Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 59 of 332
Found at i:17543605 original size:20 final size:19
Alignment explanation
Indices: 17543565--17543606 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
17543555 CCCTATAGTT
* *
17543565 CAAAATTTTCAACTTTTTC
1 CAAAATTTTCAAATGTTTC
17543584 CAAAATTTTCCAAATGTTTC
1 CAAAATTTT-CAAATGTTTC
17543604 CAA
1 CAA
17543607 TTTAGTCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (19 bp):
CAAAATTTTCAAATGTTTC
Found at i:17549107 original size:49 final size:49
Alignment explanation
Indices: 17549050--17549283 Score: 261
Period size: 49 Copynumber: 4.7 Consensus size: 49
17549040 ATCTAGTATG
* ** *
17549050 CATAGTAGCCTGCATTTAGTACTACACTTGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* * * ** * *
17549099 CGTAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACA
* * * * *
17549149 CATAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
*
17549200 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* * *
17549249 CGTAGTAGCCTGCACTTAGTACTATACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
17549284 TCACAATAGA
Statistics
Matches: 152, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 70 0.46
50 44 0.29
51 38 0.25
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
Found at i:17549278 original size:100 final size:101
Alignment explanation
Indices: 17549101--17549281 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
17549091 CCAGTACACG
* * *
17549101 TAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
17549166 AGTACTATACACGTGATCGAAGTTATCGGGTACGCA
66 AGTACTATACACGTGATCGAAGTTATCGGGTACGCA
* ** * *
17549202 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
17549266 AGTACTATACACGTGA
66 AGTACTATACACGTGA
17549282 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 42 0.58
101 30 0.42
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
AGTACTATACACGTGATCGAAGTTATCGGGTACGCA
Found at i:17553149 original size:32 final size:32
Alignment explanation
Indices: 17553108--17553174 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
17553098 TACCAACAAG
*
17553108 AAAAAAAATCAAACCTTGAGGAGATGCTAACA
1 AAAAAAAATCAAACCTTAAGGAGATGCTAACA
*
17553140 AAAAAAAATCGAACCTTAAGGAGATGCTAACA
1 AAAAAAAATCAAACCTTAAGGAGATGCTAACA
17553172 AAA
1 AAA
17553175 TTCATGTCGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.15
Consensus pattern (32 bp):
AAAAAAAATCAAACCTTAAGGAGATGCTAACA
Found at i:17561644 original size:12 final size:12
Alignment explanation
Indices: 17561627--17561658 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
17561617 GCTATTGAAA
17561627 TGGTGTAAGTGT
1 TGGTGTAAGTGT
17561639 TGGTGTAAGTGT
1 TGGTGTAAGTGT
17561651 TGGTGTAA
1 TGGTGTAA
17561659 ATAAGGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (12 bp):
TGGTGTAAGTGT
Found at i:17563496 original size:47 final size:47
Alignment explanation
Indices: 17563428--17563741 Score: 256
Period size: 47 Copynumber: 6.7 Consensus size: 47
17563418 TTTGTGTGCT
17563428 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
* * *
17563474 AGTGTAAGACCATGTCTGGGACATGGCATTGG-CA-TTTA-GACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACATTATG---AGAGCC
* *
17563522 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCC
* * * * *
17563568 AGTGTAAGA-CATGTCTGGGACATACATCGGCTACATGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
* * * * * * *
17563612 AGTGTAAGACCATATCTAGGACAAGGCATTGGCACAGATACATGAGAGTC
1 AGTGTAAGACCATGTCTGGGAC-ATGCATCGGC-CACAT-TATGAGAGCC
* * *
17563662 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTA-A-TGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CACATTATGAGAGCC
17563709 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
17563742 ATTATACCCG
Statistics
Matches: 215, Mismatches: 35, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
44 13 0.06
45 12 0.06
46 59 0.27
47 74 0.34
48 22 0.10
49 2 0.01
50 33 0.15
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
Found at i:17567353 original size:47 final size:46
Alignment explanation
Indices: 17567285--17567601 Score: 213
Period size: 47 Copynumber: 6.7 Consensus size: 46
17567275 TTTGTGTCCT
* * * *
17567285 AGTGTAAGACATGTTTAGGACAT-GTATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGA-GAGAGCC
*
17567331 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-TGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACATGAG---AGAGCC
* *
17567379 AGTGTAAGACATGTCTGGGACATGGCATCGG-CA-TTGAGACGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGAGA-G--AGCC
* * *
17567426 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTC--GAGATGTAAGAC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGAGA-G--AGCC
* * *
17567472 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-CATGAGATGTGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACATGAGA-GAGCC
* * * * *
17567518 AGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATGTGAAAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC-C--ACATGAGAGAGCC
* * *
17567568 AATGTAAGAGCATGTCTAGGACATGGCGTCGGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCC
17567602 TTAATCACGA
Statistics
Matches: 222, Mismatches: 29, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 1 0.00
45 2 0.01
46 67 0.30
47 85 0.38
48 32 0.14
49 1 0.00
50 29 0.13
51 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGAGAGAGCC
Found at i:17567445 original size:94 final size:93
Alignment explanation
Indices: 17567331--17567646 Score: 279
Period size: 94 Copynumber: 3.3 Consensus size: 93
17567321 TATGAGAGCC
*
17567331 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACAAGAGCTAGTGTAAGA-CATGTCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACTGAGACAAGAGC-AGTGTAAGACCATGTCT
17567395 GGGACATGGCATCGGCATTGAGACGAAAGCT
65 GGGACATGGCATCGGCATTGAGACG-AAG-T
*
17567426 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CTCGAGATGTAAGA-CAGTGTAAGACCATGT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACT-GAGA--CAAGAGCAGTGTAAGACCATGT
* * *
17567487 CTGGGACATGGCATCGACCA-TGAGATG-TGT
63 CTGGGACATGGCATCG-GCATTGAGACGAAGT
* * ** * *
17567517 CAGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATGTGAA-AGCCAATGTAAGAGCAT
1 -AGTGTAAGACCATGTTTGGGACATGGCATCGGCACTG--A-GACAAGAG-CAGTGTAAGACCAT
* * * * *
17567581 GTCTAGGACATGGCGTCGGCCTTAATCACGATAGTT
61 GTCTGGGACATGGCATCGGCATTGA-GACGA-AG-T
* *
17567617 AGTGTAAGAGCATGTTTGGTACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
17567647 AATTTGATGT
Statistics
Matches: 181, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
91 1 0.01
92 12 0.07
93 35 0.19
94 50 0.28
95 19 0.10
96 31 0.17
97 3 0.02
99 29 0.16
100 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCACTGAGACAAGAGCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATTGAGACGAAGT
Found at i:17567550 original size:46 final size:45
Alignment explanation
Indices: 17567330--17567548 Score: 214
Period size: 47 Copynumber: 4.7 Consensus size: 45
17567320 TTATGAGAGC
* *
17567330 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACAAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGAG--ATGAG
* * *
17567377 CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGAGACGAAAG
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGAGATG--AG
* *
17567424 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CTCGAGATGTAAG
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGCCACT-GAGATG--AG
*
17567470 ACAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGAGATGTG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCG-CCACTGAGATGAG
*
17567516 TCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCG
17567549 ACACAGATAT
Statistics
Matches: 152, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
45 3 0.02
46 57 0.38
47 69 0.45
48 21 0.14
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (45 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGAGATGAG
Found at i:17569236 original size:47 final size:47
Alignment explanation
Indices: 17569179--17569444 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 47
17569169 TATGAGAGCC
*
17569179 AGTGTAAAACCATGTCTGGGACATGGCATCGGCATCAAGATGAGTGCT
1 AGTGT-AAACCATGTCTGGGACATGGCATCGGCATCAAGACGAGTGCT
* * * *
17569227 GGTGTAAACCATGTCTGGGACATGGCATCAGTATCGAGACGAGTGCT
1 AGTGTAAACCATGTCTGGGACATGGCATCGGCATCAAGACGAGTGCT
* * * *
17569274 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAA-ACCATGTCTGGGACATGGCATCGGCATCAAGACG-AGTGCT
* * * * * * *
17569320 AGTGTAAGA-CATGTGTGGGATAT-ACATCAGCTAT-GAGATGA-TAGCG
1 AGTGTAA-ACCATGTCTGGGACATGGCATCGGC-ATCAAGACGAGT-GCT
* ** * * *
17569366 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGA-TATGAGCA
1 AGTGTAA-ACCATGTCTGGGACATGGCATCGGCATCAAGACGA-GTGCT
*
17569413 AGTGTAAGATCATGTCTGGGACATGGCATCGG
1 AGTGTAA-ACCATGTCTGGGACATGGCATCGG
17569445 TACCTCACCC
Statistics
Matches: 180, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.34
47 108 0.60
48 10 0.06
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAACCATGTCTGGGACATGGCATCGGCATCAAGACGAGTGCT
Found at i:17569417 original size:93 final size:95
Alignment explanation
Indices: 17569170--17569442 Score: 256
Period size: 93 Copynumber: 2.9 Consensus size: 95
17569160 TGGCCACATT
* * * * * **
17569170 ATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATCAAGATGA-GTGCTGGTGTAA
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGAT-ATGAGCAAGTGTAA
*
17569234 -ACCATGTCTGGGACATGGCATCAGTATCGAG
64 GACCATGTCTGGGACATGACATCAGTATCGAG
* * * ** * *
17569265 ACGAGT-GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCCAGTGTAA
1 ATGA-TAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATATGAGCAAGTGTAA
* *
17569327 GA-CATGTGTGGGATAT-ACATCAGCTAT-GAG
64 GACCATGTCTGGGACATGACATCAG-TATCGAG
* *
17569357 ATGATAGCGAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCAAGTGTAAGA
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGCAAGTGTAAGA
* *
17569422 TCATGTCTGGGACATGGCATC
66 CCATGTCTGGGACATGACATC
17569443 GGTACCTCAC
Statistics
Matches: 142, Mismatches: 26, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
91 1 0.01
92 23 0.16
93 67 0.47
94 34 0.24
95 17 0.12
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (95 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGCAAGTGTAAGA
CCATGTCTGGGACATGACATCAGTATCGAG
Found at i:17570068 original size:6 final size:6
Alignment explanation
Indices: 17570038--17570184 Score: 149
Period size: 6 Copynumber: 24.3 Consensus size: 6
17570028 AAGAAACATT
** * *
17570038 ATCAGA ATTGGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-A ATCAGA
*
17570086 ATCAGA ATCAGA ATCA-A TATTAGTA A-CAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA -ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
17570134 ATCAAA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
17570183 AT
1 AT
17570185 GTGAATGCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
5 6 0.05
6 103 0.89
7 5 0.04
8 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:17570161 original size:37 final size:36
Alignment explanation
Indices: 17570082--17570174 Score: 159
Period size: 37 Copynumber: 2.6 Consensus size: 36
17570072 GAATCAGTAA
*
17570082 CAGAATCAGAATCAGAATCAATATTAGTAACAGAAT
1 CAGAATCAGAATCAGAATCAAAATTAGTAACAGAAT
*
17570118 CAGAATCAGAATCAGAATCAAAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGAATCAAAATTA-GTAACAGAAT
17570155 CAGAATCAGAATCAGAATCA
1 CAGAATCAGAATCAGAATCA
17570175 GAATCAGAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
36 25 0.46
37 29 0.54
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.19
Consensus pattern (36 bp):
CAGAATCAGAATCAGAATCAAAATTAGTAACAGAAT
Found at i:17570350 original size:27 final size:26
Alignment explanation
Indices: 17570302--17570375 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
17570292 AGCATGCCTG
* * *
17570302 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
17570328 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
17570355 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
17570376 AACCCACCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:17570588 original size:22 final size:22
Alignment explanation
Indices: 17570535--17570598 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
17570525 TACAGGTAAA
*
17570535 TACGTTTGGCACGAAGCCATAGT
1 TACG-TTGGCACAAAGCCATAGT
* * * *
17570558 CAAGATGGCACAAAGCCATATT
1 TACGTTGGCACAAAGCCATAGT
* *
17570580 TACGTTGGCATAGAGCCAT
1 TACGTTGGCACAAAGCCAT
17570599 TAATAACGGG
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (22 bp):
TACGTTGGCACAAAGCCATAGT
Found at i:17570765 original size:27 final size:26
Alignment explanation
Indices: 17570686--17570768 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
17570676 TCGATCAGTC
* * *
17570686 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
17570712 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
17570739 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
17570766 AAC
1 AAC
17570769 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:17570997 original size:27 final size:27
Alignment explanation
Indices: 17570967--17571162 Score: 196
Period size: 27 Copynumber: 7.3 Consensus size: 27
17570957 GGGGCAAAAT
* * *
17570967 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTATAAGGGTATTTC
* *
17570994 GGTAATTCTATCCTA-CAGGAGTATTTC
1 GGTAATTCTACCCTATAAGG-GTATTTC
* * *
17571021 GGTATTTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
* * * *
17571048 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTATAAGGGTATTTC
*
17571075 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
* *
17571102 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
** * *
17571129 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
*
17571156 AGTAATT
1 GGTAATT
17571163 TCACAATCAA
Statistics
Matches: 138, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.02
27 133 0.96
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTATAAGGGTATTTC
Found at i:17571111 original size:81 final size:81
Alignment explanation
Indices: 17570985--17571162 Score: 250
Period size: 81 Copynumber: 2.2 Consensus size: 81
17570975 TACCCCATAA
* * * * *
17570985 GGGTATCTCGGTAATTCTATCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGTGTATTTCGA
1 GGGTATTTCGGTAATTCTATCCTAAAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
*
17571050 TAATTCTACCCTACAG
66 AAATTCTACCCTACAG
* * *
17571066 GGGTATTTTGGTAATTCTATCCTATAAGG-GTATTTCAGTAATTCTACCCTATAGGGGTATTTCG
1 GGGTATTTCGGTAATTCTATCCTA-AAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG
17571130 AAAATTCTACCCTACAG
65 AAAATTCTACCCTACAG
*
17571147 GGGTATTTCAGTAATT
1 GGGTATTTCGGTAATT
17571163 TCACAATCAA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 82 0.96
82 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTATCCTAAAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
AAATTCTACCCTACAG
Found at i:17571156 original size:54 final size:54
Alignment explanation
Indices: 17570967--17571162 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
17570957 GGGGCAAAAT
* * * * * * *
17570967 GGTAATTTTACCCCATAAGGGTATCTCGGTAATTCTATCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
17571021 GGTATTTCTACCCTACAAGTGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * *
17571075 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
** *
17571129 GAAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
17571163 TCACAATCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 118 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:17571197 original size:27 final size:27
Alignment explanation
Indices: 17571167--17571737 Score: 677
Period size: 27 Copynumber: 21.1 Consensus size: 27
17571157 GTAATTTCAC
*
17571167 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
17571194 AATCAAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
17571221 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
17571248 AATCAAGGGTAAAACGGTAATT-T-TA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
17571273 CGAATCGAGGGTAAAACGGTAATTCTATA
1 --AATCGAGGGTAAAACGGTAATTCTGTA
**
17571302 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
17571329 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
17571356 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
17571383 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
17571410 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
17571437 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
17571464 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
17571491 AATCAAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
17571518 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
17571545 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
17571572 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
17571599 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
17571626 AA-CTGAGGGTAAAACGTTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
17571653 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
17571680 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
17571707 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
17571734 AATC
1 AATC
17571738 AGGAGTACTT
Statistics
Matches: 477, Mismatches: 55, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
25 2 0.00
26 5 0.01
27 463 0.97
28 5 0.01
29 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:17574653 original size:57 final size:57
Alignment explanation
Indices: 17574584--17574698 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
17574574 ATTGTTAGTG
*
17574584 AAGAGGGGTTGGAACTATCAGAAAATGAAATAGGGGTGAATATAAAGAATAAACTGT
1 AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATATAAAGAATAAACTGT
* * *
17574641 AAGAGGGGTTGGAACTGTCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAGCTGT
1 AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATATAAAGAATAAACTGT
17574698 A
1 A
17574699 CTTATTGGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.43, C:0.06, G:0.30, T:0.21
Consensus pattern (57 bp):
AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATATAAAGAATAAACTGT
Found at i:17574666 original size:29 final size:29
Alignment explanation
Indices: 17574584--17574677 Score: 81
Period size: 28 Copynumber: 3.3 Consensus size: 29
17574574 ATTGTTAGTG
17574584 AAGAGGGGTTGGAACTATCAGAAAA-TGA
1 AAGAGGGGTTGGAACTATCAGAAAACTGA
* * *
17574612 AATAGGGG-T-GAA-TATAAAGAATAAACTGT
1 AAGAGGGGTTGGAACTAT-CAG-A-AAACTGA
*
17574641 AAGAGGGGTTGGAACTGTCAGAAAAC-GA
1 AAGAGGGGTTGGAACTATCAGAAAACTGA
*
17574669 AATAGGGGT
1 AAGAGGGGT
17574678 GAATTTAAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
25 3 0.06
26 5 0.10
27 2 0.04
28 19 0.37
29 13 0.25
30 2 0.04
31 5 0.10
32 2 0.04
ACGTcount: A:0.43, C:0.06, G:0.32, T:0.19
Consensus pattern (29 bp):
AAGAGGGGTTGGAACTATCAGAAAACTGA
Found at i:17575565 original size:19 final size:19
Alignment explanation
Indices: 17575525--17575567 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
17575515 GGGCTGAAGG
* *
17575525 CACGGGCGTGTCCAAGCCA
1 CACGGGCATGTCCAAACCA
17575544 CACGGGCATGT-CAAACCTA
1 CACGGGCATGTCCAAACC-A
17575563 CACGG
1 CACGG
17575568 CCAACCCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.26, C:0.35, G:0.28, T:0.12
Consensus pattern (19 bp):
CACGGGCATGTCCAAACCA
Found at i:17580797 original size:33 final size:33
Alignment explanation
Indices: 17580734--17580798 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
17580724 TTTGAGTACT
*
17580734 TAGATTAATAAAATGATTAAATTCGTGAATTTA
1 TAGATTAATAAAATGATTAAATTCATGAATTTA
*
17580767 TAGATTAATAAAATTATTAAATTCATGAATTT
1 TAGATTAATAAAATGATTAAATTCATGAATTT
17580799 TTATCATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.42
Consensus pattern (33 bp):
TAGATTAATAAAATGATTAAATTCATGAATTTA
Found at i:17581150 original size:47 final size:47
Alignment explanation
Indices: 17581080--17581346 Score: 200
Period size: 47 Copynumber: 5.7 Consensus size: 47
17581070 TTTGTGTGCT
17581080 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
*
17581126 AATGTAAGACCATGTCTGGGACATGACATCGG-C--ATTGA-GACAAGAG-C
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCCAAATT-ATG---AGAGTC
* * * * * *
17581173 TAGT-TCAGA-CATGACTGGGACATGCATCGGCTACATGAT-A-TGTC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
*
17581217 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-TACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CAAATTA--TGAGAGTC
* * ** *
17581267 AGTGTAAGACCATGTCTGGGACAAGGCATCGACTTAA-CATGAGAG-C
1 AGTGTAAGACCATGTCTGGGAC-ATGCATCGGCCAAATTATGAGAGTC
*
17581313 TAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
17581347 ATTATACCCT
Statistics
Matches: 176, Mismatches: 22, Indels: 45
0.72 0.09 0.19
Matches are distributed among these distances:
43 4 0.02
44 6 0.03
45 23 0.13
46 34 0.19
47 58 0.33
48 15 0.09
49 3 0.02
50 32 0.18
51 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
Found at i:17581247 original size:91 final size:92
Alignment explanation
Indices: 17581077--17581349 Score: 284
Period size: 91 Copynumber: 2.9 Consensus size: 92
17581067 ATATTTGTGT
* * * *
17581077 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAATTATGAGAGTCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TA-CATGATAGTCAGTGTAAGACCATGTC
*
17581142 TGGGACATGACATCGGCATTGAGAC-AAGA
63 TGGGACATGGCATCGGCATTGAGACGAAGA
* *
17581171 GCTAGT-TCAGACATGACTGGGACATGCATCGGCTACATGATATGTCAGTGTAAGACCATGTCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATA-GTCAGTGTAAGACCATGTCTG
** * *
17581235 GGACATGGCATCGGCACAGATACGTGAGA
65 GGACATGGCATCGGCATTGAGACG-AAGA
* * *
17581264 G-TCAGTGTAAGACCATGTCTGGGACAAGGCATCGACTTAACATGAGAG-CTAGTGTAAGACCAT
1 GCT-AGTGTAAGA-CATGTCTGGGAC-ATGCATCGGC-T-ACATGATAGTC-AGTGTAAGACCAT
*
17581327 GTCTAGGACATGGCATCGGCATT
60 GTCTGGGACATGGCATCGGCATT
17581350 ATACCCTATG
Statistics
Matches: 150, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
90 5 0.03
91 40 0.27
92 2 0.01
93 31 0.21
94 10 0.07
95 11 0.07
96 9 0.06
97 35 0.23
98 7 0.05
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATAGTCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACGAAGA
Found at i:17582352 original size:30 final size:27
Alignment explanation
Indices: 17582308--17582363 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
17582298 CAAGGTTTTT
17582308 AGACACGGGTGTGTCATGGCCATGTGAG
1 AGACACGGGTGTGTCA-GGCCATGTGAG
*
17582336 AGACACGGGCGTGTGTCAGGCCGTGTGA
1 AGACAC-GG-GTGTGTCAGGCCATGTGA
17582364 AAACCTGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 11 0.44
30 8 0.32
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.20
Consensus pattern (27 bp):
AGACACGGGTGTGTCAGGCCATGTGAG
Found at i:17582512 original size:21 final size:20
Alignment explanation
Indices: 17582483--17582521 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
17582473 TCATAATGAA
*
17582483 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCATG-TGCCCTTT
*
17582504 CACATGGGCATGTGCCCT
1 CACACGGGCATGTGCCCT
17582522 GTGGTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (20 bp):
CACACGGGCATGTGCCCTTT
Found at i:17593112 original size:36 final size:34
Alignment explanation
Indices: 17593005--17593115 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 34
17592995 CTCTCTATTT
* *
17593005 TGGTGTGTTTCAATTGGACTAGCTCTTCAGAGCCAT-
1 TGGTGTGTTTTAA-TGGATTAGCTCTT-AGAG-CATC
17593041 TGGTGTGTTTTAGATGGATTAGCTCTTACGAGCATC
1 TGGTGTGTTTTA-ATGGATTAGCTCTTA-GAGCATC
17593077 TGGTGTGTTTTGAATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTT-AATGGATTAGCTCTTA-GAGCATC
17593113 TGG
1 TGG
17593116 AGTTTGTTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
35 4 0.06
36 62 0.91
37 2 0.03
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (34 bp):
TGGTGTGTTTTAATGGATTAGCTCTTAGAGCATC
Found at i:17598481 original size:21 final size:22
Alignment explanation
Indices: 17598443--17598483 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
17598433 AATGCAATCC
*
17598443 AAAAAGAACATAATCAAAGAAG
1 AAAAAGAACATAAACAAAGAAG
*
17598465 AAAAAGAAGA-AAACAAAGA
1 AAAAAGAACATAAACAAAGA
17598484 TAAGGTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.73, C:0.07, G:0.15, T:0.05
Consensus pattern (22 bp):
AAAAAGAACATAAACAAAGAAG
Found at i:17599821 original size:19 final size:19
Alignment explanation
Indices: 17599797--17599835 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17599787 AAATTTTACC
17599797 TTTGACTAGACTTTTATCA
1 TTTGACTAGACTTTTATCA
17599816 TTTGACTAGACTTTTATCA
1 TTTGACTAGACTTTTATCA
17599835 T
1 T
17599836 ATTAATTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TTTGACTAGACTTTTATCA
Found at i:17608236 original size:36 final size:35
Alignment explanation
Indices: 17608189--17608425 Score: 144
Period size: 35 Copynumber: 6.7 Consensus size: 35
17608179 ATATCTTTGG
* *
17608189 TTTATCCGACTAGCGCTGGGCGCAATTCTTTATCGA
1 TTTATTCGACTAGCGCTGGGCGCAA-TCTTTGTCGA
* * * **
17608225 TTTATTTGACTAGTG-TAGGGCACAATGATTGTC-A
1 TTTATTCGACTAGCGCT-GGGCGCAATCTTTGTCGA
* *
17608259 ATTATCCGACTAGCGCTGGGCGCAAATCTTTGTCGA
1 TTTATTCGACTAGCGCTGGGCGC-AATCTTTGTCGA
* * * *
17608295 TCTATTCGACTAGTG-TAGGACACAAT-TATTGTCGA
1 TTTATTCGACTAGCGCT-GGGCGCAATCT-TTGTCGA
* * * * *
17608330 TTTATCCAACTAGCACTGGGCTCAAATCTTTTTCGA
1 TTTATTCGACTAGCGCTGGGCGC-AATCTTTGTCGA
* * * *
17608366 TCTATTCGACTAGTG-TAGGACACAAT-TATTGTCGA
1 TTTATTCGACTAGCGCT-GGGCGCAATCT-TTGTCGA
* *
17608401 TTTATTCGGCTAGCACTGGGCGCAA
1 TTTATTCGACTAGCGCTGGGCGCAA
17608426 AACATTGTCG
Statistics
Matches: 147, Mismatches: 42, Indels: 25
0.69 0.20 0.12
Matches are distributed among these distances:
34 19 0.13
35 67 0.46
36 60 0.41
37 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (35 bp):
TTTATTCGACTAGCGCTGGGCGCAATCTTTGTCGA
Found at i:17608450 original size:71 final size:71
Alignment explanation
Indices: 17608189--17608435 Score: 343
Period size: 71 Copynumber: 3.5 Consensus size: 71
17608179 ATATCTTTGG
* * * * * * *
17608189 TTTATCCGACTAGCGCTGGGCGCAATTCTTTATCGATTTATTTGACTAGTGTAGGGCACAATGAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
17608254 TGTC-A
66 TGTCGA
* *
17608259 ATTATCCGACTAGCGCTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
17608324 TGTCGA
66 TGTCGA
* * *
17608330 TTTATCCAACTAGCACTGGGCTCAAATCTTTTTCGATCTATTCGACTAGTGTAGGACACAATTAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
17608395 TGTCGA
66 TGTCGA
* * * *
17608401 TTTATTCGGCTAGCACTGGGCGCAAAACATTGTCG
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCG
17608436 GCTTATCCGA
Statistics
Matches: 157, Mismatches: 19, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
70 62 0.39
71 95 0.61
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
TGTCGA
Found at i:17610345 original size:12 final size:12
Alignment explanation
Indices: 17610328--17610353 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
17610318 CCCCACATGC
17610328 CCGTGTGCTAGG
1 CCGTGTGCTAGG
17610340 CCGTGTGCTAGG
1 CCGTGTGCTAGG
17610352 CC
1 CC
17610354 TTGTAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:17610941 original size:19 final size:19
Alignment explanation
Indices: 17610917--17610954 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
17610907 ACTTAGATGG
*
17610917 ATAGTGTGAGCTGGTTGCT
1 ATAGTGTGAGCTAGTTGCT
17610936 ATAGTGTGAGCTAGTTGCT
1 ATAGTGTGAGCTAGTTGCT
17610955 TGATCCTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.11, G:0.34, T:0.37
Consensus pattern (19 bp):
ATAGTGTGAGCTAGTTGCT
Found at i:17611176 original size:40 final size:40
Alignment explanation
Indices: 17611091--17611251 Score: 182
Period size: 40 Copynumber: 4.0 Consensus size: 40
17611081 TATATGGTTT
* * *
17611091 AGGGTTACCAAAGTAAAAATA-GGGCACATATGTGCATTCA
1 AGGG-TACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
* * *
17611131 GGGGTACCAAAGTACAAATAGGGGAACTTATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
** *
17611171 AGGGTACTGAAGTACAAACAGGGGCACCTATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
* * *
17611211 AAGGTACCGAAGTACAAACAGGGGCA-TGCATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACT-TATGTGCATTCA
17611251 A
1 A
17611252 CAATAATTAT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
39 15 0.14
40 90 0.86
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.20
Consensus pattern (40 bp):
AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
Found at i:17613987 original size:40 final size:40
Alignment explanation
Indices: 17613943--17614055 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
17613933 TAGCATTAAG
* * *
17613943 AAAGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACC
1 AAAGTACAAATAGGGGCACGTATGTGCATTCAAGGGTACC
*
17613983 AAAGTACAAATAGGGGTACGTATGTGCATTCAAGGGTACC
1 AAAGTACAAATAGGGGCACGTATGTGCATTCAAGGGTACC
* * *
17614023 GAAGTATAAATAGGGGCACATATGTGCATTCAA
1 AAAGTACAAATAGGGGCACGTATGTGCATTCAA
17614056 CAATTATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.22
Consensus pattern (40 bp):
AAAGTACAAATAGGGGCACGTATGTGCATTCAAGGGTACC
Found at i:17620415 original size:48 final size:48
Alignment explanation
Indices: 17620290--17620621 Score: 402
Period size: 48 Copynumber: 6.9 Consensus size: 48
17620280 GGTAAGATGT
* * * *
17620290 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATC-AGTG-
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCAC--ATATCGAG-GC
* * * *
17620339 CGACGCCATGTTCCAAACATGGTATTACACTAGCACACCTATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * * *
17620387 CGATGCCATG-TCCTAGACACGGTCTTACACTAGCCCACCTATCGAGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATATCGAGGC
* * *
17620435 TGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAG--CTCACATATCGAGGC
17620485 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * *
17620533 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
*
17620581 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
17620622 ACTCTAGTAT
Statistics
Matches: 251, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
47 8 0.03
48 170 0.68
49 31 0.12
50 39 0.16
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
Found at i:17620557 original size:146 final size:144
Alignment explanation
Indices: 17620290--17620621 Score: 452
Period size: 146 Copynumber: 2.3 Consensus size: 144
17620280 GGTAAGATGT
*
17620290 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATCAGTGCGACGCCATGTTCCAA
1 CGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCGACGCCATGTTCCAA
* *
17620355 ACATGGTATTACACTAGCACACCTATCGAGGCCGATGCCATGTCCTAGACACGGTCTTACACTAG
65 ACATGGTATTACACTAGCACACATATCGAGGCCGATGCCATGTCCTAAACACGGTCTTACACTAG
* *
17620420 CCCACCTATCGAGGC
130 CCCACATATCAAGGC
* * *
17620435 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCGAG-GCCGATGCCATGTTCC
1 CGATGCCATGTCC-AGACATGGTCTTACACTGGCTCTCATATATC-AGTG-CGACGCCATGTTCC
* * *
17620499 AAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTTCC-AAACATGGTCTTACAC
63 AAACATGGTATTACACTAGCACACATATCGAGGCCGATGCCATG-TCCTAAACACGGTCTTACAC
* * *
17620563 TAGCTCTCATATCAATGC
127 TAGCCCACATATCAAGGC
* *
17620581 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATG-TCCAGACATGGTCTTACACTGGCTCTCATA
17620622 ACTCTAGTAT
Statistics
Matches: 164, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
144 2 0.01
145 40 0.24
146 116 0.71
147 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCGACGCCATGTTCCAAA
CATGGTATTACACTAGCACACATATCGAGGCCGATGCCATGTCCTAAACACGGTCTTACACTAGC
CCACATATCAAGGC
Found at i:17626306 original size:40 final size:40
Alignment explanation
Indices: 17626236--17626453 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
17626226 AAACCAAGTA
* *
17626236 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
17626275 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
17626315 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
17626355 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
17626395 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
17626435 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
17626454 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.08
40 154 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:17634297 original size:40 final size:40
Alignment explanation
Indices: 17634253--17634521 Score: 448
Period size: 40 Copynumber: 6.7 Consensus size: 40
17634243 GCTACTAGCT
17634253 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
17634293 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
17634333 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
17634373 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
17634413 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
17634453 CAAATGCCTTCGGGACTTAGCCCAGAAATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
17634493 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
17634522 CAATCCGAAT
Statistics
Matches: 213, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:17637592 original size:39 final size:39
Alignment explanation
Indices: 17637537--17637633 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 39
17637527 CCAAACCATG
* *
17637537 TGCCTTCGGGATTTAGCCGG-ATATAG-CTACTCGCACAAA
1 TGCCTTCGGGACTTAGCCGGAAT-TAGTC-ACTAGCACAAA
*
17637576 TGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAG-CCGGAATTAGTCACTAGCACAAA
17637616 TGCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCC
17637634 CGGTTATCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
39 16 0.31
40 32 0.63
41 3 0.06
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCGGAATTAGTCACTAGCACAAA
Found at i:17641971 original size:47 final size:48
Alignment explanation
Indices: 17641905--17642007 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
17641895 TATCAGTATT
* *
17641905 GATGCCATGTTCCAAACATGGTCTTACACT-AGCTACCTATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
* * *
17641952 GATGCCATGTCCCAGACATGGTCTTACACTAACCTTCCTATCGAGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
17642000 GATGCCAT
1 GATGCCAT
17642008 ATCCTTACAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 28 0.56
48 22 0.44
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
Found at i:17642089 original size:48 final size:48
Alignment explanation
Indices: 17642023--17642174 Score: 207
Period size: 48 Copynumber: 3.2 Consensus size: 48
17642013 TACACTAGCT
*
17642023 CTCATATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
1 CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* * * *
17642071 CTCACATATCAAGGCTGATGCCATGTTTCAAACATAGTTTTACACT-A
1 CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* * * *
17642118 GCTCTCATATCAATCCCGATGCCATATTCCAAACATGGTCTTACACTGA
1 -CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
17642167 CTCACATA
1 CTCACATA
17642175 ACCCTAGTAT
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 86 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (48 bp):
CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
Found at i:17642091 original size:87 final size:88
Alignment explanation
Indices: 17641950--17642174 Score: 219
Period size: 96 Copynumber: 2.5 Consensus size: 88
17641940 CCTATCGAGG
* * * *
17641950 CCGATGCCATGTCCCAGACATGGTCTTACACTAACCTTC-C-TATCGAGGTCGATGCCA-TATC-
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGA-C-TCACATATCAAGGTCGATGCCAGTATCA
*
17642011 C-TTACACTAGCTCTCATATATCAATG
64 CTTTACACTAGCTCTC--ATATCAATC
* *
17642037 CTGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGG-CTGATGCCATGTTTCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGGTC-GATGCCA-GTATC-
17642101 AACATAGTTTTACACTAGCTCTCATATCAATC
63 -AC-----TTTACACTAGCTCTCATATCAATC
*
17642133 CCGATGCCATATTCCAAACATGGTCTTACACTGACTCACATA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATA
17642175 ACCCTAGTAT
Statistics
Matches: 115, Mismatches: 9, Indels: 19
0.80 0.06 0.13
Matches are distributed among these distances:
85 2 0.02
86 3 0.03
87 44 0.38
89 3 0.03
92 1 0.01
96 48 0.42
98 14 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (88 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGGTCGATGCCAGTATCACT
TTACACTAGCTCTCATATCAATC
Found at i:17651775 original size:32 final size:33
Alignment explanation
Indices: 17651729--17651803 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 33
17651719 ATGTGCATTC
* *
17651729 AACAATAATTATCTATAAACATATTAACTAAA-
1 AACAATAATAATCTATAAAAATATTAACTAAAG
17651761 AACAATAATAATCTATAAAAATATTAACTAAAG
1 AACAATAATAATCTATAAAAATATTAACTAAAG
17651794 AACAATAATA
1 AACAATAATA
17651804 TAAAATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 30 0.75
33 10 0.25
ACGTcount: A:0.60, C:0.11, G:0.01, T:0.28
Consensus pattern (33 bp):
AACAATAATAATCTATAAAAATATTAACTAAAG
Found at i:17653734 original size:28 final size:28
Alignment explanation
Indices: 17653688--17653762 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 28
17653678 CAAACCATAT
** * * *
17653688 ATTTTGATTTTTAAATTTTAATTTTAGT
1 ATTTTGATTTTCCATTTTTAATTTGAGA
*
17653716 TTTTTGATTTTCCATTTTTAATTTGAGA
1 ATTTTGATTTTCCATTTTTAATTTGAGA
* *
17653744 AGTTTGATTTTGCATTTTT
1 ATTTTGATTTTCCATTTTT
17653763 TTAATATTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.63
Consensus pattern (28 bp):
ATTTTGATTTTCCATTTTTAATTTGAGA
Found at i:17659099 original size:34 final size:34
Alignment explanation
Indices: 17659061--17659139 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
17659051 CACATTATAA
17659061 TGCATCATTTTAAACATCATATT-TAGTTTCATAT
1 TGCATCATTTTAAACATCAT-TTCTAGTTTCATAT
* * * * *
17659095 TGCATCATTGTAGACATCATTTCTTGTTTCCTTT
1 TGCATCATTTTAAACATCATTTCTAGTTTCATAT
17659129 TGCATCATTTT
1 TGCATCATTTT
17659140 GTTTTTTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 2 0.05
34 36 0.95
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.49
Consensus pattern (34 bp):
TGCATCATTTTAAACATCATTTCTAGTTTCATAT
Found at i:17663105 original size:68 final size:67
Alignment explanation
Indices: 17663033--17663182 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
17663023 CATCATGTGT
* * * *
17663033 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
17663095 ATGTAG
62 ATGTAG
** * *
17663101 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
17663166 AG
66 AG
17663168 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
17663183 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:17663138 original size:64 final size:64
Alignment explanation
Indices: 17663057--17663240 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
17663047 AGACATTATG
* *
17663057 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
17663121 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
17663186 AA
63 AA
* * * *
17663188 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
17663241 GAACTATATG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:17668113 original size:28 final size:28
Alignment explanation
Indices: 17668069--17668135 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
17668059 TCTCACTGTA
* *
17668069 CGAAATATTCAGAATGACACTTAGTGTG
1 CGAAATATTGAGAATGACACTTAATGTG
*
17668097 CGAGATATTGAGAATGACACTTAATGTG
1 CGAAATATTGAGAATGACACTTAATGTG
*
17668125 TGAAATATTGA
1 CGAAATATTGA
17668136 ATGATTCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.30
Consensus pattern (28 bp):
CGAAATATTGAGAATGACACTTAATGTG
Found at i:17673246 original size:33 final size:32
Alignment explanation
Indices: 17673174--17673253 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 32
17673164 CTGTATGGAG
* * *
17673174 ATGGGCTAAGACCCACACTGTTACTGATACTGT
1 ATGGGCTAAG-GCCACACTGATACTGAGACTGT
* *
17673207 ATTGGGCTAAGGCCACACTGATATTGCGACTGAT
1 A-TGGGCTAAGGCCACACTGATACTGAGACTG-T
*
17673241 ATGGGCTTAGGCC
1 ATGGGCTAAGGCC
17673254 CAGTTGTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 28 0.72
34 11 0.28
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (32 bp):
ATGGGCTAAGGCCACACTGATACTGAGACTGT
Found at i:17676398 original size:17 final size:17
Alignment explanation
Indices: 17676356--17676400 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
17676346 ACGGGCAGAG
17676356 ACACGGGCGTGTGT-CT
1 ACACGGGCGTGTGTCCT
*
17676372 -CA--GCCGTGTGTCCT
1 ACACGGGCGTGTGTCCT
17676386 ACACGGGCGTGTGTC
1 ACACGGGCGTGTGTC
17676401 TTGGCCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
13 8 0.35
14 2 0.09
15 4 0.17
17 9 0.39
ACGTcount: A:0.11, C:0.29, G:0.36, T:0.24
Consensus pattern (17 bp):
ACACGGGCGTGTGTCCT
Found at i:17693057 original size:21 final size:21
Alignment explanation
Indices: 17693018--17693057 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
17693008 AACTATTCAG
*
17693018 AAGAAGAAGAAAAATAATAGT
1 AAGAAGAAGAAAAAGAATAGT
* *
17693039 AAGAAGAATAACAAGAATA
1 AAGAAGAAGAAAAAGAATA
17693058 AACTCAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.17, T:0.12
Consensus pattern (21 bp):
AAGAAGAAGAAAAAGAATAGT
Found at i:17693148 original size:13 final size:13
Alignment explanation
Indices: 17693130--17693157 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17693120 ATAACAACCA
17693130 AACTAAATAAAAT
1 AACTAAATAAAAT
17693143 AACTAAATAAAAT
1 AACTAAATAAAAT
17693156 AA
1 AA
17693158 TAGTAAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (13 bp):
AACTAAATAAAAT
Found at i:17693239 original size:5 final size:5
Alignment explanation
Indices: 17693206--17693275 Score: 77
Period size: 5 Copynumber: 13.4 Consensus size: 5
17693196 ATGAAAAAAT
* * * *
17693206 AATAA AAGTAA AATAA AAGAA ATACAA AATAA AATAA AATAA ATTAG AATAAA
1 AATAA AA-TAA AATAA AATAA A-ATAA AATAA AATAA AATAA AATAA AAT-AA
17693259 AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AA
17693276 ATGAAAAATG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 42 0.76
6 13 0.24
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:17693243 original size:26 final size:24
Alignment explanation
Indices: 17693206--17693275 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 24
17693196 ATGAAAAAAT
17693206 AATAAAAGTAAAATAAAAGAAATACAA
1 AATAAAA-TAAAATAAAAG-AATA-AA
17693233 AATAAAATAAAATAAATTAGAATAAA
1 AATAAAATAAAATAAA--AGAATAAA
17693259 AATAAAATAAAATAAAA
1 AATAAAATAAAATAAAA
17693276 ATGAAAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.02
26 27 0.66
27 11 0.27
28 2 0.05
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (24 bp):
AATAAAATAAAATAAAAGAATAAA
Found at i:17693249 original size:21 final size:21
Alignment explanation
Indices: 17693201--17693284 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
17693191 TTAATATGAA
*
17693201 AAAAT-AATAAAAGT-AAAAT
1 AAAATAAATAAAAATAAAAAT
*
17693220 AAAAGAAATACAAAAT-AAAAT
1 AAAATAAATA-AAAATAAAAAT
* *
17693241 AAAATAAATTAGAATAAAAAT
1 AAAATAAATAAAAATAAAAAT
17693262 AAAATAAAATAAAAATGAAAAAT
1 AAAAT-AAATAAAAAT-AAAAAT
17693285 GGTAAATGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.08
20 8 0.15
21 27 0.51
22 8 0.15
23 6 0.11
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAAAT
Found at i:17693262 original size:16 final size:16
Alignment explanation
Indices: 17693206--17693282 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
17693196 ATGAAAAAAT
*
17693206 AATAAAAGTAAAATAA
1 AATAAAAATAAAATAA
* * *
17693222 AAGAAATACAAAATAA
1 AATAAAAATAAAATAA
* *
17693238 AAT-AAAATAAATTAG
1 AATAAAAATAAAATAA
17693253 AATAAAAATAAAATAA
1 AATAAAAATAAAATAA
17693269 AATAAAAATGAAAA
1 AATAAAAAT-AAAA
17693283 ATGGTAAATG
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
15 11 0.23
16 33 0.69
17 4 0.08
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.18
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:17693291 original size:7 final size:7
Alignment explanation
Indices: 17693281--17693307 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
17693271 TAAAAATGAA
17693281 AAATGGT
1 AAATGGT
17693288 AAATGGT
1 AAATGGT
17693295 AAATGGT
1 AAATGGT
17693302 AAATGG
1 AAATGG
17693308 GGAGGAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (7 bp):
AAATGGT
Found at i:17695563 original size:46 final size:46
Alignment explanation
Indices: 17695496--17695670 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
17695486 TGTAACCCGC
*
17695496 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
**
17695542 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTATTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTCGCAT
* * * * * *
17695592 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
17695635 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
17695671 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 62 0.58
47 26 0.24
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:17695632 original size:93 final size:93
Alignment explanation
Indices: 17695504--17695675 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
17695494 GCCCATAAGT
* * * *
17695504 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCAGACTCAACTCAA
17695569 CGAGCTCGGATGCCTATTTACATCTCAC
66 CGAGCTCGGATGCCTATTTACATCTCAC
* *
17695597 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCACCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCAGACTCAACTCAA
*
17695662 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
17695676 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTATTTACATCTCAC
Found at i:17698105 original size:15 final size:14
Alignment explanation
Indices: 17698057--17698141 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 14
17698047 CAAAGATAAT
* *
17698057 AAGAAAACCGAATA
1 AAGAAATCCAAATA
17698071 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* *
17698086 GAGAAACTCGAAATA
1 AAGAAA-TCCAAATA
17698101 AAGAAATCCAGAATA
1 AAGAAATCCA-AATA
* *
17698116 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
17698131 AAGAAACCCAA
1 AAGAAATCCAA
17698142 GATACGATAC
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
14 12 0.21
15 41 0.72
16 4 0.07
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:17698145 original size:15 final size:15
Alignment explanation
Indices: 17698068--17698145 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
17698058 AGAAAACCGA
17698068 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
17698083 ATAGAGAAACTCGAA-
1 ATAAAGAAA-TCCAAG
17698098 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
17698112 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
17698128 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
17698143 ATA
1 ATA
17698146 CGATACTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
13 1 0.02
14 2 0.04
15 42 0.84
16 5 0.10
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:17701921 original size:39 final size:40
Alignment explanation
Indices: 17701804--17701987 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
17701794 GCTACTCGTT
*
17701804 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
17701844 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
17701884 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
17701923 -AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
17701963 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17701988 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
37 2 0.02
38 9 0.07
39 36 0.29
40 66 0.54
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:17701971 original size:78 final size:81
Alignment explanation
Indices: 17701804--17701987 Score: 209
Period size: 78 Copynumber: 2.3 Consensus size: 81
17701794 GCTACTCGTT
* *
17701804 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
17701868 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * **
17701885 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA-AAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
17701946 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
17701963 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
17701988 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 3 0.03
78 37 0.42
79 33 0.38
80 12 0.14
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:17709162 original size:39 final size:40
Alignment explanation
Indices: 17709045--17709229 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
17709035 GCTACTCGTT
*
17709045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
17709085 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
17709125 CCAATGCCTCCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
17709164 AAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
17709205 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17709230 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:17710878 original size:93 final size:93
Alignment explanation
Indices: 17710769--17710940 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
17710759 GCCCATAAGT
* * * *
17710769 GAACTCGAATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCAGACTCAACTCAA
17710834 CAAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCGGATGCCTAGTTACATCTCAC
* * *
17710862 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCAGACTCAACTCAA
* *
17710927 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
17710941 CAAATATCCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:17710936 original size:46 final size:46
Alignment explanation
Indices: 17710761--17710936 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
17710751 TGTAACCTGC
* * * * *
17710761 CCATAAGTGAACTCGAATTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
17710807 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
17710857 -C-TCAC-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
17710900 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGA
17710937 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 61 0.57
47 26 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:17718408 original size:22 final size:23
Alignment explanation
Indices: 17718386--17718427 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
17718376 GTTTCCAAGA
*
17718386 AAAT-AATAAGA-AAATAGATAG
1 AAATAAATAAGATAAAGAGATAG
17718407 AAATAAATAAGATAAAGAGAT
1 AAATAAATAAGATAAAGAGAT
17718428 TAAAAACTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 7 0.39
23 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (23 bp):
AAATAAATAAGATAAAGAGATAG
Found at i:17718510 original size:51 final size:52
Alignment explanation
Indices: 17718407--17718521 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 52
17718397 AAATAGATAG
*
17718407 AAATAAATAAGATAAAGAGATTAAAAACTAGAAAAAAAATTGAAACAACAAA
1 AAATAAATAAAATAAAGAGATTAAAAACTAGAAAAAAAATTGAAACAACAAA
* *
17718459 ACA-AAATAAAATAAA-AGA-TATAAATCTAGAAAAAAAATAT-AAA-AATCCAAA
1 AAATAAATAAAATAAAGAGATTA-AAAACTAGAAAAAAAAT-TGAAACAA--CAAA
17718510 AAATAAATAAAA
1 AAATAAATAAAA
17718522 ATGAAAACAG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
49 4 0.07
50 22 0.41
51 18 0.33
52 10 0.19
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (52 bp):
AAATAAATAAAATAAAGAGATTAAAAACTAGAAAAAAAATTGAAACAACAAA
Found at i:17722903 original size:43 final size:43
Alignment explanation
Indices: 17722856--17722972 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
17722846 TCGATACCAC
* *
17722856 TGTCCCAGACAGGGTCTTACACGA-AATCA-TATAACAATGCCAA
1 TGTCCCAGACATGGTCTTACAC-ATAATCACAAT-ACAATGCCAA
* *
17722899 TGTCCCAGACATGGTTTTACACATAATCACAATACAATTCCAA
1 TGTCCCAGACATGGTCTTACACATAATCACAATACAATGCCAA
* **
17722942 TATCCCAGACATGGTCTTACATGTAATCACA
1 TGTCCCAGACATGGTCTTACACATAATCACA
17722973 TCTCGGTAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 61 0.95
44 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACATAATCACAATACAATGCCAA
Found at i:17732081 original size:24 final size:21
Alignment explanation
Indices: 17732049--17732096 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 21
17732039 TAACTTCAAA
*
17732049 TTTTTATGTTCATTTTCATCTTG
1 TTTTTATGTTAATTTT-AT-TTG
17732072 TTTTTAATGTTAATTTTATTTG
1 TTTTT-ATGTTAATTTTATTTG
17732094 TTT
1 TTT
17732097 ATGTTTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 7 0.30
24 10 0.43
ACGTcount: A:0.17, C:0.06, G:0.08, T:0.69
Consensus pattern (21 bp):
TTTTTATGTTAATTTTATTTG
Found at i:17739596 original size:29 final size:29
Alignment explanation
Indices: 17739540--17739596 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
17739530 ATATTTGTAA
* * *
17739540 TATTTTTATTTAATTAGTAAATAGATATT
1 TATTATTATTAAATTAATAAATAGATATT
* *
17739569 TATTATTATTAAATTAATATATATATAT
1 TATTATTATTAAATTAATAAATAGATAT
17739597 GAGATAAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (29 bp):
TATTATTATTAAATTAATAAATAGATATT
Found at i:17739915 original size:16 final size:17
Alignment explanation
Indices: 17739894--17739928 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17739884 AGACGAAAAA
*
17739894 GAAAG-AAAGGAAAAGG
1 GAAAGAAAAGAAAAAGG
17739910 GAAAGAAAAGAAAAAGG
1 GAAAGAAAAGAAAAAGG
17739927 GA
1 GA
17739929 GAATTGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAGAAAAAGG
Found at i:17740830 original size:41 final size:37
Alignment explanation
Indices: 17740785--17740880 Score: 93
Period size: 37 Copynumber: 2.5 Consensus size: 37
17740775 CCTCGAGTCA
**
17740785 ATGAGACACTGGGTGTCACTGTTTTACTTCGGATAGATTCG
1 ATGAGACACTGGGTGTCAC---TTTACTTCGGATAG-GCCG
** ** *
17740826 ATGAGGTACTGGGTACCACTTTACTTCGGCTAGGCCG
1 ATGAGACACTGGGTGTCACTTTACTTCGGATAGGCCG
17740863 ATGAGACACTGGGTGTCA
1 ATGAGACACTGGGTGTCA
17740881 AATATTGCTT
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
37 16 0.36
38 13 0.30
41 15 0.34
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (37 bp):
ATGAGACACTGGGTGTCACTTTACTTCGGATAGGCCG
Found at i:17743474 original size:30 final size:30
Alignment explanation
Indices: 17743416--17743474 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
17743406 TTTACGAGCC
* *
17743416 TAGGGGCCAAAGTGTAAATAAGTGAAAGTT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGTT
* **
17743446 TAGGGGTCAAAATGTAAATTTGTAAAAGT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGT
17743475 ATGAATTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGTAAATAAGTAAAAGTT
Found at i:17748040 original size:30 final size:30
Alignment explanation
Indices: 17748006--17748066 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
17747996 TCATTAACTC
17748006 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
17748036 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
17748066 A
1 A
17748067 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:17750958 original size:24 final size:24
Alignment explanation
Indices: 17750885--17751019 Score: 103
Period size: 24 Copynumber: 5.5 Consensus size: 24
17750875 TTAAAGGTCT
* *
17750885 GCACACATAGTGCTCTTACTCAT-TC
1 GCACACATAGTGC-CATA-TAATCTC
* * *
17750910 GCACACATAGTGCCGTGT-TTCCTC
1 GCACACATAGTGCCATATAAT-CTC
*
17750934 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCCATATAATCTC
* * * *
17750958 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTC
* * *
17750983 GCACACATAGTGCCACATAACCTT
1 GCACACATAGTGCCATATAATCTC
17751007 GCACACATAGTGC
1 GCACACATAGTGC
17751020 TGAAATTTCT
Statistics
Matches: 89, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 54 0.61
25 33 0.37
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTC
Found at i:17750987 original size:49 final size:47
Alignment explanation
Indices: 17750884--17751019 Score: 141
Period size: 49 Copynumber: 2.8 Consensus size: 47
17750874 TTTAAAGGTC
* *
17750884 TGCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGTGTTTCCT
1 TGCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGTGTTT-CT
*
17750933 CGCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-T
1 TGCACACATAGTGCTATATAATCTCGCACACATAGTGCC--GT-GTTTCT
* * * *
17750982 TGCACACATAGTGCCACATAACCTTGCACACATAGTGC
1 TGCACACATAGTGCTATATAATCTCGCACACATAGTGC
17751020 TGAAATTTCT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
48 16 0.21
49 49 0.65
50 6 0.08
51 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (47 bp):
TGCACACATAGTGCTATATAATCTCGCACACATAGTGCCGTGTTTCT
Found at i:17754255 original size:57 final size:58
Alignment explanation
Indices: 17754154--17754267 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
17754144 GAAAATGGAT
* * *
17754154 AAATGGGAAACATTTGGAAATGAAATGTGGTTTTCTCTAAAATGAAAACCAAAATAAA
1 AAATGGGAAACAATTGGAAATGAAATGTGGTTTTCCCTAAAATGAAAACAAAAATAAA
* * *
17754212 AAATTGGAAACAATTGGAAATG-AATGTGGTTTTCCCTGAAATGAAAATAAAAATAA
1 AAATGGGAAACAATTGGAAATGAAATGTGGTTTTCCCTAAAATGAAAACAAAAATAA
17754268 CCTAAAAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 30 0.60
58 20 0.40
ACGTcount: A:0.48, C:0.08, G:0.18, T:0.26
Consensus pattern (58 bp):
AAATGGGAAACAATTGGAAATGAAATGTGGTTTTCCCTAAAATGAAAACAAAAATAAA
Found at i:17764702 original size:13 final size:13
Alignment explanation
Indices: 17764684--17764708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17764674 AGAAAGGTGA
17764684 TTAGGTTTCAATC
1 TTAGGTTTCAATC
17764697 TTAGGTTTCAAT
1 TTAGGTTTCAAT
17764709 TTAAGAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
TTAGGTTTCAATC
Found at i:17772560 original size:42 final size:43
Alignment explanation
Indices: 17772456--17772593 Score: 111
Period size: 42 Copynumber: 3.2 Consensus size: 43
17772446 TATGTGTTAT
* * * * * *
17772456 CATGTAAGATCATGTCTAGGACATTGGTATCGACT-TATGATTTA
1 CATGTAAGATCCTGTCTGGGACACTAGCATCGA-TATTTGA-TTA
* * * *
17772500 CATATAAGA-CCACGTCTGGGACACTAGTATCG-TATTTGATTT
1 CATGTAAGATCC-TGTCTGGGACACTAGCATCGATATTTGATTA
* * *
17772542 CGTGTAAGATCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGATCCTGTCTGGGACACTAGCATCGATATTTGATTA
17772585 CATGTAAGA
1 CATGTAAGA
17772594 CCACGTCTAG
Statistics
Matches: 74, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
42 26 0.35
43 24 0.32
44 24 0.32
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (43 bp):
CATGTAAGATCCTGTCTGGGACACTAGCATCGATATTTGATTA
Found at i:17772579 original size:43 final size:42
Alignment explanation
Indices: 17772456--17772593 Score: 109
Period size: 44 Copynumber: 3.2 Consensus size: 42
17772446 TATGTGTTAT
* * * * *
17772456 CATGTAAGATCATGTCTAGGACATTGGTATCG-ACTTATGATTTA
1 CATGTAAGATCCTGTCTGGGACACTAGCATCGTA-TT-TGA-TTA
* * * *
17772500 CATATAAGA-CCACGTCTGGGACACTAGTATCGTATTTGATTT
1 CATGTAAGATCC-TGTCTGGGACACTAGCATCGTATTTGATTA
* * *
17772542 CGTGTAAGATCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGATCCTGTCTGGGACACTAGCATCG-TATTTGATTA
17772585 CATGTAAGA
1 CATGTAAGA
17772594 CCACGTCTAG
Statistics
Matches: 75, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
42 25 0.33
43 23 0.31
44 26 0.35
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
CATGTAAGATCCTGTCTGGGACACTAGCATCGTATTTGATTA
Found at i:17772607 original size:43 final size:43
Alignment explanation
Indices: 17772456--17772614 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
17772446 TATGTGTTAT
* * * *
17772456 CATGTAAGATCATGTCTAGGACATTGGTATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTAGGACATTGGCATCGA-TATTTGA-TTA
* * * * * *
17772500 CATATAAGACCACGTCTGGGACACTAGTATCG-TATTTGATTT
1 CATGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTA
* * * *
17772542 CGTGTAAGATCC-TGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGA-CCACGTCTAGGACATTGGCATCGATATTTGATTA
17772585 CATGTAAGACCACGTCTAGGACATTGGCAT
1 CATGTAAGACCACGTCTAGGACATTGGCAT
17772615 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
42 28 0.30
43 38 0.41
44 26 0.28
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTA
Found at i:17772659 original size:27 final size:27
Alignment explanation
Indices: 17772621--17772675 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
17772611 GCATTGTACG
17772621 AGCTTTCCAAGTTATTCGTATATCCTT
1 AGCTTTCCAAGTTATTCGTATATCCTT
17772648 AGCTTTCCAAGTTATTCGTATATCCTT
1 AGCTTTCCAAGTTATTCGTATATCCTT
17772675 A
1 A
17772676 TGATTCCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.44
Consensus pattern (27 bp):
AGCTTTCCAAGTTATTCGTATATCCTT
Found at i:17777264 original size:33 final size:33
Alignment explanation
Indices: 17777227--17777468 Score: 209
Period size: 33 Copynumber: 7.4 Consensus size: 33
17777217 AAATGGTACA
**
17777227 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* ** * *
17777260 ATTTGAAAAGGAAAGGTACACAATATGTGTA-C
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* ** * * *
17777292 ACTTGAAAAGGTTATGTACACTTTGTGTGTA-C
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * ** *
17777324 ACTTGGAAAGGTTAGGTATACTTTGTGTACACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
17777357 ATATGAAAAGGAACGGTATACTTTGTGTATAAC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
17777390 ATATGAAAAGGAAAGGTATACTTTGTTTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
17777423 ATATGAAAAGGAAAGGTATATTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
17777456 ACTTGGAAAGGAA
1 ATTTGAAAAGGAA
17777469 TGTACACCTC
Statistics
Matches: 171, Mismatches: 37, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
32 52 0.30
33 119 0.70
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.33
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:17777311 original size:32 final size:32
Alignment explanation
Indices: 17777275--17777337 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
17777265 AAAAGGAAAG
17777275 GTACACAATATGTGTACACTTGAAAAGGTTAT
1 GTACACAATATGTGTACACTTGAAAAGGTTAT
** * *
17777307 GTACACTTTGTGTGTACACTTGGAAAGGTTA
1 GTACACAATATGTGTACACTTGAAAAGGTTA
17777338 GGTATACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (32 bp):
GTACACAATATGTGTACACTTGAAAAGGTTAT
Found at i:17791865 original size:12 final size:12
Alignment explanation
Indices: 17791845--17791875 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17791835 TTGAGGGTTG
17791845 TGAGGAGAGATT
1 TGAGGAGAGATT
*
17791857 TGGGGAGAGATT
1 TGAGGAGAGATT
17791869 TGAGGAG
1 TGAGGAG
17791876 GGGATCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (12 bp):
TGAGGAGAGATT
Found at i:17793645 original size:34 final size:34
Alignment explanation
Indices: 17793601--17793701 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
17793591 TGCATTTCTG
17793601 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
1 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
*
17793635 TTACTGTTACTGTAATGGGCTAAGGCCCACACTA
1 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
*
17793669 TTACTATTACTGTAATGGGCTTAGGCCCACACT
1 TTACTATTACTGTAATGGGCTAAGGCCCACACT
17793702 GATACTGGAC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (34 bp):
TTACTATTACTGTAATGGGCTAAGGCCCACACTA
Found at i:17800765 original size:17 final size:18
Alignment explanation
Indices: 17800739--17800774 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
17800729 TGGGTCAGGC
17800739 CGTGTAGG-CCACACGGG
1 CGTGTAGGCCCACACGGG
*
17800756 CGTGTTGGCCCACACGGG
1 CGTGTAGGCCCACACGGG
17800774 C
1 C
17800775 AGACCACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.33, G:0.39, T:0.14
Consensus pattern (18 bp):
CGTGTAGGCCCACACGGG
Found at i:17802827 original size:29 final size:29
Alignment explanation
Indices: 17802795--17802852 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
17802785 TATACTATGG
17802795 TTACTAACTTATCCATCAAACACTCATGT
1 TTACTAACTTATCCATCAAACACTCATGT
*
17802824 TTACTAACTTATCCATCAAGCACTCATGT
1 TTACTAACTTATCCATCAAACACTCATGT
17802853 CCAACCATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (29 bp):
TTACTAACTTATCCATCAAACACTCATGT
Found at i:17804815 original size:28 final size:28
Alignment explanation
Indices: 17804779--17804836 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
17804769 CTTGTCATGG
17804779 ATCAACATTTTCTTACATTTCATGTAAT
1 ATCAACATTTTCTTACATTTCATGTAAT
17804807 ATCAACATTTTCTTACATTTCATGTAAT
1 ATCAACATTTTCTTACATTTCATGTAAT
17804835 AT
1 AT
17804837 TCTTCGATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (28 bp):
ATCAACATTTTCTTACATTTCATGTAAT
Found at i:17806139 original size:33 final size:33
Alignment explanation
Indices: 17806102--17806177 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
17806092 TACTTTCTAT
* *
17806102 TTGGTGTGCTGGTTGGATTCGCTCTTATAAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
*
17806135 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
17806168 TTGGTGTGAT
1 TTGGTGTGAT
17806178 AGAGGGATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.16, C:0.11, G:0.33, T:0.41
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
Found at i:17806186 original size:33 final size:33
Alignment explanation
Indices: 17806116--17806191 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
17806106 TGTGCTGGTT
* * **
17806116 GGATTCGCTCTTATAAGCATTGGTGTGATGGTT
1 GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
*
17806149 GGATTAGCTCTTATGAGCATTGGTGTGATAGAG
1 GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
*
17806182 GGATTGGCTC
1 GGATTAGCTC
17806192 GAGTGAGCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.20, C:0.12, G:0.33, T:0.36
Consensus pattern (33 bp):
GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
Found at i:17806199 original size:33 final size:33
Alignment explanation
Indices: 17806116--17806201 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 33
17806106 TGTGCTGGTT
* * * * **
17806116 GGATTCGCTCTTATAAGCATTGGTGTGATGGTT
1 GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
*
17806149 GGATTAGCTCTTATGAGCATTGGTGTGATAGAG
1 GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
*
17806182 GGATTGGCTC-GAGTGAGCAT
1 GGATTAGCTCTGA-TGAGCAT
17806202 CTTGTGTGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 1 0.02
33 44 0.98
ACGTcount: A:0.21, C:0.12, G:0.34, T:0.34
Consensus pattern (33 bp):
GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
Found at i:17806874 original size:23 final size:23
Alignment explanation
Indices: 17806840--17806884 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
17806830 GGTTGAATTA
17806840 ATGTTATGTTTTGGTATAAATGT
1 ATGTTATGTTTTGGTATAAATGT
*
17806863 ATGTATAT-TTTTGGTATCAATG
1 ATGT-TATGTTTTGGTATAAATG
17806885 AGGGTACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (23 bp):
ATGTTATGTTTTGGTATAAATGT
Found at i:17808494 original size:29 final size:27
Alignment explanation
Indices: 17808476--17808544 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
17808466 ATATTAAGTC
*
17808476 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCCATATAATCAACT
*
17808503 CGCACACTTAGTGCCATATAATCAAACT
1 CGCACACTCAGTGCCATATAATC-AACT
*
17808531 CGCACACTTAGTGC
1 CGCACACTCAGTGC
17808545 TGTACAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (27 bp):
CGCACACTCAGTGCCATATAATCAACT
Found at i:17808568 original size:29 final size:28
Alignment explanation
Indices: 17808475--17808575 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
17808465 TATATTAAGT
* * *
17808475 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCCATACAATCAAAC
* *
17808502 TCGCACACTTAGTGCCATATAATCAAAC
1 CCGCACACTTAGTGCCATACAATCAAAC
* ** *
17808530 TCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCCATACAA-TCAAAC
17808559 CCGCACACTTAGTGCCA
1 CCGCACACTTAGTGCCA
17808576 ATCTCATGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.25
Consensus pattern (28 bp):
CCGCACACTTAGTGCCATACAATCAAAC
Found at i:17819747 original size:46 final size:46
Alignment explanation
Indices: 17819680--17819851 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
17819670 AACCCGCCCC
* *
17819680 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* *
17819726 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
17819774 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
17819819 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
17819852 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 1 0.01
46 60 0.57
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:17819792 original size:93 final size:93
Alignment explanation
Indices: 17819685--17819855 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
17819675 GCCCCTAAGT
* * *
17819685 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
17819750 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
17819778 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
17819843 CGAGTTCGGATGC
66 CGAGTTCGGATGC
17819856 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:17823279 original size:45 final size:45
Alignment explanation
Indices: 17823229--17823338 Score: 143
Period size: 45 Copynumber: 2.5 Consensus size: 45
17823219 TCCTATTTAC
* *
17823229 CATGATGCCATAACGTCTTTTAGCCATGGTCTTACTCAT-TTATAT
1 CATGATGCCATAACGTCTTTTAGCCATGGCCTTACTCATCCT-TAT
* * * *
17823274 CATGATGCCATAGCATCTTTTAGCTATGGCCTTACTTATCCTTAT
1 CATGATGCCATAACGTCTTTTAGCCATGGCCTTACTCATCCTTAT
17823319 CATGATGCCATAACGT-TTTT
1 CATGATGCCATAACGTCTTTT
17823339 CAATTATGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 4 0.07
45 51 0.91
46 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.40
Consensus pattern (45 bp):
CATGATGCCATAACGTCTTTTAGCCATGGCCTTACTCATCCTTAT
Found at i:17824698 original size:14 final size:14
Alignment explanation
Indices: 17824679--17824706 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
17824669 CGCTTGAGTC
17824679 GGGCAAATAGCGTT
1 GGGCAAATAGCGTT
17824693 GGGCAAATAGCGTT
1 GGGCAAATAGCGTT
17824707 ATATTTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.21
Consensus pattern (14 bp):
GGGCAAATAGCGTT
Found at i:17824808 original size:31 final size:29
Alignment explanation
Indices: 17824773--17824839 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
17824763 TTCTTCCATC
* *
17824773 AATTTTTATACTCTTTGAATTTTTGAAATGT
1 AATTTCTATAC-CTTT-AATTTTAGAAATGT
* *
17824804 AATTTCTCTACCTTTAATTTTAGAAATTT
1 AATTTCTATACCTTTAATTTTAGAAATGT
*
17824833 AGTTTCT
1 AATTTCT
17824840 CAACTTATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 18 0.58
30 4 0.13
31 9 0.29
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.54
Consensus pattern (29 bp):
AATTTCTATACCTTTAATTTTAGAAATGT
Found at i:17826562 original size:27 final size:26
Alignment explanation
Indices: 17826515--17826569 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
17826505 AATAAATTAA
17826515 AAATAAATTAAAAAAATATGTATACTT
1 AAATAAATTAAAAAAATATGTA-ACTT
* *
17826542 AAATAACATTAAGATAA-ATGTAACTT
1 AAATAA-ATTAAAAAAATATGTAACTT
17826568 AA
1 AA
17826570 CAAGCAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 11 0.44
28 8 0.32
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.31
Consensus pattern (26 bp):
AAATAAATTAAAAAAATATGTAACTT
Found at i:17828427 original size:90 final size:91
Alignment explanation
Indices: 17828258--17828430 Score: 260
Period size: 90 Copynumber: 1.9 Consensus size: 91
17828248 AGTTGTGGAT
* *
17828258 GAACCACCAAAAGTTGCAGGTTAGTACACTGCTAAATGGTTGTAAATACACAACATAATTGCAGA
1 GAACCACCAAAAGTTACAGGTTAATACACTGCTAAATGGTTGTAAATACACAACATAATTGCAGA
*
17828323 TAAAAGTTGCCAGATAATGGGTATGC
66 TAAAAGCTGCCAGATAATGGGTATGC
* * * *
17828349 GAACCACC-AATGTTACAGGTTAATACGCTG-TCAAATGGTTGTGAATACACAACATATTTGCAG
1 GAACCACCAAAAGTTACAGGTTAATACACTGCT-AAATGGTTGTAAATACACAACATAATTGCAG
17828412 ATAAAAGCTGCCAGATAAT
65 ATAAAAGCTGCCAGATAAT
17828431 ATGTGAATGA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
89 1 0.01
90 65 0.88
91 8 0.11
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (91 bp):
GAACCACCAAAAGTTACAGGTTAATACACTGCTAAATGGTTGTAAATACACAACATAATTGCAGA
TAAAAGCTGCCAGATAATGGGTATGC
Found at i:17828443 original size:90 final size:89
Alignment explanation
Indices: 17828251--17828445 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 89
17828241 CACACCAAGT
* * *
17828251 TGTGGATGAACCACCAAAAGTTGCAGGTTAGTACACTGCTAAATGGTTGTAAATACACAACATAA
1 TGTGAATGAACCACCAAAAGTTACAGGTTAATACACTGCTAAATGGTTGTAAATACACAACATAA
*
17828316 TTGCAGATAAAAGTTGCCAGATAA
66 TTGCAGATAAAAGCTGCCAGATAA
* * * * *
17828340 TGGGTATGCGAACCACC-AATGTTACAGGTTAATACGCTG-TCAAATGGTTGTGAATACACAACA
1 TGTGAAT--GAACCACCAAAAGTTACAGGTTAATACACTGCT-AAATGGTTGTAAATACACAACA
*
17828403 TATTTGCAGATAAAAGCTGCCAGATAATA
63 TAATTGCAGATAAAAGCTGCCAGAT-A-A
17828432 TGTGAATGAACCAC
1 TGTGAATGAACCAC
17828446 AGGATTTGCA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
89 6 0.07
90 69 0.77
91 9 0.10
92 6 0.07
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (89 bp):
TGTGAATGAACCACCAAAAGTTACAGGTTAATACACTGCTAAATGGTTGTAAATACACAACATAA
TTGCAGATAAAAGCTGCCAGATAA
Found at i:17828884 original size:21 final size:20
Alignment explanation
Indices: 17828860--17828900 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
17828850 TAATATGAAT
*
17828860 AAATCATAAAATTTTGGGTGA
1 AAATCAT-AAATTTTGAGTGA
*
17828881 AAATCGTAAATTTTGAGTGA
1 AAATCATAAATTTTGAGTGA
17828901 CAGAGGACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (20 bp):
AAATCATAAATTTTGAGTGA
Found at i:17831716 original size:20 final size:20
Alignment explanation
Indices: 17831691--17831728 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
17831681 CCCATTTAAA
*
17831691 TAAAAAATTTAATTTAACCC
1 TAAAAAAATTAATTTAACCC
17831711 TAAAAAAATTAATTTAAC
1 TAAAAAAATTAATTTAAC
17831729 TGTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAAAAATTAATTTAACCC
Found at i:17834130 original size:24 final size:24
Alignment explanation
Indices: 17834091--17834146 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 24
17834081 TAAATGTTAA
*
17834091 TTTTTAAATATTTTAA-AGAAT-AT
1 TTTTTTAATATTTTAATA-AATAAT
17834114 TTTTTTAATATTCTTAATAAATAAT
1 TTTTTTAATATT-TTAATAAATAAT
17834139 TTTTTTAA
1 TTTTTTAA
17834147 GATTAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 11 0.38
24 7 0.24
25 11 0.38
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTTTAATATTTTAATAAATAAT
Found at i:17835117 original size:6 final size:6
Alignment explanation
Indices: 17835106--17835134 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
17835096 CAAAACTAAA
17835106 GTGTTG GTGTTG GTGTTG GTGTTG GTGTT
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTT
17835135 TTTGATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (6 bp):
GTGTTG
Found at i:17835405 original size:21 final size:20
Alignment explanation
Indices: 17835377--17835419 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
17835367 ATATTTCATG
*
17835377 TAAAATTATATTAAATT-ATT
1 TAAAATTAT-CTAAATTAATT
17835397 TAAATATTATCTAAATTAATT
1 TAAA-ATTATCTAAATTAATT
17835418 TA
1 TA
17835420 TTGTTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TAAAATTATCTAAATTAATT
Found at i:17840184 original size:156 final size:156
Alignment explanation
Indices: 17839900--17840211 Score: 615
Period size: 156 Copynumber: 2.0 Consensus size: 156
17839890 GTAATTGAAA
17839900 AGATCTTCATCTGTATTTGTCAACTTATCATATCAAGGTTTATGAAAGAAGGCTTTAGTTGCATC
1 AGATCTTCATCTGTATTTGTCAACTTATCATATCAAGGTTTATGAAAGAAGGCTTTAGTTGCATC
17839965 GAAAGAAGATGCATTTCTCGTCTACTTTTTCCCCTACCCACAAATAGAAAATGTATCTTAATATT
66 GAAAGAAGATGCATTTCTCGTCTACTTTTTCCCCTACCCACAAATAGAAAATGTATCTTAATATT
17840030 GGAAGTCTAATCTTACATTTATTGGG
131 GGAAGTCTAATCTTACATTTATTGGG
17840056 AGATCTTCATCTGTATTTGTCAACTTATCATATCAAGGTTTATGAAAGAAGGCTTTAGTTGCATC
1 AGATCTTCATCTGTATTTGTCAACTTATCATATCAAGGTTTATGAAAGAAGGCTTTAGTTGCATC
*
17840121 GAAAGAAGATGCATTTCTCGTCTAGTTTTTCCCCTACCCACAAATAGAAAATGTATCTTAATATT
66 GAAAGAAGATGCATTTCTCGTCTACTTTTTCCCCTACCCACAAATAGAAAATGTATCTTAATATT
17840186 GGAAGTCTAATCTTACATTTATTGGG
131 GGAAGTCTAATCTTACATTTATTGGG
17840212 TGTTAAGGCA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 155 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (156 bp):
AGATCTTCATCTGTATTTGTCAACTTATCATATCAAGGTTTATGAAAGAAGGCTTTAGTTGCATC
GAAAGAAGATGCATTTCTCGTCTACTTTTTCCCCTACCCACAAATAGAAAATGTATCTTAATATT
GGAAGTCTAATCTTACATTTATTGGG
Found at i:17840249 original size:38 final size:38
Alignment explanation
Indices: 17840207--17840284 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
17840197 CTTACATTTA
17840207 TTGGGTGTTAAGGCATTATATGAACTAATTGAGCAAAC
1 TTGGGTGTTAAGGCATTATATGAACTAATTGAGCAAAC
17840245 TTGGGTGTTAAGGCATTATATGAACTAATTGAGCAAAC
1 TTGGGTGTTAAGGCATTATATGAACTAATTGAGCAAAC
17840283 TT
1 TT
17840285 TCGATAGTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (38 bp):
TTGGGTGTTAAGGCATTATATGAACTAATTGAGCAAAC
Found at i:17849373 original size:35 final size:35
Alignment explanation
Indices: 17849323--17849407 Score: 102
Period size: 35 Copynumber: 2.4 Consensus size: 35
17849313 AATCGACTCA
* *
17849323 AAAAAGGTTGAGATAGACCATT-T-TATGCCAACCTT
1 AAAAAGGTTGGGATAGA-C-TTGTCTAAGCCAACCTT
* *
17849358 AAAAATGTTGGGATAGACTTGTCTAAGGCAACCTT
1 AAAAAGGTTGGGATAGACTTGTCTAAGCCAACCTT
17849393 AAAAAGGTTGGGATA
1 AAAAAGGTTGGGATA
17849408 AACCTTGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
33 2 0.05
34 2 0.05
35 39 0.91
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACTTGTCTAAGCCAACCTT
Found at i:17856644 original size:20 final size:20
Alignment explanation
Indices: 17856619--17856670 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
17856609 AAGGTGAGGG
17856619 ACACGGGCGTGTCCCCAAGC
1 ACACGGGCGTGTCCCCAAGC
**
17856639 ACACGGGCGTGTCCCTGAGC
1 ACACGGGCGTGTCCCCAAGC
17856659 ACACGGGCGTGT
1 ACACGGGCGTGT
17856671 GAGGCATAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCCAAGC
Found at i:17860636 original size:22 final size:23
Alignment explanation
Indices: 17860606--17860649 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
17860596 AACCTGAAAA
17860606 AAACTAAAAGTTCTACAATATCC
1 AAACTAAAAGTTCTACAATATCC
17860629 AAAC-AAAAGTTCTACAATATC
1 AAACTAAAAGTTCTACAATATC
17860650 TATATATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (23 bp):
AAACTAAAAGTTCTACAATATCC
Found at i:17864831 original size:16 final size:15
Alignment explanation
Indices: 17864807--17864841 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
17864797 TGATATGAAT
17864807 AATATAAAATATTAA
1 AATATAAAATATTAA
*
17864822 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
17864838 AATA
1 AATA
17864842 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:17865086 original size:29 final size:29
Alignment explanation
Indices: 17865047--17865113 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
17865037 TATAATTAAA
17865047 ATATATAAATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* **
17865076 ATATATAAATAATATAGTATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
17865105 ATACATAAA
1 ATATATAAA
17865114 ATAGTATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:17865104 original size:25 final size:25
Alignment explanation
Indices: 17864992--17865209 Score: 114
Period size: 25 Copynumber: 8.9 Consensus size: 25
17864982 TACGTGATAA
* *
17864992 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
17865017 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
17865041 -ATTAAA-ATATATAAATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
17865064 CATGTAAAATATATATATAAATAATATAG
1 TAT-T--AA-AGATATATACATAATATAG
*
17865093 TATTAAAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* *
17865118 TA-TAATATATATATACGTAATATAG
1 TATTAA-AGATATATACATAATATAG
* * *
17865143 AATT-TAGA-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
17865165 T-TAAAAGAATATATATATAATATAA
1 TATTAAAG-ATATATACATAATATAG
*
17865190 TATT-AAGAAATATA-ATAATA
1 TATTAAAGATATATACATAATA
17865210 ACAAAAAAAA
Statistics
Matches: 150, Mismatches: 29, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
21 1 0.01
22 15 0.10
23 24 0.16
24 25 0.17
25 60 0.40
26 4 0.03
27 2 0.01
28 2 0.01
29 17 0.11
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Done.