Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 54 of 332
Found at i:15904391 original size:28 final size:28
Alignment explanation
Indices: 15904359--15904417 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
15904349 ATATGAATTG
15904359 AATTCAATTGTGAATATAATTCATCATA
1 AATTCAATTGTGAATATAATTCATCATA
15904387 AATTCAATTGTGAATATAATTCATCATA
1 AATTCAATTGTGAATATAATTCATCATA
15904415 AAT
1 AAT
15904418 AAAGATAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (28 bp):
AATTCAATTGTGAATATAATTCATCATA
Found at i:15907795 original size:26 final size:26
Alignment explanation
Indices: 15907759--15907866 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
15907749 TGAAATTCCA
*
15907759 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
15907785 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
15907811 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
15907837 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15907863 ATCA
1 ATCA
15907867 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15911379 original size:25 final size:25
Alignment explanation
Indices: 15911335--15911399 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
15911325 TACCAGAAGC
* *
15911335 AAATAAAAGAAAAATTAAAATGTA-AA
1 AAATAAAATAAAAA-CAAAAT-TATAA
* *
15911361 AATTAAACTAAAAACAAAATTATAA
1 AAATAAAATAAAAACAAAATTATAA
15911386 AAATAAAATAAAAA
1 AAATAAAATAAAAA
15911400 TAGCTAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 2 0.06
25 19 0.59
26 11 0.34
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (25 bp):
AAATAAAATAAAAACAAAATTATAA
Found at i:15913954 original size:21 final size:21
Alignment explanation
Indices: 15913916--15913960 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
15913906 AACTTATCAA
15913916 TTCAAATATTATAATAAAAAAT
1 TTCAAATA-TATAATAAAAAAT
*
15913938 TTCAAATA-ATAATTAAAACAT
1 TTCAAATATATAA-TAAAAAAT
15913959 TT
1 TT
15913961 TTAACATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 8 0.38
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
TTCAAATATATAATAAAAAAT
Found at i:15913955 original size:20 final size:22
Alignment explanation
Indices: 15913916--15913960 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
15913906 AACTTATCAA
15913916 TTCAAATATTATAATAAAAA-AT
1 TTCAAATA-TATAATAAAAACAT
*
15913938 TTCAAATA-ATAATTAAAACAT
1 TTCAAATATATAATAAAAACAT
15913959 TT
1 TT
15913961 TTAACATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
TTCAAATATATAATAAAAACAT
Found at i:15916303 original size:26 final size:25
Alignment explanation
Indices: 15916227--15916297 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 25
15916217 ATTTACCTCA
*
15916227 TTTAATTATTATTTTAATGTAATAATGAT
1 TTTAATTATTA-TTTAATATAA-AA--AT
15916256 TTTAATTATTATTTAATATAAAAAT
1 TTTAATTATTATTTAATATAAAAAT
15916281 TTTAATATATTATTTAA
1 TTTAAT-TATTATTTAA
15916298 CTTAAATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
25 8 0.20
26 10 0.25
27 2 0.05
28 9 0.22
29 11 0.28
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (25 bp):
TTTAATTATTATTTAATATAAAAAT
Found at i:15922345 original size:5 final size:5
Alignment explanation
Indices: 15922335--15922411 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
15922325 ATTAATGTCC
* *
15922335 ATTAT ATTAT ATCTATT ATTAT -TTACT -TCTAA ATTAT ATGTA- ATTAA
1 ATTAT ATTAT AT-TA-T ATTAT ATTA-T AT-TAT ATTAT AT-TAT ATTAT
* *
15922382 ATTTT ATTAT ATTAT ATGAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
15922412 TCTATATAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
4 5 0.09
5 41 0.71
6 9 0.16
7 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:15922495 original size:18 final size:17
Alignment explanation
Indices: 15922462--15922507 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
15922452 TATTTTCTAA
*
15922462 TGTATGTATTATTATTAT
1 TGTAT-TATTAATATTAT
*
15922480 TTTAGTTATTAATATTAT
1 TGTA-TTATTAATATTAT
15922498 TGTATTATTA
1 TGTATTATTA
15922508 TATGCTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 6 0.25
18 17 0.71
19 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (17 bp):
TGTATTATTAATATTAT
Found at i:15929823 original size:40 final size:40
Alignment explanation
Indices: 15929740--15930002 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
15929730 TTGAATGCTG
* * * * * *
15929740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
15929780 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
15929820 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
15929860 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
15929900 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
15929940 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
15929979 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
15930003 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:15930022 original size:79 final size:80
Alignment explanation
Indices: 15929779--15930037 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
15929769 AAGTGAATAT
* * * * * * *
15929779 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
15929843 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
15929859 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
15929924 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
15929939 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
15930003 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
15930018 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
15930038 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:15937871 original size:206 final size:206
Alignment explanation
Indices: 15937509--15938182 Score: 1091
Period size: 206 Copynumber: 3.3 Consensus size: 206
15937499 GTAGATCTGG
15937509 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
*
15937574 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
15937639 AGAACAAATCAAAGTTTGGCGTCTCCATATTCAATGGAGAGCAGATACATAGTAGATCTGGTCTT
130 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGTAGATCTGGCCTT
15937704 CAGATGTTTATA
195 CAGATGTTTATA
* * *
15937716 CTAAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
*
15937781 ATTTGGCTTTCACGTGTTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
15937846 GAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAGAGCAGATACATAGTAGATCTGGCCTTT
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGTAGATCTGGCCTTC
* *
15937911 AGATGTATATG
196 AGATGTTTATA
* *
15937922 CTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* *
15937987 ATTTGGCTTCCACGTGTTTGCGATGAAGCAAATCTAAGAT-ATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * **
15938051 GAACAAATCAAAGTCTGGCATCTCCAT-TTCGACGAAGAGCAGATACATAGCAGACCTAACCTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGTAGATCTGGCCTTC
15938115 AGATGTTTATA
196 AGATGTTTATA
* *
15938126 CTGAAGCAGATCCAAGATGATTTGGCATACTTGTGTTTATAAGGAACAAATCGAAGA
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
15938183 AGCAGATTTA
Statistics
Matches: 430, Mismatches: 37, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
204 92 0.21
205 48 0.11
206 284 0.66
207 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGTAGATCTGGCCTTC
AGATGTTTATA
Found at i:15940084 original size:5 final size:5
Alignment explanation
Indices: 15940074--15940151 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
15940064 ATTAATGTCC
* * *
15940074 ATTAT ATTAT ATCTATT ATTAT -TTACT TTTAA ATTAT ATGTA- ATTAA
1 ATTAT ATTAT AT-TA-T ATTAT ATTA-T ATTAT ATTAT AT-TAT ATTAT
* *
15940121 ATTTTT ATTAT ATTAT ATGAT ATTAT ATTAT
1 A-TTAT ATTAT ATTAT ATTAT ATTAT ATTAT
15940152 TCTATATAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.09
5 38 0.66
6 12 0.21
7 3 0.05
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:15940216 original size:3 final size:3
Alignment explanation
Indices: 15940208--15940248 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
15940198 CTAATGTATG
*
15940208 TAT TAT TAT TAT T-T TATT TAT TAA TAT TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
15940249 ATGCTTCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 4 0.12
3 26 0.79
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:15940235 original size:18 final size:17
Alignment explanation
Indices: 15940208--15940247 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
15940198 CTAATGTATG
*
15940208 TATTATTATTATTTTATT
1 TATTAATATTATTTTA-T
15940226 TATTAATATTATTTTAT
1 TATTAATATTATTTTAT
15940243 TATTA
1 TATTA
15940248 TATGCTTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTAATATTATTTTAT
Found at i:15946262 original size:18 final size:18
Alignment explanation
Indices: 15946239--15946293 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
15946229 TTAGCAAACA
15946239 AAATATATAAATATAAAT
1 AAATATATAAATATAAAT
* *
15946257 AAATATTTATATATAAAAT
1 AAATATATAAATAT-AAAT
15946276 AAA-ATATAAAT-TAAAT
1 AAATATATAAATATAAAT
15946292 AA
1 AA
15946294 TTTATATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 6 0.19
17 1 0.03
18 18 0.56
19 7 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATATATAAATATAAAT
Found at i:15946282 original size:30 final size:32
Alignment explanation
Indices: 15946247--15946305 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
15946237 CAAAATATAT
15946247 AAATATAAA-TAAAT-ATTTATATATAAAATA
1 AAATATAAATTAAATAATTTATATATAAAATA
*
15946277 AAATATAAATTAAATAATTTATATTTAAA
1 AAATATAAATTAAATAATTTATATATAAA
15946306 TTGTTAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 9 0.35
31 5 0.19
32 12 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (32 bp):
AAATATAAATTAAATAATTTATATATAAAATA
Found at i:15947106 original size:267 final size:267
Alignment explanation
Indices: 15946631--15947165 Score: 1070
Period size: 267 Copynumber: 2.0 Consensus size: 267
15946621 CAGCAAAAAA
15946631 TTCTGAAGAAGTCTTAGCCTTTTATAGGCATTCAATATGGAAGAATTTTGGAAATATCCATATAT
1 TTCTGAAGAAGTCTTAGCCTTTTATAGGCATTCAATATGGAAGAATTTTGGAAATATCCATATAT
15946696 TAAGGATACAAAATCTGCATTAAAGGAGCAATTAAATCCATTTGATTAAAATCAAATCAAATTTA
66 TAAGGATACAAAATCTGCATTAAAGGAGCAATTAAATCCATTTGATTAAAATCAAATCAAATTTA
15946761 TTAGAATAAAATAAAAGTAGGATATGTGTCCTTTTTTGAATCAAATTTTGTGTAATTTTCTGAGG
131 TTAGAATAAAATAAAAGTAGGATATGTGTCCTTTTTTGAATCAAATTTTGTGTAATTTTCTGAGG
15946826 GAAAAAATATTTTCGTTTTGGGCTAAAATATTTACAGGCCCATTTTGAGCCTGATCGATCGAACA
196 GAAAAAATATTTTCGTTTTGGGCTAAAATATTTACAGGCCCATTTTGAGCCTGATCGATCGAACA
15946891 TTTCACG
261 TTTCACG
15946898 TTCTGAAGAAGTCTTAGCCTTTTATAGGCATTCAATATGGAAGAATTTTGGAAATATCCATATAT
1 TTCTGAAGAAGTCTTAGCCTTTTATAGGCATTCAATATGGAAGAATTTTGGAAATATCCATATAT
15946963 TAAGGATACAAAATCTGCATTAAAGGAGCAATTAAATCCATTTGATTAAAATCAAATCAAATTTA
66 TAAGGATACAAAATCTGCATTAAAGGAGCAATTAAATCCATTTGATTAAAATCAAATCAAATTTA
15947028 TTAGAATAAAATAAAAGTAGGATATGTGTCCTTTTTTGAATCAAATTTTGTGTAATTTTCTGAGG
131 TTAGAATAAAATAAAAGTAGGATATGTGTCCTTTTTTGAATCAAATTTTGTGTAATTTTCTGAGG
15947093 GAAAAAATATTTTCGTTTTGGGCTAAAATATTTACAGGCCCATTTTGAGCCTGATCGATCGAACA
196 GAAAAAATATTTTCGTTTTGGGCTAAAATATTTACAGGCCCATTTTGAGCCTGATCGATCGAACA
15947158 TTTCACG
261 TTTCACG
15947165 T
1 T
15947166 CGCCCATGTC
Statistics
Matches: 268, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 268 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.35
Consensus pattern (267 bp):
TTCTGAAGAAGTCTTAGCCTTTTATAGGCATTCAATATGGAAGAATTTTGGAAATATCCATATAT
TAAGGATACAAAATCTGCATTAAAGGAGCAATTAAATCCATTTGATTAAAATCAAATCAAATTTA
TTAGAATAAAATAAAAGTAGGATATGTGTCCTTTTTTGAATCAAATTTTGTGTAATTTTCTGAGG
GAAAAAATATTTTCGTTTTGGGCTAAAATATTTACAGGCCCATTTTGAGCCTGATCGATCGAACA
TTTCACG
Found at i:15950163 original size:87 final size:87
Alignment explanation
Indices: 15949966--15950708 Score: 741
Period size: 87 Copynumber: 8.7 Consensus size: 87
15949956 ATCAAGATCT
* * * * * * *
15949966 AATAAAATCTGTTAAACGACGGGAATAAATCCCAAAATAGA--TTATTCAA-TTT-ACTTCTAAT
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAGT
* * *
15950027 TT-AATAACAAAAT-TAAAATCG
66 TTGGA-AACAAAATAAAAAATGG
* * * * ** * * * *
15950048 AATAAATTCTATTAAACAGCTTGAATAAATTCTGGAACATATTTTATTTAATTTTAATTTCTAGT
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAGT
* *
15950113 TTGGTAACAAAATAAAAAAAGG
66 TTGGAAACAAAATAAAAAATGG
* * *
15950135 AATAAAATCTGTTGAACGGCGGGAATAAAACCCGAAATAGATTTTATTTAATTTTAATTTCTCGT
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAGT
* *
15950200 TTGGCAA-AAAAT-AAAAATGT
66 TTGGAAACAAAATAAAAAATGG
* ** * *
15950220 AATAAAATCTCTTGAATAGCGGGAATAAAAT-CCGAAATAGATTTTATTTAATTTTAATTTCTCG
1 AATAAAATCTGTTGAACGGCGGGAAT-AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAG
15950284 TTTGGAAACAAAATAAAAAATGG
65 TTTGGAAACAAAATAAAAAATGG
* * * * * * *
15950307 AATAAAATATGTTGAACGGAGGGAATAAAACCCAAAATAGATTTTATTTAATTTTAATTTTTCGT
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAGT
*
15950372 TT-GACAACAAAATAAAAAATGA
66 TTGGA-AACAAAATAAAAAATGG
* * * *
15950394 AATAAAATCCGTTGAACGGCGGGAATCAAA-CCCAAAATAGATTTTATTTAATTTTAA-TACTTA
1 AATAAAATCTGTTGAACGGCGGGAAT-AAATCCCGAAACAGATTTTATTTAATTTTAATTTC-TA
15950457 -TTTGGAAACAAAATAAAAATATGG
64 GTTTGGAAACAAAATAAAAA-ATGG
* *
15950481 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGA-TTTATTTTATTTTAA-TGCTCA-
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCT-AG
* *
15950543 TTTGGAAATAAAATAAAAAATAG
65 TTTGGAAACAAAATAAAAAATGG
* * * * * *
15950566 AAT-AAATCTGTTGAATGGTGGGAATAAATCCTGAAACATATTTTTATTTAATTTT-ATTACTTG
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGA-TTTTATTTAATTTTAATTTCTAG
* *
15950629 TTTGGAAA-AAAATAAAATATAG
65 TTTGGAAACAAAATAAAAAATGG
* * * *
15950651 AATAAAATCTGTTGAACGGTGGGAATAAATGCTGAAACAGATATTATTTAATTTTAAT
1 AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAAT
15950709 ATTTATTTTC
Statistics
Matches: 561, Mismatches: 77, Indels: 42
0.82 0.11 0.06
Matches are distributed among these distances:
82 29 0.05
84 40 0.07
85 109 0.19
86 149 0.27
87 231 0.41
88 3 0.01
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.33
Consensus pattern (87 bp):
AATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTTCTAGT
TTGGAAACAAAATAAAAAATGG
Found at i:15950296 original size:172 final size:172
Alignment explanation
Indices: 15950088--15950708 Score: 767
Period size: 172 Copynumber: 3.6 Consensus size: 172
15950078 TCTGGAACAT
* * *
15950088 ATTTTATTTAATTTTAATTTCTAGTTTGGTAACAAAATAAAAAAAGGAATAAAATCTGTTGAACG
1 ATTTTATTTAATTTTAATTACTTGTTTGGAAACAAAATAAAAAAAGGAATAAAATCTGTTGAACG
*
15950153 GCGGGAATAAAACCCGAAATAGATTTTATTTAATTTTAATTTCTCGTTTGGCAA-AAAAT-AAAA
66 GCGGGAATAAAACCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTGGCAACAAAATAAAAA
*
15950216 ATGTAATAAAATCTCTTGAATAGCGGGAATAAAATCCGAAATAG
131 ATG-AATAAAATCTCTTGAATGGCGGGAAT-AAATCCGAAATAG
* * * *
15950260 ATTTTATTTAATTTTAATTTCTCGTTTGGAAACAAAATAAAAAATGGAATAAAATATGTTGAACG
1 ATTTTATTTAATTTTAATTACTTGTTTGGAAACAAAATAAAAAAAGGAATAAAATCTGTTGAACG
* * * * *
15950325 GAGGGAATAAAACCCAAAATAGATTTTATTTAATTTTAATTTTTCGTTTGACAACAAAATAAAAA
66 GCGGGAATAAAACCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTGGCAACAAAATAAAAA
* * *
15950390 ATGAAATAAAATC-CGTTGAACGGCGGGAATCAAACCCAAAATAG
131 ATG-AATAAAATCTC-TTGAATGGCGGGAAT-AAATCCGAAATAG
* *
15950434 ATTTTATTTAATTTTAA-TACTTATTTGGAAACAAAATAAAAATATGGAATAAAATCTGTTGAAC
1 ATTTTATTTAATTTTAATTACTTGTTTGGAAACAAAATAAAAA-AAGGAATAAAATCTGTTGAAC
* * * * * *
15950498 GGCGGGAATAAATCCCGAAACAGA-TTTATTTTATTTTAA-TGCTCATTTGGAAATAAAATAAAA
65 GGCGGGAATAAAACCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTGGCAACAAAATAAAA
* * * *
15950561 AATAGAAT-AAATCTGTTGAATGGTGGGAATAAATCCTGAAACAT
130 AAT-GAATAAAATCTCTTGAATGGCGGGAATAAATCC-GAAATAG
*
15950605 ATTTTTATTTAATTTT-ATTACTTGTTTGGAAA-AAAATAAAATATA-GAATAAAATCTGTTGAA
1 A-TTTTATTTAATTTTAATTACTTGTTTGGAAACAAAATAAAA-AAAGGAATAAAATCTGTTGAA
* ** * *
15950667 CGGTGGGAATAAATGCTGAAACAGATATTATTTAATTTTAAT
64 CGGCGGGAATAAAACCCGAAACAGATTTTATTTAATTTTAAT
15950709 ATTTATTTTC
Statistics
Matches: 393, Mismatches: 44, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
170 44 0.11
171 46 0.12
172 163 0.41
173 43 0.11
174 97 0.25
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (172 bp):
ATTTTATTTAATTTTAATTACTTGTTTGGAAACAAAATAAAAAAAGGAATAAAATCTGTTGAACG
GCGGGAATAAAACCCGAAACAGATTTTATTTAATTTTAATTTCTCGTTTGGCAACAAAATAAAAA
ATGAATAAAATCTCTTGAATGGCGGGAATAAATCCGAAATAG
Found at i:15950870 original size:14 final size:14
Alignment explanation
Indices: 15950828--15950889 Score: 62
Period size: 14 Copynumber: 4.7 Consensus size: 14
15950818 CACGTTAGCG
15950828 AATA-AAATATATA
1 AATATAAATATATA
15950841 AATATAAATA-AGTA
1 AATATAAATATA-TA
**
15950855 AATATTTATATATA
1 AATATAAATATATA
15950869 AA-ATAAA-ATATA
1 AATATAAATATATA
15950881 AAT-TAAATA
1 AATATAAATA
15950890 ATTTATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
12 11 0.28
13 9 0.22
14 19 0.47
15 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AATATAAATATATA
Found at i:15956748 original size:44 final size:44
Alignment explanation
Indices: 15956685--15956774 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
15956675 TATAATGAGG
15956685 AATGTCTCCCCTACTTAAAACACATTGTCCTCGATGTGAAAGTA
1 AATGTCTCCCCTACTTAAAACACATTGTCCTCGATGTGAAAGTA
*
15956729 AATGTCTCCCCTATTTAAAACACATTGTCCTCGATGTGAAAGTA
1 AATGTCTCCCCTACTTAAAACACATTGTCCTCGATGTGAAAGTA
15956773 AA
1 AA
15956775 AAAAAATATG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (44 bp):
AATGTCTCCCCTACTTAAAACACATTGTCCTCGATGTGAAAGTA
Found at i:15957414 original size:10 final size:10
Alignment explanation
Indices: 15957401--15957432 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15957391 AAATAAAGTA
15957401 AAATTAAATT
1 AAATTAAATT
*
15957411 AAATCAAATT
1 AAATTAAATT
15957421 AAATTAAATT
1 AAATTAAATT
15957431 AA
1 AA
15957433 GAAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTAAATT
Found at i:15957453 original size:15 final size:15
Alignment explanation
Indices: 15957370--15957453 Score: 57
Period size: 15 Copynumber: 5.6 Consensus size: 15
15957360 TCAACATCCA
*
15957370 AAAATAAAAT-AATA
1 AAAATAAAATAAATG
15957384 AATAATAAAATAAA-G
1 AA-AATAAAATAAATG
* *
15957399 TAAAATTAAATTAAATC
1 -AAAA-TAAAATAAATG
* * *
15957416 AAATTAAATTAAATT
1 AAAATAAAATAAATG
*
15957431 AAGA-AAAATAAATG
1 AAAATAAAATAAATG
15957445 AAAATAAAA
1 AAAATAAAA
15957454 ATTGGGTTGC
Statistics
Matches: 54, Mismatches: 10, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
14 13 0.24
15 26 0.48
16 15 0.28
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (15 bp):
AAAATAAAATAAATG
Found at i:15961795 original size:78 final size:81
Alignment explanation
Indices: 15961665--15961848 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
15961655 GCTACTCGTT
* *
15961665 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
15961729 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
15961745 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
15961808 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
15961824 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15961849 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 47 0.51
79 29 0.31
80 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:15961848 original size:40 final size:40
Alignment explanation
Indices: 15961646--15961848 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
15961636 CGGAATTTAA
** *
15961646 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
15961686 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
15961726 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
15961765 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
15961804 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
15961844 CCGGA
1 CCGGA
15961849 CATCATTCAA
Statistics
Matches: 144, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 23 0.16
39 23 0.16
40 85 0.59
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:15966626 original size:40 final size:39
Alignment explanation
Indices: 15966573--15966755 Score: 169
Period size: 39 Copynumber: 4.6 Consensus size: 39
15966563 ATGATGTCCG
*
15966573 GGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATATCC
1 GGCTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCAAATCC
* *
15966612 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCC
1 GG-CTAAGATCCGAAGGCATTTGTGCAAGATACCAAATCC
* * *
15966652 GGCTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAAATCC
* * * *
15966691 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 -GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAAATCC
*
15966730 GGGTTAAG-TCCCGAAGGCATTTGTGC
1 -GGCTAAGAT-CCGAAGGCATTTGTGC
15966756 GAGTTACTAT
Statistics
Matches: 129, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
39 73 0.57
40 47 0.36
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAAATCC
Found at i:15966756 original size:40 final size:40
Alignment explanation
Indices: 15966569--15966792 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
15966559 TTGAATGATG
* * * *
15966569 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
15966609 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15966649 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
15966688 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15966727 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15966768 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15966793 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 72 0.44
40 83 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15966757 original size:79 final size:80
Alignment explanation
Indices: 15966569--15966792 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
15966559 TTGAATGATG
* * * *
15966569 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
15966632 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
15966649 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
15966710 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * * *
15966727 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
15966792 G
66 G
15966793 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 16
0.84 0.06 0.11
Matches are distributed among these distances:
78 31 0.24
79 67 0.53
80 28 0.22
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:15966814 original size:79 final size:78
Alignment explanation
Indices: 15966576--15966825 Score: 258
Period size: 79 Copynumber: 3.2 Consensus size: 78
15966566 ATGTCCGGGC
* * * *
15966576 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
15966639 AGATACTAAATCCGGC
64 AG-GACTAAATCCGGT
*
15966655 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
15966717 AGTTACTAAATCCGGGT
64 AG-GACTAAATCC-GGT
* * **
15966734 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
15966799 GAGCTATATCCGGT
66 GA-CTAAATCCGGT
* *
15966813 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
15966826 TACGTGATTT
Statistics
Matches: 146, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
78 31 0.21
79 81 0.55
80 34 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAAATCCGGT
Found at i:15970967 original size:40 final size:40
Alignment explanation
Indices: 15970804--15970967 Score: 208
Period size: 40 Copynumber: 4.1 Consensus size: 40
15970794 CGGAATTTAA
** *
15970804 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
15970844 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
15970884 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
15970923 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
15970963 CCGGA
1 CCGGA
15970968 CATCATTCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 26 0.24
40 83 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:15976577 original size:43 final size:43
Alignment explanation
Indices: 15976411--15976816 Score: 462
Period size: 43 Copynumber: 9.5 Consensus size: 43
15976401 TCGCGGCGTT
* * * * * *
15976411 TTTTAT-AAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGTGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* * * * * *
15976453 TCTTA-AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* * * *
15976495 TTTT-TTAAAATCGCCGCTATAGACCAAGAAC-TTTAGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACC-TGTACTTTTAGCGGCGC
* *
15976537 TTTTATAAAAAACGTCGCTATAGACCTGTACTTTTCGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* *
15976580 TTTTATAAAAAACGCCGCTATAGACATGTACTTTTAGCGGCCC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* * *
15976623 TTTTGTAAAAAACGCCGCTATAGACCAAGAAC-TTTAGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACC-TGTACTTTTAGCGGCGC
15976666 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* * * *
15976709 TTTTTGTAAAAAAAGTCGCTATAGACCTGTAATTTTAGCGGCGC
1 -TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
* * *
15976753 TTTTTTAAAAAATGCCGCTATAGACTTGTACTTTTAGCGGCGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
*
15976796 TTTTTTTAAAAAACGCCGCTA
1 -TTTTATAAAAAACGCCGCTA
15976817 ATTTGCCCAG
Statistics
Matches: 317, Mismatches: 38, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
42 77 0.24
43 179 0.56
44 61 0.19
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGC
Found at i:15977138 original size:21 final size:21
Alignment explanation
Indices: 15977114--15977161 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
15977104 TCCTATTCTG
*
15977114 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTAC
15977135 CTCCGCCTCCCTCGCTGCTAC
1 CTCCGCCTCCCTCGCTGCTAC
15977156 CTCCGC
1 CTCCGC
15977162 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.58, G:0.17, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTAC
Found at i:15977749 original size:18 final size:18
Alignment explanation
Indices: 15977717--15977754 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15977707 TACAATATAG
15977717 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
15977736 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
15977753 TA
1 TA
15977755 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:15978083 original size:14 final size:15
Alignment explanation
Indices: 15978055--15978087 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15978045 GGCTTATGGG
15978055 TTTTTTAAAATATTC
1 TTTTTTAAAATATTC
*
15978070 TTTTTTCAAA-ATTC
1 TTTTTTAAAATATTC
15978084 TTTT
1 TTTT
15978088 ATTGTCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTTTAAAATATTC
Found at i:15982888 original size:22 final size:21
Alignment explanation
Indices: 15982868--15982913 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
15982858 TTTTTAATTC
*
15982868 TTTTT-TAAGGTCAATAGAAT
1 TTTTTATAAGCTCAATAGAAT
* *
15982888 TATTTATAAGCTCCATAGAAT
1 TTTTTATAAGCTCAATAGAAT
15982909 TTTTT
1 TTTTT
15982914 GGAAATCTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.48
Consensus pattern (21 bp):
TTTTTATAAGCTCAATAGAAT
Found at i:15984000 original size:7 final size:7
Alignment explanation
Indices: 15983988--15984018 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15983978 AGACATTTAA
15983988 AAATATT
1 AAATATT
15983995 AAATATT
1 AAATATT
15984002 AAATATT
1 AAATATT
15984009 AAATATT
1 AAATATT
15984016 AAA
1 AAA
15984019 ATCAAGTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAATATT
Found at i:15987804 original size:29 final size:29
Alignment explanation
Indices: 15987765--15987828 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
15987755 TCTAAATTTA
* * *
15987765 AAACCCTAAACCTGATACTCTAAACCCCT
1 AAACCCTAAACCTGAAACACAAAACCCCT
*
15987794 AAACCTTAAACCTGAAACACAAAACCCCT
1 AAACCCTAAACCTGAAACACAAAACCCCT
15987823 -AACCCT
1 AAACCCT
15987829 GAACTTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.42, C:0.38, G:0.03, T:0.17
Consensus pattern (29 bp):
AAACCCTAAACCTGAAACACAAAACCCCT
Found at i:15987811 original size:22 final size:22
Alignment explanation
Indices: 15987763--15987804 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15987753 ACTCTAAATT
* *
15987763 TAAAACCCTAAACCTGATACTC
1 TAAACCCCTAAACCTGAAACTC
*
15987785 TAAACCCCTAAACCTTAAAC
1 TAAACCCCTAAACCTGAAAC
15987805 CTGAAACACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.33, G:0.02, T:0.21
Consensus pattern (22 bp):
TAAACCCCTAAACCTGAAACTC
Found at i:15988333 original size:36 final size:38
Alignment explanation
Indices: 15988292--15988367 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
15988282 CTTCAAATAC
* * *
15988292 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
15988328 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
15988367 T
1 T
15988368 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:15988611 original size:41 final size:41
Alignment explanation
Indices: 15988547--15988847 Score: 439
Period size: 41 Copynumber: 7.4 Consensus size: 41
15988537 GTTCTATGAC
*
15988547 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
15988588 TTTTAGCGGCGTTTCACCGAAAGCACCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
15988629 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
15988670 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
15988711 TTTTAGC-GC-TTTTAACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTT-ACCGAAAGCGCCGCTAATGCTCTGGT
* * *
15988751 TTTTAGCGGCGTTTTACTCG-AAGCACCACTAATGATCTGGT
1 TTTTAGCGGCGTTTTAC-CGAAAGCGCCGCTAATGCTCTGGT
* *
15988792 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGATCT-GT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
15988832 TTTTAGAGGCGTTTTA
1 TTTTAGCGGCGTTTTA
15988848 GTAAAAAACA
Statistics
Matches: 239, Mismatches: 16, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.02
40 52 0.22
41 178 0.74
42 5 0.02
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:15988862 original size:41 final size:40
Alignment explanation
Indices: 15988547--15988887 Score: 285
Period size: 41 Copynumber: 8.4 Consensus size: 40
15988537 GTTCTATGAC
* * * *
15988547 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGAGGCGTTTTA-CTAAAGCACCGCTAATGATCTGGT
* * * * *
15988588 TTTTAGCGGCGTTTCACCGAAAGCACCACTAATGCTCTGGT
1 TTTTAGAGGCGTTTTA-CTAAAGCACCGCTAATGATCTGGT
* * * *
15988629 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGAGGCGTTTTA-CTAAAGCACCGCTAATGATCTGGT
* * * *
15988670 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGAGGCGTTTTA-CTAAAGCACCGCTAATGATCTGGT
* * *
15988711 TTTTAG-CGC-TTTTAACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGAGGCGTTTT-A-CTAAAGCACCGCTAATGATCTGGT
* * *
15988751 TTTTAGCGGCGTTTTACTCGAAGCACCACTAATGATCTGGT
1 TTTTAGAGGCGTTTTACT-AAAGCACCGCTAATGATCTGGT
* *
15988792 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGATCT-GT
1 TTTTAGAGGCGTTTTA-CTAAAGCACCGCTAATGATCTGGT
* * ** *
15988832 TTTTAGAGGCGTTTTAGTAAAAAACACCGCTGTTGCTCT-GT
1 TTTTAGAGGCGTTTTACT--AAAGCACCGCTAATGATCTGGT
*
15988873 TTTTAGAGGCATTTT
1 TTTTAGAGGCGTTTT
15988888 TCTTAAAACG
Statistics
Matches: 267, Mismatches: 26, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
39 5 0.02
40 51 0.19
41 205 0.77
42 6 0.02
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTTAGAGGCGTTTTACTAAAGCACCGCTAATGATCTGGT
Found at i:15988871 original size:163 final size:163
Alignment explanation
Indices: 15988547--15988887 Score: 474
Period size: 163 Copynumber: 2.1 Consensus size: 163
15988537 GTTCTATGAC
*
15988547 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTCACCGAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGTTTTTAGCGGCGTTTCACCGAAAGC
* * *
15988612 ACCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGC
66 ACCACTAATGATCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGATCTGGTTTTTAGA
** * *
15988677 GGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
131 GGCGTTTTACAAAAAACACCGCTAATGCTCT-GT
* *
15988711 TTTTAGC-GC-TTTTAACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGCGTTTTACTCG-AA
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGATCTGGTTTTTAGCGGCGTTTCAC-CGAAA
*
15988773 GCACCACTAATGATCTGGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGATCT-GTTTTTA
64 GCACCACTAATGATCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGATCTGGTTTTTA
* **
15988837 GAGGCGTTTTAGTAAAAAACACCGCTGTTGCTCTGT
129 GAGGCGTTTTA-CAAAAAACACCGCTAATGCTCTGT
* *
15988873 TTTTAGAGGCATTTT
1 TTTTAGCGGCGTTTT
15988888 TCTTAAAACG
Statistics
Matches: 157, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
162 29 0.18
163 115 0.73
164 13 0.08
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (163 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGTTTTTAGCGGCGTTTCACCGAAAGC
ACCACTAATGATCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGATCTGGTTTTTAGA
GGCGTTTTACAAAAAACACCGCTAATGCTCTGT
Found at i:15991577 original size:10 final size:10
Alignment explanation
Indices: 15991558--15991607 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
15991548 AAAAATTCAA
15991558 AAAGATAAAT
1 AAAGATAAAT
15991568 ACAA-ATAAAT
1 A-AAGATAAAT
*
15991578 AAAGATAATT
1 AAAGATAAAT
15991588 AAAGATAAAT
1 AAAGATAAAT
15991598 GAAA-ATAAAT
1 -AAAGATAAAT
15991608 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:15992337 original size:26 final size:28
Alignment explanation
Indices: 15992276--15992337 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 28
15992266 AAAAAGAAAA
15992276 TTTAAAAATAATAAACTAAATAAATAAT
1 TTTAAAAATAATAAACTAAATAAATAAT
* * ** *
15992304 TATCAAAAT-A-AAACTAAATAGTTATT
1 TTTAAAAATAATAAACTAAATAAATAAT
15992330 TTTAAAAA
1 TTTAAAAA
15992338 AATTAAAGCA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
26 19 0.70
27 1 0.04
28 7 0.26
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (28 bp):
TTTAAAAATAATAAACTAAATAAATAAT
Found at i:15995187 original size:31 final size:31
Alignment explanation
Indices: 15995152--15995214 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
15995142 AACACGACCC
15995152 AACAAAAGCACATTATATGCTAACATATCAT
1 AACAAAAGCACATTATATGCTAACATATCAT
15995183 AACAAAAGCACATTATATGCTAACATATCAT
1 AACAAAAGCACATTATATGCTAACATATCAT
15995214 A
1 A
15995215 CTTACTTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.25
Consensus pattern (31 bp):
AACAAAAGCACATTATATGCTAACATATCAT
Found at i:15998841 original size:93 final size:91
Alignment explanation
Indices: 15998654--15998842 Score: 218
Period size: 91 Copynumber: 2.1 Consensus size: 91
15998644 CTTAAGAATG
* * * * *
15998654 AAAAAAGCTTTCAATTTTTTTCAAATAATGCAATTAAGCTTTAGTTTTTTTTTTTTCACTCAATT
1 AAAAAAGCCTTCAAATTTTTTCAAAAAAAGCAATTAACCTTTAGTTTTTTTTTTTTCACTCAATT
* * *
15998719 GGATAATTAAATTTTTAAATTAAATC
66 GGATAATTAAACTGTTAAAATAAATC
*
15998745 AAAAAAGCCTTCAAATTTTTTCAAAAAAAGCAATTAACCTCTT-TTTTTTTTTTCTTTGCACTCA
1 AAAAAAGCCTTCAAATTTTTTCAAAAAAAGCAATTAACCT-TTAGTTTTTTTTT-TTT-CACTCA
* * * **
15998809 ATTGGGTATTTGAACTGTTAAAATGCATC
63 ATTGGATAATTAAACTGTTAAAATAAATC
15998838 AAAAA
1 AAAAA
15998843 GACCCTTTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
91 44 0.54
92 5 0.06
93 32 0.40
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (91 bp):
AAAAAAGCCTTCAAATTTTTTCAAAAAAAGCAATTAACCTTTAGTTTTTTTTTTTTCACTCAATT
GGATAATTAAACTGTTAAAATAAATC
Found at i:15998963 original size:10 final size:10
Alignment explanation
Indices: 15998948--15999057 Score: 52
Period size: 10 Copynumber: 11.4 Consensus size: 10
15998938 GAATGTGGCA
15998948 AAAAAATTAT
1 AAAAAATTAT
15998958 AAAAAA--AT
1 AAAAAATTAT
15998966 -AAAAATTAAT
1 AAAAAATT-AT
*
15998976 AAAAGA-TAT
1 AAAAAATTAT
*
15998985 -AAATATTAT
1 AAAAAATTAT
* **
15998994 TAAATTTTAAT
1 AAAAAATT-AT
*
15999005 AAAAAAATAT
1 AAAAAATTAT
* *
15999015 TAAAAATTGT
1 AAAAAATTAT
* *
15999025 -AAAATTTTT
1 AAAAAATTAT
*
15999034 AAAAAATCAT
1 AAAAAATTAT
*
15999044 AAAAAATTCT
1 AAAAAATTAT
15999054 AAAA
1 AAAA
15999058 TGCATCAAAA
Statistics
Matches: 75, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
7 5 0.07
8 6 0.08
9 12 0.16
10 42 0.56
11 10 0.13
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:15998971 original size:17 final size:18
Alignment explanation
Indices: 15998949--15998993 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
15998939 AATGTGGCAA
15998949 AAAAATTATAAAA-AAAT
1 AAAAATTATAAAAGAAAT
*
15998966 AAAAATTAATAAAAGATAT
1 AAAAATT-ATAAAAGAAAT
*
15998985 AAATATTAT
1 AAAAATTAT
15998994 TAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.29
18 8 0.33
19 9 0.38
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAATTATAAAAGAAAT
Found at i:15999036 original size:29 final size:30
Alignment explanation
Indices: 15998995--15999058 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 30
15998985 AAATATTATT
* *
15998995 AAATTTTAATAAAAAAAT-ATTAAAAATTGTA
1 AAATTTT-AT-AAAAAATCATAAAAAATTCTA
15999026 AAATTTT-TAAAAAATCATAAAAAATTCTA
1 AAATTTTATAAAAAATCATAAAAAATTCTA
15999055 AAAT
1 AAAT
15999059 GCATCAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.23
29 16 0.53
31 7 0.23
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (30 bp):
AAATTTTATAAAAAATCATAAAAAATTCTA
Found at i:15999361 original size:20 final size:19
Alignment explanation
Indices: 15999338--15999391 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
15999328 TTTCTATATA
*
15999338 TTTTTTAAAATTTTACACT
1 TTTTTTAAAATTTTACAAT
15999357 TTTTTATAAAATTTTACAAT
1 TTTTT-TAAAATTTTACAAT
15999377 TTTTTTATAAATTTT
1 TTTTTTA-AAATTTT
15999392 TTACGAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 7 0.22
20 25 0.78
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTTAAAATTTTACAAT
Found at i:15999421 original size:19 final size:19
Alignment explanation
Indices: 15999379--15999432 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
15999369 TTTACAATTT
*
15999379 TTTTATAAATTTTTTACGAG
1 TTTTAT-AATTTTTTACGAA
* *
15999399 TTTTATAATTTTTTTCTAA
1 TTTTATAATTTTTTACGAA
15999418 TTTTA-AATATTTTTA
1 TTTTATAAT-TTTTTA
15999433 TTAAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 3 0.10
19 20 0.69
20 6 0.21
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTTACGAA
Found at i:16001503 original size:17 final size:17
Alignment explanation
Indices: 16001483--16001523 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
16001473 ATGGTGTGGT
16001483 ATGAACTGTTAATTT-GC
1 ATGAACTGTT-ATTTGGC
16001500 ATGAACTGTTATTTGGC
1 ATGAACTGTTATTTGGC
16001517 ATGAACT
1 ATGAACT
16001524 TATATTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (17 bp):
ATGAACTGTTATTTGGC
Found at i:16005254 original size:30 final size:31
Alignment explanation
Indices: 16005193--16005266 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
16005183 TTTAATTAGT
* *
16005193 AATAAT-AAAATTATATTTTGATCTCTCAAA
1 AATAATAAAAATTATATTTTAATATCTCAAA
*
16005223 AATAATAAAAATT-TATTTTAATTATCTAAAA
1 AATAATAAAAATTATATTTTAA-TATCTCAAA
16005254 ATTATAATAAAAA
1 A--ATAATAAAAA
16005267 ATAGAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 13 0.35
31 14 0.38
33 10 0.27
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (31 bp):
AATAATAAAAATTATATTTTAATATCTCAAA
Found at i:16005947 original size:159 final size:159
Alignment explanation
Indices: 16005641--16005950 Score: 514
Period size: 159 Copynumber: 1.9 Consensus size: 159
16005631 ATACCCTCAT
*
16005641 TCCCAAAGCCTAGGGCGCTTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTG
1 TCCCAAAGCCTAGGGCGCTTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTA
*
16005706 CCCCCTCTGCCAAGCATTCCCTCAGTCCCCAGAATCCCAACTGCAATTCCCTCTATTACTTTATT
66 CCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTCTATTACTTTATT
*
16005771 TTCTCCTCCATTGCCATCTTTCCTTAATC
131 TTCTCCACCATTGCCATCTTTCCTTAATC
* *
16005800 TCCCAAAGCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGACCAAAGGCCACACTA
1 TCCCAAAGCCTAGGGCGCTTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTA
* * *
16005865 CCCCCTCTGCCAAGCATTCCCTCATTCCCCACAATCCCAACTGCAATTCCCTCTATTCCTTTCTC
66 CCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTCTATTACTTTAT-
* *
16005930 TTT-TCCACCTTTTCCATCTTT
130 TTTCTCCACCATTGCCATCTTT
16005951 TCCTCCACTT
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
159 137 0.98
160 3 0.02
ACGTcount: A:0.21, C:0.40, G:0.10, T:0.29
Consensus pattern (159 bp):
TCCCAAAGCCTAGGGCGCTTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTA
CCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTCTATTACTTTATT
TTCTCCACCATTGCCATCTTTCCTTAATC
Found at i:16006055 original size:132 final size:132
Alignment explanation
Indices: 16005818--16006082 Score: 449
Period size: 132 Copynumber: 2.0 Consensus size: 132
16005808 CCTGGGGCGC
*
16005818 TTCCTCCACTTCCTACCATATTTCCAAGTGGACCAAAGGCCACACTACCCCCTCTGCCAAGCATT
1 TTCCTCCACTTCCTACCATATTTCCAAGTGGACCAAAGGCCACACTACCCCCTCTGCCAAACATT
* * * * *
16005883 CCCTCATTCCCCACAATCCCAACTGCAATTCCCTCTATTCCTTTCTCTTTTCCACCTTTTCCATC
66 CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTCCTTTCTCTTCTCCACCATTGCCATC
16005948 TT
131 TT
* * *
16005950 TTCCTCCACTTCCTACCGTATTTCCAAGTGGACCGAAGGCCACACTGCCCCCTCTGCCAAACATT
1 TTCCTCCACTTCCTACCATATTTCCAAGTGGACCAAAGGCCACACTACCCCCTCTGCCAAACATT
16006015 CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTCCTTTCTCTTCTCCACCATTGCCATC
66 CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTCCTTTCTCTTCTCCACCATTGCCATC
16006080 TT
131 TT
16006082 T
1 T
16006083 CCCTAATCTC
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 124 1.00
ACGTcount: A:0.21, C:0.42, G:0.07, T:0.31
Consensus pattern (132 bp):
TTCCTCCACTTCCTACCATATTTCCAAGTGGACCAAAGGCCACACTACCCCCTCTGCCAAACATT
CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTCCTTTCTCTTCTCCACCATTGCCATC
TT
Found at i:16006192 original size:291 final size:291
Alignment explanation
Indices: 16005659--16006218 Score: 951
Period size: 291 Copynumber: 1.9 Consensus size: 291
16005649 CCTAGGGCGC
*
16005659 TTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTGCCCCCTCTGCCAAGCATT
1 TTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTGCCCCCTCTGCCAAACATT
* * * * *
16005724 CCCTCAGTCCCCAGAATCCCAACTGCAATTCCCTCTATTACTTTATTTTCTCCTCCATTGCCATC
66 CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTACTTTATCTTCTCCACCATTGCCATC
* *
16005789 TTTCCTTAATCTCCCAAAGCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGACCAA
131 TTTCCCTAATCTCCCAAACCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGACCAA
*
16005854 AGGCCACACTACCCCCTCTGCCAAGCATTCCCTCATTCCCCACAATCCCAACTGCAATTCCCTCT
196 AGGCCACACTACCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTCT
16005919 ATTCCTTTCTCTTTTCCACCTTTTCCATCTT
261 ATTCCTTTCTCTTTTCCACCTTTTCCATCTT
*
16005950 TTCCTCCACTTCCTACC-GTATTTCCAAGTGGACCGAAGGCCACACTGCCCCCTCTGCCAAACAT
1 TTCCTCCACTTCCTACCAG-ATTTCCAAGTGGACCAAAGGCCACACTGCCCCCTCTGCCAAACAT
* *
16006014 TCCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTCCTTTCTCTTCTCCACCATTGCCAT
65 TCCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTACTTTATCTTCTCCACCATTGCCAT
* *
16006079 CTTTCCCTAATCTCCCAAACCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGATCG
130 CTTTCCCTAATCTCCCAAACCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGACCA
* * *
16006144 AGGGCCACACTACCCCCTCTGCCAAGCATTCCCTCAGTCCCTACAATCCCAACTGTAATTCCCTC
195 AAGGCCACACTACCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTC
16006209 TATTCCTTTC
260 TATTCCTTTC
16006219 GTTTCTCCAC
Statistics
Matches: 251, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
290 1 0.00
291 250 1.00
ACGTcount: A:0.21, C:0.41, G:0.09, T:0.29
Consensus pattern (291 bp):
TTCCTCCACTTCCTACCAGATTTCCAAGTGGACCAAAGGCCACACTGCCCCCTCTGCCAAACATT
CCCTCAATCCCCACAATCCCAACTACAATTCCCTCTATTACTTTATCTTCTCCACCATTGCCATC
TTTCCCTAATCTCCCAAACCCTGGGGCGCTTCCTCCACTTCCTACCATATTTCCAAGTGGACCAA
AGGCCACACTACCCCCTCTGCCAAGCATTCCCTCAGTCCCCACAATCCCAACTGCAATTCCCTCT
ATTCCTTTCTCTTTTCCACCTTTTCCATCTT
Found at i:16008836 original size:32 final size:31
Alignment explanation
Indices: 16008766--16008838 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
16008756 CATTAAATTC
* * *
16008766 CAACCAAATACAACAAATATAGTATAAAATG
1 CAACCAAAAACAACAAATATAGCATAAAATA
* * *
16008797 CAGCCAAAAACAGCAAATTTAGCATAAAAATA
1 CAACCAAAAACAACAAATATAGCAT-AAAATA
16008829 CAACCAAAAA
1 CAACCAAAAA
16008839 AATTAATTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 20 0.59
32 14 0.41
ACGTcount: A:0.59, C:0.19, G:0.07, T:0.15
Consensus pattern (31 bp):
CAACCAAAAACAACAAATATAGCATAAAATA
Found at i:16009599 original size:46 final size:46
Alignment explanation
Indices: 16009541--16009635 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
16009531 TGATGAATTG
*
16009541 AATTAAACAATTATAATTAAAGATTATAAATATTTAGAATAAATCA
1 AATTAAAAAATTATAATTAAAGATTATAAATATTTAGAATAAATCA
*
16009587 AATTAAAAAATTATCATTAAAGATTATAAATATTTAGAATAAATCA
1 AATTAAAAAATTATAATTAAAGATTATAAATATTTAGAATAAATCA
16009633 AAT
1 AAT
16009636 ATTATTAAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (46 bp):
AATTAAAAAATTATAATTAAAGATTATAAATATTTAGAATAAATCA
Found at i:16009819 original size:16 final size:17
Alignment explanation
Indices: 16009782--16009821 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
16009772 AGAATATTAT
*
16009782 TTAATAATTGAAAGTTA
1 TTAATAATTGAAAGTAA
*
16009799 TTAATATTTGAAAG-AA
1 TTAATAATTGAAAGTAA
16009815 TTAATAA
1 TTAATAA
16009822 ATTCATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (17 bp):
TTAATAATTGAAAGTAA
Found at i:16013439 original size:71 final size:72
Alignment explanation
Indices: 16013318--16013452 Score: 170
Period size: 71 Copynumber: 1.9 Consensus size: 72
16013308 GGCTTAGTTA
*
16013318 GAGAAAGGCTGAGAAAGAAAAGGGAATTGGGAAAGAAAAGGGAAT-CGGGGGAGAG-AATAAAAG
1 GAGAAAGGCTGAGAAAGAAAAGGGAATCGGGAAAG-AAAGGGAATGCGGGGGAGAGAAATAAAAG
16013381 TACAGGCT
65 TACAGGCT
* * *
16013389 GAGAATGGCTGAGAAAG-AGAGTGGAATCGGGAAAG-AAGGGAATTGGGGGGGGAGAGAAATAAA
1 GAGAAAGGCTGAGAAAGAAAAG-GGAATCGGGAAAGAAAGGGAA-T-GCGGGGGAGAGAAATAAA
16013452 A
63 A
16013453 CGGCGTCGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
69 7 0.13
70 4 0.07
71 28 0.51
72 9 0.16
73 7 0.13
ACGTcount: A:0.44, C:0.04, G:0.41, T:0.10
Consensus pattern (72 bp):
GAGAAAGGCTGAGAAAGAAAAGGGAATCGGGAAAGAAAGGGAATGCGGGGGAGAGAAATAAAAGT
ACAGGCT
Found at i:16013600 original size:38 final size:40
Alignment explanation
Indices: 16013525--16013639 Score: 171
Period size: 38 Copynumber: 2.9 Consensus size: 40
16013515 TTTAAAATAA
*
16013525 ATTACTTTTTGCGGCGTTTTTATCATAAATGCCGCTATTG
1 ATTACCTTTTGCGGCGTTTTTATCATAAATGCCGCTATTG
16013565 ATTACCTTTTGCGGCG-TTTTAT-ATAAATGCCGCTATTG
1 ATTACCTTTTGCGGCGTTTTTATCATAAATGCCGCTATTG
* ** *
16013603 CTTGTCTTTTGCGGCGTTTTTATCATAAACGCCGCTA
1 ATTACCTTTTGCGGCGTTTTTATCATAAATGCCGCTA
16013640 ATTTTTGACT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 29 0.43
39 12 0.18
40 27 0.40
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (40 bp):
ATTACCTTTTGCGGCGTTTTTATCATAAATGCCGCTATTG
Found at i:16013652 original size:40 final size:40
Alignment explanation
Indices: 16013531--16013652 Score: 162
Period size: 38 Copynumber: 3.1 Consensus size: 40
16013521 ATAAATTACT
16013531 TTTTGCGGCGTTTTTATCATAAATGCCGCTATTGATT-ACC
1 TTTTGCGGCGTTTTTATCATAAATGCCGCTATTGATTGA-C
* *
16013571 TTTTGCGGCG-TTTTAT-ATAAATGCCGCTATTGCTTGTC
1 TTTTGCGGCGTTTTTATCATAAATGCCGCTATTGATTGAC
* *
16013609 TTTTGCGGCGTTTTTATCATAAACGCCGCTAATT-TTTGAC
1 TTTTGCGGCGTTTTTATCATAAATGCCGCT-ATTGATTGAC
16013649 TTTT
1 TTTT
16013653 TTATAATTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
38 29 0.40
39 12 0.16
40 29 0.40
41 3 0.04
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (40 bp):
TTTTGCGGCGTTTTTATCATAAATGCCGCTATTGATTGAC
Found at i:16013675 original size:22 final size:21
Alignment explanation
Indices: 16013650--16013696 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
16013640 ATTTTTGACT
16013650 TTTTTATAAT-TTTTATATTGAA
1 TTTTTAT-ATCTTTTATATT-AA
16013672 TTTTTATATCTTTTATATTAA
1 TTTTTATATCTTTTATATTAA
16013693 TTTT
1 TTTT
16013697 AAATAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (21 bp):
TTTTTATATCTTTTATATTAA
Found at i:16013707 original size:22 final size:22
Alignment explanation
Indices: 16013650--16013707 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
16013640 ATTTTTGACT
* *
16013650 TTTTTATAATTTTTATATTGAA
1 TTTTAATAAATTTTATATTGAA
* **
16013672 TTTTTATATCTTTTATATT-AA
1 TTTTAATAAATTTTATATTGAA
16013693 TTTTAAATAAATTTT
1 TTTT-AATAAATTTT
16013708 TTTAAAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTAATAAATTTTATATTGAA
Found at i:16014279 original size:14 final size:14
Alignment explanation
Indices: 16014261--16014327 Score: 71
Period size: 14 Copynumber: 4.7 Consensus size: 14
16014251 CCAGAAAAGT
*
16014261 AAATCATTTTCCAT
1 AAATCATTTTCCAG
*
16014275 AAATCATTTTTCAAG
1 AAATCA-TTTTCCAG
* *
16014290 AAATTATTTTCCGG
1 AAATCATTTTCCAG
*
16014304 AAATCATTTTCCAA
1 AAATCATTTTCCAG
*
16014318 AAAACATTTT
1 AAATCATTTT
16014328 ACCTGCAAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
14 32 0.74
15 11 0.26
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.40
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:16014601 original size:7 final size:7
Alignment explanation
Indices: 16014449--16014601 Score: 67
Period size: 7 Copynumber: 21.6 Consensus size: 7
16014439 TTTTATCCCC
*
16014449 TAAACCC
1 TAAACCA
*
16014456 TAAATCA
1 TAAACCA
16014463 TACAA-CA
1 TA-AACCA
* *
16014470 TAACCCT
1 TAAACCA
16014477 TAAATCCA
1 TAAA-CCA
*
16014485 TAACCCA
1 TAAACCA
* *
16014492 TAACCCC
1 TAAACCA
*
16014499 TAACCCA
1 TAAACCA
* *
16014506 TAACCCC
1 TAAACCA
16014513 TAACACC-
1 TAA-ACCA
*
16014520 TAAACCT
1 TAAACCA
*
16014527 TAAACCC
1 TAAACCA
* * *
16014534 CAACCCT
1 TAAACCA
16014541 TAAACCA
1 TAAACCA
**
16014548 TAAACTG
1 TAAACCA
16014555 TAAACCA
1 TAAACCA
*
16014562 TAATCCA
1 TAAACCA
16014569 TAAACCCA
1 TAAA-CCA
*
16014577 TAATCCA
1 TAAACCA
*
16014584 TAATCCA
1 TAAACCA
*
16014591 TAAACCT
1 TAAACCA
16014598 TAAA
1 TAAA
16014602 ATAGTAACTC
Statistics
Matches: 113, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
6 4 0.04
7 94 0.83
8 15 0.13
ACGTcount: A:0.44, C:0.35, G:0.01, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:16014909 original size:24 final size:24
Alignment explanation
Indices: 16014882--16014930 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
16014872 TTAAAATAAC
*
16014882 AATTAATTTTTATATAGACTTTTA
1 AATTAATTTTTATATAAACTTTTA
16014906 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
16014930 A
1 A
16014931 TAAATATACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:16015604 original size:41 final size:41
Alignment explanation
Indices: 16015547--16016043 Score: 755
Period size: 41 Copynumber: 12.1 Consensus size: 41
16015537 AGTTATATGA
*
16015547 CTTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
16015588 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTACTGCTATGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
16015629 ATTTTAGCGGCGTTTTACCAAAAGCGCCGCTACTGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
*
16015670 CTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
*
16015711 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTACTGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
16015752 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
16015793 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
16015834 CCTTTAGCGGCGTTTTACCAAAAGCGTCGCTAAAGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
16015875 CCTTTAGCGGCGTTTTACCAAAAGCGTCGCTAAAGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * **
16015916 CCTTTAGCGGCGTTTTACCAAAAGCGTCGCTAAAACTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
16015957 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
*** *
16015998 -TTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTATTGCTCTGT
1 CTTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGT
*
16016038 GTTTTA
1 CTTTTA
16016044 CAATTTTTGC
Statistics
Matches: 429, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
40 27 0.06
41 402 0.94
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (41 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:16018382 original size:10 final size:10
Alignment explanation
Indices: 16018363--16018422 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
16018353 TGAAATTCCA
16018363 AAAGATAAAT
1 AAAGATAAAT
16018373 ACAA-ATAAAT
1 A-AAGATAAAT
*
16018383 AAAGATAATT
1 AAAGATAAAT
16018393 AAAGATAAAT
1 AAAGATAAAT
16018403 AAAGATAAAT
1 AAAGATAAAT
16018413 GAAA-ATAAAT
1 -AAAGATAAAT
16018423 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:16019056 original size:10 final size:9
Alignment explanation
Indices: 16019039--16019064 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
16019029 TATTAATATG
16019039 TCTTTTTTT
1 TCTTTTTTT
16019048 TCTTTTTTT
1 TCTTTTTTT
16019057 TCTTTTTT
1 TCTTTTTT
16019065 ATTAGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:16019252 original size:96 final size:97
Alignment explanation
Indices: 16019087--16019268 Score: 258
Period size: 96 Copynumber: 1.9 Consensus size: 97
16019077 ATTTTATTTA
* * ** *
16019087 TTTATTTTTACTTAGGAATATATTTAACCTTTTGACGCGAAGAGAGATGACAGCCAAGAACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACCCCA
* *
16019152 CCCCGGTTACTTAGCCCAACATACTCCTAATT
66 CCCCGATTACTCAGCCCAACATACTCCTAATT
* * * *
16019184 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGGCACGAAGAGAGATGATAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACCCCA
16019248 CCCCGATTACTCAGCCCAACA
66 CCCCGATTACTCAGCCCAACA
16019269 CATTCTTAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
96 65 0.88
97 9 0.12
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACCCCA
CCCCGATTACTCAGCCCAACATACTCCTAATT
Found at i:16021202 original size:48 final size:46
Alignment explanation
Indices: 16021146--16021271 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 46
16021136 TAAGAGTTGT
*
16021146 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCATGCATAAATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCA--CAGAAATGAGA
* * * *
16021194 GCTAGTGTAAGACCATGTCTGGGATATGGCATTGGCACAGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATTGGCACAGAAATGAGA
* *
16021242 GCCAGAGTAAGACATGTCTAGGACATGCAT
1 GCTAGTGTAAGACATGTCTAGGACATGCAT
16021272 CAGCCTCAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 4 0.06
47 12 0.18
48 30 0.45
49 12 0.18
50 9 0.13
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATTGGCACAGAAATGAGA
Found at i:16021363 original size:44 final size:45
Alignment explanation
Indices: 16021105--16021363 Score: 157
Period size: 44 Copynumber: 5.6 Consensus size: 45
16021095 TTTGTACGCC
* * * * *
16021105 AGTGTAAGACGTGTCTGGGATACGCTTCAGCTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGTGCT
* * * * * * *
16021149 AGTGTAAGACATGTCTAGGACATGCATTGGCATGCATAAATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TACA-GAGT-TGTGCT
* * * *
16021197 AGTGTAAGACCATGTCTGGGATATGGCATTGGC-ACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGAG-T-TGTGCT
* * * * * *
16021245 AGAGTAAGACATGTCTAGGACATGCATCAGCCTCAACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCT--ACAGAGTTGTGCT
** * * *
16021292 AGTGTAAGATGTGTCTGGAATAAGCATCGGCTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGTGCT
16021336 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
16021364 AGCACGCATA
Statistics
Matches: 160, Mismatches: 43, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
43 5 0.03
44 50 0.31
45 1 0.01
46 8 0.05
47 41 0.26
48 29 0.18
49 12 0.08
50 14 0.09
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGTGCT
Found at i:16021363 original size:91 final size:92
Alignment explanation
Indices: 16021102--16021393 Score: 322
Period size: 91 Copynumber: 3.1 Consensus size: 92
16021092 TGATTTGTAC
* * *
16021102 GCCAGTGTAAGACGTGTCTGGGATACGCTTCAGCTAAGAGTTGTGCTAGTGTAAGACATGTCTAG
1 GCCAGTGTAAGACGTGTCTGGGATAAGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTAG
**
16021167 GACATGCATTGGCATGCATAAATGAGA
66 GACATGCATCAGCATGCATAAATGAGA
* * * * * * *
16021194 GCTAGTGTAAGACCATGTCTGGGATATGGCATTGGC-ACAGAGATGAGTGCCAGAGTAAGACATG
1 GCCAGTGTAAGA-CGTGTCTGGGATA-AGCATCGGCTA-AGAG-T-TGTGCTAGTGTAAGACATG
* *
16021258 TCTAGGACATGCATCAGCCT-CA-ACAGA-GATA
61 TCTAGGACATGCATCAGCATGCATA-A-ATGAGA
* * *
16021289 GCCAGTGTAAGATGTGTCTGGAATAAGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGG
1 GCCAGTGTAAGACGTGTCTGGGATAAGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTAG
* *
16021354 GACATGCATCAGCACGCATATATGAGA
66 GACATGCATCAGCATGCATAAATGAGA
16021381 GCCAGTGTAAGAC
1 GCCAGTGTAAGAC
16021394 CATGTCTAGG
Statistics
Matches: 161, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
91 34 0.21
92 29 0.18
93 25 0.16
94 21 0.13
95 18 0.11
96 34 0.21
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (92 bp):
GCCAGTGTAAGACGTGTCTGGGATAAGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTAG
GACATGCATCAGCATGCATAAATGAGA
Found at i:16022785 original size:10 final size:10
Alignment explanation
Indices: 16022772--16022831 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
16022762 AATATCTGAA
16022772 AATAATAAAT
1 AATAATAAAT
*
16022782 AATAAAATAAT
1 AATAATA-AAT
*
16022793 AAGAATAAAT
1 AATAATAAAT
16022803 AAATAA-AAAT
1 -AATAATAAAT
16022813 AA-AATAAAAT
1 AATAAT-AAAT
*
16022823 AAAAATAAA
1 AATAATAAA
16022832 AATTGGGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 2 0.05
9 2 0.05
10 22 0.54
11 15 0.37
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.22
Consensus pattern (10 bp):
AATAATAAAT
Found at i:16022790 original size:15 final size:15
Alignment explanation
Indices: 16022770--16022832 Score: 78
Period size: 15 Copynumber: 4.3 Consensus size: 15
16022760 TTAATATCTG
16022770 AAAAT-AATAAATAAT
1 AAAATAAATAAA-AAT
*
16022785 AAAAT-AATAAGAAT
1 AAAATAAATAAAAAT
16022799 -AAATAAATAAAAAT
1 AAAATAAATAAAAAT
16022813 AAAATAAAATAAAAAT
1 AAAAT-AAATAAAAAT
16022829 AAAA
1 AAAA
16022833 ATTGGGTTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
13 4 0.09
14 11 0.26
15 14 0.33
16 14 0.33
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAATAAATAAAAAT
Found at i:16022802 original size:28 final size:26
Alignment explanation
Indices: 16022779--16022834 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 26
16022769 GAAAATAATA
16022779 AATAATAAAATAATAAGAATAAATAAATA
1 AATAATAAAATAA-AAGAA-AAAT-AATA
*
16022808 AA-AATAAAATAAAATAAAAATAA-A
1 AATAATAAAATAAAAGAAAAATAATA
16022832 AAT
1 AAT
16022835 TGGGTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
24 3 0.12
25 2 0.08
26 4 0.16
27 4 0.16
28 10 0.40
29 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (26 bp):
AATAATAAAATAAAAGAAAAATAATA
Found at i:16022819 original size:11 final size:11
Alignment explanation
Indices: 16022775--16022832 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
16022765 ATCTGAAAAT
16022775 AATAAATAATAA
1 AATAAA-AATAA
16022787 AATAATAAGA-ATA
1 AATAA-AA-ATA-A
*
16022800 AATAAATA-AA
1 AATAAAAATAA
16022810 AAT-AAAATAA
1 AATAAAAATAA
16022820 AATAAAAATAA
1 AATAAAAATAA
16022831 AA
1 AA
16022833 ATTGGGTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 3 0.08
10 9 0.23
11 11 0.28
12 8 0.21
13 8 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:16037460 original size:25 final size:25
Alignment explanation
Indices: 16037422--16037516 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
16037412 AGGAAGTGCT
* *
16037422 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
16037447 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
16037472 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
16037497 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
16037517 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:16037529 original size:24 final size:25
Alignment explanation
Indices: 16037438--16037529 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 25
16037428 GCTATGCCCT
* *
16037438 AGTTTACCGAAAAG-GGCTTTGCCCC
1 AGTTTATC-AAAAGAGGCTTTACCCC
* *
16037463 AGTTTACCGAAAAG-GGCTTTGCCCC
1 AGTTTATC-AAAAGAGGCTTTACCCC
16037488 AGTTTATCAAAA-AGGGCTTTACCCC
1 AGTTTATCAAAAGA-GGCTTTACCCC
*
16037513 AG-TTATTAAAAGAGGCT
1 AGTTTATCAAAAGAGGCT
16037530 AGGCCTCCAG
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
24 16 0.26
25 45 0.74
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
AGTTTATCAAAAGAGGCTTTACCCC
Found at i:16037540 original size:50 final size:50
Alignment explanation
Indices: 16037420--16037541 Score: 140
Period size: 50 Copynumber: 2.4 Consensus size: 50
16037410 GGAGGAAGTG
* * *
16037420 CTAAAAGGGCTATGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
* * *
16037470 CGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTACCCCAG-TTA-
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
* *
16037518 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
16037542 ATATGATAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 5 0.08
49 10 0.17
50 45 0.75
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
Found at i:16037723 original size:42 final size:42
Alignment explanation
Indices: 16037664--16037755 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
16037654 TAGTCTCCCC
* *
16037664 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
*
16037706 AAATGGGCTTGCATACATTCAATGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
16037748 AAATGGGC
1 AAATGGGC
16037756 CTATAGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
Found at i:16041640 original size:46 final size:45
Alignment explanation
Indices: 16041541--16041632 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 45
16041531 AACCTGCCCA
* * *
16041541 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACC
*
16041587 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACC
16041631 AT
1 AT
16041633 CCTAGTGACA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 9 0.21
46 33 0.79
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (45 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACC
Found at i:16042075 original size:30 final size:30
Alignment explanation
Indices: 16042040--16042096 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
16042030 TTAACTCAAA
16042040 TTTTGCAAAATTACAATTTTACCCCTAAAC
1 TTTTGCAAAATTACAATTTTACCCCTAAAC
* * * *
16042070 TTTTGCATATTTACATTTTTGCCCCTA
1 TTTTGCAAAATTACAATTTTACCCCTA
16042097 GGCTCGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTACCCCTAAAC
Found at i:16049089 original size:47 final size:47
Alignment explanation
Indices: 16049021--16049188 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
16049011 ATCCATAAGT
16049021 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
16049068 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATC-CATAA
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC--AC
*
16049112 GTGACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 G-AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
16049160 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
16049189 CATTCGCATC
Statistics
Matches: 104, Mismatches: 7, Indels: 20
0.79 0.05 0.15
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 3 0.03
45 27 0.26
47 55 0.53
48 3 0.03
49 5 0.05
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:16049155 original size:92 final size:93
Alignment explanation
Indices: 16048974--16049237 Score: 469
Period size: 92 Copynumber: 2.8 Consensus size: 93
16048964 CGCCCATAAG
* *
16048974 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
16049038 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
16049067 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTG-ACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
16049131 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
16049159 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
16049224 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
16049238 TCAATCATCC
Statistics
Matches: 165, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
92 93 0.56
93 72 0.44
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:16060237 original size:10 final size:10
Alignment explanation
Indices: 16060218--16060267 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
16060208 TGAAATTCTA
16060218 AAAGATAAAT
1 AAAGATAAAT
16060228 ACAA-ATAAAT
1 A-AAGATAAAT
16060238 AAAGATAAAT
1 AAAGATAAAT
16060248 AAAGATAAAT
1 AAAGATAAAT
16060258 GAAA-ATAAAT
1 -AAAGATAAAT
16060268 CTTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:16060902 original size:23 final size:23
Alignment explanation
Indices: 16060876--16060974 Score: 76
Period size: 23 Copynumber: 4.3 Consensus size: 23
16060866 CGCATACGAC
16060876 ATGTGAT-AGAGTTCACATACATT
1 ATGTGATAAG-GTTCACATACATT
* * * * *
16060899 ATGTAATAGGGTTTACTTACATC
1 ATGTGATAAGGTTCACATACATT
* *
16060922 ATGTAATAAGGTTCGCATAC-TT
1 ATGTGATAAGGTTCACATACATT
* * *
16060944 CCTATGATAAGGTTCACATACTTT
1 -ATGTGATAAGGTTCACATACATT
16060968 ATGTGAT
1 ATGTGAT
16060975 CAGTTTCGCA
Statistics
Matches: 57, Mismatches: 16, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
22 1 0.02
23 53 0.93
24 3 0.05
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (23 bp):
ATGTGATAAGGTTCACATACATT
Found at i:16063167 original size:21 final size:22
Alignment explanation
Indices: 16063142--16063243 Score: 77
Period size: 21 Copynumber: 4.5 Consensus size: 22
16063132 TTTATCAAAT
16063142 TAAAACCTTAAAACCT-AACCC
1 TAAAACCTTAAAACCTAAACCC
*
16063163 TAAAACCTTAAGAAATCTAAACAACC
1 TAAAACCTT-A-AAACCTAAAC--CC
* *
16063189 TAAAACCATAATAA-CAAAACCC
1 TAAAACCTTAA-AACCTAAACCC
* *
16063211 TAAAACCCTATTAA--TAAACCC
1 TAAAACCTTA-AAACCTAAACCC
16063232 TAAAACCTTAAA
1 TAAAACCTTAAA
16063244 TTTTATAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
20 1 0.02
21 24 0.36
22 14 0.21
23 5 0.08
24 9 0.14
25 3 0.05
26 10 0.15
ACGTcount: A:0.53, C:0.26, G:0.01, T:0.20
Consensus pattern (22 bp):
TAAAACCTTAAAACCTAAACCC
Found at i:16063213 original size:22 final size:21
Alignment explanation
Indices: 16063187--16063238 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
16063177 ATCTAAACAA
16063187 CCTAAAACCATAATAACAAAAC
1 CCTAAAACCATAATAA-AAAAC
* * *
16063209 CCTAAAACCCTATTAATAAAC
1 CCTAAAACCATAATAAAAAAC
16063230 CCTAAAACC
1 CCTAAAACC
16063239 TTAAATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (21 bp):
CCTAAAACCATAATAAAAAAC
Found at i:16063375 original size:29 final size:29
Alignment explanation
Indices: 16063339--16063395 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
16063329 GACCCATTCC
* *
16063339 TGTATTTTTTCAAAAAACGGC-TTATTTT
1 TGTATTTTTTAAAAAAAAGGCTTTATTTT
16063367 TGTATTTTTTTAAAAAAAAGGCTTTATTT
1 TGTA-TTTTTTAAAAAAAAGGCTTTATTT
16063396 GGTAATTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.16
29 15 0.60
30 6 0.24
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.51
Consensus pattern (29 bp):
TGTATTTTTTAAAAAAAAGGCTTTATTTT
Found at i:16063765 original size:17 final size:18
Alignment explanation
Indices: 16063743--16063783 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
16063733 TTTAAGTTTA
16063743 TAATTTTT-TATATTATG
1 TAATTTTTATATATTATG
*
16063760 TTATTTTTATATATTATG
1 TAATTTTTATATATTATG
16063778 TAATTT
1 TAATTT
16063784 ATAACATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TAATTTTTATATATTATG
Found at i:16064031 original size:78 final size:77
Alignment explanation
Indices: 16063940--16064099 Score: 189
Period size: 80 Copynumber: 2.0 Consensus size: 77
16063930 ATATATTTTT
* * * *
16063940 AAAAATTTTAAAATAATATAGATGAACCTAAAAATGGACTTAA-T-TAGTCTTTTGCAAATATAG
1 AAAAATTTTAAAATAATATAAATAAACCT-AAAATAGACTAAACTCTA-TCTTTTGCAAATATAG
*
16064003 ATAAATTTTGACAA
64 ACAAATTTTGACAA
* *
16064017 AAAATATTTTAAAATAATATAAATAAATCTAAAATAGACTAAATCGTCTATCTTTTGTAAATATA
1 AAAA-ATTTTAAAATAATATAAATAAACCTAAAATAGACTAAA-C-TCTATCTTTTGCAAATATA
*
16064082 GACGAATTTTGACAA
63 GACAAATTTTGACAA
16064097 AAA
1 AAA
16064100 TCTTTGCAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
77 15 0.21
78 22 0.31
80 31 0.44
81 2 0.03
ACGTcount: A:0.49, C:0.08, G:0.09, T:0.34
Consensus pattern (77 bp):
AAAAATTTTAAAATAATATAAATAAACCTAAAATAGACTAAACTCTATCTTTTGCAAATATAGAC
AAATTTTGACAA
Found at i:16075160 original size:16 final size:16
Alignment explanation
Indices: 16075139--16075178 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
16075129 AATATATATC
**
16075139 ATATTTAATGTAAATA
1 ATATTTAAAATAAATA
16075155 ATATTTAAAATAAATA
1 ATATTTAAAATAAATA
16075171 ATAATTTA
1 AT-ATTTA
16075179 TGAATAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
ATATTTAAAATAAATA
Found at i:16078058 original size:22 final size:22
Alignment explanation
Indices: 16078012--16078058 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
16078002 CATCCATGGA
** *
16078012 AAATTAGAAAAAGAAAAGGACT
1 AAATTAGAAAAAGAAAAAAAAT
*
16078034 AAATTGGAAAAAGAAAAAAAAT
1 AAATTAGAAAAAGAAAAAAAAT
16078056 AAA
1 AAA
16078059 AGATAATATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.02, G:0.15, T:0.13
Consensus pattern (22 bp):
AAATTAGAAAAAGAAAAAAAAT
Found at i:16078579 original size:21 final size:21
Alignment explanation
Indices: 16078555--16078594 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16078545 GCCTAGGATG
*
16078555 TGAATTGAATTAAATTGATAA
1 TGAAATGAATTAAATTGATAA
*
16078576 TGAAATGGATTAAATTGAT
1 TGAAATGAATTAAATTGAT
16078595 GTTAAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (21 bp):
TGAAATGAATTAAATTGATAA
Found at i:16079099 original size:25 final size:24
Alignment explanation
Indices: 16079071--16079121 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
16079061 ACAAATGCAA
16079071 CTCTTTATAAGCATCTTGATATAGG
1 CTCTTTATAAGCATCTTGATAT-GG
* * *
16079096 CTCTTTTTGAGCTTCTTGATATGG
1 CTCTTTATAAGCATCTTGATATGG
16079120 CT
1 CT
16079122 TGCTTGAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.45
Consensus pattern (24 bp):
CTCTTTATAAGCATCTTGATATGG
Found at i:16079133 original size:23 final size:25
Alignment explanation
Indices: 16079084--16079133 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 25
16079074 TTTATAAGCA
** *
16079084 TCTTGATATAGGCTCTTTTTGAGCT
1 TCTTGATATAGGCTCTGCTTGAACT
16079109 TCTTGATAT-GGCT-TGCTTGAACT
1 TCTTGATATAGGCTCTGCTTGAACT
16079132 TC
1 TC
16079134 CTGTTATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 9 0.41
24 4 0.18
25 9 0.41
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.46
Consensus pattern (25 bp):
TCTTGATATAGGCTCTGCTTGAACT
Found at i:16079977 original size:18 final size:18
Alignment explanation
Indices: 16079954--16080042 Score: 81
Period size: 18 Copynumber: 4.9 Consensus size: 18
16079944 TCATCAATAT
16079954 TAATCAGTTATTCAGTAA
1 TAATCAGTTATTCAGTAA
* *
16079972 TAATCATTTGTTCAGTAA
1 TAATCAGTTATTCAGTAA
* * *
16079990 CAGTC-GTTTATTCAGTAT
1 TAATCAG-TTATTCAGTAA
** *
16080008 TAGCCAATTATTCAGTAA
1 TAATCAGTTATTCAGTAA
*
16080026 TAATTAGTTATTCAGTA
1 TAATCAGTTATTCAGTA
16080043 CCTTTATTTA
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (18 bp):
TAATCAGTTATTCAGTAA
Found at i:16084308 original size:16 final size:16
Alignment explanation
Indices: 16084287--16084322 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
16084277 CAGTGAAGTC
16084287 CTTTGTCACACCTCAA
1 CTTTGTCACACCTCAA
16084303 CTTTGTCACACCTCAA
1 CTTTGTCACACCTCAA
16084319 CTTT
1 CTTT
16084323 CACTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
CTTTGTCACACCTCAA
Found at i:16084849 original size:18 final size:18
Alignment explanation
Indices: 16084826--16084861 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
16084816 CACTGATAAG
16084826 CTGAATCTTTTAACAGAA
1 CTGAATCTTTTAACAGAA
16084844 CTGAATCTTTTAACAGAA
1 CTGAATCTTTTAACAGAA
16084862 ATATCATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
CTGAATCTTTTAACAGAA
Found at i:16086117 original size:18 final size:18
Alignment explanation
Indices: 16086094--16086189 Score: 84
Period size: 18 Copynumber: 5.3 Consensus size: 18
16086084 CAGTTAGTCA
* *
16086094 TCAGTATTAATCAGTTAT
1 TCAGTAATAATCAATTAT
* *
16086112 TCAGTAATAATCATTTGT
1 TCAGTAATAATCAATTAT
* * * **
16086130 TCAATAACAGTCGTTTAT
1 TCAGTAATAATCAATTAT
** *
16086148 TCAGTAGCAGTCAATTAT
1 TCAGTAATAATCAATTAT
16086166 TCAGTAATAATCAATTAT
1 TCAGTAATAATCAATTAT
16086184 TCAGTA
1 TCAGTA
16086190 CCTTTATTTA
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
TCAGTAATAATCAATTAT
Found at i:16086407 original size:44 final size:44
Alignment explanation
Indices: 16086353--16086444 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
16086343 TCGAAGTAAT
16086353 AGTAATAGTACAACACACA-AGGTGCCTCATCGACTTAAAG-TCGA
1 AGTAATAGTACAACACACATA-GTGCCTCATCGAC-TAAAGTTCGA
* ** *
16086397 AGTAATAGTACGACACTTATAGTGCCTCATCGACTCAAGTTCGA
1 AGTAATAGTACAACACACATAGTGCCTCATCGACTAAAGTTCGA
16086441 AGTA
1 AGTA
16086445 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 4 0.10
44 37 0.88
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (44 bp):
AGTAATAGTACAACACACATAGTGCCTCATCGACTAAAGTTCGA
Found at i:16087784 original size:14 final size:15
Alignment explanation
Indices: 16087766--16087802 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16087756 AATCAATATA
16087766 AAATAATA-TTA-TT
1 AAATAATATTTACTT
16087779 ATAATAATATTTACTT
1 A-AATAATATTTACTT
16087795 AAATAATA
1 AAATAATA
16087803 AGTAAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.05
14 7 0.33
15 10 0.48
16 3 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATAATATTTACTT
Found at i:16095672 original size:31 final size:31
Alignment explanation
Indices: 16095634--16095727 Score: 179
Period size: 31 Copynumber: 3.0 Consensus size: 31
16095624 AATAACAAGA
16095634 TCCATCTTAGGTTTCATTCCCCCTAGGTATT
1 TCCATCTTAGGTTTCATTCCCCCTAGGTATT
*
16095665 TCCATCTTAGGTTTCATTCCCCTTAGGTATT
1 TCCATCTTAGGTTTCATTCCCCCTAGGTATT
16095696 TCCATCTTAGGTTTCATTCCCCCTAGGTATT
1 TCCATCTTAGGTTTCATTCCCCCTAGGTATT
16095727 T
1 T
16095728 AGGGGGTTTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.16, C:0.28, G:0.13, T:0.44
Consensus pattern (31 bp):
TCCATCTTAGGTTTCATTCCCCCTAGGTATT
Found at i:16095706 original size:15 final size:15
Alignment explanation
Indices: 16095657--16095707 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
16095647 TCATTCCCCC
16095657 TAGGTATTTCCATCT
1 TAGGTATTTCCATCT
* *
16095672 TAGGTTTCATTCC-CCT
1 TAGGTAT--TTCCATCT
16095688 TAGGTATTTCCATCT
1 TAGGTATTTCCATCT
16095703 TAGGT
1 TAGGT
16095708 TTCATTCCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 4 0.14
15 13 0.45
16 8 0.28
17 4 0.14
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (15 bp):
TAGGTATTTCCATCT
Found at i:16096029 original size:13 final size:13
Alignment explanation
Indices: 16096011--16096037 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16096001 GCTCGACAGG
16096011 GACACGCCCATGT
1 GACACGCCCATGT
16096024 GACACGCCCATGT
1 GACACGCCCATGT
16096037 G
1 G
16096038 TGATTGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:16098026 original size:16 final size:16
Alignment explanation
Indices: 16097996--16098034 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
16097986 ATTTAAGTGA
*
16097996 AATGCTCATATCAAAAT
1 AATG-TCATAACAAAAT
16098013 AATGTCATAACAAAAT
1 AATGTCATAACAAAAT
*
16098029 ATTGTC
1 AATGTC
16098035 TAATCAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (16 bp):
AATGTCATAACAAAAT
Found at i:16104846 original size:23 final size:23
Alignment explanation
Indices: 16104819--16104865 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
16104809 TTATAACATT
*
16104819 TCACAAATATCTAATTCTATTCC
1 TCACAAATATCCAATTCTATTCC
16104842 TCACAAATATCCAATTCTATTCC
1 TCACAAATATCCAATTCTATTCC
16104865 T
1 T
16104866 ATGGTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (23 bp):
TCACAAATATCCAATTCTATTCC
Found at i:16110139 original size:43 final size:42
Alignment explanation
Indices: 16109979--16110141 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 42
16109969 TATGTGTTAT
* * *
16109979 CATGTAAGACCACGTCTGGGATGTTGGCA-TGTACTTATGATTTA
1 CATGTAAGACCACATATGGGACGTTGGCATTGTA-TT-TGA-TTA
* * * * *
16110023 CGTGTAAGACCACGTATGGGACATTGGCATCGTATTTGATTT
1 CATGTAAGACCACATATGGGACGTTGGCATTGTATTTGATTA
* * * *
16110065 CGTGTAAGACGC-TATCTGGGAC-TGTGACATTGATATTTGATTA
1 CATGTAAGAC-CACATATGGGACGT-TGGCATTG-TATTTGATTA
16110108 CATGTAAGACCACATATGGGACGTTGGCATTGTA
1 CATGTAAGACCACATATGGGACGTTGGCATTGTA
16110142 CGAGCTTTCC
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 37 0.38
44 28 0.29
45 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
CATGTAAGACCACATATGGGACGTTGGCATTGTATTTGATTA
Found at i:16111712 original size:10 final size:8
Alignment explanation
Indices: 16111688--16111748 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
16111678 AGAAATTTAA
16111688 AATAATAT
1 AATAATAT
16111696 AATAATAT
1 AATAATAT
16111704 ATATAAATAT
1 A-AT-AATAT
16111714 GAAATAATAT
1 --AATAATAT
** *
16111724 AGGAAAAT
1 AATAATAT
16111732 AATAATAT
1 AATAATAT
16111740 AATAA-AT
1 AATAATAT
16111747 AA
1 AA
16111749 GGTTTATATG
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
7 4 0.09
8 24 0.56
9 2 0.05
10 10 0.23
11 2 0.05
12 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (8 bp):
AATAATAT
Found at i:16113981 original size:41 final size:40
Alignment explanation
Indices: 16113847--16113981 Score: 96
Period size: 41 Copynumber: 3.2 Consensus size: 40
16113837 TTGCTCCTTG
16113847 TAAACACAAGGATGCCAAATCATCTTGGATCTGCTTTAGTA
1 TAAACACAAGGATGCCAAATCATCTTGGATCTGC-TTAGTA
* * * ** *
16113888 TAAACATCTGAAGG-T--CAGACCTGCTATGTCTTTGATTTGCTTTTTG
1 TAAACA-C--AAGGATGCCA-A-AT-C-A--TCTTGGATCTGCTTAGTA
16113934 TAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTA
1 TAAACACAAGGATGCCAAATCATCTTGGATCTGCTT-AGTA
16113975 TAAACAC
1 TAAACAC
16113982 CTGAAGGTTA
Statistics
Matches: 69, Mismatches: 12, Indels: 26
0.64 0.11 0.24
Matches are distributed among these distances:
40 12 0.17
41 16 0.23
42 3 0.04
43 7 0.10
44 7 0.10
45 3 0.04
46 11 0.16
47 10 0.14
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (40 bp):
TAAACACAAGGATGCCAAATCATCTTGGATCTGCTTAGTA
Found at i:16113987 original size:87 final size:87
Alignment explanation
Indices: 16113770--16114003 Score: 324
Period size: 87 Copynumber: 2.7 Consensus size: 87
16113760 ACAATATAGA
* * ** * * * *
16113770 GATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCG
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTCTTCG
16113835 ATTTGCTCCTTGTAAACACAAG
66 ATTTGCTCCTTGTAAACACAAG
* * * *
16113857 GATGCCAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTCAGACCTGCTATGTCTTTG
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTCTTCG
**
16113922 ATTTGCTTTTTGTAAACACAAG
66 ATTTGCTCCTTGTAAACACAAG
* *
16113944 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGATCTACTATGT
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGT
16114004 GTCTGCTCTC
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 128 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (87 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTCTTCG
ATTTGCTCCTTGTAAACACAAG
Found at i:16114046 original size:87 final size:91
Alignment explanation
Indices: 16113955--16114184 Score: 245
Period size: 94 Copynumber: 2.5 Consensus size: 91
16113945 ATGCCAAATC
* *
16113955 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGATCTACTATG-T-G-TCTGCTCTCCGT
1 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTTCGATCTGCTCTCCGT
* * * *
16114017 CGAATATGGAGACGCCAGATC-TGTT
66 CGAAGATAGAGAAGCCAAATCTTGTT
* * * *
16114042 ATCTTGGATCTGCTTTAATGTGA-AAACATCTGAAAGTCAGATCTGCTATGTCTTCGATTTGCTC
1 ATCTTGGATCTGC-TTCA-GT-ATAAACACCTGAAGGTCAGATCTGCTATG--TTCGATCTGCTC
* *
16114106 TCCGTCGGAGATAGTGAAGCCAAATCTTGTT
61 TCCGTCGAAGATAGAGAAGCCAAATCTTGTT
* * *
16114137 ATCTTGGATCTGCTTCAGTGTAAACACGTGAAGGCCAGATCTGCTATG
1 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATG
16114185 CTTTGGTCTG
Statistics
Matches: 115, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
87 13 0.11
88 3 0.03
89 25 0.22
90 1 0.01
92 1 0.01
93 26 0.23
94 29 0.25
95 17 0.15
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (91 bp):
ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTTCGATCTGCTCTCCGT
CGAAGATAGAGAAGCCAAATCTTGTT
Found at i:16122648 original size:46 final size:46
Alignment explanation
Indices: 16122540--16122654 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 46
16122530 CCATGTCTTC
* * * *
16122540 GATATGGACTTACATGAATT-ATTCTTGTCTCCAATGCCATATATAT
1 GATATGGACTTACATG-GTTCATTCCTATCTCCAAAGCCATATATAT
* *
16122586 -ATTATGGGCTTACATGGTTCATTCCTATCTCCAAAGCCATATATTT
1 GA-TATGGACTTACATGGTTCATTCCTATCTCCAAAGCCATATATAT
*
16122632 GATATGGACTTACATGGCTCATT
1 GATATGGACTTACATGGTTCATT
16122655 TCTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.05
46 54 0.93
47 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (46 bp):
GATATGGACTTACATGGTTCATTCCTATCTCCAAAGCCATATATAT
Found at i:16126632 original size:14 final size:16
Alignment explanation
Indices: 16126597--16126633 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
16126587 CAAACGATGC
16126597 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
16126612 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
16126627 -ATGCAAA
1 GATGCAAA
16126634 AAGGACATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:16130612 original size:10 final size:8
Alignment explanation
Indices: 16130588--16130648 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
16130578 AGAAATTTAA
16130588 AATAATAT
1 AATAATAT
16130596 AATAATAT
1 AATAATAT
16130604 ATATAAATAT
1 A-AT-AATAT
16130614 GAAATAATAT
1 --AATAATAT
** *
16130624 AGGAAAAT
1 AATAATAT
16130632 AATAATAT
1 AATAATAT
16130640 AATAA-AT
1 AATAATAT
16130647 AA
1 AA
16130649 GGTTTATATG
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
7 4 0.09
8 24 0.56
9 2 0.05
10 10 0.23
11 2 0.05
12 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (8 bp):
AATAATAT
Found at i:16130671 original size:23 final size:24
Alignment explanation
Indices: 16130636--16130680 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
16130626 GAAAATAATA
*
16130636 ATATAATAAATAAGGTTTATATGT
1 ATATAATAAATAAGATTTATATGT
*
16130660 ATATAA-AAATAATATTTATAT
1 ATATAATAAATAAGATTTATAT
16130681 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (24 bp):
ATATAATAAATAAGATTTATATGT
Found at i:16130674 original size:17 final size:17
Alignment explanation
Indices: 16130654--16130688 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16130644 AATAAGGTTT
16130654 ATATGTATATAAAAATA
1 ATATGTATATAAAAATA
* *
16130671 ATATTTATATTAAAATA
1 ATATGTATATAAAAATA
16130688 A
1 A
16130689 AAGTAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
ATATGTATATAAAAATA
Found at i:16130702 original size:21 final size:22
Alignment explanation
Indices: 16130662--16130704 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
16130652 TTATATGTAT
16130662 ATAAAAATAATATTTATATTAAA
1 ATAAAAATAATA-TTATATTAAA
*
16130685 ATAAAAGTAATA-TATATTAA
1 ATAAAAATAATATTATATTAA
16130705 TTTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
ATAAAAATAATATTATATTAAA
Done.