Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 49 of 332
Found at i:14637877 original size:166 final size:166
Alignment explanation
Indices: 14637302--14637979 Score: 922
Period size: 166 Copynumber: 4.1 Consensus size: 166
14637292 GGTGTTACAT
* * *
14637302 AGCAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
* * * ** *
14637367 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTT--CGCAGATCTTATCTCTCTAAGCAGT
66 GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGCAGT
* *
14637430 AGCGGAGCAGATCGATGATGACTCGCCTTAATCCCTTA
131 AGCGGAGCAGATCG-T-AAGACTCGCCTTAATCCCCTA
*
14637468 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
* * * *
14637533 GACCTGCCTTAATCCCCTAGGCACTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGT
66 GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAA--T-CAGATCTTATCTCCCTAAGC
** * *
14637598 AGTAGTAGAGAAGATCG-AAGACTCACCTTAATCCCCTA
128 AGTAGCGGAGCAGATCGTAAGACTCGCCTTAATCCCCTA
*
14637636 AGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
* * *
14637701 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT-CA-CAGATCTTATCTCCCTAAGCAGT
66 GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGCAGT
*
14637764 AGCGGAGCAGATCGTCAACAACTCGCCTTAATCCCCTA
131 AGCGGAGCAGATCGT-AA-GACTCGCCTTAATCCCCTA
*
14637802 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
*
14637867 GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTCAAGATCTTA--TCCTTAAGC
66 GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAA--TC-AGATCTTATCTCCCTAAGC
* *
14637930 AGTAGCGGAGCAGATCG-AAGACGATGCACCTTAACCCCCTA
128 AGTAGCGGAGCAGATCGTAAGAC--T-CGCCTTAATCCCCTA
14637971 AGCAGTAGG
1 AGCAGTAGG
14637980 ATCCAAGATG
Statistics
Matches: 453, Mismatches: 43, Indels: 29
0.86 0.08 0.06
Matches are distributed among these distances:
163 32 0.07
165 2 0.00
166 212 0.47
167 4 0.01
168 116 0.26
169 47 0.10
170 1 0.00
171 39 0.09
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (166 bp):
AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
GACCCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGCAGT
AGCGGAGCAGATCGTAAGACTCGCCTTAATCCCCTA
Found at i:14637921 original size:334 final size:334
Alignment explanation
Indices: 14637302--14637979 Score: 1112
Period size: 334 Copynumber: 2.0 Consensus size: 334
14637292 GGTGTTACAT
* *
14637302 AGCAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
* * *
14637367 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTCGCAGATCTTATCTCTCTAAGCAGTAG
66 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAAGCAGTAG
* ** *
14637432 CGGAGCAGATCGATGATGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
131 CGGAGCAGATCGATAACAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
* *
14637497 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCTGCCTTAATCCCCTAGGCACTAGGG
196 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCGCCTTAATCCCCTAAGCACTAGGG
* *
14637562 TAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGTAGTAGTAGAGAAGATCGAAGAC-T-CACC
261 TAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTAGCAGAGAAGATCGAAGACATGCACC
*
14637625 TTAATCCCCTA
324 TTAACCCCCTA
* *
14637636 AGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
1 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
14637701 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAAGCAGTAG
66 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAAGCAGTAG
14637766 CGGAGCAGATCG-TCAACAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
131 CGGAGCAGATCGAT-AACAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
14637830 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCGCCTTAATCCCCTAAGCACTAGG
195 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCGCCTTAATCCCCTAAGCACTAGG
* * *
14637895 GTAACAGGTTAAATTT-CAAGATCTTATCCTTAAGCAGTAGCGGAGCAGATCGAAGACGATGCAC
260 GTAACAGGTTAAATTTGCAA-ATCTTATCCCTAAGCAGTAGCAGAGAAGATCGAAGAC-ATGCAC
14637959 CTTAACCCCCTA
323 CTTAACCCCCTA
14637971 AGCAGTAGG
1 AGCAGTAGG
14637980 ATCCAAGATG
Statistics
Matches: 319, Mismatches: 20, Indels: 9
0.92 0.06 0.03
Matches are distributed among these distances:
332 26 0.08
333 4 0.01
334 267 0.84
335 22 0.07
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (334 bp):
AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAAGCAGTAG
CGGAGCAGATCGATAACAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCGCCTTAATCCCCTAAGCACTAGGG
TAACAGGTTAAATTTGCAAATCTTATCCCTAAGCAGTAGCAGAGAAGATCGAAGACATGCACCTT
AACCCCCTA
Found at i:14638259 original size:87 final size:87
Alignment explanation
Indices: 14638156--14638655 Score: 332
Period size: 87 Copynumber: 5.7 Consensus size: 87
14638146 AGAGTAGATT
**
14638156 GAAGACATAGCAGATCTAACCTTCAGATGTTTTTACTGAAGCAGATCCAAGATGATTTGGCATTC
1 GAAGACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTC
14638221 TTGTGTTTACAAGGAGCAAATC
66 TTGTGTTTACAAGGAGCAAATC
* * * * *
14638243 GAAGACATAGCAGATCTGACTTTCAAATGTTTTCACATCAAAGCAGATCCAAGATAACAGATTTG
1 GAAGACATAGCAGATCTAACCTTCAGATGTTTACAC-T-GAAGCAGATCCAAGAT----GATTTG
* ** * * *
14638308 GC-GTCTCCAT-ATT-CGACGGAG---AGC
60 GCATTCT-TGTGTTTAC-AAGGAGCAAATC
* * *
14638332 -AGACACATAGCAGATCTAACCTTCAGATGTTTATACTG-ATCAGATCCAAGATGATTTGGCATT
1 GA-AGACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATT
*
14638395 CTTGTGTTTACAAGGAACAAATC
65 CTTGTGTTTACAAGGAGCAAATC
* * * * ** ** *
14638418 GAAGACATGGCAGATTTGACTTTTGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTG
1 GAAGACATAGCAGATCTAACCTTCAGATGTT-T-ACACTGAAGCAGATCCAAGAT----GATTTG
* * *
14638483 GCATCTCCAT-T-TTGAC--GGAG---AGC
60 GCAT-T-CTTGTGTTTACAAGGAGCAAATC
* *
14638506 -AGATACATAGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCAT
1 GA-AGACATAGCAGATCTAACCTTCAGATG-TTTACACTGAAGCAGATCCAAGATGATTTGGCAT
* * *
14638569 CCTTGTGTTCACAAGGAGCAAATT
64 TCTTGTGTTTACAAGGAGCAAATC
* * ** * * * *
14638593 GAAGACACAGCAGATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
14638656 CTCTGTATTG
Statistics
Matches: 309, Mismatches: 68, Indels: 72
0.69 0.15 0.16
Matches are distributed among these distances:
80 2 0.01
81 1 0.00
82 22 0.07
83 9 0.03
84 5 0.02
86 57 0.18
87 83 0.27
88 30 0.10
89 60 0.19
91 4 0.01
92 10 0.03
93 22 0.07
94 2 0.01
95 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (87 bp):
GAAGACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAGCAAATC
Found at i:14638392 original size:175 final size:175
Alignment explanation
Indices: 14638109--14638624 Score: 743
Period size: 175 Copynumber: 2.9 Consensus size: 175
14638099 CAGAGAACAA
*
14638109 ATCCAAGA-AACAGATTTGGCATCTCCATATTCGACGAAGAGTAG-ATTGAAGACATAGCAGATC
1 ATCCAAGATAACAGATTTGGCATCTCCATATTCGACG--GAG-AGCA--G-ACACATAGCAGATC
14638172 TAACCTTCAGATGTTTTTACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAG
60 TAACCTTCAGATG-TTTTACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAG
* *
14638237 CAAATCGAAGACATAGCAGATCTGACTTTCAAATGTTTTCACATCAAAGCAG
124 CAAATCGAAGACATAGCAGATTTGACTTTCAAATGTTTTCACACCAAAGCAG
*
14638289 ATCCAAGATAACAGATTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
1 ATCCAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
* *
14638354 TCAGATGTTTATACTG-ATCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATC
66 TCAGATGTTT-TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
* *** *
14638418 GAAGACATGGCAGATTTGACTTTTGGATGTTCTCACACCAAAGCAG
130 GAAGACATAGCAGATTTGACTTTCAAATGTTTTCACACCAAAGCAG
* * *
14638464 ATCCAAGATAACAGATCTGGCATCTCCAT-TTTGACGGAGAGCAGATACATAGCAGATCTAACCT
1 ATCCAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
* * *
14638528 TCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATT
66 TCAGATG-TTTTACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
* * *
14638593 GAAGACACAGCAGATTTGGCTTTCACATGTTT
130 GAAGACATAGCAGATTTGACTTTCAAATGTTT
14638625 ACGCTGAAGC
Statistics
Matches: 304, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
174 45 0.15
175 186 0.61
176 31 0.10
177 1 0.00
178 2 0.01
179 4 0.01
180 8 0.03
181 27 0.09
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ATCCAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
TCAGATGTTTTACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
AAGACATAGCAGATTTGACTTTCAAATGTTTTCACACCAAAGCAG
Found at i:14639079 original size:14 final size:15
Alignment explanation
Indices: 14639060--14639116 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
14639050 AATCTTTAAG
14639060 GATATG-CAATCTTA
1 GATATGACAATCTTA
14639074 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
14639091 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
14639110 GATATGA
1 GATATGA
14639117 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:14639101 original size:36 final size:38
Alignment explanation
Indices: 14639060--14639138 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
14639050 AATCTTTAAG
14639060 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
14639096 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
14639136 GAT
1 GAT
14639139 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:14639107 original size:19 final size:19
Alignment explanation
Indices: 14639060--14639138 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
14639050 AATCTTTAAG
14639060 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14639079 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14639096 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14639115 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
14639136 GAT
1 GAT
14639139 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14641234 original size:18 final size:18
Alignment explanation
Indices: 14641213--14641247 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14641203 TCATCATGAT
14641213 CAACTTCTAAAAATTCAC
1 CAACTTCTAAAAATTCAC
*
14641231 CAACTTCTAAAATTTCA
1 CAACTTCTAAAAATTCA
14641248 ATATAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (18 bp):
CAACTTCTAAAAATTCAC
Found at i:14641380 original size:14 final size:14
Alignment explanation
Indices: 14641361--14641396 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
14641351 AAATTTTCTC
14641361 CTTTCTTTTTGTTT
1 CTTTCTTTTTGTTT
*
14641375 CTTTCTTTTTTTTT
1 CTTTCTTTTTGTTT
14641389 CTTTCTTT
1 CTTTCTTT
14641397 CCCCTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.81
Consensus pattern (14 bp):
CTTTCTTTTTGTTT
Found at i:14641387 original size:18 final size:18
Alignment explanation
Indices: 14641361--14641397 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14641351 AAATTTTCTC
*
14641361 CTTTCTTTTTGTTTCTTT
1 CTTTCTTTTTCTTTCTTT
*
14641379 CTTTTTTTTTCTTTCTTT
1 CTTTCTTTTTCTTTCTTT
14641397 C
1 C
14641398 CCCTATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (18 bp):
CTTTCTTTTTCTTTCTTT
Found at i:14641482 original size:5 final size:5
Alignment explanation
Indices: 14641468--14641529 Score: 63
Period size: 5 Copynumber: 12.4 Consensus size: 5
14641458 TTATTTTTAT
* * * * *
14641468 TATAT TATAA TATAA GAT-A TATAT TTTACA TATAA TGTAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATA-A TATAA TATAA TATAA TATAA
14641518 TATAA TATAA TA
1 TATAA TATAA TA
14641530 ATATTTTCTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
4 3 0.07
5 40 0.87
6 3 0.07
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:14644388 original size:46 final size:46
Alignment explanation
Indices: 14644313--14644404 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
14644303 TAATTATCTT
* * *
14644313 TAAGTTTAAAACCATTTAAACTAGATCCAGCCCATTGTTTCCATCC
1 TAAGCTTAAAACCACTTAAAATAGATCCAGCCCATTGTTTCCATCC
* *
14644359 TAAGCTTAAAACCACTTAAAATTGGTCCAGCCCATTGTTTCCATCC
1 TAAGCTTAAAACCACTTAAAATAGATCCAGCCCATTGTTTCCATCC
14644405 CAAGATGCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (46 bp):
TAAGCTTAAAACCACTTAAAATAGATCCAGCCCATTGTTTCCATCC
Found at i:14647468 original size:19 final size:19
Alignment explanation
Indices: 14647423--14647472 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
14647413 TTTTTTAAAC
14647423 ATAAAAGTATGATTAAATT
1 ATAAAAGTATGATTAAATT
*
14647442 ATAGAAGTATGATTAAATT
1 ATAAAAGTATGATTAAATT
14647461 -TCAAAAGTATGA
1 AT-AAAAGTATGA
14647473 AAGAATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (19 bp):
ATAAAAGTATGATTAAATT
Found at i:14650854 original size:21 final size:20
Alignment explanation
Indices: 14650821--14650868 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
14650811 ATTGATTTCC
*
14650821 TATTATTTTATGTAAATATT
1 TATTATTTTATGTAAATATA
*
14650841 TATTATTATTATGTATATATA
1 TATTATT-TTATGTAAATATA
14650862 TATTATT
1 TATTATT
14650869 GATTTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
TATTATTTTATGTAAATATA
Found at i:14650897 original size:18 final size:19
Alignment explanation
Indices: 14650821--14650897 Score: 67
Period size: 18 Copynumber: 4.2 Consensus size: 19
14650811 ATTGATTTCC
*
14650821 TATTATT-TTATGTAAATATT
1 TATTATTATTATGT--ATATA
14650841 TATTATTATTATGTATATA
1 TATTATTATTATGTATATA
14650860 TA-TATTATTGAT-T-T-TA
1 TATTATTATT-ATGTATATA
*
14650876 TATTATT-TTGTGTATATA
1 TATTATTATTATGTATATA
14650894 TATT
1 TATT
14650898 TTCTTCTAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
15 1 0.02
16 7 0.14
17 6 0.12
18 14 0.29
19 8 0.16
20 7 0.14
21 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
TATTATTATTATGTATATA
Found at i:14651731 original size:28 final size:28
Alignment explanation
Indices: 14651695--14651750 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14651685 GTGAATACCC
14651695 TTTTCGTTGCTTTTGGAAATCATGAGGT
1 TTTTCGTTGCTTTTGGAAATCATGAGGT
14651723 TTTTCGTTGCTTTTGGAAATCATGAGGT
1 TTTTCGTTGCTTTTGGAAATCATGAGGT
14651751 GATCTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.46
Consensus pattern (28 bp):
TTTTCGTTGCTTTTGGAAATCATGAGGT
Found at i:14653163 original size:40 final size:40
Alignment explanation
Indices: 14653118--14653254 Score: 98
Period size: 40 Copynumber: 3.2 Consensus size: 40
14653108 TCAACCCTTA
14653118 CCCAAACCTCAAATACCCATCTAAAATAACCCAACAGAAG
1 CCCAAACCTCAAATACCCATCTAAAATAACCCAACAGAAG
* * * **
14653158 CCCAAACCCCTTATAA-AACCAT-TAACCCATTAAGCCCAAATATCACCAG
1 CCCAAA--CCTCA-AATACCCATCTAA---AATAA-CCC--A-A-CAGAAG
* *
14653207 CCCAAACCCCAAATACCCATCTAAACTAACCCAACAGAAG
1 CCCAAACCTCAAATACCCATCTAAAATAACCCAACAGAAG
14653247 CCCAAACC
1 CCCAAACC
14653255 CATTACAACC
Statistics
Matches: 73, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
40 18 0.25
41 4 0.05
42 10 0.14
43 2 0.03
44 7 0.10
45 7 0.10
46 2 0.03
47 9 0.12
48 4 0.05
49 10 0.14
ACGTcount: A:0.44, C:0.39, G:0.04, T:0.13
Consensus pattern (40 bp):
CCCAAACCTCAAATACCCATCTAAAATAACCCAACAGAAG
Found at i:14654815 original size:25 final size:26
Alignment explanation
Indices: 14654770--14654834 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
14654760 AATCTTGGTA
* * *
14654770 TATGTCATATTATATATGTATATATT
1 TATGTAATATTGTATAGGTATATATT
14654796 T-T-TAATATATGTATAGGTATATATT
1 TATGTAATAT-TGTATAGGTATATATT
14654821 TATGTAATATTGTA
1 TATGTAATATTGTA
14654835 ATAGTTTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.15
25 16 0.48
26 6 0.18
27 6 0.18
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (26 bp):
TATGTAATATTGTATAGGTATATATT
Found at i:14655208 original size:22 final size:22
Alignment explanation
Indices: 14655141--14655221 Score: 57
Period size: 22 Copynumber: 3.8 Consensus size: 22
14655131 TTATTCCTAT
*
14655141 TATATTTATTATTA-ATAT-TAG
1 TATATATATT-TTATATATATAG
* *
14655162 TACACATATTTTAT-TATACGT-G
1 TATATATATTTTATATATA--TAG
14655184 TATATATATTTTATATATATAG
1 TATATATATTTTATATATATAG
*
14655206 TAT-TAT-TTTCATATAT
1 TATATATATTTTATATAT
14655222 TATTATACTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
20 15 0.31
21 11 0.23
22 17 0.35
23 5 0.10
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (22 bp):
TATATATATTTTATATATATAG
Found at i:14655398 original size:13 final size:13
Alignment explanation
Indices: 14655380--14655404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14655370 TTCATTTTAA
14655380 ATATATTATGTAT
1 ATATATTATGTAT
14655393 ATATATTATGTA
1 ATATATTATGTA
14655405 CCTATATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
ATATATTATGTAT
Found at i:14655857 original size:30 final size:31
Alignment explanation
Indices: 14655823--14655892 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
14655813 ATTTTCTATT
* *
14655823 AAAATTCATTATC-AAATTAAAACAAA-AATA
1 AAAATT-AGTATCAAAACTAAAACAAATAATA
*
14655853 AAAATATAGTATCAAAACTAAAATAAATAATA
1 AAAAT-TAGTATCAAAACTAAAACAAATAATA
14655885 AAAATTAG
1 AAAATTAG
14655893 ATTAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 10 0.29
31 15 0.44
32 9 0.26
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.26
Consensus pattern (31 bp):
AAAATTAGTATCAAAACTAAAACAAATAATA
Found at i:14657818 original size:46 final size:46
Alignment explanation
Indices: 14657765--14658189 Score: 500
Period size: 46 Copynumber: 9.2 Consensus size: 46
14657755 ATAATCCATA
* *
14657765 ACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAAT
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
*
14657811 ACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * ** * *
14657857 ATTTCAATTAACAATATTTATAGCACTTCAATTTGCAACA-TTTAAGC
1 ACTTCAATTTACAGCATTTA-AACACTTCAATTTGCAGCACTTTAA-C
*
14657904 ACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * *
14657950 ATTTCAATTAACAACATTTAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
*
14657996 ACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * * * *
14658042 ATTTCAATTAACAACATTTAAACA-TCTCAATTTCCAGCAAC-TAAAC
1 ACTTCAATTTACAGCATTTAAACACT-TCAATTTGCAGC-ACTTTAAC
* * * * * *
14658088 ACTTCAATTTGCAGTACTTAAACACTCCAATTTACAGCACTCTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * * *
14658134 ACTTAAATTTGCAGCACTTT-AACAGTTCAATTTACAGCA-TTTAAAC
1 ACTTCAATTTACAGCA-TTTAAACACTTCAATTTGCAGCACTTT-AAC
14658180 ACTTCAATTT
1 ACTTCAATTT
14658190 GCAACACTTT
Statistics
Matches: 323, Mismatches: 47, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
45 5 0.02
46 275 0.85
47 43 0.13
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (46 bp):
ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
Found at i:14658203 original size:23 final size:23
Alignment explanation
Indices: 14657765--14658211 Score: 387
Period size: 23 Copynumber: 19.4 Consensus size: 23
14657755 ATAATCCATA
* *
14657765 ACTTCAATTTACAGCA-TTCAAAC
1 ACTTCAATTTGCAGCACTT-TAAC
*
14657788 ACTTCAATTTGCAGCACTTTAAT
1 ACTTCAATTTGCAGCACTTTAAC
* *
14657811 ACTTCAATTTACAGCA-TTAAAAC
1 ACTTCAATTTGCAGCACTT-TAAC
14657834 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
* ** **
14657857 ATTTCAATTAACAATA-TTTATAGC
1 ACTTCAATTTGCAGCACTTTA-A-C
*
14657881 ACTTCAATTTGCAACA-TTTAAGC
1 ACTTCAATTTGCAGCACTTTAA-C
* *
14657904 ACTTCAATTTACAGCA-TTCAAAC
1 ACTTCAATTTGCAGCACTT-TAAC
14657927 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
* ** *
14657950 ATTTCAATTAACAACA-TTTAAAC
1 ACTTCAATTTGCAGCACTTT-AAC
14657973 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
* *
14657996 ACTTCAATTTACAGCA-TTAAAAC
1 ACTTCAATTTGCAGCACTT-TAAC
14658019 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
* ** *
14658042 ATTTCAATTAACAACA-TTTAA-
1 ACTTCAATTTGCAGCACTTTAAC
* *
14658063 ACATCTCAATTTCCAGCAAC-TAAAC
1 AC-T-TCAATTTGCAGC-ACTTTAAC
* *
14658088 ACTTCAATTTGCAGTACTTAAAC
1 ACTTCAATTTGCAGCACTTTAAC
* * *
14658111 ACTCCAATTTACAGCACTCTAAC
1 ACTTCAATTTGCAGCACTTTAAC
*
14658134 ACTTAAATTTGCAGCACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
* *
14658157 AGTTCAATTTACAGCA-TTTAAAC
1 ACTTCAATTTGCAGCACTTT-AAC
*
14658180 ACTTCAATTTGCAACACTTTAAC
1 ACTTCAATTTGCAGCACTTTAAC
14658203 A-TCTCAATT
1 ACT-TCAATT
14658212 AACAACATTT
Statistics
Matches: 344, Mismatches: 60, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.00
22 23 0.07
23 280 0.81
24 38 0.11
25 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (23 bp):
ACTTCAATTTGCAGCACTTTAAC
Found at i:14658579 original size:2 final size:2
Alignment explanation
Indices: 14658572--14658598 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14658562 AACAGAAGGG
14658572 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
14658599 TATTAACATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14658615 original size:12 final size:12
Alignment explanation
Indices: 14658600--14658649 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
14658590 ACACACACAT
14658600 ATTAACATCTCA
1 ATTAACATCTCA
*
14658612 ATTAACA--ACA
1 ATTAACATCTCA
* *
14658622 TTTATACACCTCA
1 ATTA-ACATCTCA
14658635 ATTAACATCTCA
1 ATTAACATCTCA
14658647 ATT
1 ATT
14658650 TCCAGCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 5 0.17
11 3 0.10
12 17 0.57
13 5 0.17
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (12 bp):
ATTAACATCTCA
Found at i:14659882 original size:15 final size:15
Alignment explanation
Indices: 14659862--14659892 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14659852 CCTTGAATTA
14659862 GAAGAAAACCAGTAG
1 GAAGAAAACCAGTAG
14659877 GAAGAAAACCAGTAG
1 GAAGAAAACCAGTAG
14659892 G
1 G
14659893 TTACCTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.29, T:0.06
Consensus pattern (15 bp):
GAAGAAAACCAGTAG
Found at i:14661189 original size:7 final size:7
Alignment explanation
Indices: 14661177--14661278 Score: 55
Period size: 7 Copynumber: 14.3 Consensus size: 7
14661167 ACTAATTAAT
14661177 CTAAACC
1 CTAAACC
14661184 CTAAACC
1 CTAAACC
*
14661191 TCTTAACCC
1 -C-TAAACC
*
14661200 CT-ATCC
1 CTAAACC
*
14661206 CATAAACA
1 C-TAAACC
*
14661214 CTAAACT
1 CTAAACC
14661221 CTAAACC
1 CTAAACC
*
14661228 CTTAACC
1 CTAAACC
*
14661235 CCAAACC
1 CTAAACC
*
14661242 CTTACACC
1 C-TAAACC
* *
14661250 TTAAACT
1 CTAAACC
*
14661257 CT-AACA
1 CTAAACC
*
14661263 CTAACCC
1 CTAAACC
14661270 CTAAACC
1 CTAAACC
14661277 CT
1 CT
14661279 GAATCATAAT
Statistics
Matches: 70, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
6 9 0.13
7 47 0.67
8 9 0.13
9 5 0.07
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:14661255 original size:36 final size:36
Alignment explanation
Indices: 14661177--14661278 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 36
14661167 ACTAATTAAT
* * * *
14661177 CTAAACCCTAAACCTCTTAACCCCTATCCCATAAACA
1 CTAAACTCTAAACC-CTTAACCCCAAACCCTTAAACA
*
14661214 CTAAACTCTAAACCCTTAACCCCAAACCCTTACAC-
1 CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
*
14661249 CTTAAACTCT-AACAC-TAACCCCTAAACCCT
1 C-TAAACTCTAAACCCTTAACCCC-AAACCCT
14661279 GAATCATAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
34 7 0.12
35 12 0.21
36 25 0.44
37 13 0.23
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (36 bp):
CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
Found at i:14661367 original size:21 final size:21
Alignment explanation
Indices: 14661341--14661425 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
14661331 ACTCCTAAAC
*
14661341 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
14661362 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
14661387 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
14661408 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
14661426 AACTATAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:14661377 original size:46 final size:46
Alignment explanation
Indices: 14661325--14661414 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
14661315 CTTCAAATAC
*
14661325 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
14661371 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
14661415 CATAAACCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Found at i:14661394 original size:7 final size:7
Alignment explanation
Indices: 14661380--14661433 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
14661370 ATAGTTAACT
14661380 CATAAAC
1 CATAAAC
*
14661387 CTTAAAC
1 CATAAAC
*
14661394 CCTAAAC
1 CATAAAC
* *
14661401 CATATAT
1 CATAAAC
*
14661408 CTTAAAC
1 CATAAAC
14661415 CATAAAC
1 CATAAAC
14661422 CATAAAC
1 CATAAAC
*
14661429 TATAA
1 CATAA
14661434 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:14661643 original size:41 final size:39
Alignment explanation
Indices: 14661580--14661730 Score: 171
Period size: 39 Copynumber: 3.8 Consensus size: 39
14661570 GTTATATGAC
* *
14661580 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTAGCGGCGTTTTTGCTAAAA-CGCCGCTAATGCTCT-G
* *
14661620 TTTTTAGCGGCG-TTTTGCAAAAAGCGCCGCTATTGCTCTG
1 -TTTTAGCGGCGTTTTTGCTAAAA-CGCCGCTAATGCTCTG
* * *
14661660 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTATTGCTCTG
1 TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAATGCTCTG
* *
14661699 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTAA
1 TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAA
14661731 AGCCCTATTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 57 0.56
40 10 0.10
41 35 0.34
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.36
Consensus pattern (39 bp):
TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAATGCTCTG
Found at i:14661687 original size:39 final size:40
Alignment explanation
Indices: 14661598--14661729 Score: 189
Period size: 39 Copynumber: 3.3 Consensus size: 40
14661588 GCGTTTTACC
* * **
14661598 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCG-TTTTGCA
1 AAAAGCGCCGCTATTGCTCT-G-TTTTAGTGGCGTTTTTGGT
14661639 AAAAGCGCCGCTATTGCTCTGTTTTAGTGGCGTTTTTGGT
1 AAAAGCGCCGCTATTGCTCTGTTTTAGTGGCGTTTTTGGT
14661679 AAAA-CGCCGCTATTGCTCTGTTTTAGTGGCGTTTTTGGT
1 AAAAGCGCCGCTATTGCTCTGTTTTAGTGGCGTTTTTGGT
14661718 AAAA-CGCCGCTA
1 AAAAGCGCCGCTA
14661730 AAGCCCTATT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
39 57 0.66
40 10 0.12
41 19 0.22
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (40 bp):
AAAAGCGCCGCTATTGCTCTGTTTTAGTGGCGTTTTTGGT
Found at i:14664769 original size:26 final size:26
Alignment explanation
Indices: 14664740--14664795 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
14664730 TGATACAAAT
14664740 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14664766 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14664792 TGAT
1 TGAT
14664796 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14670044 original size:18 final size:18
Alignment explanation
Indices: 14670021--14670058 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14670011 AATATATATT
14670021 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
14670039 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
14670057 AA
1 AA
14670059 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:14670051 original size:13 final size:13
Alignment explanation
Indices: 14670035--14670059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14670025 CAAGTACCCA
14670035 ACCCAACCCAATT
1 ACCCAACCCAATT
14670048 ACCCAACCCAAT
1 ACCCAACCCAAT
14670060 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:14670097 original size:5 final size:6
Alignment explanation
Indices: 14670084--14670136 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
14670074 ATAATTTAAT
*
14670084 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
14670134 AAA
1 AAA
14670137 ATATAATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:14670178 original size:9 final size:9
Alignment explanation
Indices: 14670154--14670194 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
14670144 TTTATACAAA
14670154 TAATTCGGT
1 TAATTCGGT
* *
14670163 TAGTTCGGG
1 TAATTCGGT
*
14670172 TAATTCGAT
1 TAATTCGGT
14670181 TAATTCGGT
1 TAATTCGGT
14670190 TAATT
1 TAATT
14670195 TTATACTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:14673601 original size:21 final size:18
Alignment explanation
Indices: 14673567--14673606 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
14673557 TACTTAGGTA
14673567 TTATATTTTATATACATTT
1 TTATATTTTATATA-ATTT
14673586 TTATATGTTATATATAATTT
1 TTATAT-TT-TATATAATTT
14673606 T
1 T
14673607 AATGTTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 7 0.37
21 6 0.32
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TTATATTTTATATAATTT
Found at i:14673606 original size:19 final size:19
Alignment explanation
Indices: 14673567--14673612 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
14673557 TACTTAGGTA
* *
14673567 TTATATTTTATATACATTT
1 TTATATGTTATATACAATT
*
14673586 TTATATGTTATATATAATT
1 TTATATGTTATATACAATT
14673605 TTA-ATGTT
1 TTATATGTT
14673613 GTATTTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (19 bp):
TTATATGTTATATACAATT
Found at i:14673640 original size:21 final size:21
Alignment explanation
Indices: 14673616--14673699 Score: 71
Period size: 22 Copynumber: 3.9 Consensus size: 21
14673606 TAATGTTGTA
*
14673616 TTTTATATGTATCATATATAT
1 TTTTATATGTATTATATATAT
*
14673637 TTTTAATGTTGTATTAT-TATAT
1 TTTT-AT-ATGTATTATATATAT
* *
14673659 TTTAATATTATATTATATATAT
1 TTTTATA-TGTATTATATATAT
* *
14673681 TTTCATATTATATTATATA
1 TTTTATA-TGTATTATATA
14673700 CATGTATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
21 13 0.25
22 33 0.62
23 7 0.13
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTATATGTATTATATATAT
Found at i:14673641 original size:34 final size:32
Alignment explanation
Indices: 14673584--14673666 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 32
14673574 TTATATACAT
14673584 TTTTATATGTTATATATAATTTTAATGTTGTA
1 TTTTATATGTTATATATAATTTTAATGTTGTA
*
14673616 TTTTATATGTATCATATATATTTTTAATGTTGTA
1 TTTTATATGT-T-ATATATAATTTTAATGTTGTA
*
14673650 TTATTATATTTTA-ATAT
1 TT-TTATATGTTATATAT
14673667 TATATTATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 14 0.30
33 2 0.04
34 23 0.50
35 7 0.15
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.60
Consensus pattern (32 bp):
TTTTATATGTTATATATAATTTTAATGTTGTA
Found at i:14673662 original size:55 final size:53
Alignment explanation
Indices: 14673576--14673678 Score: 127
Period size: 55 Copynumber: 1.9 Consensus size: 53
14673566 ATTATATTTT
* * *
14673576 ATATACATTTTTATATGTTATATATAATTTTAATGTTGTATTTTATATGTATC
1 ATATACATTTTTATATGTTATATATAATTTTAATATTATATTATATATGTATC
* *
14673629 ATATATATTTTTA-ATGTTGTATTATTATATTTTAATATTATATTATATAT
1 ATATACATTTTTATATGTTATA-TA-TA-ATTTTAATATTATATTATATAT
14673679 ATTTTCATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 7 0.17
53 14 0.33
54 2 0.05
55 19 0.45
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (53 bp):
ATATACATTTTTATATGTTATATATAATTTTAATATTATATTATATATGTATC
Found at i:14673669 original size:13 final size:12
Alignment explanation
Indices: 14673651--14673699 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
14673641 AATGTTGTAT
14673651 TATTATATTTTAA
1 TATTATATTTT-A
14673664 TATTATA--TTA
1 TATTATATTTTA
14673674 TA-TATATTTTCA
1 TATTATATTTT-A
*
14673686 TATTATATTATA
1 TATTATATTTTA
14673698 TA
1 TA
14673700 CATGTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
9 4 0.13
10 3 0.10
11 4 0.13
12 6 0.19
13 14 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATATTTTA
Found at i:14673688 original size:22 final size:22
Alignment explanation
Indices: 14673629--14673699 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
14673619 TATATGTATC
* *
14673629 ATATATATTTTTAATGTTGTATT
1 ATATATA-TTTTAATATTATATT
14673652 AT-TATATTTTAATATTATATT
1 ATATATATTTTAATATTATATT
*
14673673 ATATATATTTTCATATTATATT
1 ATATATATTTTAATATTATATT
14673695 ATATA
1 ATATA
14673700 CATGTATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 15 0.34
22 27 0.61
23 2 0.05
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (22 bp):
ATATATATTTTAATATTATATT
Found at i:14673736 original size:26 final size:25
Alignment explanation
Indices: 14673654--14673755 Score: 79
Period size: 26 Copynumber: 4.1 Consensus size: 25
14673644 GTTGTATTAT
*
14673654 TATATTTTAATAT-TA-TAT-TATA
1 TATATTTTCATATATACTATATATA
* *
14673676 TATATTTTCATATTATATTATATACA
1 TATATTTTCATA-TATACTATATATA
* *
14673702 TGTATTTTTCATATATACTATCATGTA
1 TATA-TTTTCATATATACTAT-ATATA
*
14673729 TATATTTTGATAT-TACTAGT-TATA
1 TATATTTTCATATATACTA-TATATA
14673753 TAT
1 TAT
14673756 TACTTATATA
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
22 11 0.17
23 1 0.02
24 8 0.12
25 8 0.12
26 22 0.34
27 14 0.22
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATTTTCATATATACTATATATA
Found at i:14673785 original size:23 final size:23
Alignment explanation
Indices: 14673713--14673805 Score: 66
Period size: 23 Copynumber: 4.0 Consensus size: 23
14673703 GTATTTTTCA
* *
14673713 TATATACTATCATGTATATATTT
1 TATATATTACCATGTATATATTT
* *
14673736 T-GATATTACTA-GTTATATATTACT
1 TATATATTACCATG-TATATATT--T
*
14673760 TATATATTTCCATGTATATATTT
1 TATATATTACCATGTATATATTT
* *
14673783 TATAT-TGTCCCATGTACATATTT
1 TATATAT-TACCATGTATATATTT
14673806 ATGTAGTGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
21 1 0.02
22 15 0.27
23 21 0.38
24 2 0.04
25 15 0.27
26 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (23 bp):
TATATATTACCATGTATATATTT
Found at i:14674145 original size:21 final size:22
Alignment explanation
Indices: 14674120--14674167 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
14674110 CCCATATATC
*
14674120 ATTATATTATTTATTAT-ACTT
1 ATTATATTAGTTATTATAACTT
* *
14674141 ATTATTTTCGTTATTATAACTT
1 ATTATATTAGTTATTATAACTT
14674163 ATTAT
1 ATTAT
14674168 CTTTTTGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTATATTAGTTATTATAACTT
Found at i:14675546 original size:19 final size:20
Alignment explanation
Indices: 14675496--14675546 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
14675486 GTTAACTGAC
14675496 AGGTTAATTAGATCTTAATTA
1 AGGTTAATTAGA-CTTAATTA
*
14675517 A-GTAAATTTAG-CTTAATTA
1 AGGTTAA-TTAGACTTAATTA
14675536 AGGTTAATTAG
1 AGGTTAATTAG
14675547 GTATAAGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 13 0.50
20 8 0.31
21 5 0.19
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (20 bp):
AGGTTAATTAGACTTAATTA
Found at i:14675752 original size:17 final size:18
Alignment explanation
Indices: 14675711--14675753 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
14675701 TGTATTTACT
14675711 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
14675729 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
14675746 TATTATAT
1 TATTATAT
14675754 TATATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:14678110 original size:29 final size:31
Alignment explanation
Indices: 14678073--14678136 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 31
14678063 TAGAATGTTT
14678073 ATATGCAAGATAAACA-TTAA-ATTAAATTTA
1 ATATGCAAGATAAACACTTAATATTAAA-TTA
14678103 ATAT-CAAGATAAACACTTTAATATTAAATTA
1 ATATGCAAGATAAACAC-TTAATATTAAATTA
14678134 ATA
1 ATA
14678137 AAATATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 11 0.35
30 4 0.13
31 10 0.32
32 6 0.19
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (31 bp):
ATATGCAAGATAAACACTTAATATTAAATTA
Found at i:14678251 original size:126 final size:128
Alignment explanation
Indices: 14677987--14678318 Score: 431
Period size: 126 Copynumber: 2.6 Consensus size: 128
14677977 AGCTTAATCG
* * *
14677987 CTTTAATATTAAATTAATATAATATATATTAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 CTTTAATATTAAATTAATAAAATAT-TATTAAGATAAGTATTAAATTAAATTTAATATTAAA-C-
* * *
14678052 TATTAAAATAATAGAATGTTTATATGCAAGATAAACATTAAATTAAATTTAATATCAAGATAAAC
63 TATTAAAATAATACAATGTTAATATGCAAGATAAACATTAAATTAAATTAAATATCAAGATAAAC
14678117 A
128 A
*
14678118 CTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAATTTCATATTAAACTAT
1 CTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAATTTAATATTAAACTAT
* * * * * *
14678183 TAAGATAA-ACACT-TTAATAT-TAA-ATTAATATTAAGA-TAAGTATTAAATATTAAGATAAAC
66 TAAAATAATACAATGTTAATATGCAAGATAAACATTAA-ATTAA--ATTAAATATCAAGATAAAC
14678243 A
128 A
** *
14678244 CTTTAATATTAAATTAATAAAATCCTATTAAGATAAGTATTAAATTAAATTTTATATTAAACTAT
1 CTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAATTTAATATTAAACTAT
14678309 TAAAATAATA
66 TAAAATAATA
14678319 TTATTTTTGG
Statistics
Matches: 180, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
124 12 0.07
125 3 0.02
126 93 0.52
127 4 0.02
128 10 0.06
129 1 0.01
130 33 0.18
131 24 0.13
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (128 bp):
CTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAATTTAATATTAAACTAT
TAAAATAATACAATGTTAATATGCAAGATAAACATTAAATTAAATTAAATATCAAGATAAACA
Found at i:14680367 original size:21 final size:21
Alignment explanation
Indices: 14680332--14680427 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
14680322 AGGCACTTTA
14680332 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
14680355 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
14680376 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
14680397 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
14680418 TGTGTCGTAT
1 TGTGTCGTAT
14680428 ACTGATCAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.87
23 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:14680402 original size:42 final size:42
Alignment explanation
Indices: 14680319--14680427 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
14680309 GGCTTTATCG
* *
14680319 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
14680363 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
14680405 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
14680428 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.67
44 19 0.33
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:14685539 original size:15 final size:15
Alignment explanation
Indices: 14685519--14685561 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
14685509 AAAAGGAAGC
14685519 AAAAGAGAAAAAAAA
1 AAAAGAGAAAAAAAA
14685534 AAAAGA-AAAAAAAA
1 AAAAGAGAAAAAAAA
14685548 AGAAAGAGAAAAAA
1 A-AAAGAGAAAAAA
14685562 CCTCTTCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.35
15 11 0.42
16 6 0.23
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAGAGAAAAAAAA
Found at i:14685540 original size:13 final size:13
Alignment explanation
Indices: 14685519--14685548 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14685509 AAAAGGAAGC
*
14685519 AAAAGAGAAAAAA
1 AAAAAAGAAAAAA
14685532 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
14685545 AAAA
1 AAAA
14685549 GAAAGAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAA
Found at i:14685542 original size:11 final size:11
Alignment explanation
Indices: 14685528--14685552 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14685518 CAAAAGAGAA
14685528 AAAAAAAAAAG
1 AAAAAAAAAAG
14685539 AAAAAAAAAAG
1 AAAAAAAAAAG
14685550 AAA
1 AAA
14685553 GAGAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:14685546 original size:17 final size:17
Alignment explanation
Indices: 14685526--14685561 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14685516 AGCAAAAGAG
14685526 AAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAGAAAA
* *
14685543 AAAAAAGAAAGAGAAAA
1 AAAAAAAAAAAAGAAAA
14685560 AA
1 AA
14685562 CCTCTTCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAGAAAA
Found at i:14702048 original size:23 final size:23
Alignment explanation
Indices: 14702018--14702063 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14702008 AAACTTGTTC
14702018 ACAACCAGACATATTGACATGAA
1 ACAACCAGACATATTGACATGAA
14702041 ACAACCAGACATATTGACATGAA
1 ACAACCAGACATATTGACATGAA
14702064 CTTAAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (23 bp):
ACAACCAGACATATTGACATGAA
Found at i:14714277 original size:30 final size:30
Alignment explanation
Indices: 14714241--14714302 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
14714231 ACTTATTTTA
14714241 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
14714271 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
14714301 TT
1 TT
14714303 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:14715185 original size:30 final size:30
Alignment explanation
Indices: 14715149--14715209 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
14715139 CAACTTAACA
*
14715149 AACAAATGCCTTTAAAATAATAATAAAATT
1 AACAAATGCCTTTAAAATAATAACAAAATT
14715179 AACAAATGCCTTTAAAATAATAACAAAATT
1 AACAAATGCCTTTAAAATAATAACAAAATT
14715209 A
1 A
14715210 GCAATAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.28
Consensus pattern (30 bp):
AACAAATGCCTTTAAAATAATAACAAAATT
Found at i:14715298 original size:22 final size:22
Alignment explanation
Indices: 14715251--14715300 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14715241 CAATTACAAC
* *
14715251 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAATAGG
*
14715273 AAAATGGTAGCAAAAT-ATAGAG
1 AAAATAGTAGCAAAATAATAG-G
14715295 AAAATA
1 AAAATA
14715301 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.58, C:0.06, G:0.16, T:0.20
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAATAGG
Found at i:14716651 original size:10 final size:10
Alignment explanation
Indices: 14716636--14716694 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
14716626 AATTTTAGCT
14716636 TTTATCTTTA
1 TTTATCTTTA
*
14716646 TTTATCCTTA
1 TTTATCTTTA
14716656 TTTATCTTTA
1 TTTATCTTTA
*
14716666 ATTATCTTTA
1 TTTATCTTTA
14716676 TTTAT-TTGTA
1 TTTATCTT-TA
14716686 TTTATCTTT
1 TTTATCTTT
14716695 TGGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:14720393 original size:5 final size:5
Alignment explanation
Indices: 14720383--14720416 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
14720373 TTTTCTTAAT
14720383 TTTTA TTTTA TTATCTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TT-T-TA TTTTA TTTTA TTTTA TT
14720417 ATTTATTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 21 0.78
6 2 0.07
7 4 0.15
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:14720421 original size:17 final size:17
Alignment explanation
Indices: 14720365--14720423 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14720355 ATTCTTATTT
*
14720365 TTATTTATTTT-TCTTAA
1 TTATTTATTTTAT-TTTA
14720382 TT-TTTATTTTA--TTA
1 TTATTTATTTTATTTTA
14720396 TCTATTTTATTTTATTTTA
1 T-TA-TTTATTTTATTTTA
14720415 TTATTTATT
1 TTATTTATT
14720424 ACTTTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
14 3 0.09
15 1 0.03
16 8 0.23
17 17 0.49
18 2 0.06
19 4 0.11
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
TTATTTATTTTATTTTA
Found at i:14721325 original size:3 final size:3
Alignment explanation
Indices: 14721319--14721381 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
14721309 GCAGCAGCAG
14721319 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
14721367 CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA
14721382 TAAAAGAAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:14721409 original size:14 final size:14
Alignment explanation
Indices: 14721383--14721424 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
14721373 CAACAACAAT
14721383 AAAAGAAA-AAAAA
1 AAAAGAAAGAAAAA
*
14721396 AGAGAGAAAGAAAAA
1 A-AAAGAAAGAAAAA
14721411 AAAAG-AAGAAAAA
1 AAAAGAAAGAAAAA
14721424 A
1 A
14721425 TGATGTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 10 0.40
14 9 0.36
15 6 0.24
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAAAA
Found at i:14721420 original size:17 final size:18
Alignment explanation
Indices: 14721384--14721421 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
14721374 AACAACAATA
14721384 AAAGAAAAAAAAAGAGAG
1 AAAGAAAAAAAAAGAGAG
14721402 AAAGAAAAAAAAAGA-AG
1 AAAGAAAAAAAAAGAGAG
14721419 AAA
1 AAA
14721422 AAATGATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAAAAAGAGAG
Found at i:14722062 original size:22 final size:22
Alignment explanation
Indices: 14722025--14722075 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
14722015 TATTATTTAG
* *
14722025 ATTTAATTTTAGCTTTTATTTTT
1 ATTT-ATTCTAGCTTTTATCTTT
14722048 ATTTATTCTAGCTTTTATCTTT
1 ATTTATTCTAGCTTTTATCTTT
14722070 ATTTAT
1 ATTTAT
14722076 CCTTATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.67
Consensus pattern (22 bp):
ATTTATTCTAGCTTTTATCTTT
Found at i:14722113 original size:30 final size:30
Alignment explanation
Indices: 14722062--14722119 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14722052 ATTCTAGCTT
* *
14722062 TTATCTTTATTTATCCTTATTTTTCTTTAA
1 TTATCTTTAATTATCCTTATTTATCTTTAA
*
14722092 TTATCTTTAATTAT-TTGTATTTATCTTT
1 TTATCTTTAATTATCCT-TATTTATCTTT
14722120 TGAAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (30 bp):
TTATCTTTAATTATCCTTATTTATCTTTAA
Found at i:14732832 original size:18 final size:17
Alignment explanation
Indices: 14732785--14732840 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
14732775 CCAAATTCCT
* * *
14732785 ACACGCTCGTGTAGTCC
1 ACACGCCCGTGTGGCCC
*
14732802 ACACGCTCGTGTGGCCC
1 ACACGCCCGTGTGGCCC
14732819 ACACGGCCCGTGTGGCCC
1 ACAC-GCCCGTGTGGCCC
14732837 ACAC
1 ACAC
14732841 AGTCCAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
17 19 0.54
18 16 0.46
ACGTcount: A:0.16, C:0.41, G:0.27, T:0.16
Consensus pattern (17 bp):
ACACGCCCGTGTGGCCC
Found at i:14734808 original size:62 final size:62
Alignment explanation
Indices: 14734738--14734863 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
14734728 CCTCTAGCCC
* *
14734738 AGCCAAGACTGAACCATCATCAAGCAATGTT-AAACGAGGATCCATGGCCCTTAATGCAAACA
1 AGCCAAGACTGAACCATCATCAAGCAAT-TTCAAACGAGCATCCATAGCCCTTAATGCAAACA
14734800 AGCCAAGACTGAACCATCATCAAGCAATTTCAAACGAGCATCCATAGCCCTTAATGCAAACA
1 AGCCAAGACTGAACCATCATCAAGCAATTTCAAACGAGCATCCATAGCCCTTAATGCAAACA
14734862 AG
1 AG
14734864 GATTTTCTGC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 2 0.03
62 59 0.97
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.17
Consensus pattern (62 bp):
AGCCAAGACTGAACCATCATCAAGCAATTTCAAACGAGCATCCATAGCCCTTAATGCAAACA
Found at i:14744089 original size:22 final size:22
Alignment explanation
Indices: 14744063--14744108 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
14744053 TTAAAACAAC
14744063 AACTAAGGTTTTAAGTGGGAAA
1 AACTAAGGTTTTAAGTGGGAAA
*
14744085 AACTAGGGTTTTAAGTGGGAAA
1 AACTAAGGTTTTAAGTGGGAAA
14744107 AA
1 AA
14744109 GACCTTGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.28, T:0.26
Consensus pattern (22 bp):
AACTAAGGTTTTAAGTGGGAAA
Found at i:14746115 original size:13 final size:13
Alignment explanation
Indices: 14746097--14746124 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14746087 TAGAAATTGG
14746097 ACAACATAAATCT
1 ACAACATAAATCT
14746110 ACAACATAAATCT
1 ACAACATAAATCT
14746123 AC
1 AC
14746125 CAGATTAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.25, G:0.00, T:0.21
Consensus pattern (13 bp):
ACAACATAAATCT
Found at i:14749680 original size:8 final size:7
Alignment explanation
Indices: 14749660--14749708 Score: 50
Period size: 8 Copynumber: 7.0 Consensus size: 7
14749650 TAAATAAGAT
14749660 TAATAAA
1 TAATAAA
14749667 -AATAAA
1 TAATAAA
14749673 TGAATAAA
1 T-AATAAA
14749681 -AATAAA
1 TAATAAA
14749687 TAAATAAA
1 T-AATAAA
14749695 TAA-AAA
1 TAATAAA
14749701 CTAATAAA
1 -TAATAAA
14749709 ATCTAAAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
6 15 0.42
7 5 0.14
8 16 0.44
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (7 bp):
TAATAAA
Found at i:14749680 original size:14 final size:14
Alignment explanation
Indices: 14749637--14749694 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
14749627 CTGCTATGGG
*
14749637 AAAA-AAATAAACA
1 AAAATAAATAAATA
* *
14749650 TAAATAAGATTAATA
1 AAAATAA-ATAAATA
*
14749665 AAAATAAATGAATA
1 AAAATAAATAAATA
14749679 AAAATAAATAAATA
1 AAAATAAATAAATA
14749693 AA
1 AA
14749695 TAAAAACTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
13 3 0.08
14 23 0.62
15 11 0.30
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (14 bp):
AAAATAAATAAATA
Found at i:14749708 original size:18 final size:18
Alignment explanation
Indices: 14749641--14749698 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
14749631 TATGGGAAAA
*
14749641 AAATAAACATAAATAAGAT
1 AAATAAAAATAAATAA-AT
* *
14749660 TAATAAAAATAAATGAAT
1 AAATAAAAATAAATAAAT
14749678 AAA-AATAAATAAATAAAT
1 AAATAA-AAATAAATAAAT
14749696 AAA
1 AAA
14749699 AACTAATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 2 0.06
18 18 0.55
19 13 0.39
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.22
Consensus pattern (18 bp):
AAATAAAAATAAATAAAT
Found at i:14753253 original size:10 final size:10
Alignment explanation
Indices: 14753238--14753262 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14753228 ATTATTAGTT
14753238 TTATTTATTA
1 TTATTTATTA
14753248 TTATTTATTA
1 TTATTTATTA
14753258 TTATT
1 TTATT
14753263 GTTATTGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTATTA
Found at i:14753342 original size:14 final size:14
Alignment explanation
Indices: 14753323--14753349 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14753313 TGGTTTTTGC
14753323 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
14753337 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
14753350 CTGTTGGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:14753781 original size:13 final size:13
Alignment explanation
Indices: 14753765--14753790 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14753755 GTACCACATA
14753765 GCCTGGCCACACG
1 GCCTGGCCACACG
14753778 GCCTGGCCACACG
1 GCCTGGCCACACG
14753791 ACCGTGTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.31, T:0.08
Consensus pattern (13 bp):
GCCTGGCCACACG
Found at i:14756495 original size:68 final size:68
Alignment explanation
Indices: 14756382--14756657 Score: 299
Period size: 68 Copynumber: 4.1 Consensus size: 68
14756372 TGGTTCACCA
* * * * * * *
14756382 TCCTGGCAAACTTCATTTGTTGCCATAGCCTATCCATGGTCTTACACAATATGATCCTATGTTTA
1 TCCTGGCAGACTCCATATGTTGCCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTA
14756447 CTG
66 CTG
* **
14756450 TCTTGGCAGACTCCATATGTTTTCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTA
1 TCCTGGCAGACTCCATATGTTGCCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTA
*
14756515 TTG
66 CTG
* * * * *
14756518 TCCTAGCGGACTCTATATGTTGCCATAACCTA---ATGGTCTTACACAATATGATCCCATGTTTA
1 TCCTGGCAGACTCCATATGTTGCCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTA
*
14756580 CTA
66 CTG
* * * **
14756583 TCCTGG-AGGACTTCATATATTGCCATAGCCCAGCTAAGGTCTTACACAATATGATCTTATGTTT
1 TCCTGGCA-GACTCCATATGTTGCCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTT
*
14756647 ATTG
65 ACTG
*
14756651 TCTTGGC
1 TCCTGGC
14756658 GGAATTTTGA
Statistics
Matches: 169, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
65 55 0.33
68 114 0.67
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (68 bp):
TCCTGGCAGACTCCATATGTTGCCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTA
CTG
Found at i:14756660 original size:133 final size:134
Alignment explanation
Indices: 14756399--14756652 Score: 368
Period size: 133 Copynumber: 1.9 Consensus size: 134
14756389 AAACTTCATT
* * * *
14756399 TGTTGCCATAGCCTATCCATGGTCTTACACAATATGATCCTATGTTTACTGTCTTGGCAGACTCC
1 TGTTGCCATAACCTA--CATGGTCTTACACAATATGATCCCATGTTTACTATCCTGGCAGACTCC
* ** *
14756464 ATATGTTTTCATAGCCCAGCTATGGTCTTACACAATATGATCCCATGTTTATTGTCCTAGCGGAC
64 ATATATTGCCATAGCCCAGCTAAGGTCTTACACAATATGATCCCATGTTTATTGTCCTAGCGGAC
14756529 TCTATA
129 TCTATA
*
14756535 TGTTGCCATAACCTA-ATGGTCTTACACAATATGATCCCATGTTTACTATCCTGG-AGGACTTCA
1 TGTTGCCATAACCTACATGGTCTTACACAATATGATCCCATGTTTACTATCCTGGCA-GACTCCA
**
14756598 TATATTGCCATAGCCCAGCTAAGGTCTTACACAATATGATCTTATGTTTATTGTC
65 TATATTGCCATAGCCCAGCTAAGGTCTTACACAATATGATCCCATGTTTATTGTC
14756653 TTGGCGGAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
132 1 0.01
133 91 0.86
136 14 0.13
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (134 bp):
TGTTGCCATAACCTACATGGTCTTACACAATATGATCCCATGTTTACTATCCTGGCAGACTCCAT
ATATTGCCATAGCCCAGCTAAGGTCTTACACAATATGATCCCATGTTTATTGTCCTAGCGGACTC
TATA
Found at i:14757908 original size:5 final size:5
Alignment explanation
Indices: 14757895--14757931 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
14757885 CATAGAGTGT
*
14757895 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
14757932 GAAAAGTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:14758887 original size:48 final size:48
Alignment explanation
Indices: 14758812--14758903 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
14758802 AGGGTTATAA
* *
14758812 GTGATTCCATGTAAGACCATGTTTAGGACATGGCATTGGCATCGTCAC
1 GTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGTCAC
14758860 GTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
1 GTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
14758904 ATATGAGACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (48 bp):
GTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGTCAC
Found at i:14761699 original size:3 final size:3
Alignment explanation
Indices: 14761691--14761715 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14761681 CTTTATTTAT
14761691 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
14761716 GAGTCCTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14762514 original size:5 final size:5
Alignment explanation
Indices: 14762504--14762542 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
14762494 TAGTTTATAA
* *
14762504 AAATT AAATT AAATT AAATT AAAAT AACATA AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AA-ATT AAATT AAA
14762543 GTTCTAACGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 26 0.90
6 3 0.10
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (5 bp):
AAATT
Found at i:14763884 original size:20 final size:21
Alignment explanation
Indices: 14763856--14763897 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
14763846 TAATATCACA
14763856 TCAATAATTTT-ATCTTGAATT
1 TCAATAATTTTCAT-TTGAATT
14763877 TCAA-AATTTTCATTTGAATT
1 TCAATAATTTTCATTTGAATT
14763897 T
1 T
14763898 AATTTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (21 bp):
TCAATAATTTTCATTTGAATT
Found at i:14766165 original size:17 final size:17
Alignment explanation
Indices: 14766145--14766181 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14766135 AATAAAAGTA
*
14766145 TAAAAATTCTAAAATTT
1 TAAAAATACTAAAATTT
*
14766162 TAAAAATACTAATATTT
1 TAAAAATACTAAAATTT
14766179 TAA
1 TAA
14766182 GCAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAAAATACTAAAATTT
Found at i:14767058 original size:87 final size:87
Alignment explanation
Indices: 14766912--14767085 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
14766902 ACGTAAAGCG
*
14766912 CATTACCTTACATACGTATATCTCAAACAGAGTATAAGGTTTTTATGATCGGGAATGAAGTTTTT
1 CATTACCTTACATACGTATATCTCAAACAGAGAATAAGGTTTTTATGATCGGGAATGAAGTTTTT
14766977 TGCGAAAAGAAATGTGGGACTT
66 TGCGAAAAGAAATGTGGGACTT
*
14766999 CATTACCTTACATACGTATATCTCAAACAGAGAATAGGGTTTTTATGATCGGGAATGAAGTTTTT
1 CATTACCTTACATACGTATATCTCAAACAGAGAATAAGGTTTTTATGATCGGGAATGAAGTTTTT
14767064 TGCGAAAAGAAATGTGGGACTT
66 TGCGAAAAGAAATGTGGGACTT
14767086 ACTCGTTGTT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (87 bp):
CATTACCTTACATACGTATATCTCAAACAGAGAATAAGGTTTTTATGATCGGGAATGAAGTTTTT
TGCGAAAAGAAATGTGGGACTT
Found at i:14774947 original size:27 final size:27
Alignment explanation
Indices: 14774907--14775018 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
14774897 AGGAAGCGTC
*
14774907 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
14774934 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
14774961 CTGGTGGCTCTGCCACGACTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
14774989 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
14775015 CTGG
1 CTGG
14775019 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 46 0.65
28 18 0.25
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:14775013 original size:54 final size:54
Alignment explanation
Indices: 14774907--14775018 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
14774897 AGGAAGCGTC
* * *
14774907 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
14774961 CTGGTGGCTCTGCCACGACTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAACTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
14775015 CTGG
1 CTGG
14775019 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:14782283 original size:20 final size:20
Alignment explanation
Indices: 14782231--14782287 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
14782221 GCCAATTTGA
*
14782231 TATCTATACTTTACACAAGG
1 TATCTATACTTTTCACAAGG
14782251 TATCTATACTTTTCACCAA-G
1 TATCTATACTTTTCA-CAAGG
14782271 TATCTATACTTTT-ACAA
1 TATCTATACTTTTCACAA
14782288 AATATACTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 3 0.09
19 1 0.03
20 28 0.80
21 3 0.09
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (20 bp):
TATCTATACTTTTCACAAGG
Found at i:14783144 original size:32 final size:32
Alignment explanation
Indices: 14783105--14783170 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
14783095 GGCACCATTC
*
14783105 AAAAACAAACCAATCACCAAATCAACGCTTAA
1 AAAAACAAACCAATCACCAAATCAACACTTAA
14783137 AAAAACAAACCAATCACCAAATCAACACTTAA
1 AAAAACAAACCAATCACCAAATCAACACTTAA
14783169 AA
1 AA
14783171 CCTTATTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.59, C:0.27, G:0.02, T:0.12
Consensus pattern (32 bp):
AAAAACAAACCAATCACCAAATCAACACTTAA
Found at i:14784128 original size:20 final size:19
Alignment explanation
Indices: 14784103--14784168 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
14784093 GTCCAGTTAG
*
14784103 GGGCACTGAAGTGCGAACAA
1 GGGCACAGAAGTGC-AACAA
* *
14784123 GGGCACAGACGTGCAAAAA
1 GGGCACAGAAGTGCAACAA
* * *
14784142 GGACACCGAAGTGCAAACAG
1 GGGCACAGAAGTGC-AACAA
14784162 GGGCACA
1 GGGCACA
14784169 AATCTGTGTT
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
19 15 0.43
20 20 0.57
ACGTcount: A:0.38, C:0.23, G:0.33, T:0.06
Consensus pattern (19 bp):
GGGCACAGAAGTGCAACAA
Found at i:14784155 original size:19 final size:19
Alignment explanation
Indices: 14784110--14784158 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
14784100 TAGGGGCACT
* *
14784110 GAAGTGCGAACAAGGGCACA
1 GAAGTGC-AAAAAGGACACA
* *
14784130 GACGTGCAAAAAGGACACC
1 GAAGTGCAAAAAGGACACA
14784149 GAAGTGCAAA
1 GAAGTGCAAA
14784159 CAGGGGCACA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.43, C:0.20, G:0.31, T:0.06
Consensus pattern (19 bp):
GAAGTGCAAAAAGGACACA
Found at i:14785815 original size:23 final size:23
Alignment explanation
Indices: 14785772--14785815 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
14785762 TTATTCGTTC
* *
14785772 AAATAACATAAATTACCATATCA
1 AAATAAAATAAATTACAATATCA
14785795 AAATAAAATATAA-TACAATAT
1 AAATAAAATA-AATTACAATAT
14785816 TTGACTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.27
Consensus pattern (23 bp):
AAATAAAATAAATTACAATATCA
Found at i:14796415 original size:19 final size:18
Alignment explanation
Indices: 14796391--14796439 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
14796381 TATGTATAAT
14796391 ATATAAATAATTAATAAAG
1 ATATAAATAATTAA-AAAG
* * *
14796410 ATATAATACAAGTAAAAAT
1 ATATAA-ATAATTAAAAAG
14796429 ATATAAATAAT
1 ATATAAATAAT
14796440 AATGTAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 3 0.12
19 15 0.62
20 6 0.25
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATTAAAAAG
Found at i:14796430 original size:38 final size:36
Alignment explanation
Indices: 14796388--14796487 Score: 105
Period size: 38 Copynumber: 2.6 Consensus size: 36
14796378 ATATATGTAT
14796388 AATATATAAATAATTAATAAAGAT-ATAATACAAGTAAA
1 AATATATAAATAA-TAATAAA-ATAATAATA-AAGTAAA
**
14796426 AATATATAAATAATAATGTAAAATAATAATAATTTAAA
1 AATATATAAATAATAA--TAAAATAATAATAAAGTAAA
14796464 AATATAT-AATAAATAATAATAATA
1 AATATATAAAT-AATAATAA-AATA
14796488 TGAAATAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
36 3 0.05
37 10 0.18
38 32 0.58
39 10 0.18
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (36 bp):
AATATATAAATAATAATAAAATAATAATAAAGTAAA
Found at i:14796434 original size:45 final size:43
Alignment explanation
Indices: 14796333--14796438 Score: 99
Period size: 45 Copynumber: 2.4 Consensus size: 43
14796323 AATAGTATAA
* *
14796333 AAAAATGACATAATATAAAATAATTATAATATATAATAGGAAAGT
1 AAAAAT-ATATAATATAAAATAATTATAAGATATAATA-GAAAGT
* * * *
14796378 ATATATGTATAATATATAAATAATTAATAAAGATATAATA-CAAGT
1 AAAAATATATAATATA-AAATAATT-AT-AAGATATAATAGAAAGT
14796423 AAAAATATATAA-ATAA
1 AAAAATATATAATATAA
14796439 TAATGTAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.02
44 11 0.22
45 25 0.51
46 2 0.04
47 10 0.20
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (43 bp):
AAAAATATATAATATAAAATAATTATAAGATATAATAGAAAGT
Found at i:14796455 original size:16 final size:17
Alignment explanation
Indices: 14796434--14796475 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
14796424 AAAATATATA
14796434 AATAATAATGT-AAAAT
1 AATAATAATGTAAAAAT
*
14796450 AATAATAATTTAAAAAT
1 AATAATAATGTAAAAAT
14796467 ATATAATAA
1 A-ATAATAA
14796476 ATAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.43
17 6 0.26
18 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AATAATAATGTAAAAAT
Found at i:14796495 original size:16 final size:15
Alignment explanation
Indices: 14796429--14796497 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 15
14796419 AAGTAAAAAT
14796429 ATATAAATAATAAT-
1 ATATAAATAATAATA
*
14796443 GTA-AAATAATAATA
1 ATATAAATAATAATA
*
14796457 ATTTAAA-AAT-AT-
1 ATATAAATAATAATA
14796469 ATAATAAATAATAATA
1 AT-ATAAATAATAATA
14796485 ATATGAAATAATA
1 ATAT-AAATAATA
14796498 TATGGTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 2 0.05
13 16 0.36
14 9 0.20
15 7 0.16
16 10 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATAAATAATAATA
Found at i:14799612 original size:14 final size:15
Alignment explanation
Indices: 14799595--14799632 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
14799585 TTTAAAAAAA
14799595 TTAATATAT-ATTTT
1 TTAATATATCATTTT
*
14799609 TTAATATTTCATTTT
1 TTAATATATCATTTT
*
14799624 TTACTATAT
1 TTAATATAT
14799633 TATTATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAATATATCATTTT
Found at i:14799894 original size:26 final size:26
Alignment explanation
Indices: 14799858--14799910 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14799848 TGGAAAAAGG
14799858 ATAATAGGTCAAAATATCTCATTTAT
1 ATAATAGGTCAAAATATCTCATTTAT
14799884 ATAATAGGTCAAAATATCTCATTTAT
1 ATAATAGGTCAAAATATCTCATTTAT
14799910 A
1 A
14799911 CTTTGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (26 bp):
ATAATAGGTCAAAATATCTCATTTAT
Found at i:14803527 original size:26 final size:26
Alignment explanation
Indices: 14803497--14803560 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 26
14803487 TCAAACAACC
14803497 TTGCTGATTACTAGTCCATTTGTGCA
1 TTGCTGATTACTAGTCCATTTGTGCA
14803523 TTGCTGATTACTAGTCCATTTGTGCA
1 TTGCTGATTACTAGTCCATTTGTGCA
14803549 TTGTACTGATTA
1 TTG--CTGATTA
14803561 ATTTTGGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 29 0.81
28 7 0.19
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (26 bp):
TTGCTGATTACTAGTCCATTTGTGCA
Found at i:14804875 original size:27 final size:27
Alignment explanation
Indices: 14804845--14804896 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
14804835 GGATATCATA
*
14804845 ATATTTGAAAAAGTAGGTCTGACAATG
1 ATATTTGAAAAAGTAGGTCTAACAATG
14804872 ATATTTGAAAAAGTAGGTCTAACAA
1 ATATTTGAAAAAGTAGGTCTAACAA
14804897 GTAAGGTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (27 bp):
ATATTTGAAAAAGTAGGTCTAACAATG
Found at i:14806382 original size:31 final size:31
Alignment explanation
Indices: 14806337--14806417 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
14806327 CTTCCTATAT
* *
14806337 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
14806368 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
14806399 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
14806418 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:14806708 original size:21 final size:20
Alignment explanation
Indices: 14806651--14806708 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
14806641 TCTGCTACCA
*
14806651 TCGCTCGTGCCTCTGCCTCTC
1 TCGCT-GTGCCTCTGCCTCCC
**
14806672 TCGCTGTGGTTGCTGCCTCCC
1 TCGCTGTGCCT-CTGCCTCCC
*
14806693 TCTCTGCTGCCTCTGC
1 TCGCTG-TGCCTCTGC
14806709 TCTAAGTTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 4 0.14
21 22 0.76
22 3 0.10
ACGTcount: A:0.00, C:0.43, G:0.22, T:0.34
Consensus pattern (20 bp):
TCGCTGTGCCTCTGCCTCCC
Found at i:14812306 original size:14 final size:15
Alignment explanation
Indices: 14812269--14812328 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
14812259 ATTATGTAAG
*
14812269 TTAAGTAAATTATAT
1 TTAATTAAATTATAT
14812284 TTAATTAAATATATAT
1 TTAATTAAAT-TATAT
*
14812300 TT-ATAAAAATTAT-T
1 TTAAT-TAAATTATAT
*
14812314 TTAATTAAATAATAT
1 TTAATTAAATTATAT
14812329 ACATGTCGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 9 0.24
15 17 0.46
16 11 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
TTAATTAAATTATAT
Found at i:14812533 original size:24 final size:24
Alignment explanation
Indices: 14812505--14812572 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
14812495 ACTTAAATGG
14812505 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
14812529 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
14812553 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
14812573 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:14813659 original size:373 final size:373
Alignment explanation
Indices: 14812651--14813936 Score: 2468
Period size: 372 Copynumber: 3.5 Consensus size: 373
14812641 AATTGAAACA
14812651 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
14812716 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
14812781 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
14812846 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
*
14812911 TAATAGTATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
*
14812976 ATAAATATTCAATAGTAAATAAGCTCGATAGAACTGTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTGTTTTCAAGTCTT
*
14813024 TTTGAATTTTTTAAGATTCATCATACATGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
*
14813089 CA-CTCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
14813153 AATAAGGTTGGAGAGAAGGTCCGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
14813218 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
14813283 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
*
14813348 ATAAATATACAATAGTAAATGAGCTCGATAGAACTGTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTGTTTTCAAGTCTT
14813396 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
14813461 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
14813526 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAATAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
*
14813591 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTACTTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
14813656 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
*
14813721 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTGTTTTCAAGTCTT
14813769 TTTGAATTTTTTAAGATTCATCATACGTGG-GTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
14813833 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
14813898 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTT
14813937 AATGGACAAG
Statistics
Matches: 898, Mismatches: 14, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
372 503 0.56
373 395 0.44
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (373 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTGTTTTCAAGTCTT
Found at i:14817388 original size:14 final size:15
Alignment explanation
Indices: 14817364--14817393 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14817354 CAAAAACTTC
14817364 AGAATTTATGTATTT
1 AGAATTTATGTATTT
14817379 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
14817393 A
1 A
14817394 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:14819390 original size:28 final size:28
Alignment explanation
Indices: 14819320--14819412 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 28
14819310 TTTTGTGGGG
14819320 GGGTTTAGGGTTT-TGGAGTTTATAGA-TTA
1 GGGTTTAGGGTTTAT-GA-TTTA-AGATTTA
* * * *
14819349 GTGTTTATGTTTTATGATTTAAAATTTA
1 GGGTTTAGGGTTTATGATTTAAGATTTA
14819377 GGGTTTAGGGTTTAATG-TTTAAGATTTAA
1 GGGTTTAGGGTTT-ATGATTTAAGATTT-A
14819406 GGGTTTA
1 GGGTTTA
14819413 CAGAAAGCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 2 0.04
28 26 0.50
29 23 0.44
30 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (28 bp):
GGGTTTAGGGTTTATGATTTAAGATTTA
Found at i:14819747 original size:41 final size:40
Alignment explanation
Indices: 14819702--14819959 Score: 209
Period size: 41 Copynumber: 6.6 Consensus size: 40
14819692 AACTTTTTGC
*
14819702 GGCGTTTGGACCAAAAACGCCGCTATTAATCAGTTTTTAGT
1 GGCGTTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
14819743 GGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTTGT
1 GGCG-TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
14819784 GGCGTTTGGGACAAAAACGCCGC-----A--A---TTTAGT
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
** *
14819815 GGCGTTTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGT
1 GGCGTTTG-GACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
14819856 GGCGTTTTGATAAAAACGCCGCTATTGACCAGTTTTTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * * *
14819896 GGTGTTTTTGG-CAAAAACGCCACTATAGTTTAGCTTTTAGT
1 GGCG--TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
14819937 GGCGTTTCGGAC--AAACGCCGCTA
1 GGCGTTT-GGACAAAAACGCCGCTA
14819960 ATGTATATTA
Statistics
Matches: 175, Mismatches: 25, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
30 1 0.01
31 24 0.14
34 1 0.01
36 2 0.01
38 1 0.01
39 13 0.07
40 37 0.21
41 86 0.49
42 10 0.06
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (40 bp):
GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:14819832 original size:72 final size:71
Alignment explanation
Indices: 14819737--14819877 Score: 194
Period size: 72 Copynumber: 2.0 Consensus size: 71
14819727 TTAATCAGTT
* *
14819737 TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTTGTGGCGTTTGGGACAAAAAC
1 TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTT-GGACAAAAAC
14819802 GCCGCAA
65 GCCGCAA
* * * * *
14819809 TTTAGTGGCG-TTTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTTGATAAAAAC
1 TTTAGTGGCGTTTTG-GATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGACAAAAAC
14819873 GCCGC
65 GCCGC
14819878 TATTGACCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
71 17 0.28
72 44 0.72
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (71 bp):
TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGACAAAAACG
CCGCAA
Found at i:14839216 original size:21 final size:21
Alignment explanation
Indices: 14839192--14839233 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14839182 CACCTAAATA
*
14839192 GAACTCTTAATATGAATCAAT
1 GAACTCTTAATATAAATCAAT
*
14839213 GAACTCTTATTATAAATCAAT
1 GAACTCTTAATATAAATCAAT
14839234 CTTTCATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (21 bp):
GAACTCTTAATATAAATCAAT
Found at i:14840632 original size:27 final size:28
Alignment explanation
Indices: 14840602--14840654 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
14840592 GTTGGGCATG
14840602 TTTTGTTATATT-TGCAATT-GAGTCCTA
1 TTTT-TTATATTATGCAATTGGAGTCCTA
*
14840629 TTTTTTATTTTATGCAATTGGAGTCC
1 TTTTTTATATTATGCAATTGGAGTCC
14840655 CTAAATTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 11 0.48
28 6 0.26
ACGTcount: A:0.21, C:0.11, G:0.15, T:0.53
Consensus pattern (28 bp):
TTTTTTATATTATGCAATTGGAGTCCTA
Found at i:14840746 original size:13 final size:13
Alignment explanation
Indices: 14840728--14840759 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14840718 TTTACTCTTG
14840728 ATTTTATAAAAAT
1 ATTTTATAAAAAT
*
14840741 ATTTTATTAAAAT
1 ATTTTATAAAAAT
14840754 ATTTTA
1 ATTTTA
14840760 CTACAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTATAAAAAT
Found at i:14845199 original size:38 final size:38
Alignment explanation
Indices: 14845124--14845200 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
14845114 ATCGCCCTAC
* **
14845124 TGAGTACATGTTAAGCATGTCTACTGTTAGTGATGAAT
1 TGAGTACATGTTAAACATGTCTACTGCCAGTGATGAAT
14845162 TGAGTACATGTTAAACATGTCTACTGCCAGT-ATTGAAT
1 TGAGTACATGTTAAACATGTCTACTGCCAGTGA-TGAAT
14845200 T
1 T
14845201 ATTCTATTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 34 0.97
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (38 bp):
TGAGTACATGTTAAACATGTCTACTGCCAGTGATGAAT
Found at i:14847697 original size:32 final size:32
Alignment explanation
Indices: 14847661--14847721 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
14847651 TGCATTTTAA
14847661 CATTTTAATAGTTAATGGATGATGGGCATTAG
1 CATTTTAATAGTTAATGGATGATGGGCATTAG
14847693 CATTTTAATAGTTAATGGATGATGGGCAT
1 CATTTTAATAGTTAATGGATGATGGGCAT
14847722 GGTAAGCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.38
Consensus pattern (32 bp):
CATTTTAATAGTTAATGGATGATGGGCATTAG
Found at i:14854777 original size:24 final size:24
Alignment explanation
Indices: 14854749--14854797 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14854739 CCAAAATAAT
14854749 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
14854773 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
14854797 A
1 A
14854798 CAAATATACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Done.