Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 4 of 332
Found at i:1126502 original size:17 final size:16
Alignment explanation
Indices: 1126473--1126512 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
1126463 CAATTTATCA
1126473 AATAAAA-ATTATATT
1 AATAAAATATTATATT
1126488 AATTAAAATATTATATT
1 AA-TAAAATATTATATT
1126505 AATAAAAT
1 AATAAAAT
1126513 GCTTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.48
17 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAAAATATTATATT
Found at i:1126886 original size:97 final size:97
Alignment explanation
Indices: 1126720--1126915 Score: 383
Period size: 97 Copynumber: 2.0 Consensus size: 97
1126710 TGCAATACAC
1126720 ATATTTCATATGCTTTTATTAATTAATTAAATTAATAAATTAATTATTAAAATTGATCATGATAA
1 ATATTTCATATGCTTTTATTAATTAATTAAATTAATAAATTAATTATTAAAATTGATCATGATAA
1126785 ACAACTATCTTTATCACATCGAGAAGAAAAGA
66 ACAACTATCTTTATCACATCGAGAAGAAAAGA
1126817 ATATTTCATATGCTTTTATTAATTAATTAAATTAATAAATTAATTATTAAAATTGATCATGATAA
1 ATATTTCATATGCTTTTATTAATTAATTAAATTAATAAATTAATTATTAAAATTGATCATGATAA
*
1126882 ACAACTATCTTTATCACATTGAGAAGAAAAGA
66 ACAACTATCTTTATCACATCGAGAAGAAAAGA
1126914 AT
1 AT
1126916 TATAGTAGAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (97 bp):
ATATTTCATATGCTTTTATTAATTAATTAAATTAATAAATTAATTATTAAAATTGATCATGATAA
ACAACTATCTTTATCACATCGAGAAGAAAAGA
Found at i:1127040 original size:14 final size:16
Alignment explanation
Indices: 1127007--1127049 Score: 63
Period size: 14 Copynumber: 2.8 Consensus size: 16
1126997 GAGACTAACT
1127007 TTTTTAAATATATATA
1 TTTTTAAATATATATA
1127023 TTTTTAAATA-AT-TA
1 TTTTTAAATATATATA
*
1127037 TTTTTAAAAATAT
1 TTTTTAAATATAT
1127050 TGCTACTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 11 0.44
15 4 0.16
16 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTTAAATATATATA
Found at i:1131793 original size:26 final size:26
Alignment explanation
Indices: 1131764--1131845 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
1131754 TGGTACAAAT
1131764 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
1131790 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
1131816 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
1131842 TGAT
1 TGAT
1131846 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:1136424 original size:27 final size:27
Alignment explanation
Indices: 1136393--1136477 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
1136383 ATAAGGATTA
1136393 ATTTTAGTTATTTTAATATGTAAATGT
1 ATTTTAGTTATTTTAATATGTAAATGT
* * *
1136420 ATTTTATGTTCA--TAAATAAG--GAT-T
1 ATTTTA-GTT-ATTTTAATATGTAAATGT
1136444 AATTTTAGTTATTTTAATATGTAAATGT
1 -ATTTTAGTTATTTTAATATGTAAATGT
1136472 ATTTTA
1 ATTTTA
1136478 TGTAGTATCT
Statistics
Matches: 44, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
23 1 0.02
24 4 0.09
25 14 0.32
27 20 0.45
28 4 0.09
29 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.11, T:0.53
Consensus pattern (27 bp):
ATTTTAGTTATTTTAATATGTAAATGT
Found at i:1136441 original size:52 final size:52
Alignment explanation
Indices: 1136376--1136480 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
1136366 TTACTTCATT
1136376 TTCATAAATAAGGATTAATTTTAGTTATTTTAATATGTAAATGTATTTTATG
1 TTCATAAATAAGGATTAATTTTAGTTATTTTAATATGTAAATGTATTTTATG
1136428 TTCATAAATAAGGATTAATTTTAGTTATTTTAATATGTAAATGTATTTTATG
1 TTCATAAATAAGGATTAATTTTAGTTATTTTAATATGTAAATGTATTTTATG
1136480 T
1 T
1136481 AGTATCTTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.50
Consensus pattern (52 bp):
TTCATAAATAAGGATTAATTTTAGTTATTTTAATATGTAAATGTATTTTATG
Found at i:1136462 original size:25 final size:25
Alignment explanation
Indices: 1136382--1136462 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
1136372 CATTTTCATA
1136382 AATAAGGATTAATTTTAGTTATTTT
1 AATAAGGATTAATTTTAGTTATTTT
* * *
1136407 AATATGTAAATGT-ATTTTATGTTCA--TA
1 AATAAG--GAT-TAATTTTA-GTT-ATTTT
1136434 AATAAGGATTAATTTTAGTTATTTT
1 AATAAGGATTAATTTTAGTTATTTT
1136459 AATA
1 AATA
1136463 TGTAAATGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
23 1 0.02
24 4 0.10
25 18 0.43
27 14 0.33
28 4 0.10
29 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.11, T:0.49
Consensus pattern (25 bp):
AATAAGGATTAATTTTAGTTATTTT
Found at i:1145005 original size:14 final size:14
Alignment explanation
Indices: 1144986--1145015 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
1144976 TCCGAGCTGA
1144986 TTTCAATGGCTGTC
1 TTTCAATGGCTGTC
1145000 TTTCAATGGCTGTC
1 TTTCAATGGCTGTC
1145014 TT
1 TT
1145016 GAAGTAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (14 bp):
TTTCAATGGCTGTC
Found at i:1145958 original size:2 final size:2
Alignment explanation
Indices: 1145953--1145991 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
1145943 ATATATATAT
* * *
1145953 AG AG AG AG AG AG AG GG AG AG AA AG AG AG AG AG AA AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1145992 CATAATAACT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1145973 original size:12 final size:12
Alignment explanation
Indices: 1145953--1145991 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
1145943 ATATATATAT
*
1145953 AGAGAGAGAGAG
1 AGAGAGAGAAAG
*
1145965 AGGGAGAGAAAG
1 AGAGAGAGAAAG
1145977 AGAGAGAGAAAG
1 AGAGAGAGAAAG
1145989 AGA
1 AGA
1145992 CATAATAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (12 bp):
AGAGAGAGAAAG
Found at i:1150967 original size:50 final size:50
Alignment explanation
Indices: 1150907--1151009 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
1150897 AAAAAGAAAC
*
1150907 AAATATTATTATAAATGTGTTCTTGTCTTTTATATTTAAAATCTATTAAA
1 AAATATTATTATAAAGGTGTTCTTGTCTTTTATATTTAAAATCTATTAAA
1150957 AAATATTATTATAAAGGTGTTCTTGTCTTTTATATTTAAAATCTATTAAA
1 AAATATTATTATAAAGGTGTTCTTGTCTTTTATATTTAAAATCTATTAAA
1151007 AAA
1 AAA
1151010 ACAATTTAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.48
Consensus pattern (50 bp):
AAATATTATTATAAAGGTGTTCTTGTCTTTTATATTTAAAATCTATTAAA
Found at i:1153192 original size:12 final size:13
Alignment explanation
Indices: 1153169--1153215 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
1153159 GTAAGGTAAT
1153169 TATTTCTGTAAAAA
1 TATTTCT-TAAAAA
1153183 TATTT-TTAAAGAA
1 TATTTCTTAAA-AA
1153196 TTATTTCTT-AAAA
1 -TATTTCTTAAAAA
1153209 TATTTCT
1 TATTTCT
1153216 ATATATCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 11 0.37
13 5 0.17
14 12 0.40
15 2 0.07
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.51
Consensus pattern (13 bp):
TATTTCTTAAAAA
Found at i:1153200 original size:14 final size:14
Alignment explanation
Indices: 1153166--1153208 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
1153156 TTTGTAAGGT
1153166 AATTATTTCTGTAAA
1 AATTATTTCT-TAAA
1153181 AA-TATTT-TTAAA
1 AATTATTTCTTAAA
1153193 GAATTATTTCTTAAA
1 -AATTATTTCTTAAA
1153208 A
1 A
1153209 TATTTCTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 4 0.16
13 3 0.12
14 11 0.44
15 7 0.28
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (14 bp):
AATTATTTCTTAAA
Found at i:1155160 original size:15 final size:15
Alignment explanation
Indices: 1155136--1155172 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 15
1155126 ACTATAATTT
1155136 ATATTATATTAATTAAA
1 ATATTAT-TTAA-TAAA
1155153 ATATTATTTAATAAA
1 ATATTATTTAATAAA
1155168 ATATT
1 ATATT
1155173 TAATTTCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTATTTAATAAA
Found at i:1157551 original size:35 final size:35
Alignment explanation
Indices: 1157512--1157580 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
1157502 ACTTGCCTCT
1157512 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
* *
1157547 TCCCACTCTCCTATGCTGTCTGCCACTAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1157581 TCACAGACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.17, C:0.48, G:0.12, T:0.23
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:1157933 original size:9 final size:10
Alignment explanation
Indices: 1157901--1157939 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
1157891 ATTAAAACAT
1157901 ATAAAAATATA
1 ATAAAAA-ATA
*
1157912 ACAAAAAATA
1 ATAAAAAATA
1157922 ATAAAAAA-A
1 ATAAAAAATA
1157931 ATAAAAAAT
1 ATAAAAAAT
1157940 TTTACCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 9 0.36
10 10 0.40
11 6 0.24
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (10 bp):
ATAAAAAATA
Found at i:1158063 original size:11 final size:11
Alignment explanation
Indices: 1158047--1158086 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
1158037 CCCCCCTCCC
1158047 TTCTCTCTTCT
1 TTCTCTCTTCT
1158058 TTCTCTCTT-T
1 TTCTCTCTTCT
*
1158068 TT-T-TTTTCT
1 TTCTCTCTTCT
1158077 TTCTCTCTTC
1 TTCTCTCTTC
1158087 AAAATGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
8 3 0.12
9 4 0.17
10 4 0.17
11 13 0.54
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
TTCTCTCTTCT
Found at i:1158893 original size:19 final size:19
Alignment explanation
Indices: 1158869--1158905 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1158859 CTATTTTATA
*
1158869 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
1158888 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
1158906 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:1158982 original size:24 final size:22
Alignment explanation
Indices: 1158954--1159015 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 22
1158944 GAATAGTTTT
1158954 TATATTAT-TATCATTTCTAATATA
1 TATATTATATAT-ATTT-T-ATATA
1158978 TATATTATATATATTTTATATA
1 TATATTATATATATTTTATATA
*
1159000 T-TA-TGTATATATTTTA
1 TATATTATATATATTTTA
1159016 ATGTTATTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 12 0.33
21 2 0.06
22 6 0.17
23 1 0.03
24 12 0.33
25 3 0.08
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (22 bp):
TATATTATATATATTTTATATA
Found at i:1158988 original size:9 final size:9
Alignment explanation
Indices: 1158974--1159009 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
1158964 TCATTTCTAA
1158974 TATATATAT
1 TATATATAT
1158983 TATATATAT
1 TATATATAT
*
1158992 TTTATATAT
1 TATATATAT
*
1159001 TATGTATAT
1 TATATATAT
1159010 ATTTTAATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TATATATAT
Found at i:1158989 original size:11 final size:11
Alignment explanation
Indices: 1158973--1159011 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
1158963 ATCATTTCTA
1158973 ATATATATATT
1 ATATATATATT
*
1158984 ATATATATTTT
1 ATATATATATT
1158995 ATATAT-TATGT
1 ATATATATAT-T
1159006 ATATAT
1 ATATAT
1159012 TTTAATGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 2 0.08
11 23 0.92
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (11 bp):
ATATATATATT
Found at i:1159012 original size:11 final size:10
Alignment explanation
Indices: 1158976--1159024 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 10
1158966 ATTTCTAATA
1158976 TATATATTA-
1 TATATATTAT
1158985 TATATATT-T
1 TATATATTAT
1158994 TATATATTAT
1 TATATATTAT
1159004 GTATATATT-T
1 -TATATATTAT
*
1159014 TA-ATGTTAT
1 TATATATTAT
1159023 TA
1 TA
1159025 GTTACATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 4 0.11
9 21 0.60
10 2 0.06
11 8 0.23
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (10 bp):
TATATATTAT
Found at i:1159300 original size:37 final size:35
Alignment explanation
Indices: 1159235--1159304 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
1159225 TTATATATAG
1159235 TATTATTTTCATACATTATCATATTTATTATTATGCC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATGCC
1159272 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
1159305 TTTAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.01, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATGCC
Found at i:1163901 original size:17 final size:17
Alignment explanation
Indices: 1163879--1163912 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1163869 ATCCACTAAT
*
1163879 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
1163896 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
1163913 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:1168539 original size:17 final size:17
Alignment explanation
Indices: 1168517--1168550 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1168507 ATCCACTAAT
*
1168517 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
1168534 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
1168551 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:1172854 original size:26 final size:26
Alignment explanation
Indices: 1172825--1172922 Score: 160
Period size: 26 Copynumber: 3.8 Consensus size: 26
1172815 TGACAATAAG
1172825 TTAGGTAAATGTTCCATGATAATGGA
1 TTAGGTAAATGTTCCATGATAATGGA
* *
1172851 TTAGGTAAATATTCCATGATAATGGG
1 TTAGGTAAATGTTCCATGATAATGGA
* *
1172877 TTAGATAAATGTTCCATGATAATGGT
1 TTAGGTAAATGTTCCATGATAATGGA
1172903 TTAGGTAAATGTTCCATGAT
1 TTAGGTAAATGTTCCATGAT
1172923 CGGCATTTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (26 bp):
TTAGGTAAATGTTCCATGATAATGGA
Found at i:1176755 original size:11 final size:11
Alignment explanation
Indices: 1176741--1176767 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
1176731 AATATTAAAA
1176741 ATATATAGAAC
1 ATATATAGAAC
1176752 ATATATAGAAC
1 ATATATAGAAC
1176763 ATATA
1 ATATA
1176768 CAATACATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (11 bp):
ATATATAGAAC
Found at i:1176901 original size:20 final size:21
Alignment explanation
Indices: 1176848--1176903 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
1176838 ACACATATAT
*
1176848 ATATA-AATAATAGTATTAGAA
1 ATATACAAT-ATAATATTAGAA
*
1176869 GTATACAATATAATATTAGAA
1 ATATACAATATAATATTAGAA
1176890 ATATAC-ATATAATA
1 ATATACAATATAATA
1176904 GTATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.26
21 20 0.65
22 3 0.10
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (21 bp):
ATATACAATATAATATTAGAA
Found at i:1176925 original size:23 final size:21
Alignment explanation
Indices: 1176888--1176962 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 21
1176878 ATAATATTAG
*
1176888 AAATATACATATAATAGTATAAA
1 AAATATATA-ATAATA-TATAAA
1176911 AAATATATAACTAATAATATTAAA
1 AAATATATAA-TAAT-ATA-TAAA
*
1176935 AAATATATAATAATATATATA
1 AAATATATAATAATATATAAA
*
1176956 TAATATA
1 AAATATA
1176963 ATATTAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
21 9 0.20
22 4 0.09
23 18 0.39
24 15 0.33
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (21 bp):
AAATATATAATAATATATAAA
Found at i:1176937 original size:26 final size:23
Alignment explanation
Indices: 1176846--1176954 Score: 91
Period size: 23 Copynumber: 4.7 Consensus size: 23
1176836 ACACACATAT
* *
1176846 ATATATAAATAATAGTATT-AGAA
1 ATATAT-AATAATAATATTAAAAA
* * *
1176869 GTATACAAT-ATAATATT-AGAA
1 ATATATAATAATAATATTAAAAA
* *
1176890 ATATACATATAATAGTA-TAAAAA
1 ATATATA-ATAATAATATTAAAAA
1176913 ATATATAACTAATAATATTAAAAA
1 ATATATAA-TAATAATATTAAAAA
1176937 ATATATAATAATATATAT
1 ATATATAATAATA-ATAT
1176955 ATAATATAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
21 17 0.24
22 7 0.10
23 30 0.42
24 18 0.25
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATATAATAATAATATTAAAAA
Found at i:1176956 original size:14 final size:13
Alignment explanation
Indices: 1176876--1176966 Score: 70
Period size: 14 Copynumber: 7.2 Consensus size: 13
1176866 GAAGTATACA
* *
1176876 ATATAATATTAGAA
1 ATATAATAATA-AT
1176890 ATATACAT-ATAAT
1 ATATA-ATAATAAT
1176903 AGTATAA-AA-AAT
1 A-TATAATAATAAT
1176915 ATATAACTAATAAT
1 ATATAA-TAATAAT
1176929 AT-TAA-AA-AAT
1 ATATAATAATAAT
1176939 ATATAATAATATAT
1 ATATAATAATA-AT
1176953 ATATAAT-ATAAT
1 ATATAATAATAAT
1176965 AT
1 AT
1176967 TAAAAATTTA
Statistics
Matches: 65, Mismatches: 2, Indels: 22
0.73 0.02 0.25
Matches are distributed among these distances:
10 5 0.08
11 10 0.15
12 10 0.15
13 13 0.20
14 25 0.38
15 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:1176991 original size:38 final size:38
Alignment explanation
Indices: 1176913--1176992 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
1176903 AGTATAAAAA
*
1176913 ATATATAACTAATAATATTAAAAAATATATAATAATAT
1 ATATATAACTAATAATATTAAAAAATATATAATAACAT
* *
1176951 ATATATAA-T-ATAATATTAAAAATTTATTTACATAACAT
1 ATATATAACTAATAATATTAAAAA-ATATATA-ATAACAT
1176989 ATAT
1 ATAT
1176993 GAAAAACATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 13 0.35
37 6 0.16
38 18 0.49
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (38 bp):
ATATATAACTAATAATATTAAAAAATATATAATAACAT
Found at i:1177035 original size:24 final size:24
Alignment explanation
Indices: 1176955--1177035 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 24
1176945 TAATATATAT
*
1176955 ATAATATAATATTAAAAATTTATTTAC
1 ATAATATAATATT-AAAA--CATTTAC
* * *
1176982 ATAACAT-ATATGAAAAACA--TAT
1 ATAATATAATAT-TAAAACATTTAC
1177004 ATAATATAATATTAAAACATTTAC
1 ATAATATAATATTAAAACATTTAC
1177028 ATAATATA
1 ATAATATA
1177036 TACACATATG
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
22 14 0.33
23 4 0.09
24 11 0.26
26 8 0.19
27 6 0.14
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (24 bp):
ATAATATAATATTAAAACATTTAC
Found at i:1179134 original size:143 final size:139
Alignment explanation
Indices: 1178833--1179137 Score: 418
Period size: 143 Copynumber: 2.2 Consensus size: 139
1178823 GAAAAGTAGA
* *
1178833 TTTTGGAAAATAGAAATTAAAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACA
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACA
* *
1178898 TGAATTAAAACAGAAATTGGAAACACCTCAGCATGTGAGCCGAGGCTCAACTCACTTTTCGCAAT
66 TAAATTAAAACAGAAATTGGAAACACCTCAGCA-GTGAGCCGAGGCTCAACTCACTTGTCGCAAT
1178963 ATGAGTTAAT
130 ATGAGTTAAT
* * *
1178973 TTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTG-AAAAC
* * *
1179038 ATAAATTGAAAAAAACAGAAATT-GAAATTACTTCAGC-GTG-TCCTGAGGCTCAACTCACTTGT
65 ATAAATT----AAAACAGAAATTGGAAA-CACCTCAGCAGTGAGCC-GAGGCTCAACTCACTTGT
*
1179100 CGCAATATGAGTTGAT
124 CGCAATATGAGTTAAT
1179116 TTTTGAAAAACAGAAATTAAAA
1 TTTTGAAAAACAGAAATTAAAA
1179138 AAACAAAAAC
Statistics
Matches: 146, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
140 55 0.38
141 10 0.07
142 2 0.01
143 56 0.38
144 4 0.03
145 19 0.13
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (139 bp):
TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACA
TAAATTAAAACAGAAATTGGAAACACCTCAGCAGTGAGCCGAGGCTCAACTCACTTGTCGCAATA
TGAGTTAAT
Found at i:1179290 original size:86 final size:86
Alignment explanation
Indices: 1178994--1179464 Score: 540
Period size: 86 Copynumber: 5.4 Consensus size: 86
1178984 AGGAATTAAA
1178994 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT---AAAAACAGAAA
* *
1179059 TTGAAATTACTTCAGCGTGTCCTG
63 TTGAAATTACCTCAGCGTGTCCCG
* * * * * *
1179083 AGGCTCAACTCACTTGTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAACAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT--AAAAACAGAAAT
*
1179148 TGAAAATACCTCAGCATGTGAT-CCG
64 TGAAATTACCTCAGC--GTG-TCCCG
* * * * * * *
1179173 AGGCTCAACTCTCTTCTCGTAATATGAGTTGATTTTGGAAAAGTAGAAATTAAAGACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAAACAGAAATTG
1179238 AAATTACCTCAGCGTGTCCCG
66 AAATTACCTCAGCGTGTCCCG
* * *
1179259 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAAAGTATAAATTAAACA-AG-AATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAAACAGAAATT-
* * **
1179322 AAAATT-CCTCAGCATATGAGCCG
65 GAAATTACCTCAGC--GTGTCCCG
* * *
1179345 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAAATT--AAACAGGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAAACA-GAAATT
* *
1179408 AAAAATACCTCAGCGTGTCCCG
65 GAAATTACCTCAGCGTGTCCCG
1179430 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1179465 AAAAACAGAA
Statistics
Matches: 330, Mismatches: 41, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
84 13 0.04
85 48 0.15
86 113 0.34
87 10 0.03
88 48 0.15
89 47 0.14
90 50 0.15
91 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAAACAGAAATTG
AAATTACCTCAGCGTGTCCCG
Found at i:1179298 original size:176 final size:173
Alignment explanation
Indices: 1178994--1179480 Score: 621
Period size: 176 Copynumber: 2.8 Consensus size: 173
1178984 AGGAATTAAA
*
1178994 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
1 AGGCTCAACTC-TCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT----AAAACAGAAA
* * * *
1179059 TTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCACTTGTCGCAATATGAGTTGATTTTTGAAA
61 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAA
* * *
1179124 AACAGAAATTAAAAAAACAAAAACTGAAAATACCTCAGCATGTGATCCG
125 AACAGAAATTAAAAAAACAAAAACTAAAAATACCTCAGCATATGAGCCG
* * * *
1179173 AGGCTCAACTCTCTTCTCGTAATATGAGTTGATTTTGGAAAAGTAGAAATTAAAGACAGAAATTG
1 AGGCTCAACTCTC-TCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAA-ACAGAAATTG
**
1179238 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAAAGT
64 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAC
* * * *
1179303 ATAAATT----AAACAAGAATTAAAAATTCCTCAGCATATGAGCCG
128 AGAAATTAAAAAAACAAAAACTAAAAATACCTCAGCATATGAGCCG
* * *
1179345 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAAATT-AAACAGGAATTTA
1 AGGCTCAACTC-TCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAACA-GAAATTG
*
1179409 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-AAAAACA
64 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACA
1179472 GAAA-TAAAA
129 GAAATTAAAA
1179481 CATCAAAATA
Statistics
Matches: 270, Mismatches: 30, Indels: 24
0.83 0.09 0.07
Matches are distributed among these distances:
167 1 0.00
168 8 0.03
169 3 0.01
170 3 0.01
171 59 0.22
172 72 0.27
173 2 0.01
175 3 0.01
176 74 0.27
178 1 0.00
179 44 0.16
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (173 bp):
AGGCTCAACTCTCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAACAGAAATTGAA
ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGA
AATTAAAAAAACAAAAACTAAAAATACCTCAGCATATGAGCCG
Found at i:1188151 original size:46 final size:46
Alignment explanation
Indices: 1188084--1188176 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
1188074 TCCCTCTAAC
1188084 TTAAATATGCTCTGCTATTGCTAAAAAATCCCTAATTTCTATCGTT
1 TTAAATATGCTCTGCTATTGCTAAAAAATCCCTAATTTCTATCGTT
* * * *
1188130 TTAAATATTCTCTTCTATTGCTGAAAAATCCTTAATTTCTATCGTT
1 TTAAATATGCTCTGCTATTGCTAAAAAATCCCTAATTTCTATCGTT
1188176 T
1 T
1188177 CTTGTATTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (46 bp):
TTAAATATGCTCTGCTATTGCTAAAAAATCCCTAATTTCTATCGTT
Found at i:1190230 original size:38 final size:38
Alignment explanation
Indices: 1190179--1190255 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
1190169 ATATTGGGGG
1190179 TATGCTTTTTGTTGTACGGTTCATTTAATCAATCGTCT
1 TATGCTTTTTGTTGTACGGTTCATTTAATCAATCGTCT
1190217 TATGCTTTTTGTTGTACGGTTCATTTAATCAATCGTCT
1 TATGCTTTTTGTTGTACGGTTCATTTAATCAATCGTCT
1190255 T
1 T
1190256 CCTACTCTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.51
Consensus pattern (38 bp):
TATGCTTTTTGTTGTACGGTTCATTTAATCAATCGTCT
Found at i:1195216 original size:21 final size:21
Alignment explanation
Indices: 1195167--1195216 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
1195157 TTCAAGTCTT
* *
1195167 CTTCTAACTGCATCCTTGTTG
1 CTTCTAATTGCATCATTGTTG
* *
1195188 CTTCTAATTGCTTCATTTTTG
1 CTTCTAATTGCATCATTGTTG
1195209 CTTCTAAT
1 CTTCTAAT
1195217 ACCAGTTGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.10, T:0.50
Consensus pattern (21 bp):
CTTCTAATTGCATCATTGTTG
Found at i:1196054 original size:18 final size:18
Alignment explanation
Indices: 1196007--1196044 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
1195997 GTTAAAAGAT
*
1196007 AAACATCTAATTCAATTA
1 AAACATTTAATTCAATTA
1196025 AAACATTTAATTCAATTA
1 AAACATTTAATTCAATTA
1196043 AA
1 AA
1196045 TGTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (18 bp):
AAACATTTAATTCAATTA
Found at i:1196300 original size:21 final size:21
Alignment explanation
Indices: 1196274--1196316 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
1196264 ATTGTTTTAG
1196274 GTGCTGAAGGAAGACACTGGA
1 GTGCTGAAGGAAGACACTGGA
*
1196295 GTGCTGAAGGAAGACATTGGA
1 GTGCTGAAGGAAGACACTGGA
1196316 G
1 G
1196317 ATGGATGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.40, T:0.16
Consensus pattern (21 bp):
GTGCTGAAGGAAGACACTGGA
Found at i:1198532 original size:16 final size:17
Alignment explanation
Indices: 1198511--1198544 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1198501 AACTATAATT
1198511 TATTAAATAAAAT-TTA
1 TATTAAATAAAATATTA
*
1198527 TATTAATTAAAATATTA
1 TATTAAATAAAATATTA
1198544 T
1 T
1198545 TTTTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTAAATAAAATATTA
Found at i:1204820 original size:17 final size:16
Alignment explanation
Indices: 1204798--1204830 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
1204788 TCAAATAGAA
1204798 ATTATATTAATTAAAAT
1 ATTATATTAA-TAAAAT
1204815 ATTATATTAATAAAAT
1 ATTATATTAATAAAAT
1204831 GTTTAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTATATTAATAAAAT
Found at i:1205522 original size:9 final size:9
Alignment explanation
Indices: 1205487--1205528 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
1205477 TAAAATGAAC
1205487 TTTTTATCAT
1 TTTTTAT-AT
1205497 TTTTTA-AT
1 TTTTTATAT
**
1205505 TTTAAATAT
1 TTTTTATAT
1205514 TTTTTATAT
1 TTTTTATAT
1205523 TTTTTA
1 TTTTTA
1205529 AAATTATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 6 0.22
9 15 0.56
10 6 0.22
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTATAT
Found at i:1206172 original size:24 final size:25
Alignment explanation
Indices: 1206145--1206200 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
1206135 CTTTTTTTAT
*
1206145 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
1206169 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
1206194 -AAATAAA
1 TAAATAAA
1206201 TATTAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:1206186 original size:25 final size:23
Alignment explanation
Indices: 1206157--1206221 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
1206147 AATAAAAAAC
*
1206157 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
1206182 TTTAAAACATAAAAATAAAT--A
1 TTTAAAACATAAAAATAAATACA
1206203 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
1206222 AATAATGGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 4 0.11
24 4 0.11
25 11 0.29
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:1206214 original size:19 final size:20
Alignment explanation
Indices: 1206183--1206221 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
1206173 TCAAATACAT
1206183 TTAAAACATAAAAATAAATA
1 TTAAAACATAAAAATAAATA
1206203 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAATAAATA
1206222 AATAATGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
TTAAAACATAAAAATAAATA
Found at i:1207785 original size:15 final size:15
Alignment explanation
Indices: 1207761--1207797 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 15
1207751 ACTATAATTT
1207761 ATATTATATTAATTAAA
1 ATATTAT-TTAA-TAAA
1207778 ATATTATTTAATAAA
1 ATATTATTTAATAAA
1207793 ATATT
1 ATATT
1207798 TAATTTCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTATTTAATAAA
Found at i:1207910 original size:20 final size:19
Alignment explanation
Indices: 1207856--1207913 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
1207846 TGATTAAAAT
1207856 TAAATATATC-AAT-TTAA
1 TAAATATATCAAATCTTAA
*
1207873 TAAA-ATATTAAATTTCTTAA
1 TAAATATATCAAA--TCTTAA
1207893 TAAATATATCAAACTCTTAA
1 TAAATATATCAAA-TCTTAA
1207913 T
1 T
1207914 GATTGAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 4 0.12
17 6 0.18
19 1 0.03
20 15 0.45
21 7 0.21
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAATATATCAAATCTTAA
Found at i:1212646 original size:50 final size:50
Alignment explanation
Indices: 1212522--1212770 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
1212512 GATAATAACA
* * ** * *
1212522 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
1212573 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
1212623 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
1212673 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
1212728 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
1212771 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:1212700 original size:100 final size:104
Alignment explanation
Indices: 1212521--1212770 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
1212511 TGATAATAAC
**
1212521 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
1212586 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
1212623 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
1212686 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
1212728 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1212771 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:1212886 original size:13 final size:13
Alignment explanation
Indices: 1212865--1212896 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1212855 GCTTGGATCA
*
1212865 TCATCAAATAAAT
1 TCATAAAATAAAT
1212878 TCATAAAATAAAT
1 TCATAAAATAAAT
1212891 TCATAA
1 TCATAA
1212897 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:1213143 original size:30 final size:30
Alignment explanation
Indices: 1213108--1213165 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1213098 CCTCGACTCT
*
1213108 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
1213138 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
1213166 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:1220274 original size:57 final size:52
Alignment explanation
Indices: 1220104--1220296 Score: 268
Period size: 50 Copynumber: 3.7 Consensus size: 52
1220094 GATAATAACA
* *
1220104 TGCCAAAGCCATGTCCCAGACATGGTCTTATA-GGGGACCTCTC-ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCGATCTCGG
*
1220154 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCG-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCGATCTCGG
* *
1220204 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTC--GATC-T-CGG
1220260 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
1220297 ATCTCTTTAC
Statistics
Matches: 128, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
50 77 0.60
51 10 0.08
53 1 0.01
54 2 0.02
55 1 0.01
56 2 0.02
57 35 0.27
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCGATCTCGG
Found at i:1220290 original size:107 final size:100
Alignment explanation
Indices: 1220111--1220302 Score: 285
Period size: 107 Copynumber: 1.9 Consensus size: 100
1220101 ACATGCCAAA
* *
1220111 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
1220176 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
66 TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
*
1220211 GCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCATGATCTTAAGGATGCCAATGCCATGTC
1 GCCATGTCCCAGACATGGTCTTACA-GGGGACCTCTC---ATC-T-AGG-TGCCAACGCCATGTC
*
1220276 CCAGACATGGTCTTACATGGGATCTCT
59 CCAGACATGGTCTTACATGGGACCTCT
1220303 TTACCCAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
100 24 0.30
101 11 0.14
104 3 0.04
105 1 0.01
106 2 0.02
107 40 0.49
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (100 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAACGCCATGTCCCAGACA
TGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
Found at i:1220661 original size:30 final size:30
Alignment explanation
Indices: 1220626--1220683 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1220616 CCTCGACTCT
*
1220626 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
1220656 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
1220684 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:1221931 original size:21 final size:21
Alignment explanation
Indices: 1221897--1221937 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1221887 AGATAAGCGA
* * *
1221897 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
1221918 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
1221938 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:1225019 original size:4 final size:4
Alignment explanation
Indices: 1224998--1225042 Score: 72
Period size: 4 Copynumber: 11.2 Consensus size: 4
1224988 CAAAAGCATC
* *
1224998 ACAT GCAT ACAA ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1225043 TATATATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.51, C:0.24, G:0.02, T:0.22
Consensus pattern (4 bp):
ACAT
Found at i:1227623 original size:26 final size:26
Alignment explanation
Indices: 1227593--1227669 Score: 85
Period size: 26 Copynumber: 3.2 Consensus size: 26
1227583 AACAGGAGTT
1227593 CATCTTTCTTTGCGAATACCCACTTG
1 CATCTTTCTTTGCGAATACCCACTTG
** *
1227619 CATCTTTC-TTGC---TA-GGAGTT-
1 CATCTTTCTTTGCGAATACCCACTTG
1227639 CATCTTTCTTTGCGAATACCCACTTG
1 CATCTTTCTTTGCGAATACCCACTTG
1227665 CATCT
1 CATCT
1227670 GATTGCCCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
20 8 0.21
21 7 0.18
22 2 0.05
24 2 0.05
25 7 0.18
26 13 0.33
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.40
Consensus pattern (26 bp):
CATCTTTCTTTGCGAATACCCACTTG
Found at i:1228034 original size:21 final size:21
Alignment explanation
Indices: 1228008--1228048 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1227998 ATCTACTTAA
* *
1228008 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1228029 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1228049 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1231593 original size:13 final size:13
Alignment explanation
Indices: 1231575--1231601 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1231565 ATTTACAATC
1231575 TATTTTATTTTAT
1 TATTTTATTTTAT
1231588 TATTTTATTTTAT
1 TATTTTATTTTAT
1231601 T
1 T
1231602 TTTGGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TATTTTATTTTAT
Found at i:1233360 original size:16 final size:16
Alignment explanation
Indices: 1233339--1233374 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
1233329 TTTGGTTCGC
1233339 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
1233355 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
1233371 TGTA
1 TGTA
1233375 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:1233632 original size:18 final size:17
Alignment explanation
Indices: 1233611--1233645 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1233601 TTATTATTTA
*
1233611 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
1233629 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
1233646 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:1233639 original size:28 final size:27
Alignment explanation
Indices: 1233569--1233641 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
1233559 TTTATTATCA
*
1233569 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
1233597 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
1233624 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
1233642 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:1233779 original size:18 final size:17
Alignment explanation
Indices: 1233758--1233792 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1233748 TTATTATTAA
*
1233758 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
1233776 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
1233793 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:1233804 original size:147 final size:149
Alignment explanation
Indices: 1233530--1233804 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
1233520 ATGATTATTG
*
1233530 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
1233595 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
1233660 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
1233679 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
1233742 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
1233805 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:1233836 original size:54 final size:54
Alignment explanation
Indices: 1233778--1233956 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
1233768 ATTAAAATAT
*
1233778 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
1233832 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
1233895 TAT
53 -AC
*
1233898 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
1233952 ATAAT
1 ATAAT
1233957 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:1233899 original size:18 final size:17
Alignment explanation
Indices: 1233878--1233912 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1233868 TTATTATTAA
1233878 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
1233896 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
1233913 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:1234027 original size:18 final size:17
Alignment explanation
Indices: 1233988--1234019 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
1233978 TTTTAAATAA
1233988 TTAATATTAAATATATT
1 TTAATATTAAATATATT
1234005 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
1234020 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:1234044 original size:120 final size:120
Alignment explanation
Indices: 1233741--1234033 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
1233731 ATCATATTTA
1233741 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
1233806 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
1233861 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
1233926 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
1233982 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
1234034 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:1238962 original size:27 final size:27
Alignment explanation
Indices: 1238932--1238985 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
1238922 ATCATTTTCT
1238932 CTTACTTTTCTTAATGCCTAATTCACC
1 CTTACTTTTCTTAATGCCTAATTCACC
1238959 CTTACTTTTCTTAATGCCTAATTCACC
1 CTTACTTTTCTTAATGCCTAATTCACC
1238986 ATCGACTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.30, G:0.04, T:0.44
Consensus pattern (27 bp):
CTTACTTTTCTTAATGCCTAATTCACC
Found at i:1243498 original size:24 final size:24
Alignment explanation
Indices: 1243469--1243522 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
1243459 TTGATGAAAG
* *
1243469 ATGAACTGTTAAATACATGCAGAA
1 ATGAACTGTTAAACACATACAGAA
* *
1243493 ATGAACCGTTCAACACATACAGAA
1 ATGAACTGTTAAACACATACAGAA
1243517 A-GAACT
1 ATGAACT
1243523 TACTTTTCCC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (24 bp):
ATGAACTGTTAAACACATACAGAA
Found at i:1249403 original size:20 final size:20
Alignment explanation
Indices: 1249374--1249412 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1249364 TGTGAAGCTT
*
1249374 ATTGAAGAGTGTTTTGTATA
1 ATTGAAGAGTATTTTGTATA
*
1249394 ATTGATGAGTATTTTGTAT
1 ATTGAAGAGTATTTTGTAT
1249413 TTGAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (20 bp):
ATTGAAGAGTATTTTGTATA
Found at i:1250122 original size:9 final size:8
Alignment explanation
Indices: 1250091--1250133 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 8
1250081 TTCTCCGTCA
1250091 CTCCTCCT
1 CTCCTCCT
1250099 CTCCT-CT
1 CTCCTCCT
1250106 GCTCCTCCT
1 -CTCCTCCT
1250115 CTTCCTCCT
1 C-TCCTCCT
1250124 CTTCCTCCT
1 C-TCCTCCT
1250133 C
1 C
1250134 AGCATCCACG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 2 0.06
8 11 0.34
9 19 0.59
ACGTcount: A:0.00, C:0.58, G:0.02, T:0.40
Consensus pattern (8 bp):
CTCCTCCT
Found at i:1259955 original size:19 final size:20
Alignment explanation
Indices: 1259915--1259958 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
1259905 GTCTCTTTAG
* *
1259915 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
1259934 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
1259953 GCATTA
1 GCATTA
1259959 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:1262544 original size:8 final size:8
Alignment explanation
Indices: 1262531--1262564 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
1262521 TTAGACTAGA
1262531 AAAAAATC
1 AAAAAATC
1262539 AAAAAATC
1 AAAAAATC
*
1262547 -AAAAATA
1 AAAAAATC
1262554 AAAAAATC
1 AAAAAATC
1262562 AAA
1 AAA
1262565 GTCAAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATC
Found at i:1262571 original size:15 final size:15
Alignment explanation
Indices: 1262532--1262564 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1262522 TAGACTAGAA
*
1262532 AAAAATCAAAAAATC
1 AAAAATAAAAAAATC
1262547 AAAAATAAAAAAATC
1 AAAAATAAAAAAATC
1262562 AAA
1 AAA
1262565 GTCAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAAAATC
Found at i:1262986 original size:13 final size:14
Alignment explanation
Indices: 1262934--1262978 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
1262924 TCAAAAAAGA
*
1262934 AAAAGATGAAGAATG
1 AAAA-ATGAAAAATG
*
1262949 -AAAATGGAAAATG
1 AAAAATGAAAAATG
1262962 AAAAATGAAAAATG
1 AAAAATGAAAAATG
1262976 AAA
1 AAA
1262979 GAGTAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:1264460 original size:85 final size:85
Alignment explanation
Indices: 1264225--1264501 Score: 430
Period size: 84 Copynumber: 3.2 Consensus size: 85
1264215 ATCAGTGAAC
1264225 ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
1 ATCGAAAAC-AAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
*
1264290 CCTGCGTTAACAACGAAGCAG
65 CCTACGTTAACAACGAAGCAG
*
1264311 ATCGAAAACAATCCTTG-CTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
1 ATCGAAAACAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
1264375 CTACGTTAACAACGAAGCAG
66 CTACGTTAACAACGAAGCAG
* **
1264395 ATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTTC
1 ATCGAAAACAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
* * * *
1264460 CTACATTGACAGCGAAGTAG
66 CTACGTTAACAACGAAGCAG
*
1264480 ATCGAGGACACAAGCCTTGCCT
1 ATCGA--AAACAAGCCTTGCCT
1264502 CCCTTAGTTG
Statistics
Matches: 177, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
84 82 0.46
85 72 0.41
86 9 0.05
87 14 0.08
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (85 bp):
ATCGAAAACAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
CTACGTTAACAACGAAGCAG
Found at i:1264565 original size:169 final size:168
Alignment explanation
Indices: 1264225--1264547 Score: 369
Period size: 169 Copynumber: 1.9 Consensus size: 168
1264215 ATCAGTGAAC
*
1264225 ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
1 ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTACCTT
* * * * * * * * *
1264290 CCTGCGTTAACAACGAAGCAGATCGAAAACAATCCTTGCTTCATTGGTTACAGTGGAGCTGGTTA
66 CCTACATTAACAACGAAGCAGATCGAAAACAAGCCTTGCTCCATTAGTTACAGGGGAGCAGATCA
* * *
1264355 AAGAAGCAGATCTTGCCTTCCTACGTTAACAACGAAGCAG
131 AAGAAGCAAATCTTACCTTCCTAAGTT-A-AACGAAGCAG
* *
1264395 ATCGAAAAC-AAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTT
1 ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTACCTT
* * * * * **
1264459 CCTACATTGACAGCGAAGTAGATCGAGGACACAAGCCTTGCCTCCCTTAGTTGTAGGGGAGCAGA
66 CCTACATTAACAACGAAGCAGATCGA--AAACAAGCCTTG-CTCCATTAGTTACAGGGGAGCAGA
* *
1264524 TCAAAGACATCAAATCTTATCTTC
128 TCAAAGA-AGCAAATCTTACCTTC
1264548 AAGTGTAAGG
Statistics
Matches: 126, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
169 73 0.58
170 9 0.07
171 10 0.08
172 22 0.17
173 12 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (168 bp):
ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTACCTT
CCTACATTAACAACGAAGCAGATCGAAAACAAGCCTTGCTCCATTAGTTACAGGGGAGCAGATCA
AAGAAGCAAATCTTACCTTCCTAAGTTAAACGAAGCAG
Found at i:1264724 original size:44 final size:43
Alignment explanation
Indices: 1264619--1265307 Score: 306
Period size: 44 Copynumber: 15.7 Consensus size: 43
1264609 TGGAAATTTC
* * * * * *
1264619 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAT
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT-TAAAATAA
* *
1264663 A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * *** *
1264705 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 A-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * * * ** **
1264747 AGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAATTTC
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAA
* * * * * *
1264793 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAT
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT-TAAAATAA
* *
1264837 A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * *** *
1264879 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 A-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * * * * *
1264921 AGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAT-A-A
* * *
1264966 AG-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGATAGCA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAA-ATA--A
* * *
1265011 A-ATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTTATAAATAAA
1 AGATCTTATCTCCCTGAAGTTACAGTGG-A-GCA--G-A-TTA-AAAT-AA
* * * * * * *
1265061 CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAT
1 -AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT-TAAAATAA
* *
1265106 A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * *** *
1265148 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 A-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
* * * * * * *
1265190 AGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAT-A-A
* * * *
1265235 AG-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCA
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAAAATA--A
* *
1265280 A-ATCTTATTTCCCTGAAATTACAGTGGA
1 AGATCTTATCTCCCTGAAGTTACAGTGGA
1265308 ATGGATTGAA
Statistics
Matches: 481, Mismatches: 127, Indels: 73
0.71 0.19 0.11
Matches are distributed among these distances:
41 81 0.17
42 22 0.05
43 95 0.20
44 144 0.30
45 60 0.12
46 39 0.08
47 4 0.01
48 1 0.00
49 1 0.00
50 4 0.01
51 6 0.01
52 24 0.05
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAA
Found at i:1264811 original size:174 final size:174
Alignment explanation
Indices: 1264613--1264998 Score: 688
Period size: 174 Copynumber: 2.2 Consensus size: 174
1264603 ATAGGTTGGA
1264613 AATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
1 AATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
1264678 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
1264743 CATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAG
131 CATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAG
1264787 AATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
1 AATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
1264852 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
**
1264917 CATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAG
131 CATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAG
** * *
1264961 --TCACA-AGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGA
1 AATTTCAGA-TCTTATCTCCCTGAGGTTACAGCGGAGCAGA
1264999 CTAAAGATAG
Statistics
Matches: 205, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
171 1 0.00
172 32 0.16
174 172 0.84
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (174 bp):
AATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
CATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAG
Found at i:1265033 original size:89 final size:87
Alignment explanation
Indices: 1264619--1265319 Score: 457
Period size: 85 Copynumber: 8.0 Consensus size: 87
1264609 TGGAAATTTC
* * * *
1264619 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGA-AGACATAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGATAG-CA-AATCTTATTTCCCTGAAGTT
* * *
1264683 ACAGTGGAGCGGATTAAAAT-A-A
64 ACAGTGGAGTGGATTGAAGTCACA
* ** * * ** *
1264705 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT--CAGGTCTTATTTCCCTGAGGTT
1 A-GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAG-ATAGCAAATCTTATTTCCCTGAAGTT
* * ** **
1264768 ACAGCGGAGTAGACCGAAGAATTTC-
64 ACAGTGGAGTGGATTGAAG--TCACA
* * * *
1264793 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGA-AGACATAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGATAG-CA-AATCTTATTTCCCTGAAGTT
* * *
1264857 ACAGTGGAGCGGATTAAAAT-A-A
64 ACAGTGGAGTGGATTGAAGTCACA
* ** * * ** *
1264879 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT--CAGGTCTTATTTCCCTGAGGTT
1 A-GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAG-ATAGCAAATCTTATTTCCCTGAAGTT
* *
1264942 ACAGCGGAGTAGATTGAAGTCACA
64 ACAGTGGAGTGGATTGAAGTCACA
* *
1264966 AG-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAAT
1 AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGA-T--AGATAGCAAATCTTATTTCCCTGAAGT
* * *
1265030 TACAGTGGAATGGATTGAAGTTATAAATAAA
63 TACAGTGGAGTGGATTGAAG---T---CACA
* * * * *
1265061 CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGA-AGACATAATCCTATCTCCCTGAAGT
1 -AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGATAG-CA-AATCTTATTTCCCTGAAGT
* * *
1265125 TACAGTGGAGCGGATTAAAAT-A-A
63 TACAGTGGAGTGGATTGAAGTCACA
* ** * * ** *
1265148 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT--CAGGTCTTATTTCCCTGAGGTT
1 A-GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAG-ATAGCAAATCTTATTTCCCTGAAGTT
* *
1265211 ACAGCGGAGTAGATTGAAGTCACA
64 ACAGTGGAGTGGATTGAAGTCACA
* *
1265235 AG-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAAT
1 AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGA-T--AGATAGCAAATCTTATTTCCCTGAAGT
*
1265299 TACAGTGGAATGGATTGAAGT
63 TACAGTGGAGTGGATTGAAGT
1265320 TATAAATAAA
Statistics
Matches: 467, Mismatches: 106, Indels: 81
0.71 0.16 0.12
Matches are distributed among these distances:
85 139 0.30
86 16 0.03
87 134 0.29
88 9 0.02
89 96 0.21
92 2 0.00
93 2 0.00
94 4 0.01
95 34 0.07
96 3 0.01
97 28 0.06
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (87 bp):
AGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATAGATAGCAAATCTTATTTCCCTGAAGTTAC
AGTGGAGTGGATTGAAGTCACA
Found at i:1265096 original size:269 final size:269
Alignment explanation
Indices: 1264792--1265347 Score: 1094
Period size: 269 Copynumber: 2.1 Consensus size: 269
1264782 CGAAGAATTT
*
1264792 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTT
1 CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTT
1264857 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
1264922 GGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTG
131 GGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTG
1264987 CAGCGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTT
196 CAGCGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTT
1265052 ATAAATAAA
261 ATAAATAAA
1265061 CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTT
1 CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTT
1265126 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
1265191 GGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTG
131 GGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTG
*
1265256 CAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTT
196 CAGCGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTT
1265321 ATAAATAAA
261 ATAAATAAA
1265330 CAGACCTTATCTCCCTGA
1 CAGACCTTATCTCCCTGA
1265348 AGTTGCAGTG
Statistics
Matches: 285, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
269 285 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (269 bp):
CAGACCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
GGTCTTATTTCCCTGAGGTTACAGCGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTG
CAGCGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAATGGATTGAAGTT
ATAAATAAA
Found at i:1281764 original size:567 final size:566
Alignment explanation
Indices: 1280888--1282006 Score: 1514
Period size: 568 Copynumber: 2.0 Consensus size: 566
1280878 TCTTCCGTGG
* *
1280888 AGAGAGAATTTCACTAAGAGTAAGTTGAACTCAAAATATTATAATCTTTGATATTTTAATTTTAC
1 AGAGAGAATTCCACTAAGAGTAAGTTGAACTCAAAATATTATAATCTTTGATATTTTAATATTAC
*** *
1280953 CATTTCAATCAAAATTATTTTTTATAACATTTTTTTTAAAATTTGTTGGTACATTTTTCATCTAC
66 CATTTCAATCAAAA-TATAAATTATAACATCTTTTTTAAAATTTGTTGGTACATTTTTCATCTAC
* * * * * * *
1281018 ATTTTTTAGGTGATGGATGCCTTTTATTACGTATAATGGATGTGGCTGGCAGTAGGGGCGAAGCC
130 ATTTTTTAGCTGATGGATGACTATTATTACGTATAATAGATGTGGATGGCAGCAGGGGCAAAGCC
* * *
1281083 AGAATTTTTTTAGGGGGCGGAAATAAAATTTTAATTTTTAATAGTCTATATTTTTATAATTTTTA
195 AGAAGTTTTTTAGGGGACCGAAATAAAATTTTAATTTTTAATAGTCTATATTTTTATAATTTTTA
* * * *
1281148 AATGATTAAATTAAATTTTTATAATTTTAGAGGGGCAAAGTGTAATTTTACATTTATTAATTTAA
260 AATGATTAAATTAAATTTTTATAATTTAAAAGGGGAAAAGTGTAATTTTACATTTATCAATTTAA
* * * * ** * *
1281213 AATATTAAAATTTTCTAAATGGCCAAAATAACAATTTTCCATTTTAG-GGGGCCGGGGCCCCTG-
325 AATATTAAAATTTTCTAAAAGGCCAAAACAACAATGTTCCATCTTAGAAAGACCAGGGCCCCTGT
* * *
1281276 CGAGGCCTCCCA-GATTCACCTCTGGCTAGCGGTTTGGTTTTATTGGATAATGATGCTATATGAG
390 C-A---ATCCCATGATTCACCTCTGGCTAGCAGTTTGGTTTTATTAGATAATGATGCTATATGAG
* * * *
1281340 TGAATGAAAGGTTAATATCAGTAAATTTGTATGGGAAACCCTGAGCCAACTTTGAAAGATGTAAA
451 TAAATAAAAGGTTAATATCAATAAATTTGTATGGGAAACCCTGAGCCAACTTTAAAAGATGTAAA
* *
1281405 AAATACATGTGGTTGATAATACAATTTATCATGTGATCTATAAAAATATAT
516 AAAGACATGTGGTTGATAATACAATTTACCATGTGATCTATAAAAATATAT
* *
1281456 AGAGAGAATTCCACTAAGAGTAATTTGAACTCAAAATATTATAATCTTTGATATTTTACTATTAC
1 AGAGAGAATTCCACTAAGAGTAAGTTGAACTCAAAATATTATAATCTTTGATATTTTAATATTAC
*
1281521 CATTTCAAT-AAAA-A-AAATTATAACATCTTTTTTAAAATTTGTTGGTACATTTTTCATCTATA
66 CATTTCAATCAAAATATAAATTATAACATCTTTTTTAAAATTTGTTGGTACATTTTTCATCTACA
* * * * *
1281583 TTTTTTAGCTGATGGATGACTATTATTTCGTCTAATAGATGTGGATGGCTGCAGGGGTAAAGCTA
131 TTTTTTAGCTGATGGATGACTATTATTACGTATAATAGATGTGGATGGCAGCAGGGGCAAAGCCA
*
1281648 GAAAGTTTTTTAGGATGGACCGAAATGAAATTTTAATTTTTAATAGTCTATATTTTTATAATTTT
196 G-AAGTTTTTTAGG--GGACCGAAATAAAATTTTAATTTTTAATAGTCTATATTTTTATAATTTT
* *
1281713 TAAATGATTAAATT-AATTTTTCATAATTTAAAAGGGTAAAAGTGTAATTTTACCTTTATCAATT
258 TAAATGATTAAATTAAATTTTT-ATAATTTAAAAGGGGAAAAGTGTAATTTTACATTTATCAATT
* * * ** *
1281777 TTAAATTTTAAAATTTTCTAAAAGGTCAAAACAACAATGTTCCATCTTAGAAAGATTATGGCCCC
322 TAAAATATTAAAATTTTCTAAAAGGCCAAAACAACAATGTTCCATCTTAGAAAGACCAGGGCCCC
** *
1281842 TGTCAATCCCATTGGATTTGCCTCTGGCTGGCAGTTTGGTTTTATTAGATAATGATGCTATATGA
387 TGTCAATCCCA-T-GATTCACCTCTGGCTAGCAGTTTGGTTTTATTAGATAATGATGCTATATGA
** * * *
1281907 GTAAATAAAAGGTTAATATCAATCTATTTGTATGGTAAACTCTTAGCCAACTTTAAAAGATGTAA
450 GTAAATAAAAGGTTAATATCAATAAATTTGTATGGGAAACCCTGAGCCAACTTTAAAAGATGTAA
* *
1281972 CAAAGACATGTGGTTGATAATGCAATTTACCATGT
515 AAAAGACATGTGGTTGATAATACAATTTACCATGT
1282007 CCGTAAAAAT
Statistics
Matches: 478, Mismatches: 64, Indels: 18
0.85 0.11 0.03
Matches are distributed among these distances:
564 97 0.20
565 17 0.04
566 7 0.01
567 143 0.30
568 213 0.45
569 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (566 bp):
AGAGAGAATTCCACTAAGAGTAAGTTGAACTCAAAATATTATAATCTTTGATATTTTAATATTAC
CATTTCAATCAAAATATAAATTATAACATCTTTTTTAAAATTTGTTGGTACATTTTTCATCTACA
TTTTTTAGCTGATGGATGACTATTATTACGTATAATAGATGTGGATGGCAGCAGGGGCAAAGCCA
GAAGTTTTTTAGGGGACCGAAATAAAATTTTAATTTTTAATAGTCTATATTTTTATAATTTTTAA
ATGATTAAATTAAATTTTTATAATTTAAAAGGGGAAAAGTGTAATTTTACATTTATCAATTTAAA
ATATTAAAATTTTCTAAAAGGCCAAAACAACAATGTTCCATCTTAGAAAGACCAGGGCCCCTGTC
AATCCCATGATTCACCTCTGGCTAGCAGTTTGGTTTTATTAGATAATGATGCTATATGAGTAAAT
AAAAGGTTAATATCAATAAATTTGTATGGGAAACCCTGAGCCAACTTTAAAAGATGTAAAAAAGA
CATGTGGTTGATAATACAATTTACCATGTGATCTATAAAAATATAT
Found at i:1286983 original size:13 final size:13
Alignment explanation
Indices: 1286965--1286989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1286955 TAGAGGGGTT
1286965 TTAAAATTAAAAA
1 TTAAAATTAAAAA
1286978 TTAAAATTAAAA
1 TTAAAATTAAAA
1286990 CCTTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAATTAAAAA
Found at i:1290623 original size:18 final size:18
Alignment explanation
Indices: 1290602--1290656 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
1290592 CCATACTCAT
1290602 TAAAATATATTTAAAAAG
1 TAAAATATATTTAAAAAG
*
1290620 TAAAA-ACAATTTAATAAA-
1 TAAAATA-TATTTAA-AAAG
1290638 TAAAACTATA-TTAAAAAG
1 TAAAA-TATATTTAAAAAG
1290656 T
1 T
1290657 TTTAACAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 4 0.13
20 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (18 bp):
TAAAATATATTTAAAAAG
Found at i:1295344 original size:71 final size:71
Alignment explanation
Indices: 1295265--1295404 Score: 262
Period size: 71 Copynumber: 2.0 Consensus size: 71
1295255 TCTGTCAACC
*
1295265 ACACCAGTTTTTAATAGTACAAATAGATGAAATTTTTAATAAAAAAGATTAATTTGCTCTTTAAT
1 ACACCAGTTTTTAATAGTACAAATAGATGAAATTTTTAATAAAAAAGATCAATTTGCTCTTTAAT
1295330 CTAACT
66 CTAACT
*
1295336 ACACCAGTTTTTAATAGTACAAATGGATGAAATTTTTAATAAAAAAGATCAATTTGCTCTTTAAT
1 ACACCAGTTTTTAATAGTACAAATAGATGAAATTTTTAATAAAAAAGATCAATTTGCTCTTTAAT
1295401 CTAA
66 CTAA
1295405 TGTACCGGAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.37
Consensus pattern (71 bp):
ACACCAGTTTTTAATAGTACAAATAGATGAAATTTTTAATAAAAAAGATCAATTTGCTCTTTAAT
CTAACT
Found at i:1295631 original size:38 final size:38
Alignment explanation
Indices: 1295589--1295667 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 38
1295579 TAATGTTCAT
* *
1295589 TAAATATTATGCTAAATAGTAT-TTA-GAAATTAAAATAA
1 TAAAT-TTATGCTAAATAGCATATCATG-AATTAAAATAA
**
1295627 TAAATTTATTTTAAATAGCATATCATGAATTAAAATAA
1 TAAATTTATGCTAAATAGCATATCATGAATTAAAATAA
1295665 TAA
1 TAA
1295668 TTATGAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
37 13 0.37
38 21 0.60
39 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (38 bp):
TAAATTTATGCTAAATAGCATATCATGAATTAAAATAA
Found at i:1299415 original size:7 final size:7
Alignment explanation
Indices: 1299403--1299427 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1299393 GTATAGGGAC
1299403 TAAATTT
1 TAAATTT
1299410 TAAATTT
1 TAAATTT
1299417 TAAATTT
1 TAAATTT
1299424 TAAA
1 TAAA
1299428 AGAGTATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:1299953 original size:31 final size:31
Alignment explanation
Indices: 1299918--1299988 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
1299908 TTAATATGTC
*
1299918 ATTTGGTACATGCA-TTTGACTTTAATGTTT-A
1 ATTTGGTACATG-AGTTTAACTTTAAT-TTTAA
*
1299949 ATTTGGTACTTGAGTTTAACTTTAATTTTAA
1 ATTTGGTACATGAGTTTAACTTTAATTTTAA
*
1299980 ATTCGGTAC
1 ATTTGGTAC
1299989 CGAGAAAGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTTGGTACATGAGTTTAACTTTAATTTTAA
Found at i:1310625 original size:19 final size:19
Alignment explanation
Indices: 1310603--1310639 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1310593 TTGTATTTGT
*
1310603 TTAATAAAAAATAATTTAA
1 TTAACAAAAAATAATTTAA
*
1310622 TTAACGAAAAATAATTTA
1 TTAACAAAAAATAATTTA
1310640 CTGATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (19 bp):
TTAACAAAAAATAATTTAA
Found at i:1310854 original size:22 final size:22
Alignment explanation
Indices: 1310829--1310890 Score: 54
Period size: 25 Copynumber: 2.7 Consensus size: 22
1310819 ACATACATAC
*
1310829 TTATATTTAATAATATAATAAA
1 TTATATTTAATAAAATAATAAA
* *
1310851 TTATTAATATAATTAAAATAATTAA
1 TTA-T-ATTTAA-TAAAATAATAAA
*
1310876 TTAT-TTTAATGAAAT
1 TTATATTTAATAAAAT
1310891 TATTGAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
21 5 0.16
22 7 0.22
23 1 0.03
24 6 0.19
25 13 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TTATATTTAATAAAATAATAAA
Found at i:1315410 original size:44 final size:45
Alignment explanation
Indices: 1315360--1315452 Score: 127
Period size: 47 Copynumber: 2.1 Consensus size: 45
1315350 ATTAAAATAA
*
1315360 AATAAAAATT-T-TAATAATTACATATTTAAAAATAACTATAATTT
1 AATAAAAATTATATAATAATTACACATTTAAAAAT-ACTATAATTT
* *
1315404 AATAAAAATTATGATAATGATTACACATTTAAAAATATTATAATTT
1 AATAAAAATTAT-ATAATAATTACACATTTAAAAATACTATAATTT
1315450 AAT
1 AAT
1315453 TTATAATTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 10 0.23
45 1 0.02
46 12 0.28
47 20 0.47
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (45 bp):
AATAAAAATTATATAATAATTACACATTTAAAAATACTATAATTT
Found at i:1316940 original size:16 final size:16
Alignment explanation
Indices: 1316919--1316951 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1316909 ATTCATGAAT
1316919 GAGGTTGCAAGCATTA
1 GAGGTTGCAAGCATTA
1316935 GAGGTTGCAAGCATTA
1 GAGGTTGCAAGCATTA
1316951 G
1 G
1316952 TAGAACTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.24
Consensus pattern (16 bp):
GAGGTTGCAAGCATTA
Found at i:1322458 original size:2 final size:2
Alignment explanation
Indices: 1322451--1322536 Score: 52
Period size: 2 Copynumber: 43.5 Consensus size: 2
1322441 AATGCCATTA
* ** *
1322451 AT AT AT AT AT ACT -T A- AT AT AT AT AT AT ACT -T AC AT GC AT AC
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* * * * *
1322492 AT AT AT AT AT AC AT AC AT AC AT AC AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1322534 AT A
1 AT A
1322537 AAAAGAAAAG
Statistics
Matches: 61, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
1 3 0.05
2 56 0.92
3 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.40
Consensus pattern (2 bp):
AT
Found at i:1322468 original size:15 final size:15
Alignment explanation
Indices: 1322448--1322476 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1322438 GCAAATGCCA
1322448 TTAATATATATATAC
1 TTAATATATATATAC
1322463 TTAATATATATATA
1 TTAATATATATATA
1322477 TACTTACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAATATATATATAC
Found at i:1322497 original size:20 final size:19
Alignment explanation
Indices: 1322455--1322534 Score: 64
Period size: 20 Copynumber: 4.4 Consensus size: 19
1322445 CCATTAATAT
*
1322455 ATATATACTTA-AT-ATAT
1 ATATATACTTACATCATAC
1322472 ATATATACTTACATGCATAC
1 ATATATACTTACAT-CATAC
1322492 ATATATA-TATACATACATAC
1 ATATATACT-TACAT-CATAC
* *
1322512 ATACATA--TACAT-ATAT
1 ATATATACTTACATCATAC
1322528 ATATATA
1 ATATATA
1322535 TAAAAAGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
16 9 0.17
17 11 0.20
18 7 0.13
19 1 0.02
20 26 0.48
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (19 bp):
ATATATACTTACATCATAC
Found at i:1322498 original size:24 final size:24
Alignment explanation
Indices: 1322468--1322526 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
1322458 TATACTTAAT
* *
1322468 ATATATATATACTTACATGCATAC
1 ATATATATATACATACATACATAC
1322492 ATATATATATACATACATACATAC
1 ATATATATATACATACATACATAC
*
1322516 ATATACATATA
1 ATATATATATA
1322527 TATATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (24 bp):
ATATATATATACATACATACATAC
Found at i:1334911 original size:26 final size:25
Alignment explanation
Indices: 1334849--1334911 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
1334839 GATCTTCCCA
* *
1334849 TATTATTTTTTGAAATTTATTTATTT
1 TATTA-TTTTTGAAATTTAATAATTT
* *
1334875 TATTCTATTTTGATATTTAATAATTT
1 TATTAT-TTTTGAAATTTAATAATTT
1334901 TATATATTTTT
1 TAT-TATTTTT
1334912 ATTTATTGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.03
26 27 0.90
27 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (25 bp):
TATTATTTTTGAAATTTAATAATTT
Found at i:1335793 original size:17 final size:17
Alignment explanation
Indices: 1335759--1335793 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1335749 ATAAATTATT
* *
1335759 AAAAATAAAAATATTTA
1 AAAAATAAAAAAAATTA
1335776 AAAAATAAAAAAAATTA
1 AAAAATAAAAAAAATTA
1335793 A
1 A
1335794 TTCAATCGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAATAAAAAAAATTA
Found at i:1337730 original size:24 final size:23
Alignment explanation
Indices: 1337685--1337732 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
1337675 AAACTTAAAA
**
1337685 TTTAAAAAAAAAAGAATTAAATT
1 TTTAAAAAAAAAAGAAAAAAATT
*
1337708 TTTAAAAATAAAAATAAAAAAATT
1 TTTAAAAA-AAAAAGAAAAAAATT
1337732 T
1 T
1337733 AAATTTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
TTTAAAAAAAAAAGAAAAAAATT
Found at i:1337733 original size:22 final size:22
Alignment explanation
Indices: 1337681--1337735 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
1337671 AATAAAACTT
1337681 AAAATTTAAAAAAAAAAGAATTA
1 AAAATTTAAAAAAAAAAGAA-TA
** *
1337704 AATTTTTAAAAATAAAAATAA-A
1 AAAATTTAAAAA-AAAAAGAATA
1337726 AAAATTTAAA
1 AAAATTTAAA
1337736 TTTTAATGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 9 0.35
23 10 0.38
24 7 0.27
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAATTTAAAAAAAAAAGAATA
Found at i:1356800 original size:42 final size:42
Alignment explanation
Indices: 1356754--1356839 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
1356744 TGGAAAAGAA
1356754 AAATCTAAGACAACAATGTCGGATTCAACCAAATCAGAAATG
1 AAATCTAAGACAACAATGTCGGATTCAACCAAATCAGAAATG
1356796 AAATCTAAGACAACAATGTCGGATTCAACCAAATCAGAAATG
1 AAATCTAAGACAACAATGTCGGATTCAACCAAATCAGAAATG
1356838 AA
1 AA
1356840 GTGTAATTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (42 bp):
AAATCTAAGACAACAATGTCGGATTCAACCAAATCAGAAATG
Found at i:1358381 original size:29 final size:28
Alignment explanation
Indices: 1358311--1358381 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
1358301 TAACGTTCAA
* *
1358311 TGATTTTAAAATTTAGTCTTTGTACTTT
1 TGATTTTAAAATTTAGTCTCTATACTTT
1358339 T-ATTTTCAAGAATTTAGTC-CTATACTTT
1 TGATTTT-AA-AATTTAGTCTCTATACTTT
1358367 TCAGATTTTAAAATT
1 T--GATTTTAAAATT
1358382 CAAGGTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 5 0.14
28 11 0.31
29 13 0.36
30 2 0.06
31 5 0.14
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (28 bp):
TGATTTTAAAATTTAGTCTCTATACTTT
Found at i:1363241 original size:28 final size:28
Alignment explanation
Indices: 1363201--1363268 Score: 120
Period size: 28 Copynumber: 2.4 Consensus size: 28
1363191 TTTTTTTTCT
1363201 TTTTTCACACTTGATATATGATCTTACA
1 TTTTTCACACTTGATATATGATCTTACA
1363229 TTTTTCACACTTGATATATGATCTTACA
1 TTTTTCACACTTGATATATGATCTTACA
1363257 TTTTATCA-ACTT
1 TTTT-TCACACTT
1363269 ATCAAGTCCT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 36 0.92
29 3 0.08
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.49
Consensus pattern (28 bp):
TTTTTCACACTTGATATATGATCTTACA
Found at i:1368196 original size:19 final size:19
Alignment explanation
Indices: 1368172--1368235 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
1368162 CAAAATTATA
*
1368172 AAAATATCATTTTATATTT
1 AAAATATAATTTTATATTT
*
1368191 AAAATA-AATTATATTATTT
1 AAAATATAATTTTA-TATTT
*
1368210 AAGAATATTATTTT-TATTT
1 AA-AATATAATTTTATATTT
*
1368229 AATATAT
1 AAAATAT
1368236 GTGCACGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 9 0.24
19 20 0.54
20 4 0.11
21 4 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
AAAATATAATTTTATATTT
Found at i:1369761 original size:22 final size:22
Alignment explanation
Indices: 1369736--1369799 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
1369726 TTTAACTCTC
1369736 TTTATATATTTTTTAGAATTTT
1 TTTATATATTTTTTAGAATTTT
*
1369758 TTTATA-A-ATTTTAGAATTTT
1 TTTATATATTTTTTAGAATTTT
** * *
1369778 TAAAAATATTTTTTAAAATTTT
1 TTTATATATTTTTTAGAATTTT
1369800 AAATTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 15 0.44
21 2 0.06
22 17 0.50
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (22 bp):
TTTATATATTTTTTAGAATTTT
Found at i:1369763 original size:20 final size:20
Alignment explanation
Indices: 1369705--1369778 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
1369695 ACAAATATTA
* *
1369705 TTTTTAGAA-TTTTTAAAAT
1 TTTTTAGAATTTTTTTATAT
* *
1369724 TTTTTA-ACTCTCTTTATATAT
1 TTTTTAGAAT-T-TTTTTATAT
*
1369745 TTTTTAGAATTTTTTTATAA
1 TTTTTAGAATTTTTTTATAT
*
1369765 ATTTTAGAATTTTT
1 TTTTTAGAATTTTT
1369779 AAAAATATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
18 1 0.02
19 6 0.14
20 21 0.49
21 13 0.30
22 2 0.05
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTTTAGAATTTTTTTATAT
Found at i:1369778 original size:29 final size:29
Alignment explanation
Indices: 1369755--1369818 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 29
1369745 TTTTTAGAAT
1369755 TTTTTTATAAATTTTAGAATTTTTAAAAATA
1 TTTTTTA-AAATTTTA-AATTTTTAAAAATA
*
1369786 TTTTTTAAAATTTTAAATTATTT-TAAATA
1 TTTTTTAAAATTTTAAATT-TTTAAAAATA
1369815 TTTT
1 TTTT
1369819 AATTTTTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 13 0.42
30 11 0.35
31 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (29 bp):
TTTTTTAAAATTTTAAATTTTTAAAAATA
Found at i:1369788 original size:20 final size:20
Alignment explanation
Indices: 1369706--1369789 Score: 57
Period size: 20 Copynumber: 4.2 Consensus size: 20
1369696 CAAATATTAT
*
1369706 TTTTAGAATTTTT-AAAATT
1 TTTTAGAATTTTTAAAAATA
* * * *
1369725 TTTTA-ACTCTCTTTATATATT
1 TTTTAGAAT-T-TTTAAAAATA
* *
1369746 TTTTAGAATTTTTTTATAA-A
1 TTTTAGAA-TTTTTAAAAATA
1369766 TTTTAGAATTTTTAAAAATA
1 TTTTAGAATTTTTAAAAATA
1369786 TTTT
1 TTTT
1369790 TTAAAATTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 11
0.69 0.16 0.16
Matches are distributed among these distances:
18 2 0.04
19 14 0.29
20 16 0.33
21 13 0.27
22 2 0.04
23 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTAGAATTTTTAAAAATA
Found at i:1369808 original size:10 final size:9
Alignment explanation
Indices: 1369788--1369820 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
1369778 TAAAAATATT
1369788 TTTTAAA-A
1 TTTTAAATA
1369796 TTTTAAATTA
1 TTTTAAA-TA
1369806 TTTTAAATA
1 TTTTAAATA
1369815 TTTTAA
1 TTTTAA
1369821 TTTTTGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 7 0.30
9 8 0.35
10 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTTTAAATA
Found at i:1379644 original size:28 final size:27
Alignment explanation
Indices: 1379592--1379644 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
1379582 TAATTATTTT
*
1379592 ATATTATTTTTTTGTTTTTTAAATAAA
1 ATATTATTTTTTTGTTTTTCAAATAAA
1379619 ATATTATTTTTTT-TATTTTCAGAATA
1 ATATTATTTTTTTGT-TTTTCA-AATA
1379645 GTAATTGCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 1 0.04
27 18 0.78
28 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (27 bp):
ATATTATTTTTTTGTTTTTCAAATAAA
Found at i:1380639 original size:212 final size:205
Alignment explanation
Indices: 1380273--1380811 Score: 798
Period size: 212 Copynumber: 2.6 Consensus size: 205
1380263 TTAATACTCG
* * *
1380273 GTTTTATTAGGTATAAGTATTTAAAATCTTGTTTTTGTAATGTGATACATGCGTAAATATATATA
1 GTTTTATTAAGTATAAGTATTT-AAATTTTGTTTTTGTAATGTGATACATGCGT--GTATATATA
* *
1380338 TATAATCATATTAGTGAATTTGTTAATACATACTTCATCCAGGTAAAGTATGCATTATTAAAATT
63 TATAATCATATTAGTGAATCTGCTAATACATACTTCATCCAGGTAAAGTATGCATT-TTAAAATT
*
1380403 AAATTAAAATATTAAATCAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTAT
127 AAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTAT
1380468 TGTAATGAGATACAT
192 T-TAATGAGATACAT
1380483 GTTTTATTAAGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGATACATGCGTGTGTGTATATA
1 GTTTTATTAAGTATAAGTATTTAAA-TTTTGTTTTTGTAATGTGATACATGC----GTGTATATA
*
1380548 TATATACTCATATTAGTGAATCTGCTAATACATACTTCATCCAGGTAAAGTATGCATTGTTAAAA
61 TATATAATCATATTAGTGAATCTGCTAATACATACTTCATCCAGGTAAAGTATGCATT-TTAAAA
1380613 TTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATT
125 TTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATT
1380678 ATTTAATGAGATACAT
190 ATTTAATGAGATACAT
* * *
1380694 GTTTTATTATGTATAAGCATTT-AATTTT-TTTTTGTAATGTGATACATGC--GTAAATATATAT
1 GTTTTATTAAGTATAAGTATTTAAATTTTGTTTTTGTAATGTGATACATGCGTGTATATATATAT
* * * ** * *
1380755 AATCATATTAATAAATCTGCTAATACATATTTCATTTAGATAAAGTATTCATTTTAA
66 AATCATATTAGTGAATCTGCTAATACATACTTCATCCAGGTAAAGTATGCATTTTAA
1380812 TAACACATGA
Statistics
Matches: 305, Mismatches: 19, Indels: 19
0.89 0.06 0.06
Matches are distributed among these distances:
201 4 0.01
202 56 0.18
208 21 0.07
209 7 0.02
210 48 0.16
211 33 0.11
212 134 0.44
214 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41
Consensus pattern (205 bp):
GTTTTATTAAGTATAAGTATTTAAATTTTGTTTTTGTAATGTGATACATGCGTGTATATATATAT
AATCATATTAGTGAATCTGCTAATACATACTTCATCCAGGTAAAGTATGCATTTTAAAATTAAAT
TAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTTAA
TGAGATACAT
Found at i:1384213 original size:143 final size:141
Alignment explanation
Indices: 1383894--1384597 Score: 985
Period size: 143 Copynumber: 5.0 Consensus size: 141
1383884 CAAAAGTCTC
* *
1383894 GAAGAACGTGAATTTGAATTCAAATCTAGAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
1 GAAGAACG-CAATTTGAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
* * *
1383959 AATTCAAATTTCAACGTAAATTTGAAGAACTTTG-ATGAAAAATGAGGTAAAGAACTCAATTACA
65 AATTCAAATTTCCACGTAATTTTGAAGAACTTGGAATGAAAAATGAGGTAAAGAACTCAATTACA
1384023 CACAGATCAAAA
130 CACAGATCAAAA
* * * *
1384035 GAATAACGTAATTTTGAATTCAAATCTAAAATTACAAAAGCATTCACATTGAAATCGGACTCATG
1 GAAGAACGCAA-TTTGAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
*
1384100 AATTCAAATTTCCGCGTAATTTTGAAGAACTTGGAATGAAAAAATGAGGTAAAGAACTCAATTAC
65 AATTCAAATTTCCACGTAATTTTGAAGAACTTGGAATG-AAAAATGAGGTAAAGAACTCAATTAC
1384165 ACACAGATCAAAA
129 ACACAGATCAAAA
* *
1384178 GAAGAACGCAATTTCGAATTCAAATCTAAAATTACAAAAGCGTTCGCATTGGAACCGGACTCATG
1 GAAGAACGCAATTT-GAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
* * * * *
1384243 AATTCAAATTTCCACGTAAATTTGAAGAATTTTG-ATGAAAACTGAGGTAAAGCACTCAATTACA
65 AATTCAAATTTCCACGTAATTTTGAAGAACTTGGAATGAAAAATGAGGTAAAGAACTCAATTACA
1384307 CACAGATC--AA
130 CACAGATCAAAA
* * * *
1384317 -AAGAACGTAATTTTGAATTCAAATCTAAACTTACAAAAGCATTCGCATTGAAATCAGACTCATG
1 GAAGAACGCAA-TTTGAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
* * *
1384381 AATTCAAACTTCGACGTAATTTTGAAGAACTTGGAATGAAAAATGAGCTAAAGAACTCAAATTAC
65 AATTCAAATTTCCACGTAATTTTGAAGAACTTGGAATGAAAAATGAGGTAAAGAACTC-AATTAC
1384446 ACACAGATCAAAA
129 ACACAGATCAAAA
* ** * * * * *
1384459 CAAGAACGCGACCTTAAATTCAAATCTAAAGTTACAAATGCATTCGCATGGGAATCCGACTCATG
1 GAAGAACGC-AATTTGAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATG
1384524 AATTCAAATTTCCACGTAATTTTGAAGAACTAT--AATGAAAAATGAGGTAAAGAACTCAATT--
65 AATTCAAATTTCCACGTAATTTTGAAGAACT-TGGAATGAAAAATGAGGTAAAGAACTCAATTAC
1384585 ACACAGATCAAAA
129 ACACAGATCAAAA
1384598 AGGAGAGCAG
Statistics
Matches: 504, Mismatches: 47, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
138 83 0.16
139 38 0.08
140 17 0.03
141 124 0.25
142 34 0.07
143 206 0.41
144 2 0.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (141 bp):
GAAGAACGCAATTTGAATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAATCGGACTCATGA
ATTCAAATTTCCACGTAATTTTGAAGAACTTGGAATGAAAAATGAGGTAAAGAACTCAATTACAC
ACAGATCAAAA
Found at i:1384481 original size:281 final size:282
Alignment explanation
Indices: 1383910--1384597 Score: 1075
Period size: 281 Copynumber: 2.4 Consensus size: 282
1383900 CGTGAATTTG
* * *
1383910 AATTCAAATCTAGAATTACAAAAGCATTCGCATTGGAATCGGACTCATGAATTCAAATTTCAACG
1 AATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAACCGGACTCATGAATTCAAATTTCCACG
1383975 TAAATTTGAAGAACTTTGATGAAAAATGAGGTAAAGAACTCAATTACACACAGATCAAAAGAATA
66 TAAATTTGAAGAACTTTGATGAAAAATGAGGTAAAGAACTCAATTACACACAGATCAAAAG-A-A
*
1384040 ACGTAATTTTGAATTCAAATCTAAAATTACAAAAGCATTCACATTGAAATCGGACTCATGAATTC
129 ACGTAATTTTGAATTCAAATCTAAAATTACAAAAGCATTCACATTGAAATCAGACTCATGAATTC
* *
1384105 AAATTTCCGCGTAATTTTGAAGAACTTGGAATGAAAAAATGAGGTAAAGAACTCAATTACACACA
194 AAACTTCCGCGTAATTTTGAAGAACTTGGAATGAAAAAATGAGCTAAAGAACTCAATTACACACA
* * *
1384170 GATCAAAAGAAGAACGCAATTTCG
259 GATCAAAACAAGAACGCAACTTCA
*
1384194 AATTCAAATCTAAAATTACAAAAGCGTTCGCATTGGAACCGGACTCATGAATTCAAATTTCCACG
1 AATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAACCGGACTCATGAATTCAAATTTCCACG
* * *
1384259 TAAATTTGAAGAATTTTGATGAAAACTGAGGTAAAGCACTCAATTACACACAGATCAAAAG-AAC
66 TAAATTTGAAGAACTTTGATGAAAAATGAGGTAAAGAACTCAATTACACACAGATCAAAAGAAAC
* *
1384323 GTAATTTTGAATTCAAATCTAAACTTACAAAAGCATTCGCATTGAAATCAGACTCATGAATTCAA
131 GTAATTTTGAATTCAAATCTAAAATTACAAAAGCATTCACATTGAAATCAGACTCATGAATTCAA
1384388 ACTT-CGACGTAATTTTGAAGAACTTGGAATG-AAAAATGAGCTAAAGAACTCAAATTACACACA
196 ACTTCCG-CGTAATTTTGAAGAACTTGGAATGAAAAAATGAGCTAAAGAACTC-AATTACACACA
*
1384451 GATCAAAACAAGAACGCGACCTT-A
259 GATCAAAACAAGAACGC-AACTTCA
* * *
1384475 AATTCAAATCTAAAGTTACAAATGCATTCGCATGGGAATCC-GACTCATGAATTCAAATTTCCAC
1 AATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAA-CCGGACTCATGAATTCAAATTTCCAC
* * *
1384539 GTAATTTTGAAGAACTATAATGAAAAATGAGGTAAAGAACTCAATT--ACACAGATCAAAA
65 GTAAATTTGAAGAACTTTGATGAAAAATGAGGTAAAGAACTCAATTACACACAGATCAAAA
1384598 AGGAGAGCAG
Statistics
Matches: 374, Mismatches: 26, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
279 13 0.03
280 21 0.06
281 216 0.58
282 5 0.01
284 119 0.32
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.25
Consensus pattern (282 bp):
AATTCAAATCTAAAATTACAAAAGCATTCGCATTGGAACCGGACTCATGAATTCAAATTTCCACG
TAAATTTGAAGAACTTTGATGAAAAATGAGGTAAAGAACTCAATTACACACAGATCAAAAGAAAC
GTAATTTTGAATTCAAATCTAAAATTACAAAAGCATTCACATTGAAATCAGACTCATGAATTCAA
ACTTCCGCGTAATTTTGAAGAACTTGGAATGAAAAAATGAGCTAAAGAACTCAATTACACACAGA
TCAAAACAAGAACGCAACTTCA
Found at i:1386165 original size:16 final size:16
Alignment explanation
Indices: 1386119--1386168 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
1386109 TTTAGCATAA
1386119 TAATAAATTTAATTTTT
1 TAAT-AATTTAATTTTT
*
1386136 AAAT-ATTTATATTTTT
1 TAATAATTTA-ATTTTT
*
1386152 TATTAATTTAATTTTT
1 TAATAATTTAATTTTT
1386168 T
1 T
1386169 TGAGCTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 5 0.18
16 15 0.54
17 8 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TAATAATTTAATTTTT
Found at i:1398646 original size:27 final size:27
Alignment explanation
Indices: 1398614--1398670 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
1398604 TAAAATATTA
* *
1398614 ATATAATAGGTGGACTAACTTTTAAAT
1 ATATAATAAGAGGACTAACTTTTAAAT
1398641 ATATAATAAGAGGACTAACTTTTAAAT
1 ATATAATAAGAGGACTAACTTTTAAAT
1398668 ATA
1 ATA
1398671 AAAAAATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (27 bp):
ATATAATAAGAGGACTAACTTTTAAAT
Found at i:1398696 original size:34 final size:34
Alignment explanation
Indices: 1398655--1398722 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
1398645 AATAAGAGGA
1398655 CTAACTTTTAAATATAAAAAAATATATTTAAGTT
1 CTAACTTTTAAATATAAAAAAATATATTTAAGTT
1398689 CTAACTTTTAAATATAAAAAAATATATTTAAGTT
1 CTAACTTTTAAATATAAAAAAATATATTTAAGTT
1398723 TTCAAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (34 bp):
CTAACTTTTAAATATAAAAAAATATATTTAAGTT
Found at i:1398733 original size:32 final size:32
Alignment explanation
Indices: 1398663--1398735 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 32
1398653 GACTAACTTT
*
1398663 TAAATATAAAAAAATATATTTAAGTTCTAACTTT
1 TAAATATAAAAAAATATATTTAAGTTCTAA--TA
*
1398697 TAAATATAAAAAAATATATTTAAGTTTTCAA-A
1 TAAATATAAAAAAATATATTTAAGTTCT-AATA
1398729 TAAATAT
1 TAAATAT
1398736 TTTAGGATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
32 7 0.19
34 27 0.75
35 2 0.06
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (32 bp):
TAAATATAAAAAAATATATTTAAGTTCTAATA
Done.