Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 61 of 332
Found at i:18122746 original size:82 final size:82
Alignment explanation
Indices: 18122609--18122775 Score: 282
Period size: 82 Copynumber: 2.0 Consensus size: 82
18122599 AAGAAGAGAC
* * *
18122609 AGATGGGGAAATCACATCAGTTCTCTTCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
1 AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
18122674 TC-AGTGGGTTTTCTAAT
66 TCGA-TGGGTTTTCTAAT
*
18122691 AGATGGGGAAATCACATCAATCCTCATCTAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
1 AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
18122756 TCGATGGGTTTTCTAAT
66 TCGATGGGTTTTCTAAT
18122773 AGA
1 AGA
18122776 AACAAGAACC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 79 0.99
83 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (82 bp):
AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
TCGATGGGTTTTCTAAT
Found at i:18124238 original size:11 final size:11
Alignment explanation
Indices: 18124207--18124240 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
18124197 TTTATGGTTT
18124207 AAAATTTCAGTG
1 AAAATTTC-GTG
18124219 AATAATTTCGTG
1 AA-AATTTCGTG
18124231 AAAATTTCGT
1 AAAATTTCGT
18124241 TCCAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 7 0.33
13 6 0.29
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (11 bp):
AAAATTTCGTG
Found at i:18125199 original size:47 final size:47
Alignment explanation
Indices: 18125130--18125223 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
18125120 CATAAGGTAA
*
18125130 GTTCATATGATTTTTAATAATGCAATGTGTAATTTAATGTTATTGCC
1 GTTCATATGATTTTTAATAATGCAAAGTGTAATTTAATGTTATTGCC
18125177 GTTCATATGATTTTTAATAATGCAAAGTGTAATTTAATGTTATTGCC
1 GTTCATATGATTTTTAATAATGCAAAGTGTAATTTAATGTTATTGCC
18125224 TTGATATTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.46
Consensus pattern (47 bp):
GTTCATATGATTTTTAATAATGCAAAGTGTAATTTAATGTTATTGCC
Found at i:18127949 original size:36 final size:36
Alignment explanation
Indices: 18127906--18127979 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
18127896 GCCTGAAATG
*
18127906 AATGACATGATTTTGACGATGTTGCTATGATGATGA
1 AATGACATCATTTTGACGATGTTGCTATGATGATGA
18127942 AATGACATCATTTTGACGATGTTGCTATGATGATGA
1 AATGACATCATTTTGACGATGTTGCTATGATGATGA
18127978 AA
1 AA
18127980 GTTGTGTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (36 bp):
AATGACATCATTTTGACGATGTTGCTATGATGATGA
Found at i:18131141 original size:30 final size:30
Alignment explanation
Indices: 18131093--18131149 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
18131083 TTTATGAGTC
18131093 TAGGGGCAAAAATTTAATTTTGACAAAGTT
1 TAGGGGCAAAAATTTAATTTTGACAAAGTT
*
18131123 TAGGGG-AAAAATTGTAATTTTGCCAAA
1 TAGGGGCAAAAATT-TAATTTTGACAAA
18131150 ATATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATTTAATTTTGACAAAGTT
Found at i:18136615 original size:46 final size:47
Alignment explanation
Indices: 18136557--18136781 Score: 181
Period size: 47 Copynumber: 4.8 Consensus size: 47
18136547 ATTCGTGTGT
* *
18136557 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-GATGA
* * ** **
18136603 GAGCCAGTGTAAGACCAAGTCTGGGACATGGCATTGGCATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACAGATGA
* *
18136651 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-AGATGA
* ** * * **
18136697 TAATCAGTGTGAGACCATGTCTGGGACATGGCATCGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGA
*** * *
18136743 TGAGCCAGTGTAAGATTGTGTTTAGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
18136782 ACCTTATCCT
Statistics
Matches: 137, Mismatches: 35, Indels: 13
0.74 0.19 0.07
Matches are distributed among these distances:
45 1 0.01
46 33 0.24
47 72 0.53
48 29 0.21
49 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGA
Found at i:18136720 original size:94 final size:94
Alignment explanation
Indices: 18136559--18136730 Score: 281
Period size: 94 Copynumber: 1.8 Consensus size: 94
18136549 TCGTGTGTGA
** *
18136559 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCAAGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAGTC
18136624 TGGGACATGGCATTGGCATTGAGACAAGG
66 TGGGACATGGCATTGGCATTGAGACAAGG
* * * *
18136653 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAATCAGTGTGAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAGTC
18136718 TGGGACATGGCAT
66 TGGGACATGGCAT
18136731 CGACTTGAGA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAGTC
TGGGACATGGCATTGGCATTGAGACAAGG
Found at i:18136771 original size:94 final size:94
Alignment explanation
Indices: 18136557--18136781 Score: 254
Period size: 94 Copynumber: 2.4 Consensus size: 94
18136547 ATTCGTGTGT
* * ** *
18136557 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCAAG
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAG
* *
18136622 TCTGGGACATGGCATTGGCATTGAGACAA
66 TCTGGGACATGGCATCGACATTGAGACAA
* * * * * * *
18136651 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAATCAGTGTGAGACCATG
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAG
* *
18136716 TCTGGGACATGGCATCGAC-TTGAGATAT
66 TCTGGGACATGGCATCGACATTGAGACAA
** *
18136744 GAGCCAGTGTAAGATTGTGTTTAGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
18136782 ACCTTATCCT
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
93 19 0.17
94 84 0.76
95 8 0.07
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (94 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAAG
TCTGGGACATGGCATCGACATTGAGACAA
Found at i:18137765 original size:22 final size:21
Alignment explanation
Indices: 18137740--18137780 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
18137730 TTGGAATGCT
*
18137740 CACATGGGCGTGTTGCCCCTCC
1 CACACGGGCGTG-TGCCCCTCC
*
18137762 CACACGGGTGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
18137781 GTGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTCC
Found at i:18140432 original size:48 final size:46
Alignment explanation
Indices: 18140352--18140714 Score: 269
Period size: 46 Copynumber: 7.8 Consensus size: 46
18140342 TGGGATATAT
*
18140352 TGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATACGAG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAT-C-AG
** * * * *
18140402 TGCTAATGCGTGTCCCAGACATGTCTTACACTAG--CACA-ACTC-T
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA-TCAG
* * * * *
18140445 TAGCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCACTGTCAG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TATCAG
* * * *
18140493 -GCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCAG
*
18140538 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-A-
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-TCAG
* * * * * * *
18140585 TAGCTGATACATGTCCCAGACATGTCTTACACTAGCCCTCGTCT-GG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCAG
*
18140631 ATGCCGATGCTATGTCCCAGACATGCTCTTACAATGGCTCTCATA--ATG
1 -TGCCGATGC-ATGTCCCAGACATG-TCTTACACTGGCTCTCATATCA-G
* *
18140679 TGGCCGAAGCATGTCCCAGACACGTCTTACACTGGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGC
18140715 GCACAAATCA
Statistics
Matches: 247, Mismatches: 48, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 28 0.11
45 7 0.03
46 77 0.31
47 60 0.24
48 55 0.22
49 13 0.05
50 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCAG
Found at i:18140591 original size:94 final size:94
Alignment explanation
Indices: 18140352--18140711 Score: 369
Period size: 94 Copynumber: 3.9 Consensus size: 94
18140342 TGGGATATAT
* * * * *
18140352 TGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATA-TACGAGTGCTAATGCGTGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-TA--GCTGATGCATGTC
*
18140416 CCAGACATGTCTTACACTAGCA--CAACTCT-
63 CCAGACATGTCTTACACTAGCACTCATCTCTG
* * * *
18140445 TAGCCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCACT-GTCA-GGCTGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TAGT-ATAGCTGATGCATGTC
*
18140506 CCAGACATGTCTTACACTGGCACTCATCTCTG
63 CCAGACATGTCTTACACTAGCACTCATCTCTG
*
18140538 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATAGCTGATACATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATAGCTGATGCATGTCCCA
* * *
18140603 GACATGTCTTACACTAGCCCTCGTCT-GG
66 GACATGTCTTACACTAGCACTCATCTCTG
* * * * * * * * *
18140631 ATGCCGATGCTATGTCCCAGACATGCTCTTACAATGGCTCTCATAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATAGCTGATGCATGTCCC
*
18140696 AGACACGTCTTACACT
65 AGACATGTCTTACACT
18140712 GGCGCACAAA
Statistics
Matches: 225, Mismatches: 30, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
90 32 0.14
92 30 0.13
93 28 0.12
94 135 0.60
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATAGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTCTG
Found at i:18148098 original size:27 final size:27
Alignment explanation
Indices: 18148068--18148208 Score: 146
Period size: 27 Copynumber: 5.2 Consensus size: 27
18148058 GTGACGAAGT
*
18148068 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
* * *
18148095 CACCAGA-ATAGATATATGTAGCAAAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
18148122 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
18148149 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
18148176 CACCAGAT-CAGATAATTGTGACATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
18148203 CACCAG
1 CACCAG
18148209 GACGCTTCCT
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 83 0.86
28 4 0.04
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:18148150 original size:54 final size:54
Alignment explanation
Indices: 18148068--18148208 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 54
18148058 GTGACGAAGT
* * *
18148068 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTAGCAAAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTAGCAAAGC
* * *
18148122 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTAGCAAAGC
*
18148176 CACCAGATCAGATAATTGTGACATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
18148209 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 4 0.05
54 74 0.95
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTAGCAAAGC
Found at i:18149852 original size:26 final size:26
Alignment explanation
Indices: 18149822--18149929 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
18149812 TGAAATGCCC
18149822 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
18149848 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
18149874 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
18149900 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
18149926 ATCA
1 ATCA
18149930 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:18151096 original size:41 final size:41
Alignment explanation
Indices: 18151043--18151538 Score: 216
Period size: 41 Copynumber: 12.2 Consensus size: 41
18151033 AATTATACAT
* *
18151043 TAGCGGC-GTTTTGAATAAAACACCACTAAAAACTGAGCAA
1 TAGCGGCATTTTTGAATAAAACGCCACTAAAAACTGAGCAA
* * * *
18151083 TAGCGACATTTTTG-GTCAAAACGCCACTAAGAACCGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
18151124 TAGCGGCA-TTTTGAATAAAACGCCACTAAAAACTGAGCAA
1 TAGCGGCATTTTTGAATAAAACGCCACTAAAAACTGAGCAA
* * * * *
18151164 TAGCGGCGTTTTTG-GTCCAAACGCCACTAAGAA-TCGAGCAT
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACT-GAGCAA
** * * ** *
18151205 TAGCATCGTTTCTG-ATCCTAA-GCCACTAAAAACCGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
* ** * * *
18151245 TAGTGGTGTTTCT-AATCCAAACGCCACTAAAAACCGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
** ** * * * * ** *
18151286 TAGTAGTGTTTCTG-GTCCAAATGCCACTAAAAACCAAGCAT
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
* * *
18151327 TAGCGGCATTTCTG-ATCATAACGCCATTAAAAACCT-AGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAA-CTGAGCAA
* ** * * * *
18151368 TAGTGGTGTTTCT-AGTCCAAACGCCACTAAAAATTGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
** * * *
18151409 TAGCGGTGTTTCT-AGTCCAAACGCCACTAAAAACCT-AGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAA-CTGAGCAA
* * * * *
18151450 TAGCGGCGTTTCTG-GTCCAAACGCCACTAAAAACCGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACTGAGCAA
* * *
18151491 TAGCGGCATTTTTG-GTCCAAACACCACTAAAAA-TCGAGCAA
1 TAGCGGCATTTTTGAAT-AAAACGCCACTAAAAACT-GAGCAA
*
18151532 TAACGGC
1 TAGCGGC
18151539 GTTTCTACTC
Statistics
Matches: 378, Mismatches: 61, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
40 75 0.20
41 301 0.80
42 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.22
Consensus pattern (41 bp):
TAGCGGCATTTTTGAATAAAACGCCACTAAAAACTGAGCAA
Found at i:18151539 original size:82 final size:82
Alignment explanation
Indices: 18151060--18151544 Score: 510
Period size: 82 Copynumber: 5.9 Consensus size: 82
18151050 GTTTTGAATA
* * * * * *
18151060 AAACACCACTAAAAACTGAGCAATAGCGACATTTTTGGTCAAAACGCCACTAAGAACCGAGCAAT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
* * *
18151125 AGCGGCATTT-TGAAT-A
66 AGCGGCGTTTCTG-GTCC
* * * * * *
18151141 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACTAAGAATCGAGCATT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
** *
18151206 AGCATCGTTTCTGATCC
66 AGCGGCGTTTCTGGTCC
* * ** **
18151223 TAA-GCCACTAAAAACCGAGCAATAGTGGTGTTTCTAATCCAAACGCCACTAAAAACCGAGCAAT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
** *
18151287 AGTAGTGTTTCTGGTCC
66 AGCGGCGTTTCTGGTCC
* * * * * *
18151304 AAATGCCACTAAAAACCAAGCATTAGCGGCATTTCTGAT-CATAACGCCATTAAAAACCTAGCAA
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCA-AACGCCACTAAAAACCGAGCAA
* * *
18151368 TAGTGGTGTTTCTAGTCC
65 TAGCGGCGTTTCTGGTCC
** ** * *
18151386 AAACGCCACTAAAAATTGAGCAATAGCGGTGTTTCTAGTCCAAACGCCACTAAAAACCTAGCAAT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
18151451 AGCGGCGTTTCTGGTCC
66 AGCGGCGTTTCTGGTCC
* * *
18151468 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTTTGGTCCAAACACCACTAAAAATCGAGCAAT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
*
18151533 AACGGCGTTTCT
66 AGCGGCGTTTCT
18151545 ACTCAAAACG
Statistics
Matches: 341, Mismatches: 58, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
81 137 0.40
82 202 0.59
83 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.22
Consensus pattern (82 bp):
AAACGCCACTAAAAACCGAGCAATAGCGGCATTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
AGCGGCGTTTCTGGTCC
Found at i:18151545 original size:123 final size:123
Alignment explanation
Indices: 18151060--18151556 Score: 511
Period size: 123 Copynumber: 4.1 Consensus size: 123
18151050 GTTTTGAATA
* * * * * *
18151060 AAACACCACTAAAAA-CTGAGCAATAGCGACATTTTTGGTCAAAACGCCACTAAGAACCGAGCAA
1 AAACGCCACTAAAAACCT-AGCAATAGCGGCATTTCTGATCCAAACGCCACTAAAAACCGAGCAA
* * *
18151124 TAGCGGCATTT-TGAAT-AAAACGCCACTAAAAA-CTGAGCAATAGCGGCGTTTTTGGTCC
65 TAGCGGCATTTCT-AATCCAAACGCCACTAAAAATC-GAGCAATAGCGGCGTTTCTAGTCC
* * * * ** * *
18151182 AAACGCCACTAAGAATCGAGCATTAGCATCGTTTCTGATCCTAA-GCCACTAAAAACCGAGCAAT
1 AAACGCCACTAAAAACCTAGCAATAGCGGCATTTCTGATCCAAACGCCACTAAAAACCGAGCAAT
* ** * ** * *
18151246 AGTGGTGTTTCTAATCCAAACGCCACTAAAAACCGAGCAATAGTAGTGTTTCTGGTCC
66 AGCGGCATTTCTAATCCAAACGCCACTAAAAATCGAGCAATAGCGGCGTTTCTAGTCC
* * * * *
18151304 AAATGCCACTAAAAACCAAGCATTAGCGGCATTTCTGAT-CATAACGCCATTAAAAACCTAGCAA
1 AAACGCCACTAAAAACCTAGCAATAGCGGCATTTCTGATCCA-AACGCCACTAAAAACCGAGCAA
* ** * * *
18151368 TAGTGGTGTTTCTAGTCCAAACGCCACTAAAAATTGAGCAATAGCGGTGTTTCTAGTCC
65 TAGCGGCATTTCTAATCCAAACGCCACTAAAAATCGAGCAATAGCGGCGTTTCTAGTCC
* *
18151427 AAACGCCACTAAAAACCTAGCAATAGCGGCGTTTCTGGTCCAAACGCCACTAAAAACCGAGCAAT
1 AAACGCCACTAAAAACCTAGCAATAGCGGCATTTCTGATCCAAACGCCACTAAAAACCGAGCAAT
* ** * * * *
18151492 AGCGGCATTTTTGGTCCAAACACCACTAAAAATCGAGCAATAACGGCGTTTCTACTCA
66 AGCGGCATTTCTAATCCAAACGCCACTAAAAATCGAGCAATAGCGGCGTTTCTAGTCC
18151550 AAACGCC
1 AAACGCC
18151557 GTAAAAAGTT
Statistics
Matches: 314, Mismatches: 54, Indels: 13
0.82 0.14 0.03
Matches are distributed among these distances:
121 30 0.10
122 101 0.32
123 181 0.58
124 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (123 bp):
AAACGCCACTAAAAACCTAGCAATAGCGGCATTTCTGATCCAAACGCCACTAAAAACCGAGCAAT
AGCGGCATTTCTAATCCAAACGCCACTAAAAATCGAGCAATAGCGGCGTTTCTAGTCC
Found at i:18152476 original size:21 final size:21
Alignment explanation
Indices: 18152424--18152477 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
18152414 TTTAAGTTAT
18152424 GGTTTAAGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTATTTTG
* **
18152445 GGCTTGGGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTATTTTG
18152466 GGTTTAAGGTTT
1 GGTTTAAGGTTT
18152478 AGGGTATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.11, C:0.02, G:0.33, T:0.54
Consensus pattern (21 bp):
GGTTTAAGGTTTGTTATTTTG
Found at i:18152897 original size:21 final size:21
Alignment explanation
Indices: 18152853--18152897 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
18152843 AATTAATTTT
*
18152853 ATTTTATTTAAAAGTTTAATA
1 ATTTTATTTAAAAGTTTAAAA
18152874 ATTTTA-TTAAAAGTTTATAAA
1 ATTTTATTTAAAAGTTTA-AAA
18152895 ATT
1 ATT
18152898 ATACAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTTATTTAAAAGTTTAAAA
Found at i:18152943 original size:32 final size:32
Alignment explanation
Indices: 18152842--18152943 Score: 99
Period size: 32 Copynumber: 3.3 Consensus size: 32
18152832 AAAATCATAC
18152842 AAATTAATTTTATTTTATTTAAAAGTTTAAT-
1 AAATTAATTTTATTTTATTTAAAAGTTTAATA
* * ** *
18152873 AATTTTATTAAAAGTTTA--TAAAA--TT-ATA
1 AAATTAATT-TTATTTTATTTAAAAGTTTAATA
18152901 CAAATTAATTTTATTTTATTTAAAAGTTTAATA
1 -AAATTAATTTTATTTTATTTAAAAGTTTAATA
18152934 AAATTAATTT
1 AAATTAATTT
18152944 ACTTTAGGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
27 2 0.04
28 7 0.13
29 7 0.13
30 10 0.19
31 7 0.13
32 17 0.32
33 3 0.06
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (32 bp):
AAATTAATTTTATTTTATTTAAAAGTTTAATA
Found at i:18153923 original size:9 final size:9
Alignment explanation
Indices: 18153911--18153948 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
18153901 CATTTGAAAA
18153911 TTAATGTTT
1 TTAATGTTT
*
18153920 TTAATG-AT
1 TTAATGTTT
18153928 TTAAT-TTT
1 TTAATGTTT
18153936 TTAATGTTT
1 TTAATGTTT
18153945 TTAA
1 TTAA
18153949 CGATTTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 12 0.48
9 13 0.52
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (9 bp):
TTAATGTTT
Found at i:18154556 original size:11 final size:11
Alignment explanation
Indices: 18154540--18154565 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18154530 CTTTGCCAAT
18154540 TCTTCTTATTG
1 TCTTCTTATTG
18154551 TCTTCTTATTG
1 TCTTCTTATTG
18154562 TCTT
1 TCTT
18154566 GGATTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.19, G:0.08, T:0.65
Consensus pattern (11 bp):
TCTTCTTATTG
Found at i:18157381 original size:103 final size:103
Alignment explanation
Indices: 18157264--18157667 Score: 664
Period size: 103 Copynumber: 3.9 Consensus size: 103
18157254 TTGAATATGT
*
18157264 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
1 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
*
18157329 ACCTAATTAAATTAAATTGCATTTAAAGTTTTTTTAAA
66 ACCTAATTAAATTAAATTGTATTTAAAGTTTTTTTAAA
18157367 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
1 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
*
18157432 ATCTAATTAAATTAAATTGTATTTAAAGTTTTTTTAAA
66 ACCTAATTAAATTAAATTGTATTTAAAGTTTTTTTAAA
18157470 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
1 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
18157535 ACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
66 ACCTAATTAAATTAAATTGTATTTAAAG-TTT-TTTTAAA
* * * *
18157575 TATTTTATTTTATTTTATTTTAATTTAATCACAAAAATATTTTATTTACTTTTATTTTATTGTTA
1 TATTTTATTTTATTTTATTTTAA--TCA-CA-AAAAATATTTTGTCTACTTTTATTTTATTTTTA
* * *
18157640 AATAACTTAATTAAATTAAATTTTATTT
62 AATTACCTAATTAAATTAAATTGTATTT
18157668 TTAAATATTG
Statistics
Matches: 284, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
103 192 0.68
104 3 0.01
105 30 0.11
107 2 0.01
108 2 0.01
109 55 0.19
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (103 bp):
TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
ACCTAATTAAATTAAATTGTATTTAAAGTTTTTTTAAA
Found at i:18157968 original size:9 final size:9
Alignment explanation
Indices: 18157943--18158182 Score: 106
Period size: 9 Copynumber: 26.0 Consensus size: 9
18157933 ATATCATATC
18157943 TTACATAAT
1 TTACATAAT
18157952 TTACATAAT
1 TTACATAAT
*
18157961 TTACATAAC
1 TTACATAAT
18157970 TTACATAA-
1 TTACATAAT
18157978 -TACATAAAT
1 TTACAT-AAT
18157987 ATGTATCAT-AT
1 -T-TA-CATAAT
*
18157998 CGTACATAAT
1 -TTACATAAT
*
18158008 TTACATAAG
1 TTACATAAT
* * * *
18158017 ATAAACAAC
1 TTACATAAT
18158026 TTACATAA-
1 TTACATAAT
18158034 -TACATAAAT
1 TTACAT-AAT
18158043 ATATATCAT-AT
1 -T-TA-CATAAT
18158054 CTTACATAAT
1 -TTACATAAT
*
18158064 TTACATAAG
1 TTACATAAT
* * *
18158073 ATAAACAACT
1 TTACATAA-T
18158083 TT-CATAAT
1 TTACATAAT
*
18158091 TTACATAAC
1 TTACATAAT
*
18158100 TTACATGA-
1 TTACATAAT
18158108 -TACATAAAT
1 TTACAT-AAT
18158117 ATATATCAT-AT
1 -T-TA-CATAAT
18158128 CTTACATAAT
1 -TTACATAAT
18158138 TTACATAAT
1 TTACATAAT
* *
18158147 TCGA-ATAAC
1 T-TACATAAT
18158156 TTACATAAT
1 TTACATAAT
*
18158165 TTACATAAC
1 TTACATAAT
18158174 TTACATAAT
1 TTACATAAT
18158183 ACATAAATAT
Statistics
Matches: 175, Mismatches: 31, Indels: 50
0.68 0.12 0.20
Matches are distributed among these distances:
7 15 0.09
8 9 0.05
9 114 0.65
10 14 0.08
11 8 0.05
12 6 0.03
13 9 0.05
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.37
Consensus pattern (9 bp):
TTACATAAT
Found at i:18158009 original size:56 final size:56
Alignment explanation
Indices: 18157923--18158090 Score: 273
Period size: 56 Copynumber: 3.0 Consensus size: 56
18157913 AATCTCATCA
** * *
18157923 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
* *
18157979 ACATAAATATGTATCATATCGTACATAATTTACATAAGATAAACAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
*
18158035 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTTCATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
18158091 TTACATAACT
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 103 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (56 bp):
ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
Found at i:18158089 original size:74 final size:74
Alignment explanation
Indices: 18158023--18158202 Score: 299
Period size: 74 Copynumber: 2.4 Consensus size: 74
18158013 TAAGATAAAC
*
18158023 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAGAT-AAACAACTTTCA
1 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA-ATCAAACAACTTACA
18158087 TAATTTACAT
65 TAATTTACAT
* * * *
18158097 AACTTACATGATACATAAATATATATCATATCTTACATAATTTACATAATTCGAATAACTTACAT
1 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAATCAAACAACTTACAT
18158162 AATTTACAT
66 AATTTACAT
18158171 AACTTACATAATACATAAATATATATCATATC
1 AACTTACATAATACATAAATATATATCATATC
18158203 ATAACTTACA
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
73 1 0.01
74 98 0.99
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (74 bp):
AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAATCAAACAACTTACAT
AATTTACAT
Found at i:18158181 original size:27 final size:27
Alignment explanation
Indices: 18158123--18158215 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
18158113 AAATATATAT
*
18158123 CATATCTTACATAATTTACATAA-TT-
1 CATAACTTACATAATTTACATAACTTA
18158148 CGAATAACTTACATAATTTACATAACTTA
1 C--ATAACTTACATAATTTACATAACTTA
* * * *
18158177 CATAA--TACATAA-ATATATATCATA
1 CATAACTTACATAATTTACATAACTTA
18158201 TCATAACTTACATAA
1 -CATAACTTACATAA
18158216 CTTAATTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
24 8 0.14
25 13 0.23
27 32 0.57
28 2 0.04
29 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTACATAATTTACATAACTTA
Found at i:18163864 original size:27 final size:27
Alignment explanation
Indices: 18163833--18164010 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18163823 TAAATTGTAC
18163833 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18163860 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18163886 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18163914 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18163942 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18163969 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18163996 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18164011 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18163947 original size:82 final size:81
Alignment explanation
Indices: 18163834--18163989 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18163824 AAATTGTACA
* *
18163834 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18163898 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18163915 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18163980 TGCGAGTTGA
65 TGCGAATTGA
18163990 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18164001 original size:82 final size:81
Alignment explanation
Indices: 18163830--18164010 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
18163820 GATTAAATTG
* *
18163830 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18163895 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18163911 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18163975 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18163993 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18164011 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18182466 original size:26 final size:27
Alignment explanation
Indices: 18182423--18182514 Score: 91
Period size: 27 Copynumber: 3.4 Consensus size: 27
18182413 TTGAGTCCGC
* *
18182423 CACTCAGTGCTATATAATCAAACTCGCA
1 CACTTAGTGCTACATAATCAAA-TCGCA
*
18182451 CAC-TAGTG-TACGTAATTCAGAATCGCA
1 CACTTAGTGCTACATAA-TCA-AATCGCA
*
18182478 CAACTTAGTGCTACATAGTC-AATCGCA
1 C-ACTTAGTGCTACATAATCAAATCGCA
18182505 CACTTAGTGC
1 CACTTAGTGC
18182515 GCATGGTAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
26 14 0.26
27 21 0.39
28 7 0.13
29 7 0.13
30 5 0.09
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAAATCGCA
Found at i:18182593 original size:29 final size:26
Alignment explanation
Indices: 18182440--18182599 Score: 92
Period size: 29 Copynumber: 5.8 Consensus size: 26
18182430 TGCTATATAA
* * *
18182440 TCAAACTCGCACAC-TAGTGTACGTAAT
1 TCAAA-TCGCACACTTAGTGCACAT-AG
18182467 TCAGAATCGCACAACTTAGTGCTACATAG
1 TCA-AATCGCAC-ACTTAGTGC-ACATAG
* *
18182496 TC-AATCGCACACTTAGTGCGCATGG
1 TCAAATCGCACACTTAGTGCACATAG
* * *
18182521 T-AATTCGCACCGCTTAGTGGAGTCATATG
1 TCAAATCGCA-CACTTAGTGCA--CATA-G
**
18182550 TCATTTCGCACCACTTAGTGCAAACATAG
1 TCAAATCGCA-CACTTAGTGC--ACATAG
18182579 TCAAATCGCAGCACTTAGTGC
1 TCAAATCGCA-CACTTAGTGC
18182600 TGTACAATTT
Statistics
Matches: 105, Mismatches: 16, Indels: 22
0.73 0.11 0.15
Matches are distributed among these distances:
25 11 0.10
26 17 0.16
27 17 0.16
28 7 0.07
29 29 0.28
30 23 0.22
32 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
TCAAATCGCACACTTAGTGCACATAG
Found at i:18195341 original size:23 final size:22
Alignment explanation
Indices: 18195299--18195341 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
18195289 CAACCTATCA
*
18195299 ATTCAATTCCATCAATTCATGC
1 ATTCAATTCCATCAACTCATGC
18195321 ATTCACATTCCAT-ATACTCAT
1 ATTCA-ATTCCATCA-ACTCAT
18195342 CAATAGGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.33, C:0.28, G:0.02, T:0.37
Consensus pattern (22 bp):
ATTCAATTCCATCAACTCATGC
Found at i:18195674 original size:27 final size:27
Alignment explanation
Indices: 18195613--18195787 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
18195603 ATATTGAGTC
* * *
18195613 CGCACACTCAGTGCTATATAATC-AAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18195639 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18195666 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18195694 CGCACA--TAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18195719 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18195746 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18195773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18195788 GTACAATTTA
Statistics
Matches: 126, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.06
26 34 0.27
27 77 0.61
28 8 0.06
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18195704 original size:53 final size:52
Alignment explanation
Indices: 18195613--18195787 Score: 174
Period size: 53 Copynumber: 3.3 Consensus size: 52
18195603 ATATTGAGTC
* * * * *
18195613 CGCACACTCAGTGCTATATAATCAATCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAATCGCACAC-TAGTGCAACATAGTCAAAT
* ** * *
18195666 CGCACACTTAGTGCTACATAGTCAAACTCGCACA-TAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AA-TCGCACACTAGTGCAACATAGTCAAAT
* *
18195719 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCA-ATCGCACAC-TAGTGCAACATAGTCAAAT
18195773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18195788 GTACAATTTA
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
52 9 0.09
53 53 0.53
54 31 0.31
55 7 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (52 bp):
CGCACACTTAGTGCTACATAATCAATCGCACACTAGTGCAACATAGTCAAAT
Found at i:18203601 original size:27 final size:27
Alignment explanation
Indices: 18203571--18203748 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18203561 ATATTGAGTC
* * * *
18203571 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18203598 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18203625 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18203653 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18203680 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18203707 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18203734 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18203749 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18203710 original size:82 final size:81
Alignment explanation
Indices: 18203592--18203747 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18203582 TGCTATATAA
* *
18203592 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18203657 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18203674 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18203738 CACTTAGTGC
65 CACTTAGTGC
18203748 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18211647 original size:27 final size:27
Alignment explanation
Indices: 18211617--18211794 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18211607 ATATTGAGTC
* * * *
18211617 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18211644 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18211671 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18211699 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18211726 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18211753 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18211780 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18211795 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18211756 original size:82 final size:81
Alignment explanation
Indices: 18211638--18211793 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18211628 TGCTATATAA
* *
18211638 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18211703 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18211720 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18211784 CACTTAGTGC
65 CACTTAGTGC
18211794 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18223056 original size:105 final size:105
Alignment explanation
Indices: 18222874--18223245 Score: 633
Period size: 105 Copynumber: 3.6 Consensus size: 105
18222864 TTGTATATAA
** *
18222874 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
18222939 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
18222979 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
18223044 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
18223084 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
18223148 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
18223188 AGGGGTTGCTAAGTGCTGATT-CCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
18223246 ATAACGGTTA
Statistics
Matches: 257, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
103 32 0.12
104 51 0.20
105 173 0.67
106 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:18225966 original size:330 final size:330
Alignment explanation
Indices: 18225358--18226014 Score: 1089
Period size: 330 Copynumber: 2.0 Consensus size: 330
18225348 GTCCTAAGGG
*
18225358 ATGTTTAATGTTTAGAGATAGGGTTTGTGTACCCAAAGATAATGAAATTATTCAGAAGATTTTGC
1 ATGTTTAATGTTTAGAGATAGGGTTTGTGTACCCAAAGATAATGAAATGATTCAGAAGATTTTGC
* * *
18225423 AAGAAGCACATAATAGTTGTTTATTAGTTCACCCGGGAAGTACCAAGATGTACAACGATTTAAAG
66 AAGAAGCACATAATAGTCGTTTATTAGTTCACCCAGGAAGTACCAAGATGTACAACAATTTAAAG
* * *
18225488 AAGACGTACTGGTGGAGCGGCATGAAAAGAGATGTTTCTGAATTTGTATCAAAATGCCTGGTATG
131 AAGACGTACTGGGGGAGCGACATGAAAAGAGATGTTTCTAAATTTGTATCAAAATGCCTGGTATG
*
18225553 TCAGCAAGTTAAAGCTGAACATCAAGTGCCTTCAGGTTTATTACAACCTGTAATGGTCCCCAAAT
196 TCAGCAAGTTAAAGCTGAACATCAAGTGCCTTCAAGTTTATTACAACCTGTAATGGTCCCCAAAT
* *
18225618 GGAAGTGGGACAGAATTACCATGGACTTTGTGAGAGGACTACCTATGACTCCGAAAAAGAAAGAT
261 GGAAGTGGGACAGAATTACCATGGACTTTGTGACAAGACTACCTATGACTCCGAAAAAGAAAGAT
18225683 GTTTA
326 GTTTA
* *
18225688 ATGTTTAATGTTTAGAGATAGGGTTTGTGTACCCAAAGATAATGAACTGATTCGGAAGATTTTGC
1 ATGTTTAATGTTTAGAGATAGGGTTTGTGTACCCAAAGATAATGAAATGATTCAGAAGATTTTGC
* * *
18225753 AAGAAGCATATAATAGTCGTTTGTTAGTTCACCCAGGAAGTACCATGATGTACAACAATTTAAAG
66 AAGAAGCACATAATAGTCGTTTATTAGTTCACCCAGGAAGTACCAAGATGTACAACAATTTAAAG
* * *
18225818 AAGATGTACTGGGGGAGCGACATGAAAAGAGATGTTTCTAAATTTGTATCGAAATGCTTGGTATG
131 AAGACGTACTGGGGGAGCGACATGAAAAGAGATGTTTCTAAATTTGTATCAAAATGCCTGGTATG
* * * * *
18225883 TTAGCAAGTTAAAGCTGAATATCAAGTTCCTTCAAGTTTGTTACAACCTGTAATGGTCCCCGAAT
196 TCAGCAAGTTAAAGCTGAACATCAAGTGCCTTCAAGTTTATTACAACCTGTAATGGTCCCCAAAT
* *
18225948 GGAAGTGGGACGGAATTACCATGGATTTTGTGACAAGACTACCTATGACTCCGAAAAAGAAAGAT
261 GGAAGTGGGACAGAATTACCATGGACTTTGTGACAAGACTACCTATGACTCCGAAAAAGAAAGAT
18226013 GT
326 GT
18226015 CATATGGGTT
Statistics
Matches: 302, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
330 302 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (330 bp):
ATGTTTAATGTTTAGAGATAGGGTTTGTGTACCCAAAGATAATGAAATGATTCAGAAGATTTTGC
AAGAAGCACATAATAGTCGTTTATTAGTTCACCCAGGAAGTACCAAGATGTACAACAATTTAAAG
AAGACGTACTGGGGGAGCGACATGAAAAGAGATGTTTCTAAATTTGTATCAAAATGCCTGGTATG
TCAGCAAGTTAAAGCTGAACATCAAGTGCCTTCAAGTTTATTACAACCTGTAATGGTCCCCAAAT
GGAAGTGGGACAGAATTACCATGGACTTTGTGACAAGACTACCTATGACTCCGAAAAAGAAAGAT
GTTTA
Found at i:18242561 original size:11 final size:11
Alignment explanation
Indices: 18242508--18242562 Score: 51
Period size: 12 Copynumber: 5.0 Consensus size: 11
18242498 ATTTCAAAAA
18242508 TAATATTATTT
1 TAATATTATTT
*
18242519 TAATA--AATT
1 TAATATTATTT
*
18242528 TAATATTAAATT
1 TAATATT-ATTT
18242540 TAATACTTATTT
1 TAATA-TTATTT
*
18242552 TAATAGTATTT
1 TAATATTATTT
18242563 ATTAATTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 8 0.22
11 10 0.27
12 17 0.46
13 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (11 bp):
TAATATTATTT
Found at i:18244227 original size:23 final size:22
Alignment explanation
Indices: 18244201--18244244 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
18244191 TTATATAATG
18244201 TTGAGGTGAGT-TGCTAATGGTTA
1 TTGAGGTGA-TATGCT-ATGGTTA
*
18244224 TTGAGTTGATATGCTATGGTT
1 TTGAGGTGATATGCTATGGTT
18244245 CAAATTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.20, C:0.05, G:0.32, T:0.43
Consensus pattern (22 bp):
TTGAGGTGATATGCTATGGTTA
Found at i:18246290 original size:40 final size:41
Alignment explanation
Indices: 18246243--18246319 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
18246233 CACACCATGT
18246243 GGGGAT-AAAATCGACCCA-CGCAGCCCTACACACCAATTAC
1 GGGGATAAAAATCGACCCATC-CAGCCCTACACACCAATTAC
18246283 GGGGATAAAAATCGACCCATCCAGCCCTACACACCAA
1 GGGGATAAAAATCGACCCATCCAGCCCTACACACCAA
18246320 GTGGTACTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
40 6 0.17
41 28 0.80
42 1 0.03
ACGTcount: A:0.36, C:0.35, G:0.17, T:0.12
Consensus pattern (41 bp):
GGGGATAAAAATCGACCCATCCAGCCCTACACACCAATTAC
Found at i:18253268 original size:40 final size:40
Alignment explanation
Indices: 18253217--18253295 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
18253207 ACACACCATG
* *
18253217 TGGGGATAAAATTGACCCACCCAGCCCTACACACCAAGTA
1 TGGGGACAAAATCGACCCACCCAGCCCTACACACCAAGTA
* *
18253257 TGGGGACAAAATCGACCCATCCAGTCCTACACACCAAGT
1 TGGGGACAAAATCGACCCACCCAGCCCTACACACCAAGT
18253296 GGTACTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.33, G:0.18, T:0.15
Consensus pattern (40 bp):
TGGGGACAAAATCGACCCACCCAGCCCTACACACCAAGTA
Found at i:18255935 original size:43 final size:43
Alignment explanation
Indices: 18255865--18256069 Score: 261
Period size: 43 Copynumber: 4.8 Consensus size: 43
18255855 GTTTATTTGA
* ** *
18255865 AAAAACGCCGC-AAAAGATCATTACTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAG-TCATGGCTTTTAGCGGCATTTGTGGG
*
18255908 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCTGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
* *
18255951 AAAAGCGCCACTAAAAGTCATGGCTTTTAGCAGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
* * * *
18255994 AAAAGCGCTGCTAAAAGTCATGGCTTTTAGTGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
* *
18256037 TGAAA-CGCCGCTAAAAGTCATGGTTTTTAGCGG
1 -AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGG
18256070 TGCTTTTGTT
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
43 135 0.94
44 8 0.06
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
Found at i:18256178 original size:31 final size:31
Alignment explanation
Indices: 18256143--18256208 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
18256133 AACCCTTCCT
18256143 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATTAAATCCAACCAAAAACAGCAAATATA
* * *
18256174 GCATTGAATCCAACCAAAAATAGCAAATGTA
1 GCATTAAATCCAACCAAAAACAGCAAATATA
18256205 GCAT
1 GCAT
18256209 AAAAAATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.21, G:0.11, T:0.18
Consensus pattern (31 bp):
GCATTAAATCCAACCAAAAACAGCAAATATA
Found at i:18259537 original size:27 final size:27
Alignment explanation
Indices: 18259507--18259684 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18259497 ATATTGAGTC
* * * *
18259507 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18259534 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18259561 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18259589 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18259616 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18259643 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18259670 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18259685 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18259646 original size:82 final size:81
Alignment explanation
Indices: 18259528--18259683 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18259518 TGCTATATAA
* *
18259528 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18259593 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18259610 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18259674 CACTTAGTGC
65 CACTTAGTGC
18259684 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18267654 original size:27 final size:27
Alignment explanation
Indices: 18267624--18267801 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18267614 ATATTGAGTC
* * * *
18267624 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18267651 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18267678 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18267706 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18267733 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18267760 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18267787 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18267802 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18267763 original size:82 final size:81
Alignment explanation
Indices: 18267645--18267800 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18267635 TGCTATATAA
* *
18267645 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18267710 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18267727 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18267791 CACTTAGTGC
65 CACTTAGTGC
18267801 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18275922 original size:27 final size:27
Alignment explanation
Indices: 18275820--18275990 Score: 145
Period size: 26 Copynumber: 6.4 Consensus size: 27
18275810 GTATTGAGTC
* *
18275820 CGCACACTCAGTGCTA-ATA-TCAACT
1 CGCACACTTAGTGCCACATAGTCAACT
* * * *
18275845 CGCACACTTTAGTGCTACGTAATCAAAT
1 CGCACAC-TTAGTGCCACATAGTCAACT
*
18275873 CGCACAC-TAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCCACATAGTCAACT
* * * *
18275899 CTCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAGTCAACT
* **
18275926 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAGTCAACT
* *
18275953 C-CACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACATAGTCAACT
18275979 CGCACACTTAGT
1 CGCACACTTAGT
18275991 TGCTGTACAA
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 7 0.06
26 51 0.43
27 49 0.41
28 12 0.10
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAGTCAACT
Found at i:18275987 original size:53 final size:54
Alignment explanation
Indices: 18275820--18275990 Score: 181
Period size: 53 Copynumber: 3.2 Consensus size: 54
18275810 GTATTGAGTC
* * * * *
18275820 CGCACACTCAGTGCTA-ATA-TCAACTCGCACACTTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCTCACAC-TTAGTGCAACATAGTCAAAT
** * *
18275873 CGCACAC-TAGTGCTACATAGTCAACTCTCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCTCACACTTAGTGCAACATAGTCAAAT
* **
18275926 CGCACACTTAGTGC-ATCATATTCATTTC-CACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCTCACACTTAGTGCAACATAGTCAAAT
18275979 CGCACACTTAGT
1 CGCACACTTAGT
18275991 TGCTGTACAA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
52 7 0.07
53 65 0.66
54 27 0.27
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCTCACACTTAGTGCAACATAGTCAAAT
Found at i:18278901 original size:27 final size:27
Alignment explanation
Indices: 18278870--18279046 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
18278860 TAAATTGTAC
18278870 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18278897 TGCACTAAGTGTG-GAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18278922 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18278950 GGCACTAAGTGTGCGAGTTTGACT-TAGT
1 AGCACTAAGTGTGCGA-TTTGACTAT-GT
* *
18278978 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18279005 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18279032 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18279047 GACTCAATAT
Statistics
Matches: 125, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 21 0.17
27 83 0.66
28 21 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18279010 original size:55 final size:52
Alignment explanation
Indices: 18278870--18279046 Score: 185
Period size: 55 Copynumber: 3.3 Consensus size: 52
18278860 TAAATTGTAC
* ** *
18278870 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTG-GAAATGAATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGATTAT
* * **
18278921 GATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTTAGT
1 -A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAG-TTGA-TTA-T
* *
18278978 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGA-T-TAT
*
18279032 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18279047 GACTCAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 35 0.34
54 22 0.21
55 42 0.40
56 3 0.03
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGATTAT
Found at i:18279037 original size:82 final size:80
Alignment explanation
Indices: 18278867--18279046 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 80
18278857 GATTAAATTG
* *
18278867 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGGAAATGAATACGATGCACTAAG
18278932 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
18278947 TGCGGCACTAAGTGTGCGAGTTTGACT-TAGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTAT-GTAGCACTAAGTGTG-GAAATGAATACGAT-GCAC
* **
18279010 TAAGTGTGCGAGTTGATTA
62 TAAGTGTGCGAATTGACCA
* *
18279029 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18279047 GACTCAATAT
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 18 0.22
81 22 0.27
82 42 0.51
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:18286782 original size:27 final size:27
Alignment explanation
Indices: 18286720--18286895 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
18286710 TAAATTGTAC
*
18286720 AGCA-TAAGTGTGCGATTTGACTA-GT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
18286745 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
18286771 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
18286799 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
18286827 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
18286854 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
18286881 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18286896 GACTCAAATA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
25 3 0.02
26 16 0.13
27 85 0.67
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:18286842 original size:55 final size:53
Alignment explanation
Indices: 18286720--18286895 Score: 194
Period size: 55 Copynumber: 3.3 Consensus size: 53
18286710 TAAATTGTAC
* **
18286720 AGCA-TAAGTGTGCGATTTGACTAGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAGTTGAATATGT
* * ** *
18286771 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTA-GTAGCACTAAGTGTGCGAG-TTGAATATGT
* * *
18286827 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTA-GTAGCACTAAGTGTGCGAGTTGAATATGT
*
18286881 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18286896 GACTCAAATA
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
51 1 0.01
52 3 0.03
53 17 0.16
54 38 0.37
55 44 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:18286842 original size:82 final size:80
Alignment explanation
Indices: 18286724--18286874 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 80
18286714 TTGTACAGCA
* *
18286724 TAAGTGTGCGATTTGACTAGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGA
1 TAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGTGCGA
18286788 ATTGACCATGCGGCAC
65 ATTGACCATGCGGCAC
** *
18286804 TAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG
1 TAAGTGTGCGA-TTTGACTA-GTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGCG
*
18286869 AGTTGA
64 AATTGA
18286875 TTATATAGCA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 11 0.18
81 8 0.13
82 42 0.68
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
TAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGCGAA
TTGACCATGCGGCAC
Found at i:18286886 original size:82 final size:80
Alignment explanation
Indices: 18286717--18286895 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 80
18286707 GATTAAATTG
* *
18286717 TACAGCA-TAAGTGTGCGATTTGACTAGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
18286781 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
18286796 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTA-GTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18286860 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
18286878 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18286896 GACTCAAATA
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 5 0.06
80 11 0.13
81 9 0.11
82 57 0.70
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTGACTAGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:18292048 original size:27 final size:27
Alignment explanation
Indices: 18292017--18292194 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18292007 TAAATTGTAC
18292017 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18292044 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18292070 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18292098 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18292126 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18292153 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18292180 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18292195 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18292131 original size:82 final size:81
Alignment explanation
Indices: 18292018--18292173 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18292008 AAATTGTACA
* *
18292018 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18292082 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18292099 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18292164 TGCGAGTTGA
65 TGCGAATTGA
18292174 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18292185 original size:82 final size:81
Alignment explanation
Indices: 18292014--18292194 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
18292004 GATTAAATTG
* *
18292014 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18292079 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18292095 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18292159 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18292177 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18292195 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18300082 original size:27 final size:27
Alignment explanation
Indices: 18300051--18300228 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18300041 TAAATTGTAC
18300051 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18300078 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18300104 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18300132 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18300160 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18300187 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18300214 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18300229 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18300165 original size:82 final size:81
Alignment explanation
Indices: 18300052--18300207 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18300042 AAATTGTACA
* *
18300052 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18300116 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18300133 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18300198 TGCGAGTTGA
65 TGCGAATTGA
18300208 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18300219 original size:82 final size:81
Alignment explanation
Indices: 18300048--18300228 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
18300038 GATTAAATTG
* *
18300048 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18300113 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18300129 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18300193 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18300211 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18300229 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18308197 original size:16 final size:17
Alignment explanation
Indices: 18308166--18308198 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18308156 TATGTAGCTA
*
18308166 GATTTTTTGTATAAATT
1 GATTTTTTGGATAAATT
18308183 GATTTTTTGGA-AAATT
1 GATTTTTTGGATAAATT
18308199 ATATTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (17 bp):
GATTTTTTGGATAAATT
Found at i:18308400 original size:8 final size:8
Alignment explanation
Indices: 18308385--18308423 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
18308375 CTTCACACAC
18308385 AAAAATAA
1 AAAAATAA
*
18308393 ATAAATAA
1 AAAAATAA
*
18308401 ATAAATAA
1 AAAAATAA
18308409 TAAAAATAA
1 -AAAAATAA
18308418 AAAAAT
1 AAAAAT
18308424 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATAA
Found at i:18308432 original size:18 final size:17
Alignment explanation
Indices: 18308385--18308423 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
18308375 CTTCACACAC
*
18308385 AAAAATAA-ATAAATAA
1 AAAAATAATAAAAATAA
*
18308401 ATAAATAATAAAAATAA
1 AAAAATAATAAAAATAA
18308418 AAAAAT
1 AAAAAT
18308424 TATTAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATAATAAAAATAA
Found at i:18314422 original size:50 final size:48
Alignment explanation
Indices: 18314265--18314439 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 48
18314255 TCACTTGCGT
* *
18314265 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACA-TTATG-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATATGTA
*
18314311 GAGCTAGTGTAAGACATGTCTGGGA-ATGCATCGGCTAC-GAAATGT-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATATGTA
* * *
18314356 G-TC-AGTGTCAGACCATGTCTGCGACATGGCATCGGC-ACAGATATGCTA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGATATG-TA
* *
18314404 GAGCTTGTGTAAGACCATGTCTGGGTCATGGCATCG
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
18314440 TCACCTGCAC
Statistics
Matches: 107, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 8 0.07
44 11 0.10
45 21 0.20
46 37 0.35
47 1 0.01
48 1 0.01
49 1 0.01
50 27 0.25
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (48 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATATGTA
Found at i:18315546 original size:20 final size:21
Alignment explanation
Indices: 18315507--18315546 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18315497 GAATTAATGG
18315507 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
*
18315528 CTACATGGGCGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
18315547 GTTCTAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:18320088 original size:4 final size:4
Alignment explanation
Indices: 18320081--18320129 Score: 64
Period size: 4 Copynumber: 12.2 Consensus size: 4
18320071 TTGCTTGTAC
* *
18320081 ATAA ATAA ATAA ATAA ATAAA ATGA A-AA TTAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
18320129 A
1 A
18320130 GGCTCAAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 1 0.03
4 34 0.87
5 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:18321624 original size:18 final size:18
Alignment explanation
Indices: 18321601--18321635 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
18321591 AATCTGAATG
18321601 TATTTCCCAAT-TTAATTT
1 TATTT-CCAATATTAATTT
18321619 TATTTCCAATATTAATT
1 TATTTCCAATATTAATT
18321636 AATTGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTTCCAATATTAATTT
Found at i:18325391 original size:49 final size:50
Alignment explanation
Indices: 18325333--18325559 Score: 262
Period size: 49 Copynumber: 4.6 Consensus size: 50
18325323 ATCTCGTATG
* *
18325333 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAATTATCCAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGATACA
* * ** *
18325382 CGTAGTAGCCTGCACTTAGTACTACAC-CGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGATACA
* * * * * * *
18325431 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTATCCGATACA
* * * *
18325482 CATAATAGCCTGCACTTAGTACTACACATGCTACC-AATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGATACA
18325531 CATAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
18325560 ATGACCTCAC
Statistics
Matches: 151, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
48 3 0.02
49 102 0.68
50 10 0.07
51 36 0.24
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGATACA
Found at i:18325507 original size:100 final size:97
Alignment explanation
Indices: 18325333--18325559 Score: 267
Period size: 100 Copynumber: 2.3 Consensus size: 97
18325323 ATCTCGTATG
* * * *
18325333 CATAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATCCAATACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCAATACACATAATAGCCTGCACT
* *
18325398 TAGTACTACACCGTG-ACCTAACCATCTGATACA
66 TAGTACTACA-CATGCACC-AACCATCCGATACA
* * *** *
18325431 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAATAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATCCAATACACATAATAGCCTGCA
** *
18325496 CTTAGTACTACACATGCTACCAATTATCCGGTACA
64 CTTAGTACTACACATGC-ACCAACCATCCGATACA
18325531 CATAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
18325560 ATGACCTCAC
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
98 30 0.28
99 6 0.06
100 70 0.64
101 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (97 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCAATACACATAATAGCCTGCACT
TAGTACTACACATGCACCAACCATCCGATACA
Found at i:18328617 original size:14 final size:16
Alignment explanation
Indices: 18328598--18328630 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
18328588 TTTTTTTAAA
18328598 AAATTA-TAAAA-ATT
1 AAATTATTAAAATATT
18328612 AAATTATTAAAATATT
1 AAATTATTAAAATATT
18328628 AAA
1 AAA
18328631 ATAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATTATTAAAATATT
Found at i:18350571 original size:26 final size:26
Alignment explanation
Indices: 18350535--18350588 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
18350525 GTTTGATGTG
18350535 TTAGCAAGTAAAAGTAGAACACCAAT
1 TTAGCAAGTAAAAGTAGAACACCAAT
18350561 TTAGCAAGTAAAAGTAGAACACCAAT
1 TTAGCAAGTAAAAGTAGAACACCAAT
18350587 TT
1 TT
18350589 CCTTCTGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (26 bp):
TTAGCAAGTAAAAGTAGAACACCAAT
Found at i:18355856 original size:13 final size:13
Alignment explanation
Indices: 18355838--18355866 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
18355828 CGTAAACAAT
18355838 TTTTTGTGTCATG
1 TTTTTGTGTCATG
18355851 TTTTTGTGTCATG
1 TTTTTGTGTCATG
18355864 TTT
1 TTT
18355867 ATCATAGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.21, T:0.66
Consensus pattern (13 bp):
TTTTTGTGTCATG
Found at i:18358484 original size:19 final size:19
Alignment explanation
Indices: 18358460--18358496 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18358450 TTAAATTTTA
* *
18358460 ATTAAAATTATTAAAAATT
1 ATTAAAATCATAAAAAATT
18358479 ATTAAAATCATAAAAAAT
1 ATTAAAATCATAAAAAAT
18358497 ATAGAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAAAATCATAAAAAATT
Found at i:18358845 original size:14 final size:14
Alignment explanation
Indices: 18358826--18358855 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18358816 TTTTTATGCA
18358826 TTTTATAATTTTAT
1 TTTTATAATTTTAT
*
18358840 TTTTATGATTTTAT
1 TTTTATAATTTTAT
18358854 TT
1 TT
18358856 AAAATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTTATAATTTTAT
Found at i:18358896 original size:19 final size:19
Alignment explanation
Indices: 18358860--18358903 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
18358850 TTATTTAAAA
18358860 TTTTATAATTTAATAATAT
1 TTTTATAATTTAATAATAT
*
18358879 TTTTATGAATTTTA-AATAT
1 TTTTAT-AATTTAATAATAT
18358898 TTTTAT
1 TTTTAT
18358904 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTATAATTTAATAATAT
Found at i:18359241 original size:91 final size:92
Alignment explanation
Indices: 18359055--18359268 Score: 256
Period size: 91 Copynumber: 2.4 Consensus size: 92
18359045 TTAAATGGTC
** * *
18359055 TTTTTGATGTATTTTGACAGTTTAAGTACTCAATTGAGTGCAAAAAAAAAAGCAAGAGATTAATT
1 TTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAAAGCAAGAGATTAATT
* * * **
18359120 GCTTTTTTTGAAAAAGTTTGGGGGCC-
66 GCATTTTGTAAAAAAGTTTGAAGGCCT
* * * * *
18359146 TTTTTGATACATTTTGAAAGTTAAAGTGCTCAACTGAGTGCAAAAAAAAAAG-TAGGGCTTAATT
1 TTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAAAGCAAGAGATTAATT
18359210 GCATTTTGTAAAAAAGTTTGAAGGCCTT
66 GCATTTTGTAAAAAAGTTTGAAGGCC-T
*
18359238 TTTTTG-TACATTTTAAAAGTTTAAGTA-TCAA
1 TTTTTGATACATTTTGAAAGTTTAAGTACTCAA
18359269 ATTGAATGAA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
90 34 0.33
91 64 0.62
92 6 0.06
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.37
Consensus pattern (92 bp):
TTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAAAGCAAGAGATTAATT
GCATTTTGTAAAAAAGTTTGAAGGCCT
Found at i:18359572 original size:6 final size:6
Alignment explanation
Indices: 18359562--18359596 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
18359552 TTTGTTGCTA
*
18359562 AAACGA AAACGT AAACGT AAACGT AAACGT AAACG
1 AAACGT AAACGT AAACGT AAACGT AAACGT AAACG
18359597 AGAGGATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (6 bp):
AAACGT
Found at i:18362854 original size:25 final size:27
Alignment explanation
Indices: 18362817--18362870 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
18362807 TCAAACATGC
18362817 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
18362843 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
18362869 AT
1 AT
18362871 AACAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:18365690 original size:40 final size:40
Alignment explanation
Indices: 18365557--18365742 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
18365547 TCGAATGATG
* * * * *
18365557 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
18365598 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
18365637 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
18365677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
18365718 -CCGGGCTATGTCCCGAAGGCTTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18365743 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 34 0.27
40 66 0.52
41 26 0.20
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:18365760 original size:80 final size:78
Alignment explanation
Indices: 18365558--18365775 Score: 244
Period size: 80 Copynumber: 2.7 Consensus size: 78
18365548 CGAATGATGT
* * **
18365558 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGC-GAGTAG-CTATATCCGGGTTAAG-TCCGAAGGCATT
*
18365622 GGTGCGAGTTACTAAT
63 GGTGCGAGTTACTAAA
* * *
18365638 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAG-TAGCTATATCCGGGTTAAGT-CCGAAGGCATTG
18365702 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* ** *
18365718 CCGGGCTATGTCCCGAAGGCTTTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTAGCTATATCCGGGTT-AAGTCCGAAGG
18365776 TACGTGATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 51 0.43
80 66 0.56
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTAGCTATATCCGGGTTAAGTCCGAAGGCATTGGT
GCGAGTTACTAAA
Found at i:18373702 original size:40 final size:40
Alignment explanation
Indices: 18373596--18373739 Score: 179
Period size: 39 Copynumber: 3.6 Consensus size: 40
18373586 TCGAATGATG
* * *
18373596 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
18373636 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
18373675 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
18373715 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18373740 CGAGTGGTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 48 0.53
40 40 0.44
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:18375646 original size:26 final size:26
Alignment explanation
Indices: 18375610--18375719 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
18375600 CATGAAATTC
18375610 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
18375636 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
18375662 TTATCATGAAACATTTAACTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
18375688 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
18375714 TTATCA
1 TTATCA
18375720 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:18378215 original size:32 final size:32
Alignment explanation
Indices: 18378176--18378239 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
18378166 AGATACTTTC
18378176 AAAAATACTTTATCACCGACTTGATACTCAAT
1 AAAAATACTTTATCACCGACTTGATACTCAAT
* *
18378208 AAAAATACTTTATTACTGACTTGATACTCAAT
1 AAAAATACTTTATCACCGACTTGATACTCAAT
18378240 TTCTTTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (32 bp):
AAAAATACTTTATCACCGACTTGATACTCAAT
Found at i:18381638 original size:224 final size:224
Alignment explanation
Indices: 18381248--18381693 Score: 777
Period size: 224 Copynumber: 2.0 Consensus size: 224
18381238 GCTACTAGCT
*
18381248 CTATTACCGGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
1 CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
* * * **
18381313 TTTTTCTTTCTTGATCATCTTAGGATAGTCATTAATATAGTGGCCTTGAGAACCACATTGGAAAC
66 TTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAAC
18381378 AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGATTTA
131 AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGATTTA
18381443 GAAGGCCGAGCATTACCCACACTAGCCCC
196 GAAGGCCGAGCATTACCCACACTAGCCCC
* *
18381472 CTATTACCAGTATTTCTCAGGGGTCTTCCTTTTGTAGCCGTACTATTC-AGTCTCGCACTCTGAA
1 CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGA-TCTCGCACTCTGAA
*
18381536 ATTTTTCTTTCTCGATCATCTCAGGACAGTTATTAATATAGTGGCCTTGAGAACCACATCAGAAA
65 ATTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAA
* *
18381601 CAAGATCCATCATTCGTCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGGTTT
130 CAAGATCCATCATTCATCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGATTT
18381666 AGAAGGCCGAGCATTACCCACACTAGCC
195 AGAAGGCCGAGCATTACCCACACTAGCC
18381694 ACAGATGTAC
Statistics
Matches: 210, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
223 1 0.00
224 209 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (224 bp):
CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
TTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAAC
AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGATTTA
GAAGGCCGAGCATTACCCACACTAGCCCC
Found at i:18385051 original size:18 final size:19
Alignment explanation
Indices: 18385028--18385071 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
18385018 TGTTATTTAC
*
18385028 ATTTGTGGAAGA-AATCAA
1 ATTTGTGGAACATAATCAA
18385046 ATTTGT-GAACATAATCAA
1 ATTTGTGGAACATAATCAA
18385064 ACTTTGTG
1 A-TTTGTG
18385072 AGGGTTCTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (19 bp):
ATTTGTGGAACATAATCAA
Found at i:18385324 original size:15 final size:15
Alignment explanation
Indices: 18385287--18385325 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
18385277 GAATAACCTA
* *
18385287 AACCCTAAGCTTAAC
1 AACCCTAGGCCTAAC
18385302 AACCCTAGGCCTAAC
1 AACCCTAGGCCTAAC
18385317 AACCCTAGG
1 AACCCTAGG
18385326 AAGTCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.36, C:0.36, G:0.13, T:0.15
Consensus pattern (15 bp):
AACCCTAGGCCTAAC
Found at i:18387733 original size:125 final size:125
Alignment explanation
Indices: 18387579--18387829 Score: 493
Period size: 125 Copynumber: 2.0 Consensus size: 125
18387569 TGCTATCATT
18387579 TACCATATACAAACATCACCTACTTACCAACTTAAACCATGCAAACCACCACATCCATTAAAGTC
1 TACCATATACAAACATCACCTACTTACCAACTTAAACCATGCAAACCACCACATCCATTAAAGTC
*
18387644 ATCATCATATGTATATATACTTAAACCAATATTAGCCAATTTCAAAAGCCATTTATAAAA
66 ATCATCATATGTATATATACTTAAACCAATATTAGCCAATTTCAAAAGCCATTTACAAAA
18387704 TACCATATACAAACATCACCTACTTACCAACTTAAACCATGCAAACCACCACATCCATTAAAGTC
1 TACCATATACAAACATCACCTACTTACCAACTTAAACCATGCAAACCACCACATCCATTAAAGTC
18387769 ATCATCATATGTATATATACTTAAACCAATATTAGCCAATTTCAAAAGCCATTTACAAAA
66 ATCATCATATGTATATATACTTAAACCAATATTAGCCAATTTCAAAAGCCATTTACAAAA
18387829 T
1 T
18387830 GAATTATCAA
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
125 125 1.00
ACGTcount: A:0.43, C:0.26, G:0.04, T:0.27
Consensus pattern (125 bp):
TACCATATACAAACATCACCTACTTACCAACTTAAACCATGCAAACCACCACATCCATTAAAGTC
ATCATCATATGTATATATACTTAAACCAATATTAGCCAATTTCAAAAGCCATTTACAAAA
Found at i:18388463 original size:42 final size:42
Alignment explanation
Indices: 18388411--18388508 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
18388401 ATAGCCCAGC
18388411 TATGGTCTTACA-AGAAATCTCATATTGATGCCATATCCTAGA
1 TATGGTCTTACACA-AAATCTCATATTGATGCCATATCCTAGA
* *
18388453 TGTGGTCTTACACAAAATCTCATATTGATGTCATATCCTAGA
1 TATGGTCTTACACAAAATCTCATATTGATGCCATATCCTAGA
18388495 TATGGTCTTACACA
1 TATGGTCTTACACA
18388509 TAGTCTCGGT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATATTGATGCCATATCCTAGA
Found at i:18389826 original size:85 final size:85
Alignment explanation
Indices: 18389685--18389948 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
18389675 GGCCGGCCAT
18389685 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
18389750 GTAAGGATTAATAAAATAAT
66 GTAAGGATTAATAAAATAAA
18389770 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
18389835 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
18389855 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
18389920 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
18389940 GGGCATGGG
1 GAGCATGGG
18389949 CAATAAAATA
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:18392031 original size:47 final size:47
Alignment explanation
Indices: 18391891--18392371 Score: 660
Period size: 47 Copynumber: 10.1 Consensus size: 47
18391881 TTAGGATTTT
* *
18391891 ATGTGATGGATGTGAACATGCGTA--TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* ** *
18391936 ATGTGATGGATGTGAACCCGTATATATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
18391987 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
18392034 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
18392081 ATGTGATGAATGTGAACATGCATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
18392128 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
18392181 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
18392228 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
18392275 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
18392322 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
18392369 ATG
1 ATG
18392372 CGAAACGTGT
Statistics
Matches: 396, Mismatches: 28, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
45 16 0.04
47 294 0.74
48 1 0.00
49 5 0.01
51 35 0.09
52 1 0.00
53 44 0.11
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:18392087 original size:22 final size:22
Alignment explanation
Indices: 18392060--18392134 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
18392050 CATGCGTATG
18392060 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
18392082 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
18392105 TGCGTGATAAGGCCGAATGGCCAA
1 T--GTGATAAGGCCGAATGGCCAA
18392129 TGTGAT
1 TGTGAT
18392135 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:18392206 original size:194 final size:191
Alignment explanation
Indices: 18391891--18392371 Score: 767
Period size: 194 Copynumber: 2.5 Consensus size: 191
18391881 TTAGGATTTT
* * * *
18391891 ATGTGATGGATGTGAACATGCGTATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACCCG
1 ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTG
* *
18391956 -TATATATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 ATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
* *
18392020 AGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
131 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
18392081 ATGTGATGAATGTGAACATGCATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
18392146 TGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
64 TG-ATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
18392211 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
128 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
18392275 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGC--ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
18392340 TG--A-ATATAT--GTGGTAAGGCCGAATGGCTAATG
64 TGATATATATATGCGTGATAAGGCCGAATGGCCAATG
18392372 CGAAACGTGT
Statistics
Matches: 273, Mismatches: 12, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
188 21 0.08
190 29 0.11
191 1 0.00
192 38 0.14
194 180 0.66
196 4 0.01
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (191 bp):
ATGTGATGAATGTGAACATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTG
ATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:18392208 original size:23 final size:23
Alignment explanation
Indices: 18392181--18392255 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
18392171 CGAATGGCCA
18392181 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
18392204 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
18392228 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
18392251 ATGTG
1 ATGTG
18392256 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:18392434 original size:46 final size:46
Alignment explanation
Indices: 18392345--18392435 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
18392335 GAACATGAAT
* * * *
18392345 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
18392391 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
18392436 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:18392442 original size:141 final size:140
Alignment explanation
Indices: 18391891--18392420 Score: 505
Period size: 147 Copynumber: 3.7 Consensus size: 140
18391881 TTAGGATTTT
* ** * * *
18391891 ATGTGATGGATGTGAACATG--CGTATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACC
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAA--
*** * ** * * *
18391954 CGTATATATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
63 C--ATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
18392019 AAGGCCGAATGGCCA
126 AAGGCCGAATGGCCA
* * ** * * *
18392034 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* * * * ** *
18392099 TGCATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTG
65 TGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCATATAT--GAG
18392164 ATAAGGCCGAATGGCCA
124 ATAAGGCCGAATGGCCA
** * * *
18392181 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* *
18392246 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
65 TGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
18392311 CCGAATGGCCA
130 CCGAATGGCCA
* *
18392322 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--A
* *
18392386 GATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
63 CATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
18392421 GATATGTACG
Statistics
Matches: 344, Mismatches: 31, Indels: 27
0.86 0.08 0.07
Matches are distributed among these distances:
139 5 0.01
140 20 0.06
141 110 0.32
142 11 0.03
143 28 0.08
145 43 0.12
146 1 0.00
147 126 0.37
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
CGAATGGCCA
Found at i:18392630 original size:37 final size:37
Alignment explanation
Indices: 18392580--18392725 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
18392570 GGAAATATAT
18392580 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
18392617 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
18392654 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
18392691 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
18392726 CGTCTGAGCT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:18396072 original size:15 final size:15
Alignment explanation
Indices: 18396052--18396084 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
18396042 TTTACTAAAT
18396052 TTAGCAAACAACTGC
1 TTAGCAAACAACTGC
18396067 TTAGCAAACAACTGC
1 TTAGCAAACAACTGC
18396082 TTA
1 TTA
18396085 TCTCTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (15 bp):
TTAGCAAACAACTGC
Found at i:18399299 original size:42 final size:42
Alignment explanation
Indices: 18399189--18399326 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 42
18399179 TACCACACCA
* * ** *
18399189 ATGCCATATCCCAGATGTGGTCTTATATAG-GATCTTGTTTCG
1 ATGCCATATCCCAGATGTGGTCTTACA-AGAAATCTCATATCG
* * *
18399231 ATGCCAATAGCCCAGCTATGGTCTTACAAGAAATCTCATATCG
1 ATGCC-ATATCCCAGATGTGGTCTTACAAGAAATCTCATATCG
* * *
18399274 ATGCCATATCCTAGATGTGGTCTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGATGTGGTCTTACAAGAAATCTCATATCG
18399316 ATGCCATATCC
1 ATGCCATATCC
18399327 TAGTCTCGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 49 0.61
43 31 0.39
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATGTGGTCTTACAAGAAATCTCATATCG
Found at i:18404924 original size:37 final size:37
Alignment explanation
Indices: 18404874--18404947 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
18404864 ACTGCTGCCA
18404874 AGGTTTTCCAATCTGGCTTTTATTGGCAGAGTCTGTT
1 AGGTTTTCCAATCTGGCTTTTATTGGCAGAGTCTGTT
*
18404911 AGGTTTTCCAATCTGGCTTTTATTGGTAGAGTCTGTT
1 AGGTTTTCCAATCTGGCTTTTATTGGCAGAGTCTGTT
18404948 CAAAGATGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.16, C:0.15, G:0.24, T:0.45
Consensus pattern (37 bp):
AGGTTTTCCAATCTGGCTTTTATTGGCAGAGTCTGTT
Found at i:18412274 original size:22 final size:22
Alignment explanation
Indices: 18412243--18412375 Score: 149
Period size: 22 Copynumber: 6.0 Consensus size: 22
18412233 ACTCTGCATA
*
18412243 ACATGCGAGCCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
*
18412265 ACATGAGAGCCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
* * * *
18412287 CCATGTGAGCTTGTACGTTAGT
1 ACATGTGAGCCTATATGTTAGT
* ** *
18412309 ATATGCAAGCCTATACGTTAGT
1 ACATGTGAGCCTATATGTTAGT
* *
18412331 TCATGTGAACCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
*
18412353 ACATGTGAGCTTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
18412375 A
1 A
18412376 TGTGCAAACC
Statistics
Matches: 90, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 90 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (22 bp):
ACATGTGAGCCTATATGTTAGT
Found at i:18412358 original size:66 final size:66
Alignment explanation
Indices: 18412245--18412382 Score: 195
Period size: 66 Copynumber: 2.1 Consensus size: 66
18412235 TCTGCATAAC
* * * * *
18412245 ATGCGAGCCTATATGTTAGTACATGAGAGCCTATATGTTAGTCCATGTGAGCTTGTACGTTAGTA
1 ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACGTTAGTA
18412310 T
66 T
* * *
18412311 ATGCAAGCCTATACGTTAGTTCATGTGAACCTATATGTTAGTACATGTGAGCTTATATGTTAGTA
1 ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACGTTAGTA
18412376 T
66 T
*
18412377 GTGCAA
1 ATGCAA
18412383 ACCCCTAAGG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (66 bp):
ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACGTTAGTA
T
Found at i:18412401 original size:15 final size:15
Alignment explanation
Indices: 18412381--18412421 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
18412371 TAGTATGTGC
18412381 AAACCCCTAAGGTGA
1 AAACCCCTAAGGTGA
*
18412396 AAACCCCTAAGGTGC
1 AAACCCCTAAGGTGA
18412411 AAACCCCTAAG
1 AAACCCCTAAG
18412422 TTTGTGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.32, G:0.17, T:0.12
Consensus pattern (15 bp):
AAACCCCTAAGGTGA
Found at i:18416451 original size:17 final size:17
Alignment explanation
Indices: 18416431--18416469 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
18416421 TACATAAATG
*
18416431 ATATATATACAATAAAA
1 ATATATAAACAATAAAA
*
18416448 ATATATAAAGAATAAAA
1 ATATATAAACAATAAAA
18416465 ATATA
1 ATATA
18416470 AAATAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
ATATATAAACAATAAAA
Found at i:18416533 original size:26 final size:25
Alignment explanation
Indices: 18416503--18416560 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
18416493 AAAATATACT
18416503 TATAATAAAAAAATATGATATTTAATA
1 TATAATAAAAAAATA-G-TATTTAATA
***
18416530 -ATAATTTTAAAATAGTATTTAATA
1 TATAATAAAAAAATAGTATTTAATA
18416554 TATAATA
1 TATAATA
18416561 TATAATAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 9 0.35
25 6 0.23
26 11 0.42
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (25 bp):
TATAATAAAAAAATAGTATTTAATA
Found at i:18416538 original size:12 final size:13
Alignment explanation
Indices: 18416520--18416568 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
18416510 AAAAAATATG
18416520 ATATTTAATAATA
1 ATATTTAATAATA
18416533 AT-TTTAA-AATA
1 ATATTTAATAATA
*
18416544 GTATTTAATATATA
1 ATATTTAATA-ATA
*
18416558 ATATATAATAA
1 ATATTTAATAA
18416569 CAAAAACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:18416948 original size:7 final size:7
Alignment explanation
Indices: 18416936--18416990 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
18416926 ATATGTAAGA
18416936 ATAATAT
1 ATAATAT
18416943 ATAATAT
1 ATAATAT
18416950 AT-ATA-
1 ATAATAT
18416955 AGTAATAT
1 A-TAATAT
18416963 ATAA-A-
1 ATAATAT
18416968 ATAATTAT
1 ATAA-TAT
*
18416976 ATGATAT
1 ATAATAT
18416983 ATAATAT
1 ATAATAT
18416990 A
1 A
18416991 AAAATAAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
5 5 0.12
6 5 0.12
7 26 0.65
8 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (7 bp):
ATAATAT
Found at i:18416948 original size:35 final size:33
Alignment explanation
Indices: 18416895--18416985 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 33
18416885 TATATAGTAG
* *
18416895 TATAAAA-AATGACATAATA-ATATGAAAGTATATA
1 TATAAAATAATTATATAATATATAT--AAGTA-ATA
*
18416929 TGTAAGAATAA-TATATAATATATATAAGTAATA
1 TATAA-AATAATTATATAATATATATAAGTAATA
*
18416962 TATAAAATAATTATATGATATATA
1 TATAAAATAATTATATAATATATA
18416986 ATATAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
32 5 0.10
33 19 0.40
34 9 0.19
35 9 0.19
36 6 0.12
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (33 bp):
TATAAAATAATTATATAATATATATAAGTAATA
Found at i:18416962 original size:11 final size:10
Alignment explanation
Indices: 18416935--18416988 Score: 51
Period size: 9 Copynumber: 5.4 Consensus size: 10
18416925 TATATGTAAG
18416935 AATAATATAT
1 AATAATATAT
18416945 AAT-ATATAT
1 AATAATATAT
18416954 AAGTAATATAT
1 AA-TAATATAT
18416965 AA-AATA-ATT
1 AATAATATA-T
*
18416974 ATATGATATAT
1 A-ATAATATAT
18416985 AATA
1 AATA
18416989 TAAAAATAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
8 1 0.03
9 14 0.39
10 7 0.19
11 13 0.36
12 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (10 bp):
AATAATATAT
Found at i:18416970 original size:22 final size:22
Alignment explanation
Indices: 18416910--18416993 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 22
18416900 AAAATGACAT
*
18416910 AATAATATGAAAGTATATATGTAAG
1 AATAATAT-AAA--ATATATATAAG
*
18416935 AATAATATATAATATATATAAG
1 AATAATATAAAATATATATAAG
* *
18416957 TAAT-ATATAAAATAATTATATGAT
1 -AATAATATAAAAT-A-TATATAAG
18416981 ATATAATATAAAA
1 A-ATAATATAAAA
18416994 ATAAGATTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
22 18 0.37
23 5 0.10
24 10 0.20
25 16 0.33
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
AATAATATAAAATATATATAAG
Found at i:18423242 original size:12 final size:13
Alignment explanation
Indices: 18423224--18423272 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
18423214 AAAAAATATG
18423224 ATATTTAATAATA
1 ATATTTAATAATA
18423237 AT-TTTAA-AATA
1 ATATTTAATAATA
*
18423248 GTATTTAATATATA
1 ATATTTAATA-ATA
*
18423262 ATATATAATAA
1 ATATTTAATAA
18423273 CAAAAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:18423271 original size:24 final size:24
Alignment explanation
Indices: 18423216--18423269 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
18423206 CTTATAATAA
*
18423216 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
18423242 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
18423268 AA
1 AA
18423270 TAACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:18423653 original size:35 final size:33
Alignment explanation
Indices: 18423600--18423690 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 33
18423590 TATATAGTAG
* *
18423600 TATAAAA-AATGACATAATA-ATATGAAAGTATATA
1 TATAAAATAATTATATAATATATAT--AAGTA-ATA
*
18423634 TGTAAGAATAA-TATATAATATATATAAGTAATA
1 TATAA-AATAATTATATAATATATATAAGTAATA
*
18423667 TATAAAATAATTATATGATATATA
1 TATAAAATAATTATATAATATATA
18423691 GTATAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
32 5 0.10
33 19 0.40
34 9 0.19
35 9 0.19
36 6 0.12
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (33 bp):
TATAAAATAATTATATAATATATATAAGTAATA
Found at i:18423675 original size:22 final size:22
Alignment explanation
Indices: 18423615--18423675 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 22
18423605 AAAATGACAT
*
18423615 AATAATATGAAAGTATATATGTAAG
1 AATAATAT-AAA--ATATATATAAG
*
18423640 AATAATATATAATATATATAAG
1 AATAATATAAAATATATATAAG
18423662 TAAT-ATATAAAATA
1 -AATAATATAAAATA
18423676 ATTATATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 19 0.59
23 3 0.09
24 2 0.06
25 8 0.25
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.34
Consensus pattern (22 bp):
AATAATATAAAATATATATAAG
Found at i:18424630 original size:62 final size:62
Alignment explanation
Indices: 18424554--18424675 Score: 244
Period size: 62 Copynumber: 2.0 Consensus size: 62
18424544 CCTTTTACAG
18424554 ATTAGAAAAAGGGTCTTTATAGCCTCTTCTAAAAATATTTACATTTTGGGGAAAGAAATCGA
1 ATTAGAAAAAGGGTCTTTATAGCCTCTTCTAAAAATATTTACATTTTGGGGAAAGAAATCGA
18424616 ATTAGAAAAAGGGTCTTTATAGCCTCTTCTAAAAATATTTACATTTTGGGGAAAGAAATC
1 ATTAGAAAAAGGGTCTTTATAGCCTCTTCTAAAAATATTTACATTTTGGGGAAAGAAATC
18424676 TTCGATTTCT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (62 bp):
ATTAGAAAAAGGGTCTTTATAGCCTCTTCTAAAAATATTTACATTTTGGGGAAAGAAATCGA
Done.