation
Indices: 107181939--107181970 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
107181929 TTTTTATGTT
107181939 TTTATATATTATATAC
1 TTTATATATTATATAC
107181955 TTTATATCATTATATA
1 TTTATAT-ATTATATA
107181971 AACATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATATATTATATAC
Found at i:107188927 original size:31 final size:29
Alignment explanation
Indices: 107188859--107188947 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 29
107188849 ATCTTAAAAT
*
107188859 TATACATGAATTTTGATTTGGTGT-AATTA
1 TATACATGAATTTTAATTTGGT-TCAATTA
* *
107188888 TACACATGATATTTTAATTATGGTTCAATTG
1 TATACATGA-ATTTTAATT-TGGTTCAATTA
* *
107188919 TATACATGAAACTTTAATTTTGATTCAAT
1 TATACATG-AATTTTAA-TTTGGTTCAAT
107188948 CATGCATATT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
29 8 0.16
30 9 0.18
31 29 0.59
32 3 0.06
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (29 bp):
TATACATGAATTTTAATTTGGTTCAATTA
Found at i:107189135 original size:29 final size:30
Alignment explanation
Indices: 107189068--107189124 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
107189058 GAATTTGATC
*
107189068 AAATCAAAAGTTCATGTATAAAATTACACA
1 AAATCAAAAGTTCACGTATAAAATTACACA
107189098 AAATCAAAA-TTCACGTATAAAATTACA
1 AAATCAAAAGTTCACGTATAAAATTACA
107189125 ATTAGACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.26
Consensus pattern (30 bp):
AAATCAAAAGTTCACGTATAAAATTACACA
Found at i:107189908 original size:31 final size:32
Alignment explanation
Indices: 107189871--107189931 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
107189861 ACACAATAAC
*
107189871 TTAAATAAAAA--TTTCTGAATAGTTTAATGGT
1 TTAAATAAAAACTTTTC-GAATAGTTCAATGGT
107189902 TTAAATAAAAACTTTTCGAATAGTTCAATG
1 TTAAATAAAAACTTTTCGAATAGTTCAATG
107189932 ACTATTGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 11 0.41
32 12 0.44
33 4 0.15
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (32 bp):
TTAAATAAAAACTTTTCGAATAGTTCAATGGT
Found at i:107192615 original size:31 final size:31
Alignment explanation
Indices: 107192577--107192642 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
107192567 ACAACCCAAA
* *
107192577 GACTTAAAT-AAAGATTTTTGAATAGTTCAAC
1 GACTTAAATGAAA-ATTTTCGAATAATTCAAC
*
107192608 GACTTAAATGAAAATTTTCGAATAATTCAAT
1 GACTTAAATGAAAATTTTCGAATAATTCAAC
107192639 GACT
1 GACT
107192643 ATTTTGTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (31 bp):
GACTTAAATGAAAATTTTCGAATAATTCAAC
Found at i:107199664 original size:22 final size:20
Alignment explanation
Indices: 107199631--107199676 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
107199621 AAAATAGTTA
107199631 TTAATTATTCAAAATTTTTTAT
1 TTAATTATTC-AAA-TTTTTAT
107199653 TTAAGTTA-TCAAATTTTTAT
1 TTAA-TTATTCAAATTTTTAT
107199673 TTAA
1 TTAA
107199677 ATTACTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.48
21 3 0.13
22 6 0.26
23 3 0.13
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (20 bp):
TTAATTATTCAAATTTTTAT
Found at i:107200833 original size:144 final size:143
Alignment explanation
Indices: 107200559--107200833 Score: 315
Period size: 144 Copynumber: 1.9 Consensus size: 143
107200549 TGACTGAATA
*
107200559 AATTTAACTATTACCGTTTGGGTTAAGACTTAAACTCCAGAATTCAAAAAATACACAAACTAAAA
1 AATTTAACTATTACCGTTTGGGTCAAGACTTAAACTCCAGAATTCAAAAAATACACAAACTAAAA
* * * * * * *
107200624 TAAATCAAATTAGAATACAATGATTAAATTCACAACCTACATATAGTATATAGTCTAATAACAAA
66 TAAACCAAATTAGAATACAATGACTAAAATAACAACCTACACATAGTATAGAGACTAATAACAAA
107200689 ATTTAACCAGCCG
131 ATTTAACCAGCCG
* * * * * *
107200702 AATTTAATTATTGCCGTTTGGGTCAAGACTTAAACTTCA-ATATTTAAAAAATTACATAGACTAA
1 AATTTAACTATTACCGTTTGGGTCAAGACTTAAACTCCAGA-ATTCAAAAAA-TACACAAACTAA
** * *
107200766 AATTGACCAAATTAGAGCATA-AA-GACTAAAATAACAACCTAGC-CATAGTATAGGGACTACTA
64 AATAAACCAAATTAGA--ATACAATGACTAAAATAACAACCTA-CACATAGTATAGAGACTAATA
107200828 ACAAAA
126 ACAAAA
107200834 AATATTAGAG
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
142 1 0.01
143 44 0.40
144 58 0.53
145 3 0.03
146 3 0.03
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.28
Consensus pattern (143 bp):
AATTTAACTATTACCGTTTGGGTCAAGACTTAAACTCCAGAATTCAAAAAATACACAAACTAAAA
TAAACCAAATTAGAATACAATGACTAAAATAACAACCTACACATAGTATAGAGACTAATAACAAA
ATTTAACCAGCCG
Found at i:107203054 original size:13 final size:13
Alignment explanation
Indices: 107203036--107203063 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
107203026 TTGTCGCCTC
107203036 GATAATGATGTTT
1 GATAATGATGTTT
107203049 GATAATGATGTTT
1 GATAATGATGTTT
107203062 GA
1 GA
107203064 ATTGGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (13 bp):
GATAATGATGTTT
Found at i:107204036 original size:31 final size:31
Alignment explanation
Indices: 107203976--107204049 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
107203966 GAAAACCCTA
107203976 AAGTTCAGGCC-CAATATAGAAACAATTGCC
1 AAGTTCAGGCCTCAATATAGAAACAATTGCC
* * **
107204006 AAGTTCAGGCCTCAATGTGGAAACTGTTGCC
1 AAGTTCAGGCCTCAATATAGAAACAATTGCC
107204037 AAGTTCAAGGCCT
1 AAGTTC-AGGCCT
107204050 AGCTTGGACA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 11 0.29
31 21 0.55
32 6 0.16
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (31 bp):
AAGTTCAGGCCTCAATATAGAAACAATTGCC
Found at i:107204605 original size:30 final size:29
Alignment explanation
Indices: 107204569--107204632 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
107204559 GTCATTGTAC
*
107204569 CTTTTATAAATTTGGAATTTAGT-CTCTATA
1 CTTTTATAAATAT-GAATTTAGTCCT-TATA
**
107204599 CTTTTATTTATATGAATTTAGTCCTTATA
1 CTTTTATAAATATGAATTTAGTCCTTATA
107204628 CTTTT
1 CTTTT
107204633 TGTTAGAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.55
Consensus pattern (29 bp):
CTTTTATAAATATGAATTTAGTCCTTATA
Found at i:107204971 original size:14 final size:15
Alignment explanation
Indices: 107204947--107204976 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
107204937 TTGTGTGTTC
107204947 TTTATTTTTATTTTT
1 TTTATTTTTATTTTT
107204962 TTTA-TTTTATTTTT
1 TTTATTTTTATTTTT
107204976 T
1 T
107204977 CACAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTATTTTTATTTTT
Found at i:107221694 original size:15 final size:15
Alignment explanation
Indices: 107221674--107221711 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
107221664 CTAACAAAGG
107221674 AACCCAATACCCACA
1 AACCCAATACCCACA
107221689 AACCCAATACCCACA
1 AACCCAATACCCACA
107221704 AACCCAAT
1 AACCCAAT
107221712 TACCATGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.47, C:0.45, G:0.00, T:0.08
Consensus pattern (15 bp):
AACCCAATACCCACA
Found at i:107222952 original size:18 final size:18
Alignment explanation
Indices: 107222931--107222979 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
107222921 TTATTATAAC
107222931 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
107222949 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
107222967 TA-TTATATATATC
1 TATTTATATATATC
107222980 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:107222952 original size:35 final size:35
Alignment explanation
Indices: 107222913--107222979 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
107222903 TGTCCTATTA
107222913 TTATTATAT-TATTATAAC-TATTTATATATATCATC
1 TTATTATATAT-TTATAACTTA-TTATATATATCATC
*
107222948 TTATTATATATTTATATCTTATTATATATATC
1 TTATTATATATTTATAACTTATTATATATATC
107222980 TATATATCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
35 26 0.90
36 3 0.10
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTATATATTTATAACTTATTATATATATCATC
Found at i:107235459 original size:44 final size:46
Alignment explanation
Indices: 107235345--107235459 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
107235335 ATACAGGTCT
* * *
107235345 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATGTCAGATCC
* *
107235391 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAAT-GTCAGATCC
* *
107235435 TATCTCCTTGAGATTACAATGGAGC
1 TATCTCCCTGAGATTACAGTGGAGC
107235460 GGATTAAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 25 0.42
45 3 0.05
46 32 0.53
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATGTCAGATCC
Found at i:107235614 original size:44 final size:43
Alignment explanation
Indices: 107235556--107235850 Score: 190
Period size: 44 Copynumber: 6.8 Consensus size: 43
107235546 GGAGAATTTC
* *
107235556 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGCCA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGACA
* * **
107235599 GAGATCTTATCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACA
1 -AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAGACA
** * * *
107235643 CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAA-ATAA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGA-CA
* * ** * *** *
107235686 AGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCA-TCA
1 A-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGACA
*
107235729 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAGAAGA-A
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTA-AAGACA
* * * * * *
107235770 ACCAATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAA-ATCA
1 A--GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGA-CA
* * *
107235815 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 -AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT
107235851 CGCATCAAGT
Statistics
Matches: 191, Mismatches: 47, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
41 28 0.15
42 2 0.01
43 33 0.17
44 124 0.65
45 3 0.02
46 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGACA
Found at i:107235665 original size:87 final size:85
Alignment explanation
Indices: 107235562--107235762 Score: 244
Period size: 87 Copynumber: 2.3 Consensus size: 85
107235552 TTTCAGATCT
* * *
107235562 TATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
107235626 GGAGTAGATCGAAGACACTA-TCC
65 AGAGTAGATCGAA-ACA--AGTCC
* * * *
107235649 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
* * *
107235714 GAGTAGATCGCATCAAGTCT
66 GAGTAGATCGAAACAAGTCC
*
107235734 TATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TATCTCCCTGAAGTTACAGTGGAGCAGAT
107235763 AGAAGAAACC
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
84 1 0.01
85 29 0.29
86 2 0.02
87 65 0.66
88 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (85 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGTAGATCGAAACAAGTCC
Found at i:107235803 original size:129 final size:128
Alignment explanation
Indices: 107235603--107235876 Score: 372
Period size: 129 Copynumber: 2.1 Consensus size: 128
107235593 AAGCCAGAGA
* * * *
107235603 TCTTATCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAG-TTACAGCGGAGCAGATAGAAGAAACAATCCTATCTCCCTGAAGTTACA
* * *
107235667 GTGGAGCGGATTAAAAT-AAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATCAAG
65 GTAGAGCGGATTAAAATCAAA-GATCTTATCTCTCTGAAGTTACAGCAGAGCAGATCGCATCAAG
* * * *
107235731 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAATCCTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGAAGAAA-CAATCCTATCTCCCTGAAGTTACA
* * *
107235796 GTAGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAG
65 GTAGAGCGGATTAAAATCAAAGATCTTATCTCTCTGAAGTTACAGCAGAGCAGATCGCATCAAG
*
107235860 TCTTATTTCCCTGAAGT
1 TCTTATCTCCCTGAAGT
107235877 ACAATGGATT
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
128 32 0.25
129 94 0.73
130 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGAAGAAACAATCCTATCTCCCTGAAGTTACAG
TAGAGCGGATTAAAATCAAAGATCTTATCTCTCTGAAGTTACAGCAGAGCAGATCGCATCAAG
Found at i:107235864 original size:41 final size:41
Alignment explanation
Indices: 107235649--107235876 Score: 161
Period size: 44 Copynumber: 5.3 Consensus size: 41
107235639 GACACTATCC
* * * * * *
107235649 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TAGAATCAA-G-TCT
* * * * * *
107235693 TATCTCTCTGAGGTTACAGCAGAGTAGATCGCATCAAGTCT
1 TATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCAAGTCT
* * * *
107235734 TATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAA-TCC
1 TATCTCTCTGAAGTTGCAGTAGAGCAGAT---AG-AATCAAGTCT
* *
107235778 TATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TAGAATCA-AG-TCT
* *
107235822 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCT
1 TATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCAAGTCT
* *
107235863 TATTTCCCTGAAGT
1 TATCTCTCTGAAGT
107235877 ACAATGGATT
Statistics
Matches: 144, Mismatches: 32, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
41 45 0.31
42 5 0.03
43 10 0.07
44 79 0.55
45 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (41 bp):
TATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCAAGTCT
Found at i:107236090 original size:15 final size:15
Alignment explanation
Indices: 107236070--107236107 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
107236060 CTAACAAAGG
107236070 AACCCAATACCCACA
1 AACCCAATACCCACA
107236085 AACCCAATACCCACA
1 AACCCAATACCCACA
107236100 AACCCAAT
1 AACCCAAT
107236108 TACCATGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.47, C:0.45, G:0.00, T:0.08
Consensus pattern (15 bp):
AACCCAATACCCACA
Found at i:107237344 original size:18 final size:18
Alignment explanation
Indices: 107237323--107237371 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
107237313 TTATTATAAC
107237323 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
107237341 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
107237359 TA-TTATATATATC
1 TATTTATATATATC
107237372 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:107237344 original size:33 final size:35
Alignment explanation
Indices: 107237307--107237371 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
107237297 ATTATTATTA
107237307 TTATTAT-TA-TTATAAC-TATTTATATATATCATC
1 TTATTATATATTTATAACTTA-TTATATATATCATC
*
107237340 TTATTATATATTTATATCTTATTATATATATC
1 TTATTATATATTTATAACTTATTATATATATC
107237372 TATATATCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 2 0.07
35 17 0.61
36 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTATATATTTATAACTTATTATATATATCATC
Found at i:107247665 original size:16 final size:17
Alignment explanation
Indices: 107247641--107247673 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
107247631 ATTAATTTTT
107247641 TTATAT-AAAGTTAATA
1 TTATATAAAAGTTAATA
*
107247657 TTATTTAAAAGTTAATA
1 TTATATAAAAGTTAATA
107247674 AAAATATACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (17 bp):
TTATATAAAAGTTAATA
Found at i:107248321 original size:17 final size:17
Alignment explanation
Indices: 107248286--107248355 Score: 63
Period size: 17 Copynumber: 4.0 Consensus size: 17
107248276 ATTATTGAAA
*
107248286 ATATTCAATATTAATATAT
1 ATATT-AATAATAA-ATAT
*
107248305 ATAGTAATAATAAATAT
1 ATATTAATAATAAATAT
*
107248322 TTATTACA-AATATAA-AT
1 ATATTA-ATAATA-AATAT
107248339 ATATTAATAATAAATAT
1 ATATTAATAATAAATAT
107248356 TTTTTAGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
16 3 0.07
17 25 0.60
18 10 0.24
19 4 0.10
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
ATATTAATAATAAATAT
Found at i:107248353 original size:15 final size:15
Alignment explanation
Indices: 107248297--107248355 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
107248287 TATTCAATAT
* *
107248297 TAATATATATAGTAA
1 TAATAAATATATTAA
107248312 TAATAAATATTTATTACA
1 TAATAAATA--TATTA-A
*
107248330 AATATAAATATATTAA
1 TA-ATAAATATATTAA
107248346 TAATAAATAT
1 TAATAAATAT
107248356 TTTTTAGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
15 16 0.44
16 2 0.06
17 9 0.25
18 2 0.06
19 7 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (15 bp):
TAATAAATATATTAA
Found at i:107248827 original size:23 final size:23
Alignment explanation
Indices: 107248801--107248847 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
107248791 TTTATGAAAG
107248801 TAAGCCATTTTCTAAAAATAATT
1 TAAGCCATTTTCTAAAAATAATT
107248824 TAAGCCATTTTCTAAAAATAATT
1 TAAGCCATTTTCTAAAAATAATT
107248847 T
1 T
107248848 TCCGGAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (23 bp):
TAAGCCATTTTCTAAAAATAATT
Found at i:107249382 original size:19 final size:19
Alignment explanation
Indices: 107249360--107249399 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
107249350 TTTATTTTAA
*
107249360 AATTAAAAAAACTATTAGT
1 AATTAAAAAAAATATTAGT
107249379 AATTAAAAAAAATATTAGT
1 AATTAAAAAAAATATTAGT
107249398 AA
1 AA
107249400 AGAGGGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (19 bp):
AATTAAAAAAAATATTAGT
Found at i:107255936 original size:20 final size:20
Alignment explanation
Indices: 107255900--107255937 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
107255890 ATTTAAAATT
*
107255900 AAAAGTCTAAAATAATATTC
1 AAAAGTCTAAAAAAATATTC
107255920 AAAAGT-TAATAAAAATAT
1 AAAAGTCTAA-AAAAATAT
107255938 ACACTCATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAGTCTAAAAAAATATTC
Found at i:107261732 original size:31 final size:31
Alignment explanation
Indices: 107261697--107261758 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
107261687 AGATACCTTT
*
107261697 TAGGTAATGACGGAATAAAAGAAAATCATTG
1 TAGGTAATGACGAAATAAAAGAAAATCATTG
*
107261728 TAGGTAATGATGAAATAAAAGAAAATCATTG
1 TAGGTAATGACGAAATAAAAGAAAATCATTG
107261759 GTACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (31 bp):
TAGGTAATGACGAAATAAAAGAAAATCATTG
Found at i:107265604 original size:17 final size:17
Alignment explanation
Indices: 107265584--107265619 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
107265574 AATTTTGAGA
107265584 ATATTAAAAAAAATGCG
1 ATATTAAAAAAAATGCG
107265601 ATATTAAAAAAAATGCG
1 ATATTAAAAAAAATGCG
107265618 AT
1 AT
107265620 TTTCTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.58, C:0.06, G:0.11, T:0.25
Consensus pattern (17 bp):
ATATTAAAAAAAATGCG
Found at i:107266512 original size:34 final size:33
Alignment explanation
Indices: 107266474--107266559 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 33
107266464 GGTAATAAGG
*
107266474 AAATATAGTAAAATATAATATAATTTACAAATAA
1 AAATATAGTAAAATATAA-ATAATATACAAATAA
**
107266508 AAATAT-GTAATAATATAAATAATATAGTAATAA
1 AAATATAGTAA-AATATAAATAATATACAAATAA
* *
107266541 AATATATAATATAATATAA
1 AA-ATATAGTAAAATATAA
107266560 GAAGAATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 18 0.41
34 24 0.55
35 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (33 bp):
AAATATAGTAAAATATAAATAATATACAAATAA
Found at i:107266539 original size:20 final size:20
Alignment explanation
Indices: 107266502--107266553 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
107266492 TATAATTTAC
107266502 AAATAAA-AATAT-GTAATA
1 AAATAAATAATATAGTAATA
*
107266520 ATATAAATAATATAGTAATA
1 AAATAAATAATATAGTAATA
*
107266540 AAATATATAATATA
1 AAATAAATAATATA
107266554 ATATAAGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 6 0.21
19 5 0.17
20 18 0.62
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATAAATAATATAGTAATA
Found at i:107266570 original size:25 final size:25
Alignment explanation
Indices: 107266516--107266582 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
107266506 AAAAATATGT
*
107266516 AATA-ATATAA-ATAATATAGTAAT
1 AATATATATAATATAATATAGTAAG
*
107266539 AAAATATATAATATAATATAAG-AAG
1 AATATATATAATATAATAT-AGTAAG
*
107266564 AATATATAAAATAATAATA
1 AATATATATAAT-ATAATA
107266583 ATCTAATAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 3 0.08
24 6 0.17
25 19 0.53
26 8 0.22
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (25 bp):
AATATATATAATATAATATAGTAAG
Found at i:107266732 original size:44 final size:44
Alignment explanation
Indices: 107266663--107266805 Score: 120
Period size: 46 Copynumber: 3.2 Consensus size: 44
107266653 AACTTTATAA
*
107266663 ATAAAATATATA--AT-AAAAT-GAATAATATAATATATAATAT
1 ATAAAATATATATGATAAAAATCAAATAATATAATATATAATAT
*
107266703 ATAAAATA-ATATGTACTAAAAA-CATATAATATAGATATAAATAATAT
1 ATAAAATATATATG-A-TAAAAATCAAATAATATA-ATAT--ATAATAT
* * *
107266750 ATATAAA-ATATATGATAAAAATTAAAAATATATAATAATATAATAG
1 ATA-AAATATATATGATAAAAATCAAATA-ATATAAT-ATATAATAT
107266796 ATAAAATATA
1 ATAAAATATA
107266806 GTAAAATAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 24
0.73 0.05 0.21
Matches are distributed among these distances:
39 3 0.04
40 8 0.10
42 1 0.01
43 1 0.01
44 12 0.15
45 7 0.09
46 18 0.22
47 17 0.21
48 15 0.18
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (44 bp):
ATAAAATATATATGATAAAAATCAAATAATATAATATATAATAT
Found at i:107266735 original size:32 final size:33
Alignment explanation
Indices: 107266694--107266757 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 33
107266684 ATAATATAAT
*
107266694 ATATAATAT-ATA-AAATAATATGTACTAAAAAC
1 ATATAATATAATATAAATAATATATA-TAAAAAC
107266726 ATATAATATAGATATAAATAATATATATAAAA
1 ATATAATATA-ATATAAATAATATATATAAAA
107266758 TATATGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 9 0.32
34 8 0.29
35 11 0.39
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (33 bp):
ATATAATATAATATAAATAATATATATAAAAAC
Found at i:107266803 original size:17 final size:16
Alignment explanation
Indices: 107266683--107266842 Score: 76
Period size: 15 Copynumber: 10.1 Consensus size: 16
107266673 TAATAAAATG
*
107266683 AATAATATAAT-ATAT
1 AATAATAAAATAATAT
107266698 AATATATAAAATAATAT
1 AATA-ATAAAATAATAT
* *
107266715 -GTACTAAAA-ACATAT
1 AATAATAAAATA-ATAT
107266730 AATATAGATATAAATAATAT
1 -A-ATA-ATA-AAATAATAT
107266750 -AT-ATAAAAT-ATAT
1 AATAATAAAATAATAT
* *
107266763 GATAA-AAATTAA-A-
1 AATAATAAAATAATAT
*
107266776 AAT-ATATAATAATAT
1 AATAATAAAATAATAT
107266791 AATAGATAAAAT-ATAGT
1 AATA-ATAAAATAATA-T
107266808 AA-AAT-AAATAATAT
1 AATAATAAAATAATAT
107266822 ATATAATGAAAATACATAT
1 A-ATAAT-AAAATA-ATAT
107266841 AA
1 AA
107266843 CATATTGTAA
Statistics
Matches: 111, Mismatches: 10, Indels: 45
0.67 0.06 0.27
Matches are distributed among these distances:
12 1 0.01
13 11 0.10
14 19 0.17
15 27 0.24
16 15 0.14
17 15 0.14
18 8 0.07
19 7 0.06
20 7 0.06
21 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
AATAATAAAATAATAT
Found at i:107266853 original size:43 final size:40
Alignment explanation
Indices: 107266742--107266877 Score: 105
Period size: 41 Copynumber: 3.2 Consensus size: 40
107266732 TATAGATATA
* *
107266742 AATAATATATATAAAATATATGATAAAAATTAAAAATATATAAT
1 AATAAAATACATAAAATATA-G-T-AAAA-TAAAAATATATAAT
* *
107266786 AATATAATAGATAAAATATAGTAAAATAAATAATATAT-AT
1 AATAAAATACATAAAATATAGTAAAATAAA-AATATATAAT
* ** *
107266826 AATGAAAATACATATAACATATTGTAAAATGCAAATATA-ACAA
1 AAT-AAAATACATA-AA-ATATAGTAAAATAAAAATATATA-AT
107266869 AATAAAATA
1 AATAAAATA
107266878 TATATAAAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
40 9 0.12
41 19 0.25
42 15 0.19
43 17 0.22
44 17 0.22
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.30
Consensus pattern (40 bp):
AATAAAATACATAAAATATAGTAAAATAAAAATATATAAT
Found at i:107266854 original size:85 final size:91
Alignment explanation
Indices: 107266663--107266854 Score: 199
Period size: 87 Copynumber: 2.2 Consensus size: 91
107266653 AACTTTATAA
* * * *
107266663 ATAAAATATATAAT-AAAA-TGAATA-ATATAATATATAATATATAAAATAATATGTACTAAAAA
1 ATAAAATATATGATAAAAATTAAAAATATATAATATATAATAGATAAAATAATATGTAC-AAAAA
*
107266725 CATATAATATAGATATAAATAATATAT
65 CATATAATATAGATATAAATAATACAT
*
107266752 ATAAAATATATGATAAAAATTAAAAATATATAATAATATAATAGATAAAAT-ATA-GTA-AAATA
1 ATAAAATATATGATAAAAATTAAAAATATATAAT-ATATAATAGATAAAATAATATGTACAAAAA
* *
107266814 -A-ATAATATATATAATGAA-AATACAT
65 CATATAATATAGAT-ATAAATAATACAT
*
107266839 ATAACATAT-TG-TAAAA
1 ATAAAATATATGATAAAA
107266855 TGCAAATATA
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
85 5 0.06
86 2 0.02
87 24 0.27
88 5 0.06
89 17 0.19
90 4 0.04
91 7 0.08
92 10 0.11
93 15 0.17
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.32
Consensus pattern (91 bp):
ATAAAATATATGATAAAAATTAAAAATATATAATATATAATAGATAAAATAATATGTACAAAAAC
ATATAATATAGATATAAATAATACAT
Found at i:107266891 original size:14 final size:15
Alignment explanation
Indices: 107266872--107266905 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
107266862 ATAACAAAAT
107266872 AAAATATAT-ATAAA
1 AAAATATATGATAAA
107266886 AAAATATATGATAAA
1 AAAATATATGATAAA
*
107266901 CAAAT
1 AAAAT
107266906 CCTTTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAATATATGATAAA
Found at i:107269094 original size:117 final size:117
Alignment explanation
Indices: 107268888--107269123 Score: 427
Period size: 117 Copynumber: 2.0 Consensus size: 117
107268878 AGCCTAATAT
**
107268888 TTACACCTATAATATATTGTTGGATGCATTTTATAGGAGGATATGATTTCCAAAGCTGAAGTTGT
1 TTACACCTATAATATATTGTTGGATGCATTTTATAAAAGGATATGATTTCCAAAGCTGAAGTTGT
* *
107268953 TATTGGAGGGGATACTAAGCTCAGTCGATAACAACTTCATCACGGCTACATA
66 TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCACGGCTACATA
107269005 TTACACCTATAATATATTGTTGGATGCATTTTATAAAAGGATATGATTTCCAAAGCTGAAGTTGT
1 TTACACCTATAATATATTGTTGGATGCATTTTATAAAAGGATATGATTTCCAAAGCTGAAGTTGT
*
107269070 TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACATA
66 TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCACGGCTACATA
107269122 TT
1 TT
107269124 TGACATAATA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (117 bp):
TTACACCTATAATATATTGTTGGATGCATTTTATAAAAGGATATGATTTCCAAAGCTGAAGTTGT
TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCACGGCTACATA
Done.