Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 56 of 332
Found at i:16544314 original size:40 final size:40
Alignment explanation
Indices: 16544189--16544443 Score: 317
Period size: 40 Copynumber: 6.5 Consensus size: 40
16544179 CGGATGATAA
*
16544189 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATA-T
*
16544229 CC-GGCTAAG-CCCGAA-GCATTTGTGCGAGTTACTATATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATA-T
16544267 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
16544307 CCAGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
* *
16544347 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
16544387 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
*
16544427 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
16544444 ATACTTGGGT
Statistics
Matches: 190, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
37 15 0.08
38 12 0.06
39 29 0.15
40 112 0.59
41 22 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:16544413 original size:120 final size:117
Alignment explanation
Indices: 16544192--16544443 Score: 373
Period size: 120 Copynumber: 2.1 Consensus size: 117
16544182 ATGATAACCG
* *
16544192 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGCTAAGCCCGAAGCATTTGTGCGAG
1 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATTCCGGCTAAGCCCGAAGCATTTGTGCAAG
*
16544257 TTACTATATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCC
66 TTACTATATTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
* *
16544309 AGGCTATGTCCCGAAGGCATTTATGCTAGTGA-TTATATCCGGGCTAAGACCCGAAGGCATTTGT
1 -GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAAT-TCC-GGCTAAG-CCCGAA-GCATTTGT
* *
16544373 GCAAGTTGCTATA-TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
61 GCAAGTTACTATATTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
*
16544429 GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAG
16544444 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
117 3 0.02
118 32 0.26
119 20 0.17
120 47 0.39
121 19 0.16
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (117 bp):
GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATTCCGGCTAAGCCCGAAGCATTTGTGCAAG
TTACTATATTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
Found at i:16550725 original size:47 final size:47
Alignment explanation
Indices: 16550580--16551022 Score: 546
Period size: 47 Copynumber: 9.1 Consensus size: 47
16550570 CCCTTCGGGA
* * * * * * *
16550580 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
16550627 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
16550673 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
16550720 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
16550767 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** **
16550814 CTTATCACACATATACACTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTT-T--CACAT-T-CA---TCACA-TCGGC-CAT---TA----GGC
*
16550878 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
16550925 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
16550972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
16551019 CTTA
1 CTTA
16551023 CTATCATTTC
Statistics
Matches: 351, Mismatches: 27, Indels: 36
0.85 0.07 0.09
Matches are distributed among these distances:
46 40 0.11
47 249 0.71
48 1 0.00
50 5 0.01
51 1 0.00
52 2 0.01
54 3 0.01
55 8 0.02
56 8 0.02
57 2 0.01
59 2 0.01
60 1 0.00
61 5 0.01
63 1 0.00
64 23 0.07
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:16550836 original size:17 final size:17
Alignment explanation
Indices: 16550814--16550855 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
16550804 GCTATTAGGC
16550814 CTTATCACACATATACA
1 CTTATCACACATATACA
16550831 CTTATCACACATATACA
1 CTTATCACACATATACA
16550848 CTT-TCACA
1 CTTATCACA
16550856 TTCATCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (17 bp):
CTTATCACACATATACA
Found at i:16550849 original size:111 final size:112
Alignment explanation
Indices: 16550720--16550949 Score: 403
Period size: 111 Copynumber: 2.1 Consensus size: 112
16550710 GCCATTAGGC
* *
16550720 CTTATCAC-CTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 CTTATCACACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
*
16550784 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
*
16550831 CTTATCACAC-ATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACA
1 CTTATCACACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
16550895 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
16550942 CTT-TCACA
1 CTTATCACA
16550950 TTCATCACAT
Statistics
Matches: 114, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
110 5 0.04
111 108 0.95
112 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (112 bp):
CTTATCACACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
Found at i:16550868 original size:64 final size:64
Alignment explanation
Indices: 16550767--16550902 Score: 238
Period size: 64 Copynumber: 2.1 Consensus size: 64
16550757 GCTATTAGGC
* *
16550767 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
*
16550831 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
16550895 CTT-TCACA
1 CTTATCACA
16550903 TTCATCACAT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
63 5 0.07
64 64 0.93
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (64 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
Found at i:16550870 original size:158 final size:158
Alignment explanation
Indices: 16550673--16550996 Score: 580
Period size: 158 Copynumber: 2.1 Consensus size: 158
16550663 GCCATTAGGC
*
16550673 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-CTATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC-ATATACA
* *
16550737 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
16550802 CGGCTATTAGGCCTTATCACACATATACA
130 CGGCTATTAGGCCTTATCACACATATACA
*
16550831 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
16550896 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
16550961 GGCTATTAGGCCTTATCACATATATACA
131 GGCTATTAGGCCTTATCACACATATACA
16550989 CTT-TCACA
1 CTTATCACA
16550997 TTCATCACAT
Statistics
Matches: 160, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
157 5 0.03
158 154 0.96
159 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (158 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCTATTAGGCCTTATCACACATATACA
Found at i:16551008 original size:205 final size:204
Alignment explanation
Indices: 16550631--16551022 Score: 723
Period size: 205 Copynumber: 1.9 Consensus size: 204
16550621 CTCGGCCCTG
* *
16550631 TCACATATATACACTTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 TCACACATATACACTTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCA
16550696 CATTCATCACATCGGCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCTA
66 CATTCATCACATCGGCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCTA
*
16550761 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
131 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAT
16550826 ATACACTTA
196 ATACACTTA
*
16550835 TCACACATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACACATATACACTTTC
16550900 ACATTCATCACATCGGCCATTAGGCCTTATCACAC-ATATACACTTTCACATTCATCACATCGGC
65 ACATTCATCACATCGGCCATTAGGCCTTATCAC-CTATATACACTTTCACATTCATCACATCGGC
16550964 TATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
129 TATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
16551023 CTATCATTTC
Statistics
Matches: 182, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
204 24 0.13
205 157 0.86
206 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (204 bp):
TCACACATATACACTTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCTA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAT
ATACACTTA
Found at i:16556634 original size:40 final size:40
Alignment explanation
Indices: 16556576--16556832 Score: 328
Period size: 40 Copynumber: 6.5 Consensus size: 40
16556566 CGGATGATAA
*
16556576 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
16556616 CCGGGCTAAG-CCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCC-GAAGGCATTTGTGCGAGTGACTATAT
*
16556656 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
* * * *
16556696 CCGGGCTATGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
16556736 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
* *
16556776 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
*
16556816 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
16556833 ATACTTGGGT
Statistics
Matches: 194, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
39 18 0.09
40 169 0.87
41 7 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:16556791 original size:120 final size:120
Alignment explanation
Indices: 16556576--16556832 Score: 403
Period size: 120 Copynumber: 2.1 Consensus size: 120
16556566 CGGATGATAA
*
16556576 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATTCCGGGCTAAGCCCTGAAGGCATTTG
*
16556641 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTGCTATAT
66 TGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAT
* *
16556696 CCGGGCTATGTCCCGAAGGCATTTATGCTAGTGA-TTATATCCGGGCTAAGACCC-GAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAAT-TCCGGGCTAAG-CCCTGAAGGCATT
* * *
16556759 TGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
64 TGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAT
*
16556816 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
16556833 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
119 16 0.13
120 107 0.85
121 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATTCCGGGCTAAGCCCTGAAGGCATTTG
TGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAT
Found at i:16557100 original size:22 final size:22
Alignment explanation
Indices: 16557060--16557101 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
16557050 GAATGTGCAT
*
16557060 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
16557082 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
16557102 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:16580975 original size:57 final size:58
Alignment explanation
Indices: 16580833--16580989 Score: 158
Period size: 57 Copynumber: 2.7 Consensus size: 58
16580823 CTATTTACCT
* * * * *
16580833 CATTATAGAAAGGATTTAGCCCAGACGGGTAATCCTAATATAATACCTCTCGAGTATA
1 CATTATATAAAGGATTTAGCCTAGACTGGTAATCCTAATATAATACCTCTCAAGCATA
* * * * *
16580891 CGTTATGATTAAGG-TTTAGCCTAGACTGGTAATCCTAAT-TGA-ACTCTTTTAAGCATA
1 CATTAT-ATAAAGGATTTAGCCTAGACTGGTAATCCTAATATAATAC-CTCTCAAGCATA
* * *
16580948 CATTATATAAAGGATTTAGCCTGGACTGGTAATTCTATTATA
1 CATTATATAAAGGATTTAGCCTAGACTGGTAATCCTAATATA
16580990 CGATATGTGG
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
56 8 0.10
57 37 0.47
58 29 0.37
59 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (58 bp):
CATTATATAAAGGATTTAGCCTAGACTGGTAATCCTAATATAATACCTCTCAAGCATA
Found at i:16585168 original size:33 final size:33
Alignment explanation
Indices: 16585094--16585176 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 33
16585084 TTATAAAACC
* * *
16585094 TAAAGATGAAGTAAAAATAGTATTAAAGAGAAA
1 TAAAGATAAAATAAAAATAGTATTAAAGACAAA
16585127 TAAA-ATAAAATAAAAAGTAAGT-TTAAA-ACAAA
1 TAAAGATAAAATAAAAA-T-AGTATTAAAGACAAA
16585159 TAAAGATAAAAGTAAAAA
1 TAAAGATAAAA-TAAAAA
16585177 CATTGAAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
32 18 0.42
33 16 0.37
34 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.12, T:0.20
Consensus pattern (33 bp):
TAAAGATAAAATAAAAATAGTATTAAAGACAAA
Found at i:16586736 original size:10 final size:10
Alignment explanation
Indices: 16586721--16586751 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
16586711 CTCAAATAAC
16586721 ACAAGAAATA
1 ACAAGAAATA
16586731 ACAAGAAATA
1 ACAAGAAATA
16586741 ACAAGATAATA
1 ACAAGA-AATA
16586752 GAGAGAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 16 0.80
11 4 0.20
ACGTcount: A:0.68, C:0.10, G:0.10, T:0.13
Consensus pattern (10 bp):
ACAAGAAATA
Found at i:16587262 original size:55 final size:55
Alignment explanation
Indices: 16587164--16587294 Score: 136
Period size: 55 Copynumber: 2.4 Consensus size: 55
16587154 ATATATGTGC
* * * * *
16587164 ACGCCCGTGTTCATTTGACAGTATCGACCACGGCTTCTAGACACCGGCATGTCAA
1 ACGCCCGTGTTCTTTTGGCAGTATCAACCACGGCTTATAGACACAGGCATGTCAA
* * * * * ***
16587219 ATGCCCGTGTTTTTTTGGCAGTTTCAACCACGGCTTATTGACACAGGCGTGTTGC
1 ACGCCCGTGTTCTTTTGGCAGTATCAACCACGGCTTATAGACACAGGCATGTCAA
*
16587274 ACGCCCGTGTTGTTTTGGCAG
1 ACGCCCGTGTTCTTTTGGCAG
16587295 GATTGTCCAC
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (55 bp):
ACGCCCGTGTTCTTTTGGCAGTATCAACCACGGCTTATAGACACAGGCATGTCAA
Found at i:16593419 original size:37 final size:37
Alignment explanation
Indices: 16593369--16593442 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
16593359 GATCGATGTC
*
16593369 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
16593406 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
16593443 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:16593769 original size:30 final size:30
Alignment explanation
Indices: 16593733--16593801 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
16593723 CACATGGTTA
* *
16593733 GACACACGACCTAGTGTTTAGGCCATGTGT
1 GACACACGACCTAATGTCTAGGCCATGTGT
16593763 GACACACGACCTAATGTCTAGGCCATGTGT
1 GACACACGACCTAATGTCTAGGCCATGTGT
16593793 GACACACGA
1 GACACACGA
16593802 TTCCCTCCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.22
Consensus pattern (30 bp):
GACACACGACCTAATGTCTAGGCCATGTGT
Found at i:16595399 original size:30 final size:30
Alignment explanation
Indices: 16595345--16595407 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
16595335 TATGATATGG
* * *
16595345 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
* *
16595375 TATCTTGGATTCCTCTATCATGGATTTCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
16595405 TAT
1 TAT
16595408 TCTGGCTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (30 bp):
TATCTTGGATTCCTCTACCATGGATATCTT
Found at i:16596859 original size:13 final size:13
Alignment explanation
Indices: 16596843--16596867 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16596833 GAATGATTTC
16596843 TTGAAAATTTCGT
1 TTGAAAATTTCGT
16596856 TTGAAAATTTCG
1 TTGAAAATTTCG
16596868 ACGTTTGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
TTGAAAATTTCGT
Found at i:16599964 original size:30 final size:30
Alignment explanation
Indices: 16599928--16599997 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
16599918 CACATGGTTG
16599928 GACACACGGTCATGTGTCTAGGCCGTGTTT
1 GACACACGGTCATGTGTCTAGGCCGTGTTT
*
16599958 GACACACGGTCGTGTGTCTAGGCCGTGTTT
1 GACACACGGTCATGTGTCTAGGCCGTGTTT
16599988 GACACACGGT
1 GACACACGGT
16599998 TCCCTCCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.27
Consensus pattern (30 bp):
GACACACGGTCATGTGTCTAGGCCGTGTTT
Found at i:16606555 original size:15 final size:15
Alignment explanation
Indices: 16606531--16606560 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16606521 TCTTAAAAAA
*
16606531 TTCTATTTCTATTTT
1 TTCTAGTTCTATTTT
16606546 TTCTAGTTCTATTTT
1 TTCTAGTTCTATTTT
16606561 CTTAGGCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (15 bp):
TTCTAGTTCTATTTT
Found at i:16617052 original size:25 final size:25
Alignment explanation
Indices: 16617018--16617083 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
16617008 CTATTTTCAT
* **
16617018 AGCTCGTGTGAGCATACTGATTTAC
1 AGCTCGTGTGAGCATACCGATACAC
*
16617043 AGCTTGTGTGAGCATACCGATACAC
1 AGCTCGTGTGAGCATACCGATACAC
*
16617068 AACTCGTGTGAGCATA
1 AGCTCGTGTGAGCATA
16617084 AATGTGCAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCGATACAC
Found at i:16623038 original size:23 final size:23
Alignment explanation
Indices: 16623012--16623091 Score: 126
Period size: 23 Copynumber: 3.5 Consensus size: 23
16623002 TCAGCTTGTA
16623012 AGAGCTTACTGTTTCAGGTCGTC
1 AGAGCTTACTGTTTCAGGTCGTC
16623035 AGAGCTTACTGTTTCAGGTCGTC
1 AGAGCTTACTGTTTCAGGTCGTC
* *
16623058 AGAGCTTACTATTTCAGGTCAAT-
1 AGAGCTTACTGTTTCAGGTC-GTC
16623081 AGAGCTTACTG
1 AGAGCTTACTG
16623092 CCCATCAGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
23 52 0.98
24 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGGTCGTC
Found at i:16630717 original size:23 final size:23
Alignment explanation
Indices: 16630669--16630722 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
16630659 TCAACTCATA
* ***
16630669 AGAGCTTACTGTTTTAGCTTGTT
1 AGAGCTTACTGTTTCAGCTCAAT
16630692 AGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
16630715 AGAGCTTA
1 AGAGCTTA
16630723 TTGTCCATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:16633550 original size:17 final size:17
Alignment explanation
Indices: 16633528--16633568 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
16633518 AATTAATGAT
16633528 GGCTAATTAAAAATTAG
1 GGCTAATTAAAAATTAG
16633545 GGCTAATTAAAAATTAG
1 GGCTAATTAAAAATTAG
16633562 GGCTAAT
1 GGCTAAT
16633569 GTGACAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (17 bp):
GGCTAATTAAAAATTAG
Found at i:16635794 original size:19 final size:20
Alignment explanation
Indices: 16635770--16635808 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
16635760 CCAACCCTCA
*
16635770 AAACTTTTA-TTTTCCCCCT
1 AAACTTTTACTTTTCACCCT
16635789 AAACTTTTACTTTTCACCCT
1 AAACTTTTACTTTTCACCCT
16635809 TTACCCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
AAACTTTTACTTTTCACCCT
Found at i:16636232 original size:19 final size:19
Alignment explanation
Indices: 16636208--16636245 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16636198 AAGTTAATAA
16636208 CAAATTTGATTACGATGGG
1 CAAATTTGATTACGATGGG
*
16636227 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGATGGG
16636246 TGACAGCGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (19 bp):
CAAATTTGATTACGATGGG
Found at i:16646093 original size:90 final size:88
Alignment explanation
Indices: 16645956--16646135 Score: 263
Period size: 90 Copynumber: 2.0 Consensus size: 88
16645946 AAAAAAAATT
* * *
16645956 CCTCTCCTTTTTTTTTCACTTAATTGAGTACTTGAACTTTCAAAATGCATATAAAAA-AGTCCTC
1 CCTCTCCTTTTCTTTTCACTTAATTGAGTACTTGAACTTTCAAAATGCATA-AAAAAGA-TACTA
*
16646020 AAACTTCTTCAAAAAAAGCAATTAAG
64 AAAATTCTTC-AAAAAAGCAATTAAG
* *
16646046 CCTCTGCTTTTCTTTTCACTTAATTGGGTACTTGAACTTTCAAAATGCATAAAAAAGATACTAAA
1 CCTCTCCTTTTCTTTTCACTTAATTGAGTACTTGAACTTTCAAAATGCATAAAAAAGATACTAAA
*
16646111 AATTTTTCAAAAAAGCAATTAAG
66 AATTCTTCAAAAAAGCAATTAAG
16646134 CC
1 CC
16646136 CATGCTCTTA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
88 17 0.21
89 16 0.20
90 49 0.60
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (88 bp):
CCTCTCCTTTTCTTTTCACTTAATTGAGTACTTGAACTTTCAAAATGCATAAAAAAGATACTAAA
AATTCTTCAAAAAAGCAATTAAG
Found at i:16646202 original size:27 final size:27
Alignment explanation
Indices: 16646172--16646229 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
16646162 AAATAATTAG
* *
16646172 AAAAA-ATAAAAATTATTAAATTTTAAT
1 AAAAATATAAAAAAT-TTAAAATTTAAT
* *
16646199 AAAAATTTAAAAAATTTAAAATTTATT
1 AAAAATATAAAAAATTTAAAATTTAAT
16646226 AAAA
1 AAAA
16646230 TTTATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
AAAAATATAAAAAATTTAAAATTTAAT
Found at i:16646213 original size:21 final size:20
Alignment explanation
Indices: 16646176--16646215 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
16646166 AATTAGAAAA
**
16646176 AATAAAAATTATTAAATTTT
1 AATAAAAATTAAAAAATTTT
16646196 AATAAAAATTTAAAAAATTT
1 AATAAAAA-TTAAAAAATTT
16646216 AAAATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAAAAATTAAAAAATTTT
Found at i:16646229 original size:17 final size:16
Alignment explanation
Indices: 16646200--16646233 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16646190 AATTTTAATA
16646200 AAAATTTAAAAAATTT
1 AAAATTTAAAAAATTT
*
16646216 AAAATTTATTAAAATTT
1 AAAATTTA-AAAAATTT
16646233 A
1 A
16646234 TATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATTTAAAAAATTT
Found at i:16646520 original size:8 final size:8
Alignment explanation
Indices: 16646498--16646537 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
16646488 CTTTATAAAA
16646498 TTTTATAT
1 TTTTATAT
*
16646506 TTCTATAT
1 TTTTATAT
*
16646514 ATTTATAT
1 TTTTATAT
16646522 TTTTATGAT
1 TTTTAT-AT
16646531 TTTTATA
1 TTTTATA
16646538 AAAATTTACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (8 bp):
TTTTATAT
Found at i:16646551 original size:19 final size:20
Alignment explanation
Indices: 16646529--16646576 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
16646519 TATTTTTATG
16646529 ATTTTTATA-AAAATTTACA
1 ATTTTTATATAAAATTTACA
***
16646548 ATTTTT-TATATTTTTTACA
1 ATTTTTATATAAAATTTACA
16646567 ATTTTTATAT
1 ATTTTTATAT
16646577 TTTTTCTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 19 0.79
20 3 0.12
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTTTATATAAAATTTACA
Found at i:16646580 original size:19 final size:19
Alignment explanation
Indices: 16646542--16646581 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
16646532 TTTATAAAAA
16646542 TTTACAATTTTTTATATTT
1 TTTACAATTTTTTATATTT
16646561 TTTACAA-TTTTTATATTT
1 TTTACAATTTTTTATATTT
16646579 TTT
1 TTT
16646582 CTAATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTACAATTTTTTATATTT
Found at i:16646589 original size:9 final size:9
Alignment explanation
Indices: 16646498--16646617 Score: 61
Period size: 9 Copynumber: 13.7 Consensus size: 9
16646488 CTTTATAAAA
16646498 TTTTAT-AT
1 TTTTATAAT
*
16646506 TTCTAT-AT
1 TTTTATAAT
*
16646514 ATTTAT-AT
1 TTTTATAAT
*
16646522 TTTTATGAT
1 TTTTATAAT
*
16646531 TTTTATAAAA
1 TTTTAT-AAT
* *
16646541 ATTTACAATT
1 TTTTATAA-T
*
16646551 TTTTATATT
1 TTTTATAAT
*
16646560 TTTTACAAT
1 TTTTATAAT
*
16646569 TTTTATATT
1 TTTTATAAT
*
16646578 TTTTCTAAT
1 TTTTATAAT
* *
16646587 TTTAATAAA
1 TTTTATAAT
*
16646596 ATTT-TAAT
1 TTTTATAAT
*
16646604 ATTTA-AAT
1 TTTTATAAT
16646612 TTTTAT
1 TTTTAT
16646618 TAAAATTGAA
Statistics
Matches: 82, Mismatches: 25, Indels: 9
0.71 0.22 0.08
Matches are distributed among these distances:
8 32 0.39
9 40 0.49
10 10 0.12
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:16647308 original size:29 final size:28
Alignment explanation
Indices: 16647246--16647317 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
16647236 TAAAAATTAG
*
16647246 AAAAAAAATT-ATAAAAAACTAAATATT
1 AAAAAATATTAATAAAAAACTAAATATT
** * *
16647273 ATTAAATGTTAATAAAAAATTCAAATATT
1 AAAAAATATTAATAAAAAACT-AAATATT
16647302 AAAAAATATTAA-AAAA
1 AAAAAATATTAATAAAA
16647318 TAGAAAAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
27 6 0.17
28 13 0.37
29 16 0.46
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (28 bp):
AAAAAATATTAATAAAAAACTAAATATT
Found at i:16647324 original size:9 final size:9
Alignment explanation
Indices: 16647295--16647351 Score: 62
Period size: 10 Copynumber: 6.1 Consensus size: 9
16647285 TAAAAAATTC
16647295 AAATATTAAA
1 AAATA-TAAA
16647305 AAATATTAAA
1 AAATA-TAAA
*
16647315 AAATAGAAA
1 AAATATAAA
16647324 AAATAT-AA
1 AAATATAAA
*
16647332 AAATCGTAAA
1 AAAT-ATAAA
16647342 AAATATAAA
1 AAATATAAA
16647351 A
1 A
16647352 TTTTATGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
8 6 0.15
9 14 0.34
10 21 0.51
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (9 bp):
AAATATAAA
Found at i:16647342 original size:18 final size:18
Alignment explanation
Indices: 16647295--16647351 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
16647285 TAAAAAATTC
*
16647295 AAATATTAAAAAATATTAAA
1 AAATAGTAAAAAATA-T-AA
16647315 AAATAG-AAAAAATATAA
1 AAATAGTAAAAAATATAA
*
16647332 AAATCGTAAAAAATATAA
1 AAATAGTAAAAAATATAA
16647350 AA
1 AA
16647352 TTTTATGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.21
18 14 0.41
19 8 0.24
20 5 0.15
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (18 bp):
AAATAGTAAAAAATATAA
Found at i:16647409 original size:10 final size:10
Alignment explanation
Indices: 16647396--16647420 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
16647386 CGGAATATAA
16647396 AAAATTTTAT
1 AAAATTTTAT
16647406 AAAATTTTAT
1 AAAATTTTAT
16647416 AAAAT
1 AAAAT
16647421 CGTAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATTTTAT
Found at i:16647445 original size:20 final size:20
Alignment explanation
Indices: 16647391--16647450 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
16647381 TATATCGGAA
* * *
16647391 TATAAAAAATTTTATAAAAT
1 TATAAAAAATGTAAGAAAAT
* *
16647411 TTTATAAAATCGTAAGAAAAT
1 TATAAAAAAT-GTAAGAAAAT
16647432 TATAAAAAATGTAAAGAAA
1 TATAAAAAATGT-AAGAAA
16647451 TATAAATTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (20 bp):
TATAAAAAATGTAAGAAAAT
Found at i:16647783 original size:89 final size:88
Alignment explanation
Indices: 16647622--16647785 Score: 231
Period size: 89 Copynumber: 1.9 Consensus size: 88
16647612 TAGCGGCTTC
* * *
16647622 ATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTAATACATTTTGAAAGTTCAAGTACCCAACTGA
1 ATTGCTTTTTTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCCAACTGA
16647687 GTGAAAAAAAAAGCAGGGGTTTA
66 GTGAAAAAAAAAGCAGGGGTTTA
* * * * *
16647710 ATTGCTTTTCTTGAAGAAGTTTGAGGGCCTCTTTGATACATTTTGAAAGTTC-AGTGCTCAATTG
1 ATTGCTTTT-TTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCCAACTG
*
16647774 AGTGCAAAAAAA
65 AGTGAAAAAAAA
16647786 GAAGAAGAGC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
88 29 0.44
89 37 0.56
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (88 bp):
ATTGCTTTTTTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCCAACTGA
GTGAAAAAAAAAGCAGGGGTTTA
Found at i:16647800 original size:89 final size:88
Alignment explanation
Indices: 16647617--16647809 Score: 228
Period size: 89 Copynumber: 2.2 Consensus size: 88
16647607 AAGAGTAGCG
* * * *
16647617 GCTTCATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTAATACATTTTGAAAGTTCAAGTACCCA
1 GCTTAATTGCTTTTTTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCCA
* *
16647682 ACTGAGTGAAAAAAAAAGCAGGG
66 ACTGAGTGAAAAAAAAAGCAAGA
* * * * *
16647705 GTTTAATTGCTTTTCTTGAAGAAGTTTGAGGGCCTCTTTGATACATTTTGAAAGTTC-AGTGCTC
1 GCTTAATTGCTTTT-TTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCC
*
16647769 AATTGAGTGCAAAAAAAGAAG-AAGA
65 AACTGAGTG-AAAAAAA-AAGCAAGA
*
16647794 GCTTAATTGTTTTTTT
1 GCTTAATTGCTTTTTT
16647810 TTTAAATAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
88 27 0.31
89 58 0.66
90 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (88 bp):
GCTTAATTGCTTTTTTGAAAAAGTTTGAGGGCCTCTTTAATACATTTTGAAAGTTCAAGTACCCA
ACTGAGTGAAAAAAAAAGCAAGA
Found at i:16654326 original size:45 final size:45
Alignment explanation
Indices: 16654277--16654389 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 45
16654267 AAGTGGTGCA
**
16654277 ATAGTATCTTTCAACTATGGG-CTTGATTCATTCACA-TTTAATGCC
1 ATAGTATCTTTCAACTATGGGTCTT-ACCCATTCA-AGTTTAATGCC
*
16654322 ATAGTATCTTTCAACTA-GGGTCTTACCCGTTCAAGTTTAATGCC
1 ATAGTATCTTTCAACTATGGGTCTTACCCATTCAAGTTTAATGCC
*
16654366 ATAGTATCTTTCAATTAT-GGTCTT
1 ATAGTATCTTTCAACTATGGGTCTT
16654390 TCTCATTTTA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
43 1 0.02
44 40 0.66
45 20 0.33
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (45 bp):
ATAGTATCTTTCAACTATGGGTCTTACCCATTCAAGTTTAATGCC
Found at i:16658595 original size:17 final size:17
Alignment explanation
Indices: 16658573--16658612 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
16658563 CAAAAAAGTC
16658573 TGCCAAACCCTAGAGTT
1 TGCCAAACCCTAGAGTT
*
16658590 TGCC-AACCTTAGAGTT
1 TGCCAAACCCTAGAGTT
*
16658606 CGCCAAA
1 TGCCAAA
16658613 TAGCGAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (17 bp):
TGCCAAACCCTAGAGTT
Found at i:16659555 original size:142 final size:141
Alignment explanation
Indices: 16659396--16659676 Score: 322
Period size: 140 Copynumber: 2.0 Consensus size: 141
16659386 CTATAAAAAT
* *** *
16659396 CCAGGTAATTCCCTGTAAAACCCCAG-GTTTTTCCTTTTA-CTAGGGAAAAGTTTAAAATTAATT
1 CCAGGTAATTCCCTGTAAAACCCC-GTGTTTTTCCTTTTATC-A-GAAAAAAACTAAAACTAATT
* * * * * *
16659459 CCAGAAAATGA-AAAAACTTAAAGGAA-ATTAAAAAGATAAAATGATTTTTCC-TATAAAGACCT
63 CCA-AAAAAGAGAAAAA-ATAAA-GAATATAAAAAAGAT-AAATGACTTTTCCACATAAAAACCT
16659521 AAGCTTTTCC-TATAAGA
124 AAGCTTTTCCATATAAGA
* * * *
16659538 CCAGTTAATTCCTTGTAAAACCTCGTGTTTTTCCTTTTATCAGAAAAAAACTAAAACTAATTCTA
1 CCAGGTAATTCCCTGTAAAACCCCGTGTTTTTCCTTTTATCAGAAAAAAACTAAAACTAATTCCA
16659603 AAAAAGAGAAAAAATAAAGAATATAAAAAAGATAAATGACTTTTCCACATAAAAACCTAAGCTTT
66 AAAAAGAGAAAAAATAAAGAATATAAAAAAGATAAATGACTTTTCCACATAAAAACCTAAGCTTT
16659668 TCCATATAA
131 TCCATATAA
16659677 AACTCAAGTT
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
139 15 0.13
140 39 0.33
141 28 0.24
142 35 0.30
143 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (141 bp):
CCAGGTAATTCCCTGTAAAACCCCGTGTTTTTCCTTTTATCAGAAAAAAACTAAAACTAATTCCA
AAAAAGAGAAAAAATAAAGAATATAAAAAAGATAAATGACTTTTCCACATAAAAACCTAAGCTTT
TCCATATAAGA
Found at i:16663869 original size:46 final size:46
Alignment explanation
Indices: 16663702--16663880 Score: 182
Period size: 46 Copynumber: 3.9 Consensus size: 46
16663692 TTATTATTCT
* ** * * *
16663702 TGTATTCTTGAGTTTGCAACATATACAGGAACTCAGAACCTAATCC
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTTAGAACCTAATCC
* * *
16663748 TGTATTCTCGAGTCCGCAACATGT-CAGGAGCTTAGAACCTAGTCA
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTTAGAACCTAATCC
* * * * * *
16663793 TGTATTCTCAAGTCCGTAACATATGTAGGAGCTTGGAACTTATTCC
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTTAGAACCTAATCC
* *
16663839 TGTAATCTCGAGTCCACAACATATGCAGGAGCTCTA-AACCTA
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCT-TAGAACCTA
16663881 GGCAAACTCA
Statistics
Matches: 108, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
45 38 0.35
46 69 0.64
47 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (46 bp):
TGTATTCTCGAGTCCGCAACATATGCAGGAGCTTAGAACCTAATCC
Found at i:16664614 original size:26 final size:26
Alignment explanation
Indices: 16664585--16664637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16664575 ATGCTTAAGG
16664585 GATAATTAACAAAATTCCATAAAAAT
1 GATAATTAACAAAATTCCATAAAAAT
*
16664611 GATAATTAGCAAAATTCCATAAAAAT
1 GATAATTAACAAAATTCCATAAAAAT
16664637 G
1 G
16664638 TTCATAGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (26 bp):
GATAATTAACAAAATTCCATAAAAAT
Found at i:16667013 original size:46 final size:46
Alignment explanation
Indices: 16666948--16667129 Score: 233
Period size: 46 Copynumber: 4.0 Consensus size: 46
16666938 TTATCTTCGA
* * * * * *
16666948 CATGATGCCATAGTGTCTTTCGACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
**
16666994 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
16667040 CACT-CTGCCATGGCATCTTTCAACCATGGTCTTACACATTTCATAT
1 CA-TGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
16667086 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
16667130 TTCAGAAAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
45 5 0.04
46 114 0.95
47 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:16667313 original size:13 final size:13
Alignment explanation
Indices: 16667295--16667321 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16667285 TTACCAGTCC
16667295 AGGCTAAATTCAG
1 AGGCTAAATTCAG
16667308 AGGCTAAATTCAG
1 AGGCTAAATTCAG
16667321 A
1 A
16667322 CCCTAATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
AGGCTAAATTCAG
Found at i:16667911 original size:38 final size:38
Alignment explanation
Indices: 16667868--16667943 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
16667858 TTCATCCTTT
16667868 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAAGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAAGAGGAA
*
16667906 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAAGAGGAA
16667944 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAAGAGGAA
Found at i:16669224 original size:40 final size:40
Alignment explanation
Indices: 16669130--16669274 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
16669120 TACTCGAATG
*
16669130 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
16669171 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
16669211 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
16669251 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
16669275 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:16672264 original size:11 final size:11
Alignment explanation
Indices: 16672248--16672309 Score: 72
Period size: 11 Copynumber: 5.5 Consensus size: 11
16672238 CTTTCTTTAT
16672248 ATAATAATAAA
1 ATAATAATAAA
16672259 ATAATAA-AAA
1 ATAATAATAAA
16672269 ATAATAATAAA
1 ATAATAATAAA
* *
16672280 ATATCTTATTAAA
1 ATA--ATAATAAA
*
16672293 ATATTAATAAA
1 ATAATAATAAA
16672304 ATAATA
1 ATAATA
16672310 TTTATCTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
10 10 0.23
11 25 0.57
13 9 0.20
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:16680023 original size:12 final size:12
Alignment explanation
Indices: 16680008--16680032 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16679998 TCTATATGTT
16680008 ACACTATAAATA
1 ACACTATAAATA
16680020 ACACTATAAATA
1 ACACTATAAATA
16680032 A
1 A
16680033 GTATTAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
ACACTATAAATA
Found at i:16694681 original size:23 final size:23
Alignment explanation
Indices: 16694654--16694698 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
16694644 TACTCTTTTC
*
16694654 ATAATTAAATCATATCTACTAAT
1 ATAATTAAATCAGATCTACTAAT
16694677 ATAATTAAATCAGATCTACTAA
1 ATAATTAAATCAGATCTACTAA
16694699 CATACCATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (23 bp):
ATAATTAAATCAGATCTACTAAT
Found at i:16695604 original size:39 final size:39
Alignment explanation
Indices: 16695549--16695626 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
16695539 AAAACAATTA
16695549 ATTCACTCTAGAGGCTTGAAATATAACTCTTTTCAAGAG
1 ATTCACTCTAGAGGCTTGAAATATAACTCTTTTCAAGAG
** *
16695588 ATTCACTCTATTGGCTTTAAATATAACTCTTTTCAAGAG
1 ATTCACTCTAGAGGCTTGAAATATAACTCTTTTCAAGAG
16695627 TTATAACACC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (39 bp):
ATTCACTCTAGAGGCTTGAAATATAACTCTTTTCAAGAG
Found at i:16704151 original size:42 final size:42
Alignment explanation
Indices: 16704056--16704152 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
16704046 CTAAGTCTAT
* *
16704056 GTGTAAAACCATATCTGGGATATGGCATCAAAATGAGATTAC
1 GTGTAAAACCATATCTAGGATATGACATCAAAATGAGATTAC
** ** *
16704098 GCATAAAACCATATCTAGGATATGACATTGATATGAGACTT-C
1 GTGTAAAACCATATCTAGGATATGACATCAAAATGAGA-TTAC
*
16704140 GTGTAAGACCATA
1 GTGTAAAACCATA
16704153 GCTGGGCTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (42 bp):
GTGTAAAACCATATCTAGGATATGACATCAAAATGAGATTAC
Found at i:16713582 original size:22 final size:22
Alignment explanation
Indices: 16713542--16713584 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16713532 GACTATGAGA
*
16713542 TCTGAGCTCATGAGTTATGTGG
1 TCTGAGCTCATGAATTATGTGG
16713564 TCTGAGCTCAT-AATATATGTG
1 TCTGAGCTCATGAAT-TATGTG
16713585 ACACATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGAATTATGTGG
Found at i:16727211 original size:20 final size:20
Alignment explanation
Indices: 16727174--16727213 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16727164 TTTTAAGCAG
*
16727174 AGTTACGAGTTTTTAACACA
1 AGTTACGAGTTTTAAACACA
16727194 AGTTAC-AGTTTTCAAACACA
1 AGTTACGAGTTTT-AAACACA
16727214 CTACCATGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTTACGAGTTTTAAACACA
Found at i:16754318 original size:17 final size:17
Alignment explanation
Indices: 16754298--16754340 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
16754288 ATGCATAATC
*
16754298 ATAGTTCATTCAATATA
1 ATAGTTCATACAATATA
16754315 ATAGTTCATACAATATA
1 ATAGTTCATACAATATA
*
16754332 ATAATTCAT
1 ATAGTTCAT
16754341 CCATCCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (17 bp):
ATAGTTCATACAATATA
Found at i:16754335 original size:20 final size:18
Alignment explanation
Indices: 16754277--16754340 Score: 62
Period size: 17 Copynumber: 3.7 Consensus size: 18
16754267 GTTCGCATAA
* *
16754277 AATAACAGTTCATGC-AT
1 AATAATAGTTCATACAAT
* *
16754294 AATCATAGTTCATTCAAT
1 AATAATAGTTCATACAAT
16754312 -ATAATAGTTCATACAAT
1 AATAATAGTTCATACAAT
*
16754329 -ATAATAATTCAT
1 AATAATAGTTCAT
16754341 CCATCCCACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
17 38 0.95
18 2 0.05
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (18 bp):
AATAATAGTTCATACAAT
Found at i:16755310 original size:31 final size:33
Alignment explanation
Indices: 16755267--16755341 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
16755257 CGCTAGCATT
*
16755267 ACAAAACCCATATA-CATATATATTATATA-AA
1 ACAAGACCCATATAGCATATATATTATATATAA
16755298 ACAAGACCCATATATGCATATATATTATATATAA
1 ACAAGACCCATATA-GCATATATATTATATATAA
*
16755332 TCAAGACCCA
1 ACAAGACCCA
16755342 CACATATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
31 13 0.33
33 15 0.38
34 11 0.28
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (33 bp):
ACAAGACCCATATAGCATATATATTATATATAA
Found at i:16755355 original size:35 final size:33
Alignment explanation
Indices: 16755278--16755357 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
16755268 CAAAACCCAT
* *
16755278 ATACATATATATTATATAAAACAAGACCCATAT
1 ATACATATATATTATATAAAACAAGACCCACAC
* *
16755311 ATGCATATATATTATATATAATCAAGACCCACAC
1 ATACATATATATTATATA-AAACAAGACCCACAC
*
16755345 ATATATTATATAT
1 ATACA-TATATAT
16755358 ACATACCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 17 0.44
34 15 0.38
35 7 0.18
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (33 bp):
ATACATATATATTATATAAAACAAGACCCACAC
Found at i:16762289 original size:21 final size:21
Alignment explanation
Indices: 16762265--16762312 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
16762255 TTCATAAAAA
16762265 TTCA-AAAAAAATAATATGGAG
1 TTCATAAAAAAA-AATATGGAG
*
16762286 TTCATAAAAAAAAATATTGAG
1 TTCATAAAAAAAAATATGGAG
*
16762307 TGCATA
1 TTCATA
16762313 TGGATTGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.54, C:0.06, G:0.12, T:0.27
Consensus pattern (21 bp):
TTCATAAAAAAAAATATGGAG
Found at i:16762771 original size:17 final size:16
Alignment explanation
Indices: 16762729--16762771 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
16762719 GTAATGAGTA
16762729 ATTTTTTTTATATAAT
1 ATTTTTTTTATATAAT
16762745 ATTTATTTTTACTCATAAT
1 ATTT-TTTTTA-T-ATAAT
16762764 -TTTTTTTT
1 ATTTTTTTT
16762772 GTTTAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.17
17 11 0.46
18 4 0.17
19 5 0.21
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTTTATATAAT
Found at i:16766464 original size:3 final size:3
Alignment explanation
Indices: 16766458--16766488 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
16766448 TAGCAAAGAA
16766458 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
16766489 GGAAACATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:16767445 original size:7 final size:8
Alignment explanation
Indices: 16767419--16767444 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16767409 CATTTTGTAC
16767419 TTTAAATT
1 TTTAAATT
16767427 TTTAAATT
1 TTTAAATT
16767435 TTTAAATT
1 TTTAAATT
16767443 TT
1 TT
16767445 AGTTATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTAAATT
Found at i:16773083 original size:27 final size:27
Alignment explanation
Indices: 16773053--16773256 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
16773043 ATATTGAGTC
* * * *
16773053 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16773080 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16773107 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
16773135 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16773162 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16773188 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16773215 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16773242 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16773257 GTACAATTTA
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
26 23 0.15
27 111 0.70
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16781151 original size:27 final size:27
Alignment explanation
Indices: 16781121--16781325 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
16781111 ATATTGAGTC
* * * *
16781121 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16781148 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16781175 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16781203 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16781230 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16781257 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16781284 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16781311 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16781326 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16789190 original size:27 final size:27
Alignment explanation
Indices: 16789160--16789361 Score: 248
Period size: 27 Copynumber: 7.6 Consensus size: 27
16789150 ATATTGAGTC
* * * *
16789160 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16789187 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
16789214 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
16789241 CGCACACTTAGTGC-CCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16789267 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16789293 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16789320 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16789347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16789362 GTACAATTTA
Statistics
Matches: 155, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 45 0.29
27 110 0.71
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16792311 original size:47 final size:44
Alignment explanation
Indices: 16792006--16792307 Score: 236
Period size: 45 Copynumber: 6.5 Consensus size: 44
16791996 ATTGTTGATT
* *** * *
16792006 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTGA-GATG-TAGC-C
* *
16792053 -GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGATGTA--GCC
* * *
16792100 AGTGTAAGACATGT-TTGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATGT-AGCC
* *
16792145 AGTGTAAGACATATCTGGGACATGCA-CTGGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCT-TGAGATG-TAGCC
* * * *
16792191 AGTGT-AGACATATCTGGGACATGCACCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-TGAGATG-TAGCC
*
16792236 AGTGTAAGATCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATGT-AGCC
16792283 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
16792308 GCATTGGCAT
Statistics
Matches: 215, Mismatches: 22, Indels: 37
0.78 0.08 0.14
Matches are distributed among these distances:
45 74 0.34
46 48 0.22
47 65 0.30
48 27 0.13
49 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGTAGCC
Found at i:16797142 original size:9 final size:9
Alignment explanation
Indices: 16797130--16797186 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
16797120 TTTGATAAAC
16797130 ATGATATGT
1 ATGATATGT
*
16797139 ATGATATGCAC
1 ATGATATG--T
*
16797150 ATGACATGT
1 ATGATATGT
*
16797159 ATGATATGCAC
1 ATGATATG--T
16797170 ATGATATGT
1 ATGATATGT
16797179 ATGATATG
1 ATGATATG
16797187 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:16797153 original size:20 final size:20
Alignment explanation
Indices: 16797128--16797193 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
16797118 ATTTTGATAA
16797128 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
16797148 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
16797168 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
16797188 ACATGA
1 ACATGA
16797194 GATATAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:16797175 original size:11 final size:11
Alignment explanation
Indices: 16797139--16797193 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
16797129 CATGATATGT
16797139 ATGATATGCAC
1 ATGATATGCAC
* *
16797150 ATGACATG--T
1 ATGATATGCAC
16797159 ATGATATGCAC
1 ATGATATGCAC
*
16797170 ATGATATG--T
1 ATGATATGCAC
16797179 ATGATATGCAC
1 ATGATATGCAC
16797190 ATGA
1 ATGA
16797194 GATATAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:16804687 original size:25 final size:25
Alignment explanation
Indices: 16804658--16804705 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16804648 TTATAATATG
* * *
16804658 AAAATGATCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
16804683 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
16804706 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:16804756 original size:9 final size:9
Alignment explanation
Indices: 16804744--16804800 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
16804734 TTTGATAAAC
16804744 ATGATATGT
1 ATGATATGT
*
16804753 ATGATATGCAC
1 ATGATATG--T
*
16804764 ATGACATGT
1 ATGATATGT
*
16804773 ATGATATGCAC
1 ATGATATG--T
16804784 ATGATATGT
1 ATGATATGT
16804793 ATGATATG
1 ATGATATG
16804801 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:16804767 original size:20 final size:20
Alignment explanation
Indices: 16804742--16804812 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
16804732 ATTTTGATAA
16804742 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
16804762 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
16804782 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
16804802 ACATGAGATGT
1 ACATGATATGT
16804813 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:16804789 original size:11 final size:11
Alignment explanation
Indices: 16804753--16804807 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
16804743 CATGATATGT
16804753 ATGATATGCAC
1 ATGATATGCAC
* *
16804764 ATGACATG--T
1 ATGATATGCAC
16804773 ATGATATGCAC
1 ATGATATGCAC
*
16804784 ATGATATG--T
1 ATGATATGCAC
16804793 ATGATATGCAC
1 ATGATATGCAC
16804804 ATGA
1 ATGA
16804808 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:16804893 original size:24 final size:24
Alignment explanation
Indices: 16804857--16804986 Score: 190
Period size: 24 Copynumber: 5.4 Consensus size: 24
16804847 GGAGGAAGTG
16804857 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTTTGCCCCAGTTAT
* *
16804881 TAAAAGGGATTTTGCCCTAGTTAT
1 TAAAAGGGCTTTTGCCCCAGTTAT
16804905 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTTTGCCCCAGTTAT
* *
16804929 CAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTTTGCCCCAGTTAT
* *
16804953 CAAAAAGGCTTTT-CCCCAGTTAT
1 TAAAAGGGCTTTTGCCCCAGTTAT
16804976 TAAAAGAGGCT
1 TAAAAG-GGCT
16804987 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
23 14 0.15
24 81 0.85
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (24 bp):
TAAAAGGGCTTTTGCCCCAGTTAT
Found at i:16805231 original size:31 final size:31
Alignment explanation
Indices: 16805193--16805256 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
16805183 CGTTTACAGT
16805193 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
16805224 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
16805255 AA
1 AA
16805257 TATAAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:16808766 original size:24 final size:22
Alignment explanation
Indices: 16808737--16808814 Score: 79
Period size: 24 Copynumber: 3.5 Consensus size: 22
16808727 CTGTATACTA
16808737 CCTTTGTGGCTTATTCTAATTTGG
1 CCTTTGTGGC-TATTCT-ATTTGG
* *
16808761 CCTTTGTTGC-ATTCT-TTTAG
1 CCTTTGTGGCTATTCTATTTGG
*
16808781 CCTTAGTGGCGTATTCTGATTTGG
1 CCTTTGTGGC-TATTCT-ATTTGG
16808805 CCTTTGTGGC
1 CCTTTGTGGC
16808815 ATTTTGTTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 12 0.27
22 10 0.23
24 22 0.50
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.47
Consensus pattern (22 bp):
CCTTTGTGGCTATTCTATTTGG
Found at i:16808796 original size:44 final size:44
Alignment explanation
Indices: 16808737--16808834 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
16808727 CTGTATACTA
* *
16808737 CCTTTGTGGCTTATTCTAATTTGGCCTTTGTTGCATTCTT-TTAG
1 CCTTTGTGGCGTATTCTAATTTGGCCTTTGTGGCATT-TTGTTAG
* *
16808781 CCTTAGTGGCGTATTCTGATTTGGCCTTTGTGGCATTTTGTTAG
1 CCTTTGTGGCGTATTCTAATTTGGCCTTTGTGGCATTTTGTTAG
*
16808825 ACTTTGTGGC
1 CCTTTGTGGC
16808835 ATACTCTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 2 0.04
44 45 0.96
ACGTcount: A:0.11, C:0.17, G:0.23, T:0.48
Consensus pattern (44 bp):
CCTTTGTGGCGTATTCTAATTTGGCCTTTGTGGCATTTTGTTAG
Found at i:16810075 original size:14 final size:15
Alignment explanation
Indices: 16810042--16810077 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
16810032 GGATTATATT
16810042 ATTACAAAAGGAAAG
1 ATTACAAAAGGAAAG
*
16810057 TTTACAAAA-GAAAG
1 ATTACAAAAGGAAAG
16810071 ATTACAA
1 ATTACAA
16810078 GGAGGGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.19
Consensus pattern (15 bp):
ATTACAAAAGGAAAG
Found at i:16813218 original size:25 final size:25
Alignment explanation
Indices: 16813146--16813206 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
16813136 ACGAGATTTA
16813146 AATTACTCACATGAGTTGTGAATGT
1 AATTACTCACATGAGTTGTGAATGT
* *
16813171 AATTGCTTACATGAGTTGTGAATGT
1 AATTACTCACATGAGTTGTGAATGT
16813196 AATTACTCACA
1 AATTACTCACA
16813207 CGAGATATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (25 bp):
AATTACTCACATGAGTTGTGAATGT
Found at i:16815734 original size:26 final size:26
Alignment explanation
Indices: 16815705--16815809 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
16815695 TGATACAAAT
16815705 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16815731 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16815757 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16815783 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16815809 T
1 T
16815810 AATGGGAATT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:16822830 original size:26 final size:26
Alignment explanation
Indices: 16822801--16822908 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
16822791 TGATACAAAT
16822801 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16822827 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16822853 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16822879 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16822905 TGAT
1 TGAT
16822909 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:16832863 original size:20 final size:20
Alignment explanation
Indices: 16832838--16832876 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16832828 TTAAAAAGGT
* *
16832838 AAATAAAGATAAAAGTAAAC
1 AAATAAAAATAAAAATAAAC
16832858 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
16832877 GTAAAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAC
Found at i:16839171 original size:13 final size:13
Alignment explanation
Indices: 16839150--16839190 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
16839140 GCTCGACAGG
16839150 GACAAGCCCGTGT
1 GACAAGCCCGTGT
*
16839163 GACACGCCCGTGT
1 GACAAGCCCGTGT
* *
16839176 GACATGCCTGTGT
1 GACAAGCCCGTGT
16839189 GA
1 GA
16839191 GGTGGCTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (13 bp):
GACAAGCCCGTGT
Found at i:16854968 original size:119 final size:120
Alignment explanation
Indices: 16854786--16855008 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
16854776 TCCTCGTTCA
*
16854786 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
16854851 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
16854906 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
16854968 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
16855009 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:16855008 original size:40 final size:40
Alignment explanation
Indices: 16854784--16855008 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
16854774 GCTCCTCGTT
* *
16854784 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16854824 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16854864 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16854904 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
16854943 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
16854984 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16855009 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:16862792 original size:119 final size:120
Alignment explanation
Indices: 16862608--16862832 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
16862598 GCTCCTCGTT
*
16862608 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
16862673 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
16862728 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
16862790 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
16862833 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:16862832 original size:40 final size:40
Alignment explanation
Indices: 16862608--16862832 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
16862598 GCTCCTCGTT
* *
16862608 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16862648 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16862688 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
16862728 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
16862767 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
16862808 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16862833 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:16870695 original size:119 final size:120
Alignment explanation
Indices: 16870511--16870735 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
16870501 GCTCCTCGTT
*
16870511 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
16870576 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
16870631 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
16870693 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
16870736 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:16870735 original size:40 final size:40
Alignment explanation
Indices: 16870511--16870735 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
16870501 GCTCCTCGTT
* *
16870511 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16870551 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16870591 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
16870631 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
16870670 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
16870711 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16870736 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:16876877 original size:55 final size:53
Alignment explanation
Indices: 16876757--16877051 Score: 292
Period size: 55 Copynumber: 5.5 Consensus size: 53
16876747 ATAAGGATAT
* * * ** * * *
16876757 CATGTAAGACCATGCCGAGGCATGAAATTGATAAGTTCTATAAGGC-AAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGCAAAGG-TAC
* *
16876811 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAG-T-TCATAAGGCAAAGGTAC
* * * *
16876866 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC-AAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAAGG-TAC
* *
16876919 CATGTAAGACCATGTCAAGACATGGCTTTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAAGGTAC
* * * * * *
16876974 CATGTAAGACCATGCCAAGGCATGGCTTTGGTGAGTTCATAA-GTAAAGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAAGGTAC
*
16877026 CACGTAAGACCATGTCAAGA-ATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
16877052 ATGGTAAATT
Statistics
Matches: 202, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
51 5 0.02
52 28 0.14
53 46 0.23
54 32 0.16
55 82 0.41
56 9 0.04
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAAGGTAC
Found at i:16876950 original size:108 final size:108
Alignment explanation
Indices: 16876757--16877051 Score: 450
Period size: 108 Copynumber: 2.7 Consensus size: 108
16876747 ATAAGGATAT
* ** * * *
16876757 CATGTAAGACCATGCCGAGGCATGAAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTC-ATAAGGCAAGGATACCATGTAAGACC
*
16876822 ATGTCAAGACATGGCATTGATGAGTTATTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
16876866 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCA
*
16876931 TGTCAAGACATGGCTTTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * * *
16876974 CATGTAAGACCATGCCAAGGCATGGCTTTGGTGAGTTCATAA-GTAAAGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCA
16877038 TGTCAAGA-ATGGCA
66 TGTCAAGACATGGCA
16877052 ATGGTAAATT
Statistics
Matches: 172, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
106 5 0.03
107 27 0.16
108 106 0.62
109 34 0.20
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:16882903 original size:55 final size:52
Alignment explanation
Indices: 16882772--16883032 Score: 181
Period size: 55 Copynumber: 4.8 Consensus size: 52
16882762 GATATCGTGC
* ** **
16882772 AAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGTAAA-GAAATCATGT
1 AAGACCATGCCAA-GCATGGCATTGATGAGTACTATAAGG-AAAGGTCA-CATGT
* ** * * *
16882826 ATGGTCATGTCC-AGACATGGCATTAATGAGCTACTAGAAGGAAAAGGTCATATGT
1 AAGACCATG-CCAAG-CATGGCATTGATGAG-TACTATAAGG-AAAGGTCACATGT
* * *
16882881 AAGACCATGCCAGAGCATGGCATTGGTGAGTTC-ATAAGGCAAGGAT-ACCATGT
1 AAGACCATGCCA-AGCATGGCATTGATGAGTACTATAAGGAAAGG-TCA-CATGT
* * *
16882934 AAGACCAAGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGT
1 AAGACCATGCCAAG-CATGGCATTGATGAG-TACTATAAGG-AAAGGTCACATGT
* * *
16882989 AAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGG
1 AAGACCATGCCAA-GCATGGCATTGATGAGTACTATAAGGAAAGG
16883033 ATACCACGTA
Statistics
Matches: 161, Mismatches: 32, Indels: 30
0.72 0.14 0.13
Matches are distributed among these distances:
52 11 0.07
53 41 0.25
54 28 0.17
55 72 0.45
56 9 0.06
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (52 bp):
AAGACCATGCCAAGCATGGCATTGATGAGTACTATAAGGAAAGGTCACATGT
Found at i:16882938 original size:53 final size:52
Alignment explanation
Indices: 16882877--16883045 Score: 232
Period size: 53 Copynumber: 3.2 Consensus size: 52
16882867 AAAAGGTCAT
16882877 ATGTAAGACCATGCCAGAGCATGGCATTGGTGAGTTCATAAGGCAAGGATACC
1 ATGTAAGACCATGCCA-AGCATGGCATTGGTGAGTTCATAAGGCAAGGATACC
* * * *
16882930 ATGTAAGACCAAGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCC
1 ATGTAAGACCATGCCAAG-CATGGCATTGGTGAGTT-C-ATAAGGC-AAGGATACC
16882985 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACC
1 ATGTAAGACCATGCCAA-GCATGGCATTGGTGAGTTCATAAGGCAAGGATACC
*
16883038 ACGTAAGA
1 ATGTAAGA
16883046 GTAATCCAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
52 6 0.06
53 47 0.47
54 2 0.02
55 41 0.41
56 5 0.05
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (52 bp):
ATGTAAGACCATGCCAAGCATGGCATTGGTGAGTTCATAAGGCAAGGATACC
Found at i:16882963 original size:108 final size:108
Alignment explanation
Indices: 16882772--16883045 Score: 343
Period size: 108 Copynumber: 2.5 Consensus size: 108
16882762 GATATCGTGC
* * * * * * * * * ** *
16882772 AAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGTAAAGAAATCATGTATGGTCATGTC
1 AAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAGGATACCACGTAAGACCAAGTC
* *
16882837 CAGACATGGCATTAATGAGCTACTAGAAGGAAAAGGTCATATGT
65 AAGACATGGCATTAATGAGCTACTAGAAGGAAAAGGTCACATGT
*
16882881 AAGACCATGCC-AGAGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAAGTC
1 AAGACCATGCCAAG-GCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCAAGTC
* * * * *
16882945 AAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGT
65 AAGACATGGCATTAATGAGCTACTAGAAGGAAAAGGTCACATGT
16882989 AAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGA
1 AAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGA
16883046 GTAATCCAAA
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
108 117 0.81
109 27 0.19
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (108 bp):
AAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCAAGTCA
AGACATGGCATTAATGAGCTACTAGAAGGAAAAGGTCACATGT
Found at i:16898982 original size:17 final size:19
Alignment explanation
Indices: 16898954--16898988 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
16898944 GCTAACAAAT
16898954 CATCATCAAATTT-TTGAG
1 CATCATCAAATTTATTGAG
16898972 CATCA-CAAATTTATTGA
1 CATCATCAAATTTATTGA
16898989 ACAAATAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
CATCATCAAATTTATTGAG
Found at i:16903373 original size:47 final size:47
Alignment explanation
Indices: 16903319--16903747 Score: 635
Period size: 47 Copynumber: 9.1 Consensus size: 47
16903309 TTAGGATTTT
** * * **
16903319 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
16903366 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
16903413 ATGTGATGAATGTGAACATGCATATATGTGGTAAGGTCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
16903460 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
16903507 ATATGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
16903554 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
16903601 ATGTGATGAATGTGAACATGCATATGTGTGATTAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
16903648 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
16903695 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
16903742 ATGTGA
1 ATGTGA
16903748 AATGTGTATG
Statistics
Matches: 353, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 350 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:16903560 original size:22 final size:22
Alignment explanation
Indices: 16903532--16903607 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
16903522 ACATGCATAT
16903532 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
16903554 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
16903578 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
16903601 ATGTGAT
1 ATGTGAT
16903608 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:16903778 original size:46 final size:46
Alignment explanation
Indices: 16903718--16903900 Score: 303
Period size: 46 Copynumber: 4.0 Consensus size: 46
16903708 GGAAGTGTAT
* *
16903718 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
16903764 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
16903810 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
16903856 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
16903901 TGTATATATA
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 130 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:16905443 original size:40 final size:40
Alignment explanation
Indices: 16905388--16905702 Score: 506
Period size: 40 Copynumber: 7.9 Consensus size: 40
16905378 ATTGAGAGTT
16905388 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
16905428 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
16905468 TTATATCCGGGCTAAGTCCCGAACAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
16905508 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
16905548 ATATATCCGGGCTAAGTCCCGAACAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
16905588 TTATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
16905628 ATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
16905668 ATATATCCGGGCTAAATCTCGAAG-GCATTCATGCT
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
16905703 GAAATTATAA
Statistics
Matches: 256, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 10 0.04
40 246 0.96
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:16905800 original size:57 final size:57
Alignment explanation
Indices: 16905712--16905867 Score: 215
Period size: 57 Copynumber: 2.7 Consensus size: 57
16905702 TGAAATTATA
* * * * *
16905712 AGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGT-TCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGT-CAGATCAGTAATTG
* **
16905769 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAATTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTCAGATCAGTAATTG
*
16905826 AGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTG
16905868 CGAAATCAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
57 88 0.99
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTCAGATCAGTAATTG
Found at i:16905809 original size:28 final size:27
Alignment explanation
Indices: 16905771--16905870 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 27
16905761 AGTAGTTGAG
16905771 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* ** *
16905799 GCACTATGTGTGTGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
16905827 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
16905856 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
16905871 AATCAGTCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
28 37 0.61
29 24 0.39
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:16910020 original size:47 final size:47
Alignment explanation
Indices: 16909966--16910270 Score: 272
Period size: 47 Copynumber: 6.2 Consensus size: 47
16909956 TTAGGATTTT
** * *
16909966 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
* *
16910013 ATGTGATGAATGTGAACATGCATATATGAGACAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
* * * *
16910060 ATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGTTGAGATAAGGCCGA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCC---GA-AT---GACAA
* * *
16910114 ATG-GCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTG---A--T---GAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
* * * *
16910168 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
* * * *
16910215 ATGTGAT-AATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
16910261 ATGTGATGAA
1 ATGTGATGAA
16910271 CGTGGAAGTG
Statistics
Matches: 224, Mismatches: 17, Indels: 34
0.81 0.06 0.12
Matches are distributed among these distances:
46 44 0.20
47 124 0.55
50 3 0.01
51 2 0.01
52 1 0.00
53 1 0.00
54 12 0.05
55 1 0.00
56 1 0.00
57 2 0.01
58 3 0.01
61 30 0.13
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACAA
Found at i:16910111 original size:61 final size:61
Alignment explanation
Indices: 16910039--16910159 Score: 215
Period size: 61 Copynumber: 2.0 Consensus size: 61
16910029 CATGCATATA
*
16910039 TGAGACAAGGCCGAATGACCAATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGT
1 TGAGACAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGT
* *
16910100 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 TGAGACAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
16910160 AATGGCCAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (61 bp):
TGAGACAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGT
Found at i:16910181 original size:108 final size:108
Alignment explanation
Indices: 16909992--16910206 Score: 376
Period size: 108 Copynumber: 2.0 Consensus size: 108
16909982 TGTGTATATA
16909992 TGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGACAAGGCCGAATGA
1 TGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGACAAGGCCGAATGA
*
16910057 CCAATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGT
66 CCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGT
* * * *
16910100 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGG
1 TGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGACAAGGCCGAATGA
*
16910165 CCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
66 CCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
16910207 AATGGCCAAT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (108 bp):
TGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGACAAGGCCGAATGA
CCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGT
Found at i:16910244 original size:46 final size:47
Alignment explanation
Indices: 16910103--16910305 Score: 311
Period size: 47 Copynumber: 4.3 Consensus size: 47
16910093 AGGCCGTTGA
16910103 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
*
16910150 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
16910197 GATAAGGCCGAATGGCCAATGTGAT-AATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
* * * *
16910243 GATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATATGT
* * *
16910290 GGTAAAGTCGAATGGC
1 GATAAGGCCGAATGGC
16910306 TAATCCGAAA
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
46 44 0.31
47 97 0.67
48 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
Found at i:16910302 original size:93 final size:94
Alignment explanation
Indices: 16910103--16910305 Score: 302
Period size: 93 Copynumber: 2.2 Consensus size: 94
16910093 AGGCCGTTGA
* *
16910103 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
* *
16910168 ATGTGATGAATGTGAACATGCATATGTGT
66 ATGTGATGAACGTGAACATGCATATATGT
*
16910197 GATAAGGCCGAATGGCCAATGTGAT-AATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 GATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
* *
16910261 ATGTGATGAACGTGGAA-GTGTATATATGT
66 ATGTGATGAACGT-GAACATGCATATATGT
* *
16910290 GGTAAAGTCGAATGGC
1 GATAAAGCCGAATGGC
16910306 TAATCCGAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
93 72 0.72
94 28 0.28
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (94 bp):
GATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
ATGTGATGAACGTGAACATGCATATATGT
Found at i:16910334 original size:93 final size:92
Alignment explanation
Indices: 16910144--16910451 Score: 243
Period size: 93 Copynumber: 3.3 Consensus size: 92
16910134 GAACATGCAT
* * * * * *
16910144 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCCGA
1 ATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTG-ATATATGTGGTAAAGCCGA
* * * *
16910208 ATGGCCAATGTGATAATGTG-A--ACATGCAT
64 ATGGCTAATGCGA-AATGTGTATGAGATG--G
*
16910237 ATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGTAAAGTCGAA
1 ATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTG-ATATATGTGGTAAAGCCGAA
*
16910302 TGGCTAATCCGAAATGTGTATGAGATGG
65 TGGCTAATGCGAAATGTGTATGAGATGG
* * * * * * * * * * *
16910330 ATATGAGGTAAAGCCGAATGGCTAATGCGA--AACGTGTATGAGATGGATATGAGGTAATGCCGA
1 ATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGAT--ATATGTGGTAAAGCCGA
*
16910393 ATGGCTAATGCGAAACGTGTATGAGATGG
64 ATGGCTAATGCGAAATGTGTATGAGATGG
* * *
16910422 ATATGTGGTAAAGCCA-AATGGCTAATGTGA
1 ATATGTGAT-AAGGCAGAATGGCCAATGTGA
16910452 GATATGTATG
Statistics
Matches: 176, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
90 2 0.01
91 9 0.05
92 68 0.39
93 90 0.51
94 3 0.02
95 4 0.02
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (92 bp):
ATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGATATATGTGGTAAAGCCGAAT
GGCTAATGCGAAATGTGTATGAGATGG
Found at i:16910340 original size:46 final size:46
Alignment explanation
Indices: 16910284--16910466 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
16910274 GGAAGTGTAT
* * * *
16910284 ATATGTGGTAAAGTCGAATGGCTAATCCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
16910330 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
16910376 ATATGAGGTAATGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
16910422 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
16910467 TGTATATATA
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:16910573 original size:100 final size:101
Alignment explanation
Indices: 16910460--16910664 Score: 367
Period size: 102 Copynumber: 2.0 Consensus size: 101
16910450 GAGATATGTA
*
16910460 TGAGATGTG-TATATATATTGTGGCCAAATGACAAACGGCGGAAGGTGTGTTTTATTAGATATTT
1 TGAGATGTGATATATATATTGTGGCCAAATGACAAACGGCAGAAGGTGTGTTTTATTAGATATTT
16910524 GATGAGGTAAATGAATTACAAATATGATAGTCGATG
66 GATGAGGTAAATGAATTACAAATATGATAGTCGATG
* *
16910560 TGAGATGTGTATATATATATTGTGGCCAACTGACAAACGGCAGAATGTGTGTTTTATTAGATATT
1 TGAGATGTG-ATATATATATTGTGGCCAAATGACAAACGGCAGAAGGTGTGTTTTATTAGATATT
16910625 TGATGAGGTAAATGAATTACAAATATGATAGTCGATG
65 TGATGAGGTAAATGAATTACAAATATGATAGTCGATG
16910662 TGA
1 TGA
16910665 ATTTTTTAAC
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
100 9 0.09
102 91 0.91
ACGTcount: A:0.34, C:0.07, G:0.25, T:0.34
Consensus pattern (101 bp):
TGAGATGTGATATATATATTGTGGCCAAATGACAAACGGCAGAAGGTGTGTTTTATTAGATATTT
GATGAGGTAAATGAATTACAAATATGATAGTCGATG
Found at i:16912603 original size:45 final size:44
Alignment explanation
Indices: 16912350--16912608 Score: 219
Period size: 45 Copynumber: 5.9 Consensus size: 44
16912340 ATATAGAACA
* * * *
16912350 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTCA-A-ATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACATG-AAACACATATATCG
* * *
16912393 ATGCC-ACTGTCCCAAACAG-GGTCTTACATG-AA-TCA-ATA-CG
1 ATGCCAAC-GTCCCAGA-TGTGGTCTTACATGAAACACATATATCG
* * * ** * *
16912433 ATGCCGATGTCTCAGACATGGTCTTACACGTAACAACATATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACATGAAAC-ACATATATCG
16912478 ATGCCAACGTCCCAGATGTGGTCTTACATGAAAACACATATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACATG-AAACACATATATCG
** *
16912523 ATGCCAACGTCCCAGATGTGGTCTTACACAAAAACATATATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACA-TGAAACACATATATCG
** *
16912568 ATGCCAACGTCATAGACGTGGTCTTACATTGAAACACATAT
1 ATGCCAACGTCCCAGATGTGGTCTTACA-TGAAACACATAT
16912609 CAGAATCCTA
Statistics
Matches: 177, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
40 27 0.15
41 5 0.03
42 2 0.01
43 25 0.14
44 4 0.02
45 111 0.63
46 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGATGTGGTCTTACATGAAACACATATATCG
Found at i:16913489 original size:25 final size:26
Alignment explanation
Indices: 16913461--16913515 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
16913451 TTAATTTATG
16913461 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
16913486 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
16913511 TTATA
1 TTATA
16913516 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:16916080 original size:40 final size:40
Alignment explanation
Indices: 16916022--16916198 Score: 219
Period size: 40 Copynumber: 4.4 Consensus size: 40
16916012 AATTATTGTA
* * * *
16916022 TGAATGTACATACATGTCCCTATTTGTACTTAGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * *
16916062 TGAATGCACATACGTGTCCTTGTTTGTACTCCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
16916102 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
16916142 TGAATGCACATACATGCCCCTGTTTGTACTTCGATACTCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
16916182 TGAAGGCATATACATGC
1 TGAATGCACATACATGC
16916199 TCTTGATTTT
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:16917699 original size:22 final size:22
Alignment explanation
Indices: 16917671--16917712 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
16917661 CAAAACACGT
16917671 CATTTAT-CATACATACTTCATA
1 CATTTATGCATACATA-TTCATA
*
16917693 CATTTATGCATTCATATTCA
1 CATTTATGCATACATATTCA
16917713 AATACCGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.43
Consensus pattern (22 bp):
CATTTATGCATACATATTCATA
Found at i:16923366 original size:56 final size:56
Alignment explanation
Indices: 16923306--16923516 Score: 332
Period size: 56 Copynumber: 3.8 Consensus size: 56
16923296 CCCCAGACAA
* * * *
16923306 GGTCTTACTCGTACACATATATCGGAGTCATATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
*
16923362 GGTCTTACTCGCACACATATATCGAAGTCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* *
16923418 GGTCTTACTTGCACACATATATCGAAGTCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* * *
16923474 GGACTTACTCGCACATATATATCGGAGTCACATATCGATGCCA
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCA
16923517 CATATACTTC
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 144 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:16924470 original size:14 final size:14
Alignment explanation
Indices: 16924451--16924477 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16924441 TCACGTTGTG
16924451 AAAATAAAAATAAT
1 AAAATAAAAATAAT
16924465 AAAATAAAAATAA
1 AAAATAAAAATAA
16924478 AATAAAGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAAAATAAT
Found at i:16930324 original size:45 final size:45
Alignment explanation
Indices: 16930260--16930349 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
16930250 ATTTGTTGTG
16930260 GCAAATTAAGCTCTTTTCAACACTTAATGGGCTCGTGTTTATGTA
1 GCAAATTAAGCTCTTTTCAACACTTAATGGGCTCGTGTTTATGTA
16930305 GCAAATTAAGCTCTTTTCAACACTTAATGGGCTCGTGTTTATGTA
1 GCAAATTAAGCTCTTTTCAACACTTAATGGGCTCGTGTTTATGTA
16930350 ATATGTTAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (45 bp):
GCAAATTAAGCTCTTTTCAACACTTAATGGGCTCGTGTTTATGTA
Done.