Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 68 of 332
Found at i:20660538 original size:46 final size:46
Alignment explanation
Indices: 20660488--20660662 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
20660478 TGGTTGAGCA
20660488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
20660534 TCCGAACTCGATGA-TTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
20660578 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20660626 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20660663 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 14 0.13
46 60 0.56
47 14 0.13
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20662712 original size:14 final size:14
Alignment explanation
Indices: 20662695--20662746 Score: 86
Period size: 14 Copynumber: 3.7 Consensus size: 14
20662685 TTAAAACTCT
20662695 AACCCCTAAACCCC
1 AACCCCTAAACCCC
20662709 AACCCCTAAACCCC
1 AACCCCTAAACCCC
*
20662723 AACCCTTAAACCCC
1 AACCCCTAAACCCC
*
20662737 AAGCCCTAAA
1 AACCCCTAAA
20662747 ACTAACCTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.38, C:0.50, G:0.02, T:0.10
Consensus pattern (14 bp):
AACCCCTAAACCCC
Found at i:20662809 original size:28 final size:29
Alignment explanation
Indices: 20662764--20662825 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
20662754 TCTAAACCCA
* * * *
20662764 TAAACTATAGATCGTAAATCCCAAACTC-
1 TAAACTATAAACCATAAATCACAAACTCT
*
20662792 TAAACTATAAACCATAAATCATAAACTCT
1 TAAACTATAAACCATAAATCACAAACTCT
20662821 TAAAC
1 TAAAC
20662826 CAAAAACCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.48, C:0.23, G:0.03, T:0.26
Consensus pattern (29 bp):
TAAACTATAAACCATAAATCACAAACTCT
Found at i:20662838 original size:22 final size:21
Alignment explanation
Indices: 20662786--20662838 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 21
20662776 CGTAAATCCC
* *
20662786 AAACTCTAAACTATAAACCAT
1 AAACCCTAAACTATAAACCAA
* * *
20662807 AAATCATAAACTCTTAAACCAA
1 AAACCCTAAACT-ATAAACCAA
20662829 AAACCCTAAA
1 AAACCCTAAA
20662839 ATCTAAAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCCTAAACTATAAACCAA
Found at i:20664845 original size:79 final size:81
Alignment explanation
Indices: 20664705--20664889 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
20664695 TTGAATGATG
* *
20664705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
20664769 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
20664784 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
20664846 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
20664864 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20664890 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:20664903 original size:40 final size:40
Alignment explanation
Indices: 20664706--20664889 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
20664696 TGAATGATGT
* * * *
20664706 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
20664746 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
20664786 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
20664824 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20664865 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
20664890 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:20664911 original size:79 final size:79
Alignment explanation
Indices: 20664758--20664922 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
20664748 GGACTAAGAT
* * **
20664758 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
20664823 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
20664837 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
20664900 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
20664916 CCGAAGG
1 CCGAAGG
20664923 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:20666301 original size:6 final size:7
Alignment explanation
Indices: 20666284--20666309 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
20666274 AATCTTCAAA
20666284 AAAAATT
1 AAAAATT
20666291 AAAAATT
1 AAAAATT
20666298 AAAAATT
1 AAAAATT
20666305 AAAAA
1 AAAAA
20666310 ACTTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:20666438 original size:10 final size:10
Alignment explanation
Indices: 20666423--20666461 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
20666413 AAAATTTGAA
20666423 AGAAAAAAAT
1 AGAAAAAAAT
20666433 AGAAAAAAAT
1 AGAAAAAAAT
*
20666443 -GGAAAAAAT
1 AGAAAAAAAT
*
20666452 GGAAAAAAAT
1 AGAAAAAAAT
20666462 TTAAAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:20666448 original size:8 final size:9
Alignment explanation
Indices: 20666426--20666459 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
20666416 ATTTGAAAGA
*
20666426 AAAAAATAGA
1 AAAAAAT-GG
20666436 AAAAAATGG
1 AAAAAATGG
20666445 AAAAAATGG
1 AAAAAATGG
20666454 AAAAAA
1 AAAAAA
20666460 ATTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (9 bp):
AAAAAATGG
Found at i:20668052 original size:34 final size:34
Alignment explanation
Indices: 20668012--20668143 Score: 184
Period size: 34 Copynumber: 4.0 Consensus size: 34
20668002 ATGTAATTGG
*
20668012 AAATTTTATTTCTTTTTGTAAATCATTTTTCTTT
1 AAATTTTATTTCTTTGTGTAAATCATTTTTCTTT
*
20668046 AAATTTTATTTCTTTGTGTAAATAATTTTTCTTT
1 AAATTTTATTTCTTTGTGTAAATCATTTTTCTTT
* *
20668080 AAATTTTATTTATTTGTGT--A--ATTTCTCTTT
1 AAATTTTATTTCTTTGTGTAAATCATTTTTCTTT
20668110 AAATTTTATTAT-TTTGTGTAAATCATTTTTCTTT
1 AAATTTTATT-TCTTTGTGTAAATCATTTTTCTTT
20668144 GTTTAGTGAC
Statistics
Matches: 88, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
30 26 0.30
31 1 0.01
32 2 0.02
34 59 0.67
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.63
Consensus pattern (34 bp):
AAATTTTATTTCTTTGTGTAAATCATTTTTCTTT
Found at i:20668102 original size:30 final size:30
Alignment explanation
Indices: 20668036--20668130 Score: 120
Period size: 30 Copynumber: 3.0 Consensus size: 30
20668026 TTTGTAAATC
*
20668036 ATTTTTCTTTAAATTTTATTTCTTTGTGTAAATA
1 ATTTTTCTTTAAATTTTATTTATTTGTG----TA
20668070 ATTTTTCTTTAAATTTTATTTATTTGTGTA
1 ATTTTTCTTTAAATTTTATTTATTTGTGTA
*
20668100 ATTTCTCTTTAAATTTTA-TTATTTTGTGTA
1 ATTTTTCTTTAAATTTTATTTA-TTTGTGTA
20668130 A
1 A
20668131 ATCATTTTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
29 3 0.05
30 28 0.48
34 27 0.47
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (30 bp):
ATTTTTCTTTAAATTTTATTTATTTGTGTA
Found at i:20670972 original size:43 final size:42
Alignment explanation
Indices: 20670787--20671051 Score: 146
Period size: 43 Copynumber: 6.2 Consensus size: 42
20670777 AAGTTTATAT
* * * * *
20670787 TCTTAAGCGGCGTTTGTGAAAAAAGTGTCGCTAAAGGTC-TGT
1 TCTTTAGC-GCGTTTATGAAAAAAGCGCCGCTAAAGGTCATGG
* * * * ***
20670829 TATATAGCGGTGTTTATAAAAAAAAGTAACGCTAAAGGTCATGG
1 TCTTTAGC-GCGTTTAT-GAAAAAAGCGCCGCTAAAGGTCATGG
* * * *
20670873 TTTTTAGCGACGTTTCTGAAAAAAGCGCCGCTAAAGGTTATTG
1 TCTTTAGCG-CGTTTATGAAAAAAGCGCCGCTAAAGGTCATGG
*
20670916 TCTTTAGCGGCGTTTAT-AAAAAAGGCGTCGCTAAAGGTCATGG
1 TCTTTAGC-GCGTTTATGAAAAAA-GCGCCGCTAAAGGTCATGG
* * ** *
20670959 TCTTTAGCAGCG-TT-TGCAGGAAAAGCGCCGTTAAAGACCATGA
1 TCTTTAGC-GCGTTTATG-A-AAAAAGCGCCGCTAAAGGTCATGG
* * * *
20671002 CCTTTAGCG-GTATT-TGCAAAAAAAGCGCCTCTAAAAGACATGG
1 TCTTTAGCGCGT-TTATG--AAAAAAGCGCCGCTAAAGGTCATGG
20671045 TCTTTAG
1 TCTTTAG
20671052 TGGCTTTTTT
Statistics
Matches: 171, Mismatches: 41, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
41 2 0.01
42 21 0.12
43 129 0.75
44 19 0.11
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TCTTTAGCGCGTTTATGAAAAAAGCGCCGCTAAAGGTCATGG
Found at i:20673759 original size:42 final size:42
Alignment explanation
Indices: 20673647--20673968 Score: 436
Period size: 42 Copynumber: 7.7 Consensus size: 42
20673637 TCGTGGCTTG
*
20673647 CCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-GA
1 CCTCCACACCTGGGTCTCTAAGTGCAATGAAAAGTGAATGGA
* *
20673688 CCTCCACATCTGGGTTTCT-AGATGCAATGAAAAGTGAATGGA
1 CCTCCACACCTGGGTCTCTAAG-TGCAATGAAAAGTGAATGGA
* *
20673730 CCTCCACACCTGGGCCTCTAAGTGGAATGAAAAGTGAATGGA
1 CCTCCACACCTGGGTCTCTAAGTGCAATGAAAAGTGAATGGA
* * *
20673772 TCTCCACACCTCGGTCTCTAAATGCAATGAAAAGTGAATGGA
1 CCTCCACACCTGGGTCTCTAAGTGCAATGAAAAGTGAATGGA
* *
20673814 CCTCCACACCTAGGTCTCT-AGATGCAATAAAAAGTGAATGGA
1 CCTCCACACCTGGGTCTCTAAG-TGCAATGAAAAGTGAATGGA
* *
20673856 CCTCCACACCTGGGTCTCT-AGATGCAATGAAATGGGAATGGA
1 CCTCCACACCTGGGTCTCTAAG-TGCAATGAAAAGTGAATGGA
* * * *
20673898 CCTCCACACCTAGGTCTTTAAATGCAATGAAAAGTAAATGGA
1 CCTCCACACCTGGGTCTCTAAGTGCAATGAAAAGTGAATGGA
*
20673940 CCTCCACACCTGGGTCTCTAAATGCAATG
1 CCTCCACACCTGGGTCTCTAAGTGCAATG
20673969 GATGTTTTCC
Statistics
Matches: 248, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
40 1 0.00
41 35 0.14
42 209 0.84
43 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (42 bp):
CCTCCACACCTGGGTCTCTAAGTGCAATGAAAAGTGAATGGA
Found at i:20673820 original size:84 final size:84
Alignment explanation
Indices: 20673647--20673968 Score: 484
Period size: 84 Copynumber: 3.8 Consensus size: 84
20673637 TCGTGGCTTG
* * * *
20673647 CCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-GACCTCCACATCTGGGTTTCTAGAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAAT
20673711 GCAATGAAAAGTGAATGGA
66 GCAATGAAAAGTGAATGGA
* * * * * *
20673730 CCTCCACACCTGGGCCTCTAAGTGGAATGAAAAGTGAATGGATCTCCACACCTCGGTCTCTAAAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAAT
20673795 GCAATGAAAAGTGAATGGA
66 GCAATGAAAAGTGAATGGA
* * *
20673814 CCTCCACACCTAGGTCTCTAGATGCAATAAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAAT
* *
20673879 GCAATGAAATGGGAATGGA
66 GCAATGAAAAGTGAATGGA
* *
20673898 CCTCCACACCTAGGTCTTTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTAAAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAAT
20673963 GCAATG
66 GCAATG
20673969 GATGTTTTCC
Statistics
Matches: 214, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
83 36 0.17
84 178 0.83
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (84 bp):
CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAAT
GCAATGAAAAGTGAATGGA
Found at i:20673875 original size:126 final size:126
Alignment explanation
Indices: 20673647--20673967 Score: 493
Period size: 126 Copynumber: 2.6 Consensus size: 126
20673637 TCGTGGCTTG
* * *
20673647 CCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-GACCTCCACATCTGGGTTTCTAGAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGAT
* * *
20673711 GCAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTA-AGTGGAATGAAAAGTGAATGGA
66 GCAATAAAAAGTGAATGGACCTCCACACCTGGGCCTCTAGA-TGCAATGAAAAGGGAATGGA
* * *
20673772 TCTCCACACCTCGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAGAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGAT
* *
20673837 GCAATAAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGATGCAATGAAATGGGAATGGA
66 GCAATAAAAAGTGAATGGACCTCCACACCTGGGCCTCTAGATGCAATGAAAAGGGAATGGA
* * *
20673898 CCTCCACACCTAGGTCTTTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTAAAT
1 CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGAT
20673963 GCAAT
66 GCAAT
20673968 GGATGTTTTC
Statistics
Matches: 178, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
125 37 0.21
126 140 0.79
127 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (126 bp):
CCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGAT
GCAATAAAAAGTGAATGGACCTCCACACCTGGGCCTCTAGATGCAATGAAAAGGGAATGGA
Found at i:20674404 original size:24 final size:26
Alignment explanation
Indices: 20674367--20674430 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 26
20674357 TCTCTTGCTC
*
20674367 TCTCTTTATTTTTTGGTT-TCTTTTT-T
1 TCTCTTT-TCTTTT-GTTGTCTTTTTGT
*
20674393 TC-CTTTTCTTTTTTTGTCTTTTTGT
1 TCTCTTTTCTTTTGTTGTCTTTTTGT
*
20674418 TCTTTTTTCTTTT
1 TCTCTTTTCTTTT
20674431 TTCTTGACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
23 2 0.06
24 12 0.38
25 7 0.22
26 11 0.34
ACGTcount: A:0.02, C:0.14, G:0.06, T:0.78
Consensus pattern (26 bp):
TCTCTTTTCTTTTGTTGTCTTTTTGT
Found at i:20674404 original size:26 final size:26
Alignment explanation
Indices: 20674385--20674432 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20674375 TTTTTTGGTT
20674385 TCTTTTT-TTC-CTTTTCTTTTTTTG
1 TCTTTTTGTTCTCTTTTCTTTTTTTG
*
20674409 TCTTTTTGTTCTTTTTTCTTTTTT
1 TCTTTTTGTTCTCTTTTCTTTTTT
20674433 CTTGACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (26 bp):
TCTTTTTGTTCTCTTTTCTTTTTTTG
Found at i:20674431 original size:16 final size:15
Alignment explanation
Indices: 20674383--20674431 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
20674373 TATTTTTTGG
*
20674383 TTTC-TTTTTTTCCT
1 TTTCTTTTTTTTCTT
20674397 TTTCTTTTTTTGTCTT
1 TTTCTTTTTTT-TCTT
*
20674413 TTTGTTCTTTTTTCTT
1 TTTCTT-TTTTTTCTT
20674429 TTT
1 TTT
20674432 TCTTGACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 4 0.13
15 6 0.20
16 15 0.50
17 5 0.17
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (15 bp):
TTTCTTTTTTTTCTT
Found at i:20676437 original size:44 final size:43
Alignment explanation
Indices: 20676355--20676465 Score: 109
Period size: 44 Copynumber: 2.6 Consensus size: 43
20676345 TAACAGCAAT
* *
20676355 GGCTGAAT-AAATGGCACTATGTGTGCGATACCGATATAAGTTC
1 GGCT-AATGAAATGGCACTAAGTGTGCGATACCGATATAACTTC
* **
20676398 GGTTTAATGAAATGGCACTAAGTGTGCGATA-TTATTATAACTTC
1 GG-CTAATGAAATGGCACTAAGTGTGCGATACCGA-TATAACTTC
* * *
20676442 GGCTAATTAATTGGCCCTAAGTGT
1 GGCTAATGAAATGGCACTAAGTGT
20676466 TCGAGTTCAT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
43 24 0.43
44 32 0.57
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
GGCTAATGAAATGGCACTAAGTGTGCGATACCGATATAACTTC
Found at i:20692284 original size:43 final size:43
Alignment explanation
Indices: 20692228--20692374 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
20692218 ATGCCAACGT
*
20692228 CCCAGACGTGGTCTTACATGTAATTAAATATCGATGCCACTAC
1 CCCAGACGTGGTCTTACATGTAATTAAATATCGATGCCAATAC
* * * * **
20692271 CCCAGACAG-GGTCTTAAACGAAATCAAATA-CGATGCCAATGT
1 CCCAGAC-GTGGTCTTACATGTAATTAAATATCGATGCCAATAC
* * ***
20692313 CCCAGATGTGGTCTTACATGTAAAT-AATAAGTCGATGCCAACGT
1 CCCAGACGTGGTCTTACATGTAATTAAAT-A-TCGATGCCAATAC
*
20692357 CCCAGGCGTGGTCTTACA
1 CCCAGACGTGGTCTTACA
20692375 CGATAACACA
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 4 0.05
42 27 0.33
43 24 0.29
44 28 0.34
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (43 bp):
CCCAGACGTGGTCTTACATGTAATTAAATATCGATGCCAATAC
Found at i:20692318 original size:42 final size:42
Alignment explanation
Indices: 20692213--20692377 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 42
20692203 CAGAAAGCTC
* * * * * *
20692213 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTAAACGAAATCAA
* **
20692255 ATATCGATGCCACTACCCCAGACAG-GGTCTTAAACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGAC-GTGGTCTTAAACGAAATCAA
* * * *
20692298 ATACGATGCCAATGTCCCAGATGTGGTCTTACATGTAAATAATA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTAAACG-AAATCA-A
* * *
20692342 AGT-CGATGCCAACGTCCCAGGCGTGGTCTTACACGA
1 A-TACGATGCCAATGTCCCAGACGTGGTCTTAAACGA
20692378 TAACACATAT
Statistics
Matches: 97, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 37 0.38
44 31 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTAAACGAAATCAA
Found at i:20695223 original size:21 final size:21
Alignment explanation
Indices: 20695143--20695301 Score: 129
Period size: 21 Copynumber: 7.6 Consensus size: 21
20695133 AAGCTCGAAG
* * *
20695143 GCTAAACAGAAGCTTATGAGA
1 GCTAAACAGAAACTCATAAGA
* * *
20695164 GCTAAACAGAAGCTTATGAGA
1 GCTAAACAGAAACTCATAAGA
*
20695185 GCTAAACAGAAGCTCATAAGA
1 GCTAAACAGAAACTCATAAGA
* * *
20695206 GCTAAACGGAAACCCATAAGG
1 GCTAAACAGAAACTCATAAGA
* * * *
20695227 GTTAAACAGAAGCTCAAAATA
1 GCTAAACAGAAACTCATAAGA
* * *
20695248 GCTGAACGGAAACTCATATGA
1 GCTAAACAGAAACTCATAAGA
* * * *
20695269 GTTAAACAGAAGCTCGTGAGA
1 GCTAAACAGAAACTCATAAGA
20695290 GCTAAACAGAAA
1 GCTAAACAGAAA
20695302 GTAAACACAA
Statistics
Matches: 109, Mismatches: 29, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 109 1.00
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (21 bp):
GCTAAACAGAAACTCATAAGA
Found at i:20695233 original size:42 final size:42
Alignment explanation
Indices: 20695145--20695301 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 42
20695135 GCTCGAAGGC
* * * * * *
20695145 TAAACAGAAGCTTATGAGAGCTAAACAGAAGCTTATGAGAGC
1 TAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
* * *
20695187 TAAACAGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGT
1 TAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
* * * * *
20695229 TAAACAGAAGCTCAAAATAGCTGAACGGAAACTCATATGAGT
1 TAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
* *
20695271 TAAACAGAAGCTCGTGAGAGCTAAACAGAAA
1 TAAACAGAAGCTCATAAGAGCTAAACAGAAA
20695302 GTAAACACAA
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 94 1.00
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (42 bp):
TAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
Found at i:20695296 original size:63 final size:63
Alignment explanation
Indices: 20695143--20695300 Score: 163
Period size: 63 Copynumber: 2.5 Consensus size: 63
20695133 AAGCTCGAAG
* * ** *
20695143 GCTAAACAGAAGCTTATGAGAGCTAAACAGAAGCTTATGAGAGCTAAACAGAAGCTCATAAGA
1 GCTAAACAGAAGCTCATGAGAGCTAAACAGAAGCTCAAAAGAGCTAAACAGAAACTCATAAGA
* * * * * * * * * *
20695206 GCTAAACGGAAACCCATAAGGGTTAAACAGAAGCTCAAAATAGCTGAACGGAAACTCATATGA
1 GCTAAACAGAAGCTCATGAGAGCTAAACAGAAGCTCAAAAGAGCTAAACAGAAACTCATAAGA
* *
20695269 GTTAAACAGAAGCTCGTGAGAGCTAAACAGAA
1 GCTAAACAGAAGCTCATGAGAGCTAAACAGAA
20695301 AGTAAACACA
Statistics
Matches: 72, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
63 72 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.16
Consensus pattern (63 bp):
GCTAAACAGAAGCTCATGAGAGCTAAACAGAAGCTCAAAAGAGCTAAACAGAAACTCATAAGA
Found at i:20695794 original size:23 final size:23
Alignment explanation
Indices: 20695764--20695812 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
20695754 AACTAATTAA
20695764 TCTTATCAAATTAACTAATATTT
1 TCTTATCAAATTAACTAATATTT
*
20695787 TCTTATCAAATTAACTAATTTTT
1 TCTTATCAAATTAACTAATATTT
20695810 TCT
1 TCT
20695813 CAATTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (23 bp):
TCTTATCAAATTAACTAATATTT
Found at i:20695819 original size:19 final size:21
Alignment explanation
Indices: 20695752--20695825 Score: 82
Period size: 23 Copynumber: 3.5 Consensus size: 21
20695742 AATTTAGTCC
*
20695752 TTAACTAATTAATCTTATCAAA
1 TTAACTAATT-TTCTTATCAAA
20695774 TTAACTAATATTTTCTTATCAAA
1 TTAACT-A-ATTTTCTTATCAAA
*
20695797 TTAACTAATTTT-TTCTC-AA
1 TTAACTAATTTTCTTATCAAA
20695816 TTAA-TAATTT
1 TTAACTAATTT
20695826 ATCTAAATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.12
19 6 0.12
20 4 0.08
21 5 0.10
22 7 0.15
23 17 0.35
24 3 0.06
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAACTAATTTTCTTATCAAA
Found at i:20697268 original size:6 final size:6
Alignment explanation
Indices: 20697259--20697302 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
20697249 AAAAAAAAAA
* * * *
20697259 CCTCTT CCTCTA CCTTTT TCTCTT CCTCTT CCTCTT CTTCTT CC
1 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CC
20697303 AACTTCTATG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.52
Consensus pattern (6 bp):
CCTCTT
Found at i:20697500 original size:149 final size:150
Alignment explanation
Indices: 20697338--20697680 Score: 455
Period size: 149 Copynumber: 2.3 Consensus size: 150
20697328 CACTAGAGAG
* *
20697338 AATCTAAACTTTCTCATTTAAAAAAAATACTATTTTTCTTAAAT-ATTAAAGTTTTTATTTTGAA
1 AATCTAAACTTTCTCATTTAAAAAAAATACTATTTTTCTTAAATGATTAAAGCTTTTACTTTGAA
* *
20697402 GTAGTT-AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATAACTATAAAAA
66 ATAGTTGAAAAAAATC-AAACCTTGTTTTAAAATTTTAAACTTTCCTTTAAAATAAC--TAAAAA
20697466 AAATAGAT-TTTTATTT-TTCAA
128 AAATAGATATTTTATTTCTTCAA
* * *
20697487 AATCTAAACTTTCTCCTCTATAAAAAATACTATTTTTCTT-AATGATTAAAGCTTTTACTTTGAA
1 AATCTAAACTTTCTCATTTAAAAAAAATACTATTTTTCTTAAATGATTAAAGCTTTTACTTTGAA
* *
20697551 ATAGTTGAAAAAAATCAAACCTTGTTTTACAATTTTAAACTTTCCTTTAAAATAACTAAAAAATA
66 ATAGTTGAAAAAAATCAAACCTTGTTTTAAAATTTTAAACTTTCCTTTAAAATAACTAAAAAAAA
* *
20697616 TATATATTTTATTTCTTTAA
131 TAGATATTTTATTTCTTCAA
* * * *
20697636 ATTCT-AACTTTCTCTTTTTTTAAAAAAAACACTATTTTTCCTAAA
1 AATCTAAACTTTCTC---ATTTAAAAAAAATACTATTTTTCTTAAA
20697681 ATCAAGCTTT
Statistics
Matches: 169, Mismatches: 17, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
147 12 0.07
148 20 0.12
149 106 0.63
150 9 0.05
151 20 0.12
152 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (150 bp):
AATCTAAACTTTCTCATTTAAAAAAAATACTATTTTTCTTAAATGATTAAAGCTTTTACTTTGAA
ATAGTTGAAAAAAATCAAACCTTGTTTTAAAATTTTAAACTTTCCTTTAAAATAACTAAAAAAAA
TAGATATTTTATTTCTTCAA
Found at i:20710928 original size:29 final size:29
Alignment explanation
Indices: 20710870--20710998 Score: 217
Period size: 29 Copynumber: 4.5 Consensus size: 29
20710860 ATAGTAAGTC
*
20710870 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
20710898 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
20710927 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
20710956 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
20710984 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
20710999 ATGCAATTTA
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
28 39 0.41
29 57 0.59
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:20710977 original size:57 final size:58
Alignment explanation
Indices: 20710870--20710998 Score: 217
Period size: 57 Copynumber: 2.3 Consensus size: 58
20710860 ATAGTAAGTC
*
20710870 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
20710927 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
20710984 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
20710999 ATGCAATTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
57 40 0.59
58 28 0.41
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:20711019 original size:57 final size:58
Alignment explanation
Indices: 20710870--20711026 Score: 194
Period size: 57 Copynumber: 2.7 Consensus size: 58
20710860 ATAGTAAGTC
* * *
20710870 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACCCACACACTTAGTGCTTACATAATCAAACT
* * *
20710927 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACCCACACACTTAGTGCTTACATAATCAAACT
* * * *
20710984 TGCACACTTAGTGCTATGCA-ATTTAAACCCACACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACCCACACACTTAGTGC
20711027 CAATCTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 59 0.66
58 31 0.34
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACCCACACACTTAGTGCTTACATAATCAAACT
Found at i:20718840 original size:29 final size:29
Alignment explanation
Indices: 20718781--20718937 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
20718771 ATAGTAAGTC
* *
20718781 CGCACACTTAGTG-TTATATAATTAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
20718809 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
20718838 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
20718867 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
20718895 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
20718924 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20718938 CAATCTCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
28 39 0.34
29 75 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:20718888 original size:57 final size:58
Alignment explanation
Indices: 20718781--20718937 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
20718771 ATAGTAAGTC
*
20718781 CGCACACTTAGTG-TTATATAATTAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATTAAACTCGCACACTTAGTGCTTACATAATCAAACT
* *
20718838 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATTAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * *
20718895 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATTAAACTCGCACACTTAGTGC
20718938 CAATCTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 60 0.67
58 30 0.33
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATTAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:20722967 original size:42 final size:43
Alignment explanation
Indices: 20722897--20722998 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
20722887 TCCCGGACGT
* * **
20722897 GGTCTTACATGTAAATCAATATCGATGCCTCTATCCCAGACAG
1 GGTCTTACACGTAAATCAATATCAATGCCGATATCCCAGACAG
* *
20722940 GGTCTTACACG-AAATCAGATA-CAATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCAATGCCGATATCCCAGACAG
*
20722982 GGTCTTATACGTAAATC
1 GGTCTTACACGTAAATC
20722999 TCAATCGAGG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.64
43 18 0.36
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCAATGCCGATATCCCAGACAG
Found at i:20730235 original size:42 final size:41
Alignment explanation
Indices: 20730158--20730297 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 41
20730148 TCCCGGACGT
* * * *
20730158 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGAAATTCAATA-CGATGCC-GTGTCCCAGACAC
*
20730201 GGTCTTACACGAAATT-AGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATTCA-ATACGATGCCG-TGTCCCAGACAC
* *
20730243 GGTCTTATACGTAAATCTCAAT-CGAGGCCTGTGTCCCAGACAC
1 GGTCTTACACG-AAAT-TCAATACGATGCC-GTGTCCCAGACAC
20730286 GGTCTTACACGA
1 GGTCTTACACGA
20730298 TATCTCAGAC
Statistics
Matches: 83, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
42 30 0.36
43 48 0.58
44 4 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAAATTCAATACGATGCCGTGTCCCAGACAC
Found at i:20736772 original size:7 final size:7
Alignment explanation
Indices: 20736762--20736786 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
20736752 TACATCAAAG
20736762 TCATGTT
1 TCATGTT
20736769 TCATGTT
1 TCATGTT
20736776 TCATGTT
1 TCATGTT
20736783 TCAT
1 TCAT
20736787 AAATCTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.12, T:0.56
Consensus pattern (7 bp):
TCATGTT
Found at i:20737220 original size:40 final size:39
Alignment explanation
Indices: 20737116--20737223 Score: 101
Period size: 41 Copynumber: 2.7 Consensus size: 39
20737106 ATCTCGGTAT
* *
20737116 CGCACACTTAGTGCCTCAAATAGCCGAAGCTATTACAAATC
1 CGCACACTTAGTGCC-AAAATAGTCGAAGCTATTACAAA-C
* ** **
20737157 CGCACACTTAGTGCTATTTATAGTCGAAGCTATTTTGAAA-
1 CGCACACTTAGTGCCA-AAATAGTCGAAGCTA-TTACAAAC
20737197 CGCACACTTAGTGCCAAACATAGTCGA
1 CGCACACTTAGTGCCAAA-ATAGTCGA
20737224 CTTAACATCG
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
40 23 0.43
41 26 0.48
42 5 0.09
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (39 bp):
CGCACACTTAGTGCCAAAATAGTCGAAGCTATTACAAAC
Found at i:20744764 original size:67 final size:67
Alignment explanation
Indices: 20744656--20744791 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
20744646 GTCACAAACT
20744656 CCTTTCATAACAATAATTAGTAAAATCAAACAAAATTTCCACCTACATATATTTATTATTATTTG
1 CCTTTCATAACAATAATTAGTAAAATCAAACAAAATTTCCACCTACATATATTTATTATTATTTG
20744721 AG
66 AG
20744723 CCTTTCATAACAATAATTAGTAAAATCAAACAAAATTTCCACCTACATATATTTATTATTATTTG
1 CCTTTCATAACAATAATTAGTAAAATCAAACAAAATTTCCACCTACATATATTTATTATTATTTG
20744788 AG
66 AG
20744790 CC
1 CC
20744792 AAATCCAATC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (67 bp):
CCTTTCATAACAATAATTAGTAAAATCAAACAAAATTTCCACCTACATATATTTATTATTATTTG
AG
Found at i:20745847 original size:22 final size:24
Alignment explanation
Indices: 20745822--20745870 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
20745812 TAAGCTTATC
20745822 TAAAATACAT-TTTAAATT-TTTT
1 TAAAATACATGTTTAAATTATTTT
* *
20745844 TAAAATATATGTTTATATTATTTT
1 TAAAATACATGTTTAAATTATTTT
20745868 TAA
1 TAA
20745871 TTTTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
23 7 0.30
24 7 0.30
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TAAAATACATGTTTAAATTATTTT
Found at i:20745867 original size:23 final size:22
Alignment explanation
Indices: 20745822--20745867 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
20745812 TAAGCTTATC
*
20745822 TAAAATACATTTTAAATTTTTT
1 TAAAATACATTTTAAATTATTT
* *
20745844 TAAAATATATGTTTATATTATTT
1 TAAAATACAT-TTTAAATTATTT
20745867 T
1 T
20745868 TAATTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TAAAATACATTTTAAATTATTT
Found at i:20745877 original size:17 final size:16
Alignment explanation
Indices: 20745855--20745900 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
20745845 AAAATATATG
20745855 TTTATATTATTTTTAAT
1 TTTATA-TATTTTTAAT
**
20745872 TTTATAT-TTAATAAT
1 TTTATATATTTTTAAT
20745887 TTTATATATTTTTA
1 TTTATATATTTTTA
20745901 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 13 0.54
16 5 0.21
17 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATATATTTTTAAT
Found at i:20745881 original size:23 final size:24
Alignment explanation
Indices: 20745855--20745919 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 24
20745845 AAAATATATG
*
20745855 TTTATATTATTTT-TA-ATTTTATA
1 TTTATATAATTTTATATATTTT-TA
20745878 TTTA-ATAATTTTATATATTTTTA
1 TTTATATAATTTTATATATTTTTA
*
20745901 TTTATTAAAATTTTATATA
1 TTTA-TATAATTTTATATA
20745920 CAATCATCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.19
23 12 0.33
24 5 0.14
25 12 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTATATAATTTTATATATTTTTA
Found at i:20745899 original size:25 final size:25
Alignment explanation
Indices: 20745871--20745919 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
20745861 TTATTTTTAA
20745871 TTTTATAT-TTAATAATTTTATATAT
1 TTTTATATATTAA-AATTTTATATAT
*
20745896 TTTTATTTATTAAAATTTTATATA
1 TTTTATATATTAAAATTTTATATA
20745920 CAATCATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTATATATTAAAATTTTATATAT
Found at i:20747828 original size:53 final size:54
Alignment explanation
Indices: 20747733--20747900 Score: 159
Period size: 53 Copynumber: 3.2 Consensus size: 54
20747723 CCCGAATATA
* * * *
20747733 GTCTTATACGGG-AGCACTTATCACATT-T-CTCTAATGCTATAGCCCAGCTATG
1 GTCTTATACGGGAATCATTTATCAC-TTGTAATCTAATGCCATAGCCCAGCTATG
* *
20747785 GTCTTATAC-GG-ATCGCTTGTATCACTT-TAATCTAAAGCCATAGCCCAGCTATG
1 GTCTTATACGGGAATC-ATT-TATCACTTGTAATCTAATGCCATAGCCCAGCTATG
* ** ** *
20747838 ATCTTATACGGGAATCATTTATCACTTGTTTTCCGATGCCATAGCCCAGCCATG
1 GTCTTATACGGGAATCATTTATCACTTGTAATCTAATGCCATAGCCCAGCTATG
20747892 GTCTTATAC
1 GTCTTATAC
20747901 AGATATTGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
51 4 0.04
52 13 0.14
53 43 0.45
54 32 0.34
55 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (54 bp):
GTCTTATACGGGAATCATTTATCACTTGTAATCTAATGCCATAGCCCAGCTATG
Found at i:20762548 original size:53 final size:52
Alignment explanation
Indices: 20762450--20762625 Score: 153
Period size: 53 Copynumber: 3.3 Consensus size: 52
20762440 ATATCCAGGA
* * * * * * * *
20762450 TATGGTCTTACACGGGAGCACTTATCACAT-TTCTCCGATGTCATAGCCTAGC
1 TATGGTCTTATAC-GGATCATTTATCACTTGTTTTCCAATGCCATAGCCTAAC
* * *
20762502 TATGGTCTTATACGGATCGCTTGTATCACTT-TAATTT-GAA-GCCATAGCCCAAC
1 TATGGTCTTATACGGATC-ATT-TATCACTTGT--TTTCCAATGCCATAGCCTAAC
*
20762555 TATGGTTTTATACGGGAATCATTTATCACTTGTTTTCCAATGCCATAGCCTAAC
1 TATGGTCTTATAC-GG-ATCATTTATCACTTGTTTTCCAATGCCATAGCCTAAC
20762609 TATGGTCTTATACGGAT
1 TATGGTCTTATACGGAT
20762626 ATCGCTTATC
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
51 4 0.04
52 18 0.18
53 42 0.42
54 30 0.30
55 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (52 bp):
TATGGTCTTATACGGATCATTTATCACTTGTTTTCCAATGCCATAGCCTAAC
Found at i:20762635 original size:54 final size:51
Alignment explanation
Indices: 20762491--20762642 Score: 155
Period size: 54 Copynumber: 2.9 Consensus size: 51
20762481 TCTCCGATGT
* *
20762491 CATAGCCTAGCTATGGTCTTATACGG-ATCGCTTGTATCACTT-TAATTTGAAGC
1 CATAGCCTAACTATGGTCTTATACGGAATCGC-T-TATCACTTGT--TTTCAAGC
* * **
20762544 CATAGCCCAACTATGGTTTTATACGGGAATCATTTATCACTTGTTTTCCAATGC
1 CATAGCCTAACTATGGTCTTATAC-GGAATCGCTTATCACTTGTTTT-CAA-GC
*
20762598 CATAGCCTAACTATGGTCTTATACGGATATCGCTTATCAGTTGTT
1 CATAGCCTAACTATGGTCTTATACGGA-ATCGCTTATCACTTGTT
20762643 GCCATGGTCC
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
52 3 0.04
53 34 0.41
54 42 0.51
55 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (51 bp):
CATAGCCTAACTATGGTCTTATACGGAATCGCTTATCACTTGTTTTCAAGC
Found at i:20769888 original size:25 final size:25
Alignment explanation
Indices: 20769862--20769915 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
20769852 GATCTTTTAA
20769862 TTAATAAAATATTATATTAATATAAT
1 TTAATAAAATATT-TATTAATATAAT
* *
20769888 TTAATTAGATATTTATT-A-ATAAT
1 TTAATAAAATATTTATTAATATAAT
20769911 TTAAT
1 TTAAT
20769916 TATAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 1 0.04
25 4 0.15
26 11 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATAAAATATTTATTAATATAAT
Found at i:20769927 original size:23 final size:23
Alignment explanation
Indices: 20769883--20769927 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
20769873 TTATATTAAT
* **
20769883 ATAATTTAATTAGATATTTATTA
1 ATAATTTAATTAGAAAAATATTA
*
20769906 ATAATTTAATTATAAAAATATT
1 ATAATTTAATTAGAAAAATATT
20769928 GATATAAAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATAATTTAATTAGAAAAATATTA
Found at i:20771357 original size:30 final size:30
Alignment explanation
Indices: 20771323--20771384 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
20771313 AGGCCGTATA
*
20771323 TCACACACGGCTTAGACACACGCTCGTGTG
1 TCACACACGGCTTAGACACACACTCGTGTG
20771353 TCACACACGGCTTAGACACACACTCGTGTG
1 TCACACACGGCTTAGACACACACTCGTGTG
20771383 TC
1 TC
20771385 TACCCGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (30 bp):
TCACACACGGCTTAGACACACACTCGTGTG
Found at i:20778931 original size:21 final size:21
Alignment explanation
Indices: 20778907--20778946 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
20778897 AACTCTATTT
20778907 ATTTTTACT-ATTTCAATTCTA
1 ATTTTT-CTAATTTCAATTCTA
*
20778928 ATTTTTGTAATTTCAATTC
1 ATTTTTCTAATTTCAATTC
20778947 ATTCCAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTTTTCTAATTTCAATTCTA
Found at i:20784363 original size:28 final size:28
Alignment explanation
Indices: 20784310--20784378 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
20784300 TAGTAAGTTT
*
20784310 GCACACTTAGTGCTTAATAATCAAACTC
1 GCACACTTAGTGCTTAACAATCAAACTC
* * *
20784338 GCATACTTAGTGC-TATACAATTAAACTT
1 GCACACTTAGTGCTTA-ACAATCAAACTC
20784366 GCACACTTAGTGC
1 GCACACTTAGTGC
20784379 CAATCTCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCTTAACAATCAAACTC
Found at i:20795768 original size:21 final size:20
Alignment explanation
Indices: 20795730--20795847 Score: 114
Period size: 20 Copynumber: 5.8 Consensus size: 20
20795720 GCAACCCAAT
*
20795730 TTTTATT-TTTTTTATTTTTA
1 TTTTATTATTTATT-TTTTTA
* *
20795750 TTTTGTTATTTATTGTTTTA
1 TTTTATTATTTATTTTTTTA
**
20795770 TTTTATTATTTATTACTTTA
1 TTTTATTATTTATTTTTTTA
* *
20795790 TTTTATTTTATTATTTTATTA
1 TTTTATTAT-TTATTTTTTTA
*
20795811 TTTTATTATTTTATTTTATTA
1 TTTTATTA-TTTATTTTTTTA
20795832 -TTTATTACTTTATTTT
1 TTTTATTA-TTTATTTT
20795848 GTTTTGATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
20 51 0.61
21 31 0.37
22 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTATTATTTATTTTTTTA
Found at i:20795776 original size:13 final size:13
Alignment explanation
Indices: 20795732--20795847 Score: 93
Period size: 13 Copynumber: 8.9 Consensus size: 13
20795722 AACCCAATTT
20795732 TTATTTT-TTTTA
1 TTATTTTATTTTA
*
20795744 -T-TTTTATTTTG
1 TTATTTTATTTTA
20795755 TTA-TTTATTGTT-
1 TTATTTTATT-TTA
20795767 TTATTTTATTATTTA
1 TTATTTTA-T-TTTA
*
20795782 TTACTTTATTTTA
1 TTATTTTATTTTA
20795795 TT-TTATTATTTTA
1 TTATT-TTATTTTA
20795808 TTATTTTATTATT-
1 TTATTTTATT-TTA
20795821 TTATTTTATTATTTA
1 TTATTTTA-T-TTTA
*
20795836 TTACTTTATTTT
1 TTATTTTATTTT
20795848 GTTTTGATAT
Statistics
Matches: 86, Mismatches: 4, Indels: 27
0.74 0.03 0.23
Matches are distributed among these distances:
10 4 0.05
11 5 0.06
12 11 0.13
13 38 0.44
14 12 0.14
15 16 0.19
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.76
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:20795823 original size:8 final size:8
Alignment explanation
Indices: 20795730--20795845 Score: 97
Period size: 8 Copynumber: 14.9 Consensus size: 8
20795720 GCAACCCAAT
20795730 TTTTATT-
1 TTTTATTA
20795737 TTTT-TTA
1 TTTTATTA
20795744 TTTTTATT-
1 -TTTTATTA
20795752 TTGTTATTTA
1 TT-TTA-TTA
20795762 TTGTT-TTA
1 TT-TTATTA
20795770 TTTTATTA
1 TTTTATTA
20795778 -TTTATTA
1 TTTTATTA
*
20795785 CTTTATTTTA
1 -TTT-TATTA
20795795 TTTTATTA
1 TTTTATTA
20795803 TTTTATTA
1 TTTTATTA
20795811 TTTTATTA
1 TTTTATTA
20795819 --TT-TTA
1 TTTTATTA
20795824 TTTTATTA
1 TTTTATTA
20795832 -TTTATTA
1 TTTTATTA
*
20795839 CTTTATT
1 TTTTATT
20795846 TTGTTTTGAT
Statistics
Matches: 93, Mismatches: 2, Indels: 27
0.76 0.02 0.22
Matches are distributed among these distances:
5 3 0.03
6 4 0.04
7 24 0.26
8 44 0.47
9 9 0.10
10 9 0.10
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.76
Consensus pattern (8 bp):
TTTTATTA
Found at i:20795827 original size:54 final size:52
Alignment explanation
Indices: 20795739--20795852 Score: 176
Period size: 54 Copynumber: 2.2 Consensus size: 52
20795729 TTTTTATTTT
* *
20795739 TTTTA-TTTTTATTTTGTTATTTATTGTTTTATTTTATTATTTATTACTTTA
1 TTTTATTTTTTATTTTATTATTTATTATTTTATTTTATTATTTATTACTTTA
20795790 TTTTATTTTATTATTTTATTATTTTATTATTTTATTTTATTATTTATTACTTTA
1 TTTTATTTT-TTATTTTATTA-TTTATTATTTTATTTTATTATTTATTACTTTA
*
20795844 TTTTGTTTT
1 TTTTATTTT
20795853 GATATTAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 5 0.09
52 3 0.05
53 10 0.18
54 39 0.68
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (52 bp):
TTTTATTTTTTATTTTATTATTTATTATTTTATTTTATTATTTATTACTTTA
Found at i:20810957 original size:19 final size:19
Alignment explanation
Indices: 20810933--20810970 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20810923 ATACAGAGCC
*
20810933 ACACGCCCGTGTGCTCTAG
1 ACACGCCCGTGTCCTCTAG
20810952 ACACGCCCGTGTCCTCTAG
1 ACACGCCCGTGTCCTCTAG
20810971 CCGTGTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.24, T:0.21
Consensus pattern (19 bp):
ACACGCCCGTGTCCTCTAG
Found at i:20816789 original size:23 final size:23
Alignment explanation
Indices: 20816760--20816808 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
20816750 TGAGTGATTA
20816760 AATTTAATATAAATAAAAGGTAT
1 AATTTAATATAAATAAAAGGTAT
*
20816783 AATTTAATATAAATAAATGGTAT
1 AATTTAATATAAATAAAAGGTAT
20816806 AAT
1 AAT
20816809 GACTATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (23 bp):
AATTTAATATAAATAAAAGGTAT
Found at i:20819057 original size:22 final size:21
Alignment explanation
Indices: 20819022--20819097 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
20819012 AAAGGATATC
* *
20819022 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
20819043 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
20819066 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
20819085 TGC-AATCATATCT
1 TACAAATCATATCT
20819098 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:20819082 original size:19 final size:19
Alignment explanation
Indices: 20819058--20819145 Score: 146
Period size: 19 Copynumber: 4.8 Consensus size: 19
20819048 AATCATATCT
20819058 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
20819077 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
20819095 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
20819112 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
20819131 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
20819146 AATTGAAGAT
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:20819114 original size:35 final size:37
Alignment explanation
Indices: 20819058--20819145 Score: 135
Period size: 35 Copynumber: 2.4 Consensus size: 37
20819048 AATCATATCT
*
20819058 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
20819095 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
20819131 TCTAAGATTGCATAT
1 TCTAAGATTG-ATAT
20819146 AATTGAAGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.32
37 10 0.21
38 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:20819127 original size:14 final size:15
Alignment explanation
Indices: 20819072--20819127 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
20819062 AGATTGCATA
20819072 TCATATCTAAGATTG
1 TCATATCTAAGATTG
20819087 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
20819105 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
20819122 -CATATC
1 TCATATC
20819128 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:20819562 original size:45 final size:45
Alignment explanation
Indices: 20819503--20819756 Score: 334
Period size: 44 Copynumber: 5.7 Consensus size: 45
20819493 AGGCGATATC
** *
20819503 TGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATA
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
* * * *
20819548 TGTTATCTTCGATCTGCTCCCCGTCTAATATAGAGACGACAAATT
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
*
20819593 TGCT-TCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATT
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
* *
20819637 TACT-TCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATT
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
* * * *
20819681 TACT-TCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATC
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
* * *
20819725 TGTTATCTCCAATTTGCTCCCCGTCTAATACA
1 TGCTATCTTCAATCTGCTCCCCGTCTAATACA
20819757 AAGGTGCCAA
Statistics
Matches: 190, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 123 0.65
45 67 0.35
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (45 bp):
TGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATT
Found at i:20819930 original size:78 final size:78
Alignment explanation
Indices: 20819801--20820329 Score: 727
Period size: 78 Copynumber: 6.8 Consensus size: 78
20819791 ATGTAAACAC
* * *
20819801 ATGAAGGCCAGATCTGCTATGTCTTCGATCTGCTCCCTGTTTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
20819866 TGAATCTGCTTCA
66 TGGATCTGCTTCA
* * *
20819879 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGTTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
20819943 TTGGATCTGTTTCA
65 TTGGATCTGCTTCA
* * * *
20819957 ATGAAGGTTAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
20820022 TGGATTTGCTTCA
66 TGGATCTGCTTCA
* * * * *
20820035 ACGAAGGTTATATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
20820100 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
20820113 ATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAATATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
20820178 TGGATCTGATTCA
66 TGGATCTGCTTCA
* * * *
20820191 ATGAAGGTCAAATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
20820256 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * ** *
20820269 ATGAAGGTCAGATATGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCTAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
20820330 TGTTTCTTCG
Statistics
Matches: 400, Mismatches: 49, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
77 1 0.00
78 397 0.99
79 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:20820481 original size:44 final size:44
Alignment explanation
Indices: 20820432--20820767 Score: 462
Period size: 44 Copynumber: 7.6 Consensus size: 44
20820422 CTTCAGTTTT
*
20820432 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCAATCTG
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
*
20820476 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCAATCTG
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
* * *
20820520 CCCTCTGACAATACAGAGATACCAAATCTGCTATCTTTGATCTG
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
*
20820564 CTC-CTTGACAATACAGAGATGTCAAATCTGCTATCTTCGATCTG
1 CTCTC-TGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
* * * *
20820608 CCCTCTAATAATACAAAGACT-CCAAATCTGCTATCTTCGATCTG
1 CTCTCTGACAATACAGAGA-TGCCAAATCTGCTATCTTCGATCTG
* *
20820652 CTCCCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTG
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
* * * * *
20820696 CCCTCTGACAATATAGAGACGCCAAATCTTCTATCTTCGATCTA
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
*
20820740 CT-TCCTGACAATACAGAGACGCCAAATC
1 CTCT-CTGACAATACAGAGATGCCAAATC
20820768 ATCTTAGATC
Statistics
Matches: 261, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
43 2 0.01
44 257 0.98
45 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (44 bp):
CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
Found at i:20825274 original size:27 final size:27
Alignment explanation
Indices: 20825144--20825274 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
20825134 ATTACCAAAG
* * *
20825144 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
20825171 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
20825198 TACCATCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
20825225 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
20825252 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
20825275 AAAATACCCT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:20825282 original size:27 final size:27
Alignment explanation
Indices: 20825252--20825472 Score: 159
Period size: 27 Copynumber: 8.2 Consensus size: 27
20825242 ATTACTGTTT
*
20825252 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
20825279 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *
20825306 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * * * *
20825333 TACCCTAG-TCTATAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
20825359 TACCACTAG-TTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
* ** *
20825386 TACCACT-GGTTTATGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
* **
20825413 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
20825440 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
20825467 TACCCT
1 TACCCT
20825473 TGACTTTCTA
Statistics
Matches: 158, Mismatches: 26, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
26 25 0.16
27 132 0.84
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:20825283 original size:54 final size:54
Alignment explanation
Indices: 20825171--20825302 Score: 149
Period size: 54 Copynumber: 2.4 Consensus size: 54
20825161 ATTACCGTTT
* * * ****
20825171 TACCCTCGATTTACAGAATTACCATTTTACCATCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
** *
20825225 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
*
20825279 TACCCTT-AGTTTACAAAATTACCA
1 TACCCTTGA-TTTACAGAATTACCA
20825303 AAATACCCTC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
Found at i:20825299 original size:81 final size:81
Alignment explanation
Indices: 20825152--20825300 Score: 183
Period size: 81 Copynumber: 1.8 Consensus size: 81
20825142 AGTACCCTCA
* * *** * * *
20825152 ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCATCGATTTATAGAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATAGATTTACAAAAT
20825217 TACTGTTTTACCCTTG
66 TACTGTTTTACCCTTG
* * *
20825233 ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTACAAAA
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATA-CCATAGATTTACAAAA
20825297 TTAC
65 TTAC
20825301 CAAAATACCC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 52 0.93
82 4 0.07
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATAGATTTACAAAAT
TACTGTTTTACCCTTG
Found at i:20825310 original size:54 final size:53
Alignment explanation
Indices: 20825252--20825555 Score: 211
Period size: 54 Copynumber: 5.6 Consensus size: 53
20825242 ATTACTGTTT
* *
20825252 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCC-TAGTTTACAAAATTACCAAAA
* * * * *
20825306 TACCCTCGA-TCAGTAAAATTACCAAAATACCCTAGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTAGTTTACAAAATTACCAAAA
* * * ** *
20825359 TACCACTAG-TTTGTAAAATTACCAAAATACCACTGGTTTATGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACC-CTAGTTTACAAAATTACCAAAA
* * *
20825413 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATA-CCCTAG-TTTACAAAATTACCA-AAA
* * *** * * **
20825467 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAATACC-CTAGTTTACAAAATTACCAAAA
* * * * * *
20825523 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTCGATTTATAAAATTACCAAAATACCCT
20825556 TGTAGGATGA
Statistics
Matches: 196, Mismatches: 41, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
53 46 0.23
54 102 0.52
55 12 0.06
56 35 0.18
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTAGTTTACAAAATTACCAAAA
Found at i:20825310 original size:81 final size:81
Alignment explanation
Indices: 20825131--20825312 Score: 177
Period size: 81 Copynumber: 2.2 Consensus size: 81
20825121 CTCAAATTGT
* * * *
20825131 AAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCAT
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
** * *
20825196 TTTACCATCGATTTAT
66 AATACCATAGATTTAC
* ***** ** * *
20825212 AGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
*
20825277 AATACCCTTAG-TTTAC
66 AATA-CCATAGATTTAC
20825293 AAAATTACCAAAATACCCTC
1 AAAATTACCAAAATACCCTC
20825313 GATCAGTAAA
Statistics
Matches: 75, Mismatches: 25, Indels: 2
0.74 0.25 0.02
Matches are distributed among these distances:
81 71 0.95
82 4 0.05
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
AATACCATAGATTTAC
Found at i:20825405 original size:80 final size:80
Alignment explanation
Indices: 20825266--20825472 Score: 215
Period size: 80 Copynumber: 2.6 Consensus size: 80
20825256 CTCGATTTAC
20825266 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
20825331 AATACCCTAGTCTAT
66 AATACCCTAGTCTAT
* ** * * * *
20825346 AAAATTGCTAAAATACCAC-TAGTTTGTAAAATTACCAAAATACCACTGGTTTA-TGAAATTACC
1 AAAATTACTAAAATACC-CTTAGTTTACAAAATTACCAAAATACC-CTCGATCAGTAAAATTACC
* * * *
20825409 GAAATACCCTCAATTTGT
64 AAAATACCCT-AGTCTAT
* * *
20825427 AAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAATACCCT
1 AAAATTACTAAAATACCCTTAG-TTTACAAAATTACCA-AAATACCCT
20825473 TGACTTTCTA
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
80 63 0.60
81 42 0.40
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCTAGTCTAT
Found at i:20825652 original size:27 final size:27
Alignment explanation
Indices: 20825588--20825652 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
20825578 ACCTCTATTA
*
20825588 GGTAAAAAGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCATAAAGCCCCTGTAG
*
20825615 GGTAAAGTGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCATAAAGCCCCTGTAG
20825642 GGTAAAATGAC
1 GGTAAAATGAC
20825653 GAATATGTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCATAAAGCCCCTGTAG
Found at i:20826542 original size:25 final size:26
Alignment explanation
Indices: 20826455--20826602 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
20826445 GAGGAAGTGC
20826455 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
20826481 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
20826507 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
20826533 -AAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
20826558 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
20826583 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
20826603 ATTAAAGAGG
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 55 0.50
26 56 0.50
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:20826561 original size:51 final size:52
Alignment explanation
Indices: 20826455--20826602 Score: 221
Period size: 51 Copynumber: 2.9 Consensus size: 52
20826445 GAGGAAGTGC
20826455 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* * **
20826507 AAAAGGGCTTATGTCCCAGTTTATTG-AAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
**
20826558 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTT
20826603 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
50 21 0.24
51 41 0.47
52 25 0.29
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:20826806 original size:42 final size:42
Alignment explanation
Indices: 20826747--20826838 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
20826737 TAGTCTCCCC
* ** *
20826747 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
20826789 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
20826831 AAATGGGC
1 AAATGGGC
20826839 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:20826906 original size:31 final size:31
Alignment explanation
Indices: 20826862--20826938 Score: 138
Period size: 31 Copynumber: 2.5 Consensus size: 31
20826852 CGTTTACAGT
20826862 AAAA-GCTTCGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAATGATATGATTTATG
*
20826892 AAAAGGCTTTGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAATGATATGATTTATG
20826923 AAAAGGCTTCGGCCCA
1 AAAAGGCTTCGGCCCA
20826939 GTAACCGTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 4 0.09
31 40 0.91
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAATGATATGATTTATG
Found at i:20830991 original size:22 final size:21
Alignment explanation
Indices: 20830956--20831031 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
20830946 AAAGGATATC
* *
20830956 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
20830977 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
20831000 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
20831019 TGC-AATCATATCT
1 TACAAATCATATCT
20831032 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:20831016 original size:19 final size:19
Alignment explanation
Indices: 20830992--20831082 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
20830982 AATCATATCT
20830992 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
20831011 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
20831029 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
20831046 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
20831065 TCTAATATTGCATATCAT
1 TCTAAGATTGCATATCAT
20831083 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:20831048 original size:35 final size:37
Alignment explanation
Indices: 20830992--20831082 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 37
20830982 AATCATATCT
*
20830992 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
20831029 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
*
20831065 TCTAATATTGCATATCAT
1 TCTAAGATTG-ATATCAT
20831083 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
35 19 0.39
36 14 0.29
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:20831061 original size:14 final size:15
Alignment explanation
Indices: 20831006--20831061 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
20830996 AGATTGCATA
20831006 TCATATCTAAGATTG
1 TCATATCTAAGATTG
20831021 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
20831039 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
20831056 -CATATC
1 TCATATC
20831062 ACATCTAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:20832076 original size:41 final size:41
Alignment explanation
Indices: 20832019--20832116 Score: 178
Period size: 41 Copynumber: 2.4 Consensus size: 41
20832009 CGAACCCAAT
*
20832019 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCCTTGTA
1 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
*
20832060 ATGAAACGCCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
1 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
20832101 ATGAAACACCTAAGCT
1 ATGAAACACCTAAGCT
20832117 GGTTAACATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
Found at i:20835121 original size:19 final size:19
Alignment explanation
Indices: 20835094--20835131 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
20835084 ATTACAATTC
20835094 CATAAAT-AATATATACCTT
1 CATAAATAAATAT-TACCTT
*
20835113 CATATATAAATATTACCTT
1 CATAAATAAATATTACCTT
20835132 GGCCGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (19 bp):
CATAAATAAATATTACCTT
Found at i:20839617 original size:39 final size:39
Alignment explanation
Indices: 20839540--20839618 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
20839530 ATAAAGATGT
* * *
20839540 TTTGAGTATTGTGATATATGATTATATGCTATGTGATTA
1 TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
* * *
20839579 TTTGAGTATTGTAATATATGCTTGTATGTTAGGCGATTA
1 TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
20839618 T
1 T
20839619 ATGTGTAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.48
Consensus pattern (39 bp):
TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
Found at i:20843428 original size:11 final size:11
Alignment explanation
Indices: 20843395--20843419 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
20843385 TGTCTATGGC
20843395 AAAAAAAAAGA
1 AAAAAAAAAGA
20843406 AAAAAAAAAGA
1 AAAAAAAAAGA
20843417 AAA
1 AAA
20843420 GAAATAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:20852847 original size:12 final size:12
Alignment explanation
Indices: 20852830--20852870 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
20852820 TGGGGGTAGG
20852830 ATCTGATTATGT
1 ATCTGATTATGT
*
20852842 ATCTGAATATGT
1 ATCTGATTATGT
* *
20852854 ATTTGATTATGC
1 ATCTGATTATGT
20852866 ATCTG
1 ATCTG
20852871 TATCTGATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (12 bp):
ATCTGATTATGT
Found at i:20868654 original size:13 final size:12
Alignment explanation
Indices: 20868622--20868676 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
20868612 TGAAATATTT
20868622 TAATTTAAAATA
1 TAATTTAAAATA
20868634 TTTAATTTCAAAATA
1 --TAATTT-AAAATA
20868649 TAATTTAAAATA
1 TAATTTAAAATA
20868661 T--TTT--AATA
1 TAATTTAAAATA
20868669 TAATTTAA
1 TAATTTAA
20868677 TATAAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
8 5 0.14
10 6 0.17
12 7 0.19
13 6 0.17
14 6 0.17
15 6 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATTTAAAATA
Found at i:20868667 original size:15 final size:14
Alignment explanation
Indices: 20868609--20868663 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 14
20868599 AAAATAAGAT
*
20868609 ATTTGAAATATTTTA
1 ATTTAAAATA-TTTA
20868624 ATTTAAAATATTTA
1 ATTTAAAATATTTA
20868638 ATTTCAAAATA--TA
1 ATTT-AAAATATTTA
20868651 ATTTAAAATATTT
1 ATTTAAAATATTT
20868664 TAATATAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
12 6 0.17
13 6 0.17
14 9 0.25
15 15 0.42
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTTAAAATATTTA
Found at i:20868675 original size:10 final size:10
Alignment explanation
Indices: 20868645--20868681 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
20868635 TTAATTTCAA
20868645 AATATAATTT
1 AATATAATTT
* *
20868655 AAAATATTTT
1 AATATAATTT
20868665 AATATAATTT
1 AATATAATTT
20868675 AATATAA
1 AATATAA
20868682 AAATAATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATATAATTT
Found at i:20868789 original size:55 final size:59
Alignment explanation
Indices: 20868683--20868802 Score: 167
Period size: 55 Copynumber: 2.1 Consensus size: 59
20868673 TTAATATAAA
* * * *
20868683 AATAATTATATTAAACATTTTATTAAATTATATATTATTTTTATTAAATTATATTTAAT
1 AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
*
20868742 AATAATTAAATTAAA-ATATGATTAAA-T-TAT-TTATTATTATTAAATTATTTTTAAT
1 AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
20868797 AATAAT
1 AATAAT
20868803 CCTATTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 29 0.52
56 3 0.05
57 1 0.02
58 9 0.16
59 14 0.25
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (59 bp):
AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
Found at i:20869002 original size:16 final size:15
Alignment explanation
Indices: 20868976--20869032 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 15
20868966 ACAGTTGAAT
* *
20868976 TATTGATTACAACTT
1 TATTCATTACAACTC
*
20868991 TATTCTATTACAGCTC
1 TATTC-ATTACAACTC
20869007 TATTACATTACAACTC
1 TATT-CATTACAACTC
20869023 TATTCCATTA
1 TATT-CATTA
20869033 AAACAAACCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 4 0.11
16 30 0.86
17 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.44
Consensus pattern (15 bp):
TATTCATTACAACTC
Found at i:20869865 original size:21 final size:20
Alignment explanation
Indices: 20869827--20869866 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
20869817 TTAATTCTCT
20869827 TAAATATTTTTTTAAATTAA
1 TAAATATTTTTTTAAATTAA
20869847 TAAAT-TTTTATTATAAATTA
1 TAAATATTTT-TT-TAAATTA
20869867 GATCAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAAATATTTTTTTAAATTAA
Found at i:20872276 original size:18 final size:18
Alignment explanation
Indices: 20872244--20872294 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
20872234 ATACCCATTT
*
20872244 CTCTCCATC-TTTCTTTC
1 CTCTCTATCTTTTCTTTC
20872261 CTCTCTATCTTTTCTTTC
1 CTCTCTATCTTTTCTTTC
*
20872279 CTCTCTTATCTCTTCT
1 CTCTC-TATCTTTTCT
20872295 GTGCCCTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.27
18 13 0.43
19 9 0.30
ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57
Consensus pattern (18 bp):
CTCTCTATCTTTTCTTTC
Found at i:20879082 original size:13 final size:13
Alignment explanation
Indices: 20879064--20879089 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20879054 AATGAATTAA
20879064 CTGATTTGATCTC
1 CTGATTTGATCTC
20879077 CTGATTTGATCTC
1 CTGATTTGATCTC
20879090 TAAGAAGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CTGATTTGATCTC
Found at i:20892428 original size:94 final size:94
Alignment explanation
Indices: 20892239--20892502 Score: 304
Period size: 94 Copynumber: 2.8 Consensus size: 94
20892229 TTTGTACGCC
* * *
20892239 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAGTGTATGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCTAGTGTAAGACCATGTCAGG
* ** *
20892304 GACATGGCATCGGCGTTGAGGTGAGGGCT
66 GACATGGCATCGACGTTGAGACGAGAGCT
20892333 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGT-GCTAGTGTAAGA-CATGTCAG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-TAGCTAGTGTAAGACCATGTCAG
*
20892396 GGACAT-GCATCAGCACGTAT-ATACGAGAGCT
65 GGACATGGCATC-G-ACGT-TGAGACGAGAGCT
* * ** *
20892427 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAGCCAGTGTAAGACCATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGATAGCTAGTGTAAGACCATGTC
20892492 TA-GGACATGGC
63 -AGGGACATGGC
20892503 GTCGGTAACT
Statistics
Matches: 146, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
92 5 0.03
93 14 0.10
94 70 0.48
95 16 0.11
96 10 0.07
97 16 0.11
98 12 0.08
99 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCTAGTGTAAGACCATGTCAGG
GACATGGCATCGACGTTGAGACGAGAGCT
Found at i:20892455 original size:142 final size:142
Alignment explanation
Indices: 20892239--20892500 Score: 368
Period size: 142 Copynumber: 1.8 Consensus size: 142
20892229 TTTGTACGCC
* * * * *
20892239 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAGTGTATGACCATGTCTGG
1 AGTGTAAGACATGTCAGGGACATGCATCAGCCACATTACGAGAGCTAGTGTAAGACCATGTCTGG
* * * * * *
20892304 GACATGGCATCGGCGTTG-AGGTGAGGGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCAC
66 GACATGGCATCGGCCTCGAAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATGCATCAGCCAC
20892367 ATTATGAGTGCT
131 ATTATGAGTGCT
20892379 AGTGTAAGACATGTCAGGGACATGCATCAG-CACGTATATACGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCAGGGACATGCATCAGCCAC--AT-TACGAGAGCTAGTGTAAGACCATGTC
*
20892443 TGGGACATGGCATCGGCCTCGAAGATGATAGCCAGTGTAAGACCATGTCTAGGACATG
63 TGGGACATGGCATCGGCCTCGAAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATG
20892501 GCGTCGGTAA
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
139 3 0.03
140 28 0.27
141 2 0.02
142 42 0.40
143 16 0.15
144 14 0.13
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACATGTCAGGGACATGCATCAGCCACATTACGAGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTCGAAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATGCATCAGCCAC
ATTATGAGTGCT
Found at i:20892502 original size:49 final size:47
Alignment explanation
Indices: 20892239--20892500 Score: 246
Period size: 46 Copynumber: 5.5 Consensus size: 47
20892229 TTTGTACGCC
*
20892239 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAATATGATAGCT
* *** ** **
20892285 AGTGTATGACCATGTCTGGGACATGGCATCGGCGTTG-AGGTGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAATATGATAGCT
* *
20892333 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAATATGA-TAGCT
* * * *
20892379 AGTGTAAGACATGTCAGGGACATGCATCAG-CACGTATATACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACG-A-ATATGATAGCT
* * *
20892427 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAATATGATAGCT
*
20892476 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
20892501 GCGTCGGTAA
Statistics
Matches: 174, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.02
46 50 0.29
47 29 0.17
48 39 0.22
49 43 0.25
50 7 0.04
51 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAATATGATAGCT
Found at i:20894914 original size:50 final size:50
Alignment explanation
Indices: 20894849--20894948 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
20894839 AATTAAGTAC
*
20894849 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATTAATTGAA
1 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
* *
20894899 GATCATAAATTGACGGATAATACCATAGTTGGACTATGGCATCAATTGAA
1 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
20894949 TGATGTACTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (50 bp):
GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
Found at i:20898198 original size:7 final size:7
Alignment explanation
Indices: 20898186--20898210 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
20898176 TGGAAACAAC
20898186 TAAATTT
1 TAAATTT
20898193 TAAATTT
1 TAAATTT
20898200 TAAATTT
1 TAAATTT
20898207 TAAA
1 TAAA
20898211 AACCTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:20902228 original size:46 final size:46
Alignment explanation
Indices: 20902161--20902336 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
20902151 TATTTGGGCA
*
20902161 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
20902207 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
20902252 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
20902300 CCCGAGCTCGTTGAGTTGAGTCCGATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20902337 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 60 0.57
47 26 0.25
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:20903426 original size:14 final size:14
Alignment explanation
Indices: 20903392--20903420 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
20903382 TTTACTAATT
20903392 TTCTAGACAAAAAA
1 TTCTAGACAAAAAA
20903406 TTCTAGA-AAAAAA
1 TTCTAGACAAAAAA
20903419 TT
1 TT
20903421 AGTAGATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (14 bp):
TTCTAGACAAAAAA
Found at i:20908094 original size:46 final size:46
Alignment explanation
Indices: 20908044--20908219 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
20908034 TATTTGGGCA
20908044 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * ** *
20908090 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA--A--CG
* *
20908137 TTCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
20908183 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
20908220 GCTGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.59
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:20908151 original size:93 final size:93
Alignment explanation
Indices: 20908040--20908212 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
20908030 TGGATATTTG
*
20908040 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20908105 TTGAGTCCGAGTTCGTGAGATGTAATTA
66 TTGAGTCCGAGTTCGTGAGATGTAATTA
* * *
20908133 GGCATTCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20908198 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
20908213 CTTATGGGCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAATTA
Found at i:20912201 original size:53 final size:53
Alignment explanation
Indices: 20912136--20912236 Score: 157
Period size: 53 Copynumber: 1.9 Consensus size: 53
20912126 ATGGCATCAT
*
20912136 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATTATATGGAAAGAAGCCC
1 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGAAGCCC
** * *
20912189 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGA
1 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGA
20912237 TTTAAGAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (53 bp):
ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGAAGCCC
Found at i:20912445 original size:57 final size:56
Alignment explanation
Indices: 20912353--20912534 Score: 159
Period size: 57 Copynumber: 3.2 Consensus size: 56
20912343 AAGAGAAAAA
* * * * *
20912353 AAGCCTTTGTGGC-AATCTCTATTTAAGGACACCTTTATAGTAAAATTATAGAAGGGT
1 AAGCCTTTGTGGCGAA-C-CTATTAAAGGAAACCTTTATAGCAAAACTATAGAAAGGT
* * * * * *
20912410 AAGCCTTCGTGGCGAACCTATTAAAGGATAGCCTTTGTGGCAAAACTCTGGAAAGGT
1 AAGCCTTTGTGGCGAACCTATTAAAGGA-AACCTTTATAGCAAAACTATAGAAAGGT
* * * * * * *
20912467 AAGCCTTTGTGGTGAACCTGTTAAAGGAAAACCTTTATGGAAAAACTCTATAAAAGT
1 AAGCCTTTGTGGCGAACCTATTAAAGG-AAACCTTTATAGCAAAACTATAGAAAGGT
20912524 AAGCCTTTGTG
1 AAGCCTTTGTG
20912535 AAAAACCTCT
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
56 10 0.10
57 89 0.87
58 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (56 bp):
AAGCCTTTGTGGCGAACCTATTAAAGGAAACCTTTATAGCAAAACTATAGAAAGGT
Found at i:20912449 original size:28 final size:29
Alignment explanation
Indices: 20912404--20912502 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 29
20912394 AAAATTATAG
* *
20912404 AAGGGTAAGCCTTCGTGGCGAACCTATTA
1 AAGGATAAGCCTTTGTGGCGAACCTATTA
* * * *
20912433 AAGGAT-AGCCTTTGTGGCAAAACTCTGGA
1 AAGGATAAGCCTTTGTGGCGAACCTAT-TA
* *
20912462 AAGG-TAAGCCTTTGTGGTGAACCTGTTA
1 AAGGATAAGCCTTTGTGGCGAACCTATTA
*
20912490 AAGGA-AAACCTTT
1 AAGGATAAGCCTTT
20912503 ATGGAAAAAC
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
28 29 0.53
29 26 0.47
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (29 bp):
AAGGATAAGCCTTTGTGGCGAACCTATTA
Found at i:20912542 original size:57 final size:57
Alignment explanation
Indices: 20912424--20912566 Score: 153
Period size: 57 Copynumber: 2.5 Consensus size: 57
20912414 CTTCGTGGCG
* * * * * * ***
20912424 AACCTATTAAAGGATAGCCTTTGTGGCAAAACTCTGGAAAGGTAAGCCTTTGTGGTG
1 AACCTATTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAAGTAAGCCTTTGTGAAA
* *
20912481 AACCTGTTAAAGGAAAACCTTTATGGAAAAACTCTATAAAAGTAAGCCTTTGTGAAA
1 AACCTATTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAAGTAAGCCTTTGTGAAA
* * *
20912538 AACCTCTTAAA-GAACACTTTTATGGAAAA
1 AACCTATTAAAGGAAAACCTTTATGGAAAA
20912567 TCTGTGAAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
56 16 0.22
57 56 0.78
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (57 bp):
AACCTATTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAAGTAAGCCTTTGTGAAA
Found at i:20912548 original size:28 final size:29
Alignment explanation
Indices: 20912431--20912549 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 29
20912421 GCGAACCTAT
* *
20912431 TAAAGG-ATAGCCTTTGTGGCAAAACTCTG
1 TAAAGGTA-AGCCTTTGTGGAAAAACTCTA
* ** * *
20912460 GAAAGGTAAGCCTTTGTGGTGAACCTGT-
1 TAAAGGTAAGCCTTTGTGGAAAAACTCTA
* * *
20912488 TAAAGGAAAACCTTTATGGAAAAACTCTA
1 TAAAGGTAAGCCTTTGTGGAAAAACTCTA
*
20912517 TAAAAGTAAGCCTTTGT-GAAAAACCTCT-
1 TAAAGGTAAGCCTTTGTGGAAAAA-CTCTA
20912545 TAAAG
1 TAAAG
20912550 AACACTTTTA
Statistics
Matches: 69, Mismatches: 18, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
28 30 0.43
29 38 0.55
30 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (29 bp):
TAAAGGTAAGCCTTTGTGGAAAAACTCTA
Found at i:20916038 original size:23 final size:23
Alignment explanation
Indices: 20916010--20916060 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
20916000 GCACACGGGC
20916010 GTGTGCATTGCCTCTACAT-AGGT
1 GTGTGCATTGCCTCTACATGA-GT
20916033 GTGTGCATTGCCTCTACATGAGT
1 GTGTGCATTGCCTCTACATGAGT
20916056 GTGTG
1 GTGTG
20916061 AGGCTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.16, C:0.20, G:0.29, T:0.35
Consensus pattern (23 bp):
GTGTGCATTGCCTCTACATGAGT
Found at i:20918991 original size:26 final size:26
Alignment explanation
Indices: 20918935--20918985 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20918925 TTGGCATTTA
20918935 TTTTTGTCATTGATATTAGCTGCAGG
1 TTTTTGTCATTGATATTAGCTGCAGG
*
20918961 TTTTTGTCATTGGTATTAGCTGCAG
1 TTTTTGTCATTGATATTAGCTGCAG
20918986 TATTTTACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.47
Consensus pattern (26 bp):
TTTTTGTCATTGATATTAGCTGCAGG
Found at i:20923501 original size:120 final size:120
Alignment explanation
Indices: 20923304--20924286 Score: 1867
Period size: 120 Copynumber: 8.2 Consensus size: 120
20923294 TTTTCAAGTT
*
20923304 ATATATTTAATGATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20923369 TAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
20923424 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20923489 TAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
20923544 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20923609 TAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
20923664 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
20923729 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
20923784 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20923849 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
20923904 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
20923969 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
20924024 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20924089 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
* *
20924144 TTATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
20924209 TAATATAATAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
20924264 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
20924287 TAAATATGAT
Statistics
Matches: 853, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 853 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
Found at i:20923903 original size:18 final size:17
Alignment explanation
Indices: 20923875--20923909 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
20923865 ATTATTAAGA
*
20923875 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
20923892 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
20923910 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:20924143 original size:18 final size:17
Alignment explanation
Indices: 20924115--20924149 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
20924105 ATTATTAAGA
20924115 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
20924132 ATTTTAATTAAATTATAT
1 ATTTT-ATTAAATTATAT
20924150 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:20924530 original size:16 final size:16
Alignment explanation
Indices: 20924505--20924573 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
20924495 GATTAGCTAT
*
20924505 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
20924521 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
20924538 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
20924554 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
20924570 TACA
1 TACA
20924574 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 33 0.67
17 16 0.33
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:20924548 original size:33 final size:32
Alignment explanation
Indices: 20924505--20924573 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
20924495 GATTAGCTAT
20924505 TACACATCTAATCCAATACACCTCTAATCCCAA
1 TACACATCTAATCCAATACACCTCTAAT-CCAA
* *
20924538 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACATCTAATCCAATACACCTCTAATCCAA
20924570 TACA
1 TACA
20924574 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACATCTAATCCAATACACCTCTAATCCAA
Found at i:20928761 original size:27 final size:27
Alignment explanation
Indices: 20928714--20928802 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
20928704 TGGATAAGTT
*
20928714 GTAGAATTAT-AAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
20928740 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * * *
20928767 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
20928794 GTAAAATTA
1 GTAGAATTA
20928803 CCATTTTGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
26 10 0.19
27 44 0.81
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:20929572 original size:27 final size:26
Alignment explanation
Indices: 20929534--20929593 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
20929524 CCACATATAT
* *
20929534 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
20929560 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
20929587 ATATCTG
1 ATATCTG
20929594 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:20931790 original size:42 final size:42
Alignment explanation
Indices: 20931721--20932016 Score: 362
Period size: 42 Copynumber: 7.0 Consensus size: 42
20931711 TGACATTAGG
* *
20931721 TATACTGAGATTACGTGTAAGAGCATATCTGGGATATGGCATC
1 TATA-TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
*
20931764 TATATGAGATTTCGTGTAAGACCATATCTGCGATATGGCATC
1 TATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* * * *
20931806 GATATGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCAT-
1 TATATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATC
* * * *
20931848 TGATACGAGATTACATGTAAGACCATATCTGGGATATGACATC
1 T-ATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
*
20931891 TATATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATC
1 TATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* * *
20931933 GATATGAGATTTCGTGTAACACCATAGT-TGGGCTATTGGCATC
1 TATATGAGATTTCGTGTAAGACCATA-TCTGGGATA-TGGCATC
* * * *
20931976 GATACGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
20932017 TGGTACAGTA
Statistics
Matches: 217, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
42 142 0.65
43 75 0.35
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
Found at i:20931868 original size:85 final size:84
Alignment explanation
Indices: 20931726--20932018 Score: 374
Period size: 85 Copynumber: 3.5 Consensus size: 84
20931716 TTAGGTATAC
*
20931726 TGAGATTACGTGTAAGAGCATATCTGGGATATGGCATCT-ATATGAGATTTCGTGTAAGACCATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT-TGATATGAGATTTCGTGTAAGACCATA
*
20931790 TCTGCGATATGGCATCGATA
65 TCTGGGATATGGCATCGATA
* * * * * * *
20931810 TGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATTGATACGAGATTACATGTAAGACCATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATTGATATGAGATTTCGTGTAAGACCATA
* *
20931875 TCTGGGATATGACATCTATA
65 TCTGGGATATGGCATCGATA
** * *
20931895 TGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCGTGTAACACCATAG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCGTGTAAGACCATA-
*
20931960 T-TGGGCTATTGGCATCGATA
65 TCTGGGATA-TGGCATCGATA
* *
20931980 CGAGATTACATGTAAGACCATATCTGGGATATGGCATTG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTG
20932019 GTACAGTACT
Statistics
Matches: 177, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
84 61 0.34
85 116 0.66
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCGTGTAAGACCATAT
CTGGGATATGGCATCGATA
Found at i:20931957 original size:127 final size:127
Alignment explanation
Indices: 20931722--20932012 Score: 492
Period size: 127 Copynumber: 2.3 Consensus size: 127
20931712 GACATTAGGT
* * *
20931722 ATACTGAGATTACGTGTAAGAGCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGACC
1 ATAC-GAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGACC
* *
20931787 ATATCTGCGATATGGCATCGATATGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATTG
65 ATATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTAGGCTATTGGCATCG
*
20931850 ATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTTGTGTAAGACCA
1 ATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGACCA
* * *
20931915 TATCTGGGATATGGCATCGATATGAGATTTCGTGTAACACCATAGTTGGGCTATTGGCATCG
66 TATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTAGGCTATTGGCATCG
20931977 ATACGAGATTACATGTAAGACCATATCTGGGATATG
1 ATACGAGATTACATGTAAGACCATATCTGGGATATG
20932013 GCATTGGTAC
Statistics
Matches: 154, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
127 150 0.97
128 4 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (127 bp):
ATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGACCA
TATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTAGGCTATTGGCATCG
Done.