Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 73 of 332
Found at i:22599936 original size:81 final size:81
Alignment explanation
Indices: 22599751--22599946 Score: 236
Period size: 81 Copynumber: 2.4 Consensus size: 81
22599741 CTTATAGTGA
**
22599751 AAAATGACCGTAATGCCCCTGTAAAGTAAAATGACCATAATACCCCTATAGGATAAAATGACTAT
1 AAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTATAGGATAAAATGACTAT
* *
22599816 GATGCCCCTGTAAGGT
66 AATGCCCCTATAAGGT
* * * * * * * *
22599832 AAAATGACCGTAATTCCCCTGTAGGGTAAAATGACCGTGATTCCCTTGTAAGG-TAAGATGGCCT
1 AAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTAT-AGGATAAAAT-GACT
*
22599896 -TAATGCCCCTATAGGGT
64 ATAATGCCCCTATAAGGT
22599913 AAAATGACCGTAATGCCCCTGTAGGGT-AAATGAC
1 AAAATGACCGTAATGCCCCTGTAGGGTAAAATGAC
22599947 AATTATGCCT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 7 0.07
81 86 0.87
82 6 0.06
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (81 bp):
AAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTATAGGATAAAATGACTAT
AATGCCCCTATAAGGT
Found at i:22603501 original size:40 final size:40
Alignment explanation
Indices: 22603300--22603487 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
22603290 TATTTGGATG
* *
22603300 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22603340 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
22603379 ATATTCGGGCCAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
22603419 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
22603459 ATAACCGGGCTAAGTCTTGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
22603488 AGCAAGTAGC
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 33 0.25
40 98 0.75
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22603501 original size:80 final size:80
Alignment explanation
Indices: 22603300--22603519 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
22603290 TATTTGGATG
* *
22603300 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGG
1 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
22603362 CATTTGTGCGAGCTACT
64 CATTTGTGCGAGCTACT
** * * *
22603379 ATATTCGGGCCAAGTCCTGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
*
22603443 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGCTACT
* * * *
22603459 ATAACCGGGCTAAGTCTTGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAG
1 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAG
22603520 ATACTTTGGT
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
79 58 0.48
80 62 0.52
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGCTACT
Found at i:22609103 original size:49 final size:48
Alignment explanation
Indices: 22608955--22609129 Score: 147
Period size: 49 Copynumber: 3.6 Consensus size: 48
22608945 TAAGATGCCA
* * * **
22608955 ATGCCAGGTCCCAGACATGGTTTTACACTGGCTAACA-C-ATTAAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATT-GGGTCG
* * * * * * * * *
22609003 ATGTCATGTCCCAGATAAGTCTTACACTGACTTTTATTTATCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATTG-GGTCG
*
22609052 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATTGG-GTCG
* *
22609101 ATGTCATGTCCCAAACAGGTCTTACACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTG
22609130 ACACACAGCA
Statistics
Matches: 98, Mismatches: 25, Indels: 7
0.75 0.19 0.05
Matches are distributed among these distances:
47 13 0.13
48 15 0.15
49 70 0.71
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATTGGGTCG
Found at i:22609123 original size:98 final size:97
Alignment explanation
Indices: 22608955--22609131 Score: 239
Period size: 98 Copynumber: 1.8 Consensus size: 97
22608945 TAAGATGCCA
* * *
22608955 ATGCCAGGTCCCAGACATGGTTTTACACTGGCTAACACATTAAAGTCGATGTCATGTCCCAGATA
1 ATGCCAGGTCCCAGACATGGTCTTACACTGGCTAACACATTAAAGTCGATGTCATGTCCCAAACA
22609020 AGTCTTACACTGACTTTTATTTATCGAGGCCG
66 AGTCTTACACTGACTTTTATTTATCGAGGCCG
* ** ***
22609052 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATTGGTGTCGATGTCATGTCCCAAA
1 ATGCCAGGTCCCAGACATGGTCTTACACTGGCTAACA-C-ATTAAAGTCGATGTCATGTCCCAAA
*
22609116 CAGGTCTTACACTGAC
64 CAAGTCTTACACTGAC
22609132 ACACAGCAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
96 16 0.24
97 17 0.25
98 35 0.51
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (97 bp):
ATGCCAGGTCCCAGACATGGTCTTACACTGGCTAACACATTAAAGTCGATGTCATGTCCCAAACA
AGTCTTACACTGACTTTTATTTATCGAGGCCG
Found at i:22609270 original size:94 final size:92
Alignment explanation
Indices: 22609149--22609317 Score: 223
Period size: 92 Copynumber: 1.8 Consensus size: 92
22609139 AAGCTAATGC
* * * *
22609149 CATGTCCTAGACAGGTCTTACACTAGCTTGT-ATATCTCGAGGCCGATGCATGTCCTAGACATAT
1 CATGTCCCAGACAGGTCTTACACTAGCTT-TCATA-AT-GAGGCCAATGCATATCCTAGACATAT
22609213 CTTACACTAGCTCTCGTCTCAATGTCGATG
63 CTTACACTAGCTCTCGTCTCAATGTCGATG
* * * *
22609243 CATGTCCCAGACATGTCTTACATTAGCTTTCATAATGTGGCCAATGCATATCCTAGACATGTCTT
1 CATGTCCCAGACAGGTCTTACACTAGCTTTCATAATGAGGCCAATGCATATCCTAGACATATCTT
*
22609308 ACACTGGCTC
66 ACACTAGCTC
22609318 ACATACCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 34 0.52
93 2 0.03
94 29 0.45
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (92 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTTCATAATGAGGCCAATGCATATCCTAGACATATCTT
ACACTAGCTCTCGTCTCAATGTCGATG
Found at i:22618733 original size:44 final size:44
Alignment explanation
Indices: 22618681--22618782 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
22618671 TGAGTTATCG
**
22618681 TGTAAGACCACGTCTGGGATGTTGGCAT-GAACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATTTACA
22618725 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
22618769 TGTAAGACCACGTC
1 TGTAAGACCACGTC
22618783 AATTTGGTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
Found at i:22623253 original size:93 final size:93
Alignment explanation
Indices: 22623140--22623311 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22623130 CGCCCATAAG
*
22623140 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
22623205 ACGAGTTCGGATGCCTAGTTACATCTTA
66 ACGAGCTCGGATGCCTAGTTACATCTTA
*
22623233 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22623298 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
22623312 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTTA
Found at i:22623308 original size:46 final size:46
Alignment explanation
Indices: 22623133--22623308 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22623123 TGTAACCCGC
*
22623133 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
22623179 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
22623229 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
22623272 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
22623309 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:22623761 original size:30 final size:30
Alignment explanation
Indices: 22623726--22623786 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22623716 TCCTTAACTC
*
22623726 AAATTTTGGCAAAATTACAATTTTGTCCCT
1 AAATTTTGGCAAAATTACAATTTTGCCCCT
* * * *
22623756 AAATTTTTGCATATTTACATTTTTGCCCCT
1 AAATTTTGGCAAAATTACAATTTTGCCCCT
22623786 A
1 A
22623787 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (30 bp):
AAATTTTGGCAAAATTACAATTTTGCCCCT
Found at i:22629320 original size:39 final size:40
Alignment explanation
Indices: 22629275--22629497 Score: 231
Period size: 39 Copynumber: 5.7 Consensus size: 40
22629265 GCTCCTCGTT
* * * *
22629275 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
22629315 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
22629354 CGAATGCCTTCGGGACTTAACCCGGATTT-GTACCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
22629393 CAAAGGCCTTCGGGGCTTAACCCGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
22629432 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22629473 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22629498 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 96 0.62
40 46 0.30
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22629378 original size:79 final size:78
Alignment explanation
Indices: 22629275--22629497 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 78
22629265 GCTCCTCGTT
* * *
22629275 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
22629340 TTTAATAACTCGCA
66 TTT-ATAACTCGCA
* * * * * *
22629354 CGAATGCCTTCGGGACTTAACCCGGATTT-GTACCTCGCACAAAGGCCTTCGGGGCTTAACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
22629418 ATTTGTATCTCGCA
65 ATTTATAACTCGCA
* * * * * *
22629432 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
22629496 GA
64 GA
22629498 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.34
79 68 0.58
80 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
TTTATAACTCGCA
Found at i:22629506 original size:41 final size:41
Alignment explanation
Indices: 22629429--22629506 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
22629419 TTTGTATCTC
* * *
22629429 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22629470 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
22629507 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22633882 original size:46 final size:46
Alignment explanation
Indices: 22633815--22633989 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
22633805 TGTAACCCGC
*
22633815 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
*
22633861 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACAT
* * * * *
22633911 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
* *
22633954 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
22633990 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
Found at i:22633981 original size:93 final size:93
Alignment explanation
Indices: 22633822--22633993 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
22633812 CGCCCATAAG
* *
22633822 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
22633887 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
22633915 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
22633980 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
22633994 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22640915 original size:20 final size:20
Alignment explanation
Indices: 22640887--22640924 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22640877 CTAGGAAATA
22640887 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
22640907 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
22640925 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:22641163 original size:50 final size:50
Alignment explanation
Indices: 22641083--22641274 Score: 244
Period size: 50 Copynumber: 3.9 Consensus size: 50
22641073 CCGTGAGTAA
* * * *
22641083 TGAGATCCCATATAAGACCATGTTTAGGACAAGGCATTGGCATCGATATG
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
*
22641133 TGAGATCCCATGTAAGACCATGTCTGGGACAGGGCATTGGCATCGATATG
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
22641183 TGAAATCCCATGTAGGACCATGTTTGGGTCATGGCATTGGCATCGGTATG
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * *
22641233 T--GATCCCATGTAAGACCATTTCTGAGATATGGCCTTGGCATC
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
22641275 TTATTATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
48 33 0.27
50 91 0.73
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (50 bp):
TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:22642491 original size:21 final size:21
Alignment explanation
Indices: 22642454--22642493 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22642444 AATCATTAAA
*
22642454 TTGATGTTATGATATGTGTCT
1 TTGATGTTATGAAATGTGTCT
22642475 TTGATGTGTAT-AAATGTGT
1 TTGATGT-TATGAAATGTGT
22642494 AAGGGATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGATGTTATGAAATGTGTCT
Found at i:22645412 original size:16 final size:16
Alignment explanation
Indices: 22645391--22645424 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
22645381 CCTATGACCA
22645391 AAGCTGGAAAAGATTC
1 AAGCTGGAAAAGATTC
22645407 AAGCTGGAAAAGATTC
1 AAGCTGGAAAAGATTC
22645423 AA
1 AA
22645425 TCTTTGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.18
Consensus pattern (16 bp):
AAGCTGGAAAAGATTC
Found at i:22651478 original size:41 final size:41
Alignment explanation
Indices: 22651431--22651520 Score: 144
Period size: 41 Copynumber: 2.2 Consensus size: 41
22651421 TATTGCATTC
** *
22651431 ATATTTTCTACCTTTAAGTTTAACTATCTTTTCCAACAATA
1 ATATTTTCTACCTCCAAGTGTAACTATCTTTTCCAACAATA
*
22651472 ATATTTTCTACCTCCAAGTGTAACTATCTTTTCCAACATTA
1 ATATTTTCTACCTCCAAGTGTAACTATCTTTTCCAACAATA
22651513 ATATTTTC
1 ATATTTTC
22651521 CCTTGCTTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.46
Consensus pattern (41 bp):
ATATTTTCTACCTCCAAGTGTAACTATCTTTTCCAACAATA
Found at i:22654828 original size:28 final size:26
Alignment explanation
Indices: 22654776--22654828 Score: 61
Period size: 28 Copynumber: 2.0 Consensus size: 26
22654766 TTATTTTGTT
**
22654776 AAAATAAATTTAAAAATTTAAAATCC
1 AAAATAAATTTAAAAATCGAAAATCC
*
22654802 AAAATTAATATTTAAAAATCGAGAATC
1 AAAA-TAA-ATTTAAAAATCGAAAATC
22654829 TGATGGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 3 0.14
28 15 0.68
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.30
Consensus pattern (26 bp):
AAAATAAATTTAAAAATCGAAAATCC
Found at i:22655127 original size:19 final size:19
Alignment explanation
Indices: 22655103--22655141 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
22655093 TAGTCACTGC
22655103 TCATGTATATTACTATGGT
1 TCATGTATATTACTATGGT
22655122 TCATGTATATTACTATGGT
1 TCATGTATATTACTATGGT
22655141 T
1 T
22655142 TCACAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (19 bp):
TCATGTATATTACTATGGT
Found at i:22657241 original size:39 final size:40
Alignment explanation
Indices: 22657187--22657363 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
22657177 AAACCAAGTA
* * * *
22657187 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
22657226 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22657266 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22657306 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
22657345 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22657364 TTATCATCCG
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 46 0.37
40 78 0.62
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22657264 original size:40 final size:40
Alignment explanation
Indices: 22657220--22657367 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
22657210 GCTACTTGCT
22657220 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
22657260 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
22657300 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
22657339 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
22657368 CATCCGAATA
Statistics
Matches: 100, Mismatches: 5, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 65 0.65
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:22657319 original size:79 final size:80
Alignment explanation
Indices: 22657220--22657367 Score: 237
Period size: 79 Copynumber: 1.9 Consensus size: 80
22657210 GCTACTTGCT
* *
22657220 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
22657284 GTTATAGTAACTCGCA
65 GTTATAGTAACTCGCA
* *
22657300 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
22657364 TTAT
66 TTAT
22657368 CATCCGAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 48 0.76
80 15 0.24
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
TTATAGTAACTCGCA
Found at i:22664994 original size:40 final size:40
Alignment explanation
Indices: 22664950--22665098 Score: 280
Period size: 40 Copynumber: 3.7 Consensus size: 40
22664940 GCTACTTGCT
22664950 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
22664990 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
22665030 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
22665070 CAAATGCCTTCGGGATTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
22665099 CATCCAAATA
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:22665049 original size:80 final size:80
Alignment explanation
Indices: 22664917--22665094 Score: 297
Period size: 80 Copynumber: 2.2 Consensus size: 80
22664907 AAACCAAGTA
* * *
22664917 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGATTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
22664981 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
22664996 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGATTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
22665060 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
22665076 CCTTCGGGATTTAGCCCGG
1 CCTTCGGGATTTAGCCCGG
22665095 TTATCATCCA
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 13 0.14
80 79 0.86
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGATTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:22684343 original size:40 final size:40
Alignment explanation
Indices: 22684291--22684562 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
22684281 ATAACCACAA
* * * *
22684291 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
22684331 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22684371 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22684411 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
22684453 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22684493 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22684533 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
22684563 GTATTCAAAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:22684482 original size:122 final size:122
Alignment explanation
Indices: 22684291--22684570 Score: 467
Period size: 122 Copynumber: 2.3 Consensus size: 122
22684281 ATAACCACAA
* * * *
22684291 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
22684354 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22684411 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
22684476 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22684533 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
22684571 ATGCTCATGC
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 115 0.77
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:22692818 original size:40 final size:40
Alignment explanation
Indices: 22692766--22693037 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
22692756 ATAACCACAA
* * * *
22692766 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
22692806 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22692846 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22692886 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
22692928 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22692968 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22693008 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
22693038 GTATTCAAAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:22692957 original size:122 final size:122
Alignment explanation
Indices: 22692766--22693045 Score: 467
Period size: 122 Copynumber: 2.3 Consensus size: 122
22692756 ATAACCACAA
* * * *
22692766 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
22692829 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22692886 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
22692951 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
22693008 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
22693046 ATGCTCATGC
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 115 0.77
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:22695459 original size:14 final size:16
Alignment explanation
Indices: 22695442--22695477 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
22695432 TTATTTTAAT
22695442 ATTTTTTT-AATT-TA
1 ATTTTTTTAAATTCTA
22695456 ATTTTTTTAAATTCTA
1 ATTTTTTTAAATTCTA
22695472 ATTTTT
1 ATTTTT
22695478 CTTTTGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.40
15 4 0.20
16 8 0.40
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTTTTTTAAATTCTA
Found at i:22695461 original size:15 final size:15
Alignment explanation
Indices: 22695429--22695477 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
22695419 GCCTTTTTTA
*
22695429 TTTTTATTTTAATATT
1 TTTTTAATTTAAT-TT
22695445 TTTTTAATTTAATTT
1 TTTTTAATTTAATTT
*
22695460 TTTTAAATTCTAATTT
1 TTTTTAATT-TAATTT
22695476 TT
1 TT
22695478 CTTTTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 10 0.33
16 20 0.67
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTAATTTAATTT
Found at i:22701761 original size:24 final size:24
Alignment explanation
Indices: 22701734--22701803 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
22701724 AGATTGATTA
22701734 ATTTAATAACTATGTATGTGCAAT
1 ATTTAATAACTATGTATGTGCAAT
*
22701758 ATTTAACAA-T-TG-AT-T---A-
1 ATTTAATAACTATGTATGTGCAAT
22701774 ATTTAATAACTATGTATGTGCAAT
1 ATTTAATAACTATGTATGTGCAAT
22701798 ATTTAA
1 ATTTAA
22701804 CAAAAGACCA
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
16 8 0.22
17 2 0.06
18 2 0.06
19 2 0.06
20 2 0.06
21 2 0.06
22 2 0.06
23 2 0.06
24 14 0.39
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (24 bp):
ATTTAATAACTATGTATGTGCAAT
Found at i:22701777 original size:40 final size:40
Alignment explanation
Indices: 22701726--22701806 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
22701716 TTTTTGAAAG
22701726 ATTGATTAATTTAATAACTATGTATGTGCAATATTTAACA
1 ATTGATTAATTTAATAACTATGTATGTGCAATATTTAACA
22701766 ATTGATTAATTTAATAACTATGTATGTGCAATATTTAACA
1 ATTGATTAATTTAATAACTATGTATGTGCAATATTTAACA
22701806 A
1 A
22701807 AAGACCAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (40 bp):
ATTGATTAATTTAATAACTATGTATGTGCAATATTTAACA
Found at i:22702338 original size:19 final size:19
Alignment explanation
Indices: 22702314--22702353 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22702304 TTCGGAAGGC
*
22702314 AACCTAAGTGTTTTTTATT
1 AACCTAACTGTTTTTTATT
*
22702333 AACCTAACTTTTTTTTATT
1 AACCTAACTGTTTTTTATT
22702352 AA
1 AA
22702354 ACAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (19 bp):
AACCTAACTGTTTTTTATT
Found at i:22706408 original size:26 final size:26
Alignment explanation
Indices: 22706379--22706430 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22706369 CCCTTTTCCC
22706379 TACTCCACTCATGCCGCTA-TTCCATT
1 TACTCCACTCATGCCG-TAGTTCCATT
* *
22706405 TACTCTACTTATGCCGTAGTTCCATT
1 TACTCCACTCATGCCGTAGTTCCATT
22706431 CAACGCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.19, C:0.33, G:0.10, T:0.38
Consensus pattern (26 bp):
TACTCCACTCATGCCGTAGTTCCATT
Found at i:22713047 original size:21 final size:22
Alignment explanation
Indices: 22713007--22713047 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
22712997 TTCCAAATAA
* *
22713007 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
22713029 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
22713048 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:22722854 original size:46 final size:46
Alignment explanation
Indices: 22722743--22722961 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
22722733 GTATATCTAT
**
22722743 GCCGATGTCATGTCCCAGACATGGTCTTACACT-GACACATC-T-TGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CAC-TCGTCTCAAG
* * * *
22722789 GCTGATGCATGTCCCAGACATGTCTTACACTATC-TTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAG
* *
22722835 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAG
* * * *
22722881 GTCGATGCCGTGTCCCAGACATGTCTTACACT-G-GCTC-TCACAATGTG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAA---G
*
22722928 GTCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
22722962 TCACACATGT
Statistics
Matches: 143, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 17 0.12
45 19 0.13
46 74 0.52
47 31 0.22
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAG
Found at i:22722912 original size:47 final size:45
Alignment explanation
Indices: 22722792--22722961 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 45
22722782 TCTTGTAGCT
* * * * *
22722792 GATGCATGTCCCAGACATGTCTTACACTATCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCAATGTC
*
22722838 GATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCAATGTC
* * *
22722884 GATGCCGTGTCCCAGACATGTCTTACACT-GGCTC-TCACAATGTGGTC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCCTCGTCTCAA--T-GTC
22722931 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
22722962 TCACACATGT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 5 0.05
45 3 0.03
46 67 0.63
47 31 0.29
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCAATGTC
Found at i:22733940 original size:55 final size:56
Alignment explanation
Indices: 22733871--22733999 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 56
22733861 ATCAAGCTTA
* *
22733871 CCAAAACAACACGGGCGTGA-GACATGCCT-GTGTGGAAGAACCGTGGGCGAGCCTG
1 CCAAAACAACACGGGCGTGATGACAT-CCTCGTGTGGAACAACCGTGGGCGAACCTG
* *
22733926 CCAAAACAACACGGGCGT-ATGACATCCTCGTGTGGAACACCCGTGGTCGAACCTG
1 CCAAAACAACACGGGCGTGATGACATCCTCGTGTGGAACAACCGTGGGCGAACCTG
** * *
22733981 TTAAAATAACAAGGGCGTG
1 CCAAAACAACACGGGCGTG
22734000 GGGCTTGCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
54 4 0.06
55 59 0.94
ACGTcount: A:0.29, C:0.26, G:0.29, T:0.16
Consensus pattern (56 bp):
CCAAAACAACACGGGCGTGATGACATCCTCGTGTGGAACAACCGTGGGCGAACCTG
Found at i:22740233 original size:28 final size:28
Alignment explanation
Indices: 22740193--22740259 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
22740183 CGTGTGCCTG
*
22740193 GCCCATGTCCTTCACATGGCCATGACAC
1 GCCCATGTCCTTCACACGGCCATGACAC
*
22740221 GCCCGTGTCCTTCACACGGCCATGACAC
1 GCCCATGTCCTTCACACGGCCATGACAC
* *
22740249 ACCTATGTCCT
1 GCCCATGTCCT
22740260 AGTCCATGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.40, G:0.18, T:0.22
Consensus pattern (28 bp):
GCCCATGTCCTTCACACGGCCATGACAC
Found at i:22741454 original size:48 final size:46
Alignment explanation
Indices: 22741273--22741494 Score: 197
Period size: 46 Copynumber: 4.8 Consensus size: 46
22741263 TAGTATATCT
* * *
22741273 GTGCCAATGTCATGTCCCAGAGATGGTCTTACACT-G-ACACATCTC-
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCA
* * *
22741318 GTAGCCGATGCATGTCCCAGACATGTCTTACACTATC-TTAAGTCTCGA
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCA-TCTC-A
*
22741366 G-GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCA
* * * *
22741411 GTGCCGATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCA--TAA
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCA
* *
22741457 TGTGGCCGATGCATGTCTCAGACATATCTTACACTAGC
1 -GT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
22741495 TCACACAAGT
Statistics
Matches: 146, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 18 0.12
46 65 0.45
47 29 0.20
48 24 0.16
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCA
Found at i:22741468 original size:94 final size:94
Alignment explanation
Indices: 22741228--22741499 Score: 274
Period size: 94 Copynumber: 2.9 Consensus size: 94
22741218 GGTCAGACAT
* * * *
22741228 CGATGCCATGTCCCAGACATGGTCTT-CACAAGTTCTAGTATATCTGTGCCAATGTCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTA-ATGTG-GCCGATG-CATGTCCCA
*
22741292 GAGATGGTCTTACACT-G-ACACATCTCGTAGC
63 GACAT-GTCTTACACTAGCACACATCTCGTAGC
* * * *
22741323 CGATG-CATGTCCCAGACAT-GTCTTACACTATCT-TAAGT-CTCGAGGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AGTAAT-GTGGCCGATGCATGTCCCAG
*
22741384 ACATGTCTTACACTAGCACTCATCTCAGT-GC
64 ACATGTCTTACACTAGCACACATCTC-GTAGC
* * *
22741415 CGATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCA-TAATGTGGCCGATGCATGTCTCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AGTAATGTGGCCGATGCATGTCCCAGA
* *
22741479 CATATCTTACACTAGCTCACA
65 CATGTCTTACACTAGCACACA
22741500 CAAGTGACCC
Statistics
Matches: 146, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
90 10 0.07
91 14 0.10
92 21 0.14
93 22 0.15
94 71 0.49
95 8 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTAATGTGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACACATCTCGTAGC
Found at i:22741479 original size:47 final size:45
Alignment explanation
Indices: 22741228--22741496 Score: 174
Period size: 46 Copynumber: 5.8 Consensus size: 45
22741218 GGTCAGACAT
* *
22741228 CGATGCCATGTCCCAGACATGGTCTT-CACAAGTTCT-AGTATATCTGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCA-TATA---GTGC
* * * * * *
22741277 CAATGTCATGTCCCAGAGATGGTCTTACACT-G-ACACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATAGT-GC
* * *
22741323 CGATGCATGTCCCAGACATGTCTTACACTATCT-TAAGTCTCGAG-GC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-TAT--AGTGC
* * *
22741369 TGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCAGTGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AGTGC
* *
22741415 CGATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATA-GT-GC
* *
22741463 CGATGCATGTCTCAGACATATCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
22741497 ACACAAGTGA
Statistics
Matches: 177, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 10 0.06
45 18 0.10
46 64 0.36
47 29 0.16
48 28 0.16
49 25 0.14
50 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATAGTGC
Found at i:22752076 original size:11 final size:11
Alignment explanation
Indices: 22752062--22752101 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
22752052 GTTTTCTCCT
22752062 TATTTTGCTAC
1 TATTTTGCTAC
* *
22752073 TATTTTACTAT
1 TATTTTGCTAC
*
22752084 TATGTTGCTAC
1 TATTTTGCTAC
22752095 TATTTTG
1 TATTTTG
22752102 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:22752347 original size:12 final size:12
Alignment explanation
Indices: 22752326--22752359 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22752316 TATATATTTT
*
22752326 AAAATTATATAA
1 AAAATAATATAA
22752338 AAAATAATATAA
1 AAAATAATATAA
*
22752350 AAATTAATAT
1 AAAATAATAT
22752360 GGACGGGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:22758288 original size:7 final size:7
Alignment explanation
Indices: 22758272--22758312 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
22758262 TTATAATACG
22758272 AATTACA
1 AATTACA
*
22758279 AATTAGA
1 AATTACA
22758286 AATTACA
1 AATTACA
22758293 AATTACA
1 AATTACA
*
22758300 AATTACG
1 AATTACA
22758307 AATTAC
1 AATTAC
22758313 GAATCACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (7 bp):
AATTACA
Found at i:22758313 original size:7 final size:7
Alignment explanation
Indices: 22758268--22758316 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
22758258 AATTTTATAA
22758268 TACGAAT
1 TACGAAT
*
22758275 TACAAAT
1 TACGAAT
22758282 TA-GAAAT
1 TACG-AAT
*
22758289 TACAAAT
1 TACGAAT
*
22758296 TACAAAT
1 TACGAAT
22758303 TACGAAT
1 TACGAAT
22758310 TACGAAT
1 TACGAAT
22758317 CACATACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (7 bp):
TACGAAT
Found at i:22770828 original size:8 final size:8
Alignment explanation
Indices: 22770815--22770841 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
22770805 TTTACGGAAT
22770815 TATGCACA
1 TATGCACA
22770823 TATGCACA
1 TATGCACA
22770831 TATGCACA
1 TATGCACA
22770839 TAT
1 TAT
22770842 CAGAACAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (8 bp):
TATGCACA
Found at i:22773611 original size:18 final size:18
Alignment explanation
Indices: 22773588--22773625 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22773578 TTGAGTTTTT
22773588 TAATTCGAATAACTCAAA
1 TAATTCGAATAACTCAAA
*
22773606 TAATTCGAATAATTCAAA
1 TAATTCGAATAACTCAAA
22773624 TA
1 TA
22773626 TCAAACTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (18 bp):
TAATTCGAATAACTCAAA
Found at i:22773856 original size:19 final size:21
Alignment explanation
Indices: 22773822--22773863 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
22773812 CTCCCAAAAA
*
22773822 CCCTCAAAACTTTTTATTTTC
1 CCCTCAAAACTTTTTACTTTC
22773843 CCCT-AAAA-TTTTTACTTTC
1 CCCTCAAAACTTTTTACTTTC
22773862 CC
1 CC
22773864 ATCCCACCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 4 0.20
21 4 0.20
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (21 bp):
CCCTCAAAACTTTTTACTTTC
Found at i:22775095 original size:17 final size:19
Alignment explanation
Indices: 22775059--22775099 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
22775049 TAATGACAAG
22775059 CATCATTTGACTACACACA
1 CATCATTTGACTACACACA
*
22775078 CATCATTTGATTACACACA
1 CATCATTTGACTACACACA
22775097 CAT
1 CAT
22775100 ACACATGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (19 bp):
CATCATTTGACTACACACA
Found at i:22778916 original size:43 final size:43
Alignment explanation
Indices: 22778869--22779135 Score: 238
Period size: 43 Copynumber: 6.2 Consensus size: 43
22778859 TCCCAAATGT
* *
22778869 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
* * * *** * *
22778912 GGTCTTACACGAAATTAAATA-CGATGTCAATGTATTAGATAT
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
* ***
22778954 GGTCTTACACGAAAATCTCAA-ATCGATGCCAAC-GTCCCAGATGT
1 GGTCTTACACG-AAATC-AAATATCGATGCC-ACTGTCCCAGACAA
* * * *
22778998 GGTCTTCCACGAAATCATATATCGATGCCAAC-GTCCCAAACGTA
1 GGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGAC-AA
* * *
22779042 -GTCTTACACGAAATCATATATCGATGCCACTGTCCTAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
* * *
22779084 GGTCTTACACGAAATCATATATCGATCCCACTGTCCTAGACAA
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
22779127 GGTCTTACA
1 GGTCTTACA
22779136 TGATATCTCA
Statistics
Matches: 184, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
42 28 0.15
43 130 0.71
44 25 0.14
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
Found at i:22779109 original size:129 final size:129
Alignment explanation
Indices: 22778850--22779097 Score: 320
Period size: 129 Copynumber: 1.9 Consensus size: 129
22778840 AACTCATACA
* * *
22778850 ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGT
1 ATGCCAACGTCCCAAATGTGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAAGGT
* * * * *
22778915 CTTACACGAAATTAAATACGATGTCAATGTATTAGATATGGTCTTACACGAAAATCTCAAATCG
66 CTTACACGAAATCAAATACGATGCCAATGTACTAGACAGGGTCTTACACGAAAATCTCAAATCG
* * * *
22778979 ATGCCAACGTCCCAGATGTGGTCTTCCACGAAATCATATATCGATGCCAAC-GTCCCAAACGTA-
1 ATGCCAACGTCCCAAATGTGGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAAAC-AAG
* * *
22779042 GTCTTACACGAAATCATATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAAA
64 GTCTTACACGAAATCAAATA-CGATGCCAATGTACTAGACAGGGTCTTACACGAAA
22779098 TCATATATCG
Statistics
Matches: 101, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
129 69 0.68
130 32 0.32
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (129 bp):
ATGCCAACGTCCCAAATGTGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAAGGT
CTTACACGAAATCAAATACGATGCCAATGTACTAGACAGGGTCTTACACGAAAATCTCAAATCG
Found at i:22779131 original size:129 final size:129
Alignment explanation
Indices: 22778881--22779132 Score: 271
Period size: 129 Copynumber: 2.0 Consensus size: 129
22778871 TCTTACATGT
* * *
22778881 AATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAATTAAATACGATGTCAATGTA
1 AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACGAAATCAAATACGATGCCAATGTA
* * * ***
22778946 TTAGATATGGTCTTACACGAAAATCTCAAATCGATGCCAACGTCCCAGATGTGGTCTTCCACGA
66 CTAGACAGGGTCTTACACGAAAATCTCAAATCGATGCCAACGTCCCAGACAAGGTCTTCCACGA
* * * *
22779010 AATCATATATCGATGCCAAC-GTCCCAAACGTA-GTCTTACACGAAATCATATATCGATGCCACT
1 AATCAAATATCGATGCC-ACTGTCCCAAAC-AAGGTCTTACACGAAATCAAATA-CGATGCCAAT
* * * *
22779073 GTCCTAGACAGGGTCTTACACG-AAATCAT-ATATCGAT-CCCACTGTCCTAGACAAGGTCTT
63 GTACTAGACAGGGTCTTACACGAAAATC-TCAAATCGATGCCAAC-GTCCCAGACAAGGTCTT
22779133 ACATGATATC
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
128 4 0.04
129 67 0.66
130 30 0.30
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (129 bp):
AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACGAAATCAAATACGATGCCAATGTA
CTAGACAGGGTCTTACACGAAAATCTCAAATCGATGCCAACGTCCCAGACAAGGTCTTCCACGA
Found at i:22781234 original size:20 final size:22
Alignment explanation
Indices: 22781192--22781248 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
22781182 GCAAATCAAT
*
22781192 TAAATAAATTATTAAA-A-ATAA
1 TAAA-AAATTATAAAATACATAA
22781213 T-AAAAATTA-AAAATACATAA
1 TAAAAAATTATAAAATACATAA
22781233 TAAAAAATTATAAAAT
1 TAAAAAATTATAAAAT
22781249 GGTTCAACCG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.10
19 7 0.23
20 7 0.23
21 9 0.29
22 5 0.16
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAAAATTATAAAATACATAA
Found at i:22784395 original size:20 final size:18
Alignment explanation
Indices: 22784357--22784404 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
22784347 GACCAATATT
*
22784357 ATATTATTTTTCTTGTCAACA
1 ATATT-TTTTTATTGTC-A-A
*
22784378 ATATTTTTTTATTTTCAA
1 ATATTTTTTTATTGTCAA
22784396 ATATTTTTT
1 ATATTTTTT
22784405 AAATTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 10 0.40
19 1 0.04
20 9 0.36
21 5 0.20
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.62
Consensus pattern (18 bp):
ATATTTTTTTATTGTCAA
Found at i:22784892 original size:70 final size:70
Alignment explanation
Indices: 22784779--22784920 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
22784769 CATTAACTAT
22784779 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
1 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
22784844 ATATA
66 ATATA
22784849 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
1 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
22784914 ATATA
66 ATATA
22784919 TC
1 TC
22784921 AAACATATGT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.30
Consensus pattern (70 bp):
TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
ATATA
Found at i:22784954 original size:70 final size:69
Alignment explanation
Indices: 22784779--22784954 Score: 178
Period size: 70 Copynumber: 2.5 Consensus size: 69
22784769 CATTAACTAT
** * **
22784779 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
1 TCCAA-TAAATTGTAAACATGAATTTTAATCAAAAACACCAACTCTAACACACTATACAAAAAAA
22784844 ATATA
65 ATATA
** * **
22784849 TCCAATTAAATTGTTGACATGATTTTTTCTCAAAAACACCAACTCTAACACACTATACAAAAAAA
1 TCCAA-TAAATTGTAAACATGAATTTTAATCAAAAACACCAACTCTAACACACTATACAAAAAAA
22784914 ATATA
65 ATATA
*
22784919 T-CAA-ACATATGTCAAAACATGTAATTTTAAT-AAAAA
1 TCCAATAAAT-TGT--AAACATG-AATTTTAATCAAAAA
22784955 GTATTAGTAT
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
67 3 0.03
68 3 0.03
69 3 0.03
70 81 0.84
71 6 0.06
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.30
Consensus pattern (69 bp):
TCCAATAAATTGTAAACATGAATTTTAATCAAAAACACCAACTCTAACACACTATACAAAAAAAA
TATA
Found at i:22790038 original size:40 final size:40
Alignment explanation
Indices: 22789962--22790105 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
22789952 TAACTCATTC
* *
22789962 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
22790002 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
22790042 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
22790083 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22790106 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:22791972 original size:27 final size:27
Alignment explanation
Indices: 22791942--22792176 Score: 169
Period size: 27 Copynumber: 8.7 Consensus size: 27
22791932 GACCCTGGGT
*
22791942 TGAAATTACTGAAATACCCCTAATTTG
1 TGAAATTACCGAAATACCCCTAATTTG
* **
22791969 TGAAATTACCGAAATGCCCCCGATTTG
1 TGAAATTACCGAAATACCCCTAATTTG
* *
22791996 TAAAATTATCGAAATACCCTCT-ATTTG
1 TGAAATTACCGAAATACCC-CTAATTTG
*
22792023 -GAAAATTACCGAAATA-CCCTCAATTTA
1 TG-AAATTACCGAAATACCCCT-AATTTG
* **
22792050 TAAAATTACAAAAATA-CCCTCAATTTG
1 TGAAATTACCGAAATACCCCT-AATTTG
* **
22792077 -GAAAATTACCAAAATACCCCCGATTTG
1 TG-AAATTACCGAAATACCCCTAATTTG
** * * *
22792104 CAAAATTATCGAAATACCCCCAGTTTG
1 TGAAATTACCGAAATACCCCTAATTTG
* *
22792131 -GAAAATTACCGAAATACCTCC-AGTTCG
1 TG-AAATTACCGAAATACC-CCTAATTTG
*
22792158 TAAAATTACCGAAATACCC
1 TGAAATTACCGAAATACCC
22792177 TGGTAGTGTA
Statistics
Matches: 169, Mismatches: 28, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
25 2 0.01
26 3 0.02
27 158 0.93
28 6 0.04
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
TGAAATTACCGAAATACCCCTAATTTG
Found at i:22792082 original size:81 final size:80
Alignment explanation
Indices: 22791944--22792177 Score: 254
Period size: 81 Copynumber: 2.9 Consensus size: 80
22791934 CCCTGGGTTG
* * * * * *
22791944 AAATTACTGAAATACCCCTAATTTGTGAAATTACCGAAATGCCCCCGATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCC-AATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAA
* *
22792009 ATACCCTCTATTTGGA
65 ATACCCTCGATTTGCA
* ** * *
22792025 AAATTACCGAAATACCCTCAATTTATAAAATTACAAAAATACCCTCAATTTGGAAAATTACCAAA
1 AAATTACCGAAATACCC-CAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAA
*
22792090 ATACCCCCGATTTGCA
65 ATACCCTCGATTTGCA
* * * * *
22792106 AAATTATCGAAATACCCCCAGTTTGGAAAATTACCGAAATA-CCTCCAGTTCGTAAAATTACCGA
1 AAATTACCGAAATA-CCCCAATTTGTAAAATTACCGAAATACCCT-CAATTTGTAAAATTACCGA
22792170 AATACCCT
64 AATACCCT
22792178 GGTAGTGTAA
Statistics
Matches: 125, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
80 3 0.02
81 118 0.94
82 4 0.03
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (80 bp):
AAATTACCGAAATACCCCAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAA
TACCCTCGATTTGCA
Found at i:22792190 original size:54 final size:54
Alignment explanation
Indices: 22791944--22792177 Score: 262
Period size: 54 Copynumber: 4.3 Consensus size: 54
22791934 CCCTGGGTTG
* * *
22791944 AAATTACTGAAATACCC-CTAATTTGTG-AAATTACCGAAATGCCCCCGATTTGTA
1 AAATTACCGAAATACCCTCT-ATTTG-GAAAATTACCGAAATACCCCAGATTTGTA
* *
22791998 AAATTATCGAAATACCCTCTATTTGGAAAATTACCGAAATACCCTCA-ATTTATA
1 AAATTACCGAAATACCCTCTATTTGGAAAATTACCGAAATACCC-CAGATTTGTA
** * * * *
22792052 AAATTACAAAAATACCCTCAATTTGGAAAATTACCAAAATACCCCCGATTTGCA
1 AAATTACCGAAATACCCTCTATTTGGAAAATTACCGAAATACCCCAGATTTGTA
* * *
22792106 AAATTATCGAAATACCC-CCAGTTTGGAAAATTACCGAAATACCTCCAG-TTCGTA
1 AAATTACCGAAATACCCTCTA-TTTGGAAAATTACCGAAATACC-CCAGATTTGTA
22792160 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
22792178 GGTAGTGTAA
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
53 4 0.03
54 141 0.93
55 6 0.04
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCTATTTGGAAAATTACCGAAATACCCCAGATTTGTA
Found at i:22792250 original size:26 final size:27
Alignment explanation
Indices: 22792157--22792401 Score: 168
Period size: 27 Copynumber: 9.3 Consensus size: 27
22792147 CCTCCAGTTC
* *
22792157 GTAAAATTACCGA-AATA-CCCTGGTAGT
1 GTAAAATGACC-ATAATACCCCT-GTAGG
* * * * *
22792184 GTAAAATGATCGTAATATCCTTGTAAG
1 GTAAAATGACCATAATACCCCTGTAGG
* *
22792211 GTAAACA-G-CCATAATGCCCTTGTAGG
1 GTAAA-ATGACCATAATACCCCTGTAGG
*
22792237 GT-AAATGACTATAATACCCCTGTAGG
1 GTAAAATGACCATAATACCCCTGTAGG
22792263 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCATAATACCCCTGTAGG
* * *
22792290 ATAAAATGACCGTAATGCCTCC-GTAGG
1 GTAAAATGACCATAATACC-CCTGTAGG
* * ** *
22792317 ATAAAATGACCGTAATGTCCCTATAGG
1 GTAAAATGACCATAATACCCCTGTAGG
* * * *
22792344 GTGAAATGACCGTAATGCCCCTATA-G
1 GTAAAATGACCATAATACCCCTGTAGG
* *
22792370 G---AATGATCATAATACCCCTGTAAG
1 GTAAAATGACCATAATACCCCTGTAGG
22792394 GTAAAATG
1 GTAAAATG
22792402 GCGATTATGC
Statistics
Matches: 179, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
23 17 0.09
24 3 0.02
25 3 0.02
26 36 0.20
27 114 0.64
28 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTGTAGG
Found at i:22792269 original size:27 final size:27
Alignment explanation
Indices: 22792219--22792401 Score: 171
Period size: 27 Copynumber: 7.0 Consensus size: 27
22792209 AGGTAAACAG
*
22792219 CCATAATGCCCTTGTAGGGT-AAATGA
1 CCATAATGCCCCTGTAGGGTAAAATGA
* *
22792245 CTATAATACCCCTGTAGGGTAAAATGA
1 CCATAATGCCCCTGTAGGGTAAAATGA
* *
22792272 CCATAATACCCCTGTAGGATAAAATGA
1 CCATAATGCCCCTGTAGGGTAAAATGA
* *
22792299 CCGTAATGCCTCC-GTAGGATAAAATGA
1 CCATAATGCC-CCTGTAGGGTAAAATGA
* * * *
22792326 CCGTAATGTCCCTATAGGGTGAAATGA
1 CCATAATGCCCCTGTAGGGTAAAATGA
* *
22792353 CCGTAATGCCCCTATA-GG---AATGA
1 CCATAATGCCCCTGTAGGGTAAAATGA
* * *
22792376 TCATAATACCCCTGTAAGGTAAAATG
1 CCATAATGCCCCTGTAGGGTAAAATG
22792402 GCGATTATGC
Statistics
Matches: 134, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
23 17 0.13
24 2 0.01
26 21 0.16
27 92 0.69
28 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
CCATAATGCCCCTGTAGGGTAAAATGA
Found at i:22792583 original size:27 final size:27
Alignment explanation
Indices: 22792539--22792625 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
22792529 ATGGAGGGAA
* *
22792539 TACTG-TACTGGTGACTATGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* *
22792565 TACTGTTACTAGTGGCTATGCCACAAT
1 TACTGTTACTGGTGGCTATGCCACATT
* * *
22792592 TACTGATACTGGTGGCTTTGCCATATT
1 TACTGTTACTGGTGGCTATGCCACATT
22792619 TACTGTT
1 TACTGTT
22792626 TTTGGCAGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.10
27 45 0.90
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Found at i:22800162 original size:42 final size:42
Alignment explanation
Indices: 22800103--22800182 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
22800093 GATGTTGATG
*
22800103 CAATGCAAGTATAATAGGAAAGTTCCTACCCATACTCCGTTA
1 CAATGCAAGTATAATAGGAAAGTTCCTACCCACACTCCGTTA
22800145 CAATGCAAGTATAATAGGAAAGTTCCTACCCACACTCC
1 CAATGCAAGTATAATAGGAAAGTTCCTACCCACACTCC
22800183 ATTTTGTGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (42 bp):
CAATGCAAGTATAATAGGAAAGTTCCTACCCACACTCCGTTA
Found at i:22800312 original size:43 final size:43
Alignment explanation
Indices: 22800264--22800359 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
22800254 TTAAAAAAAG
* *
22800264 GTTTGTAGTTAAACTGCCAGTAAGTTATGGATAAACCACCAGT
1 GTTTGTAGATAAACTGCCAGTAAGTCATGGATAAACCACCAGT
* * *
22800307 GTTTGTACATAAATTGCCAGTAAGTCATGGATGAACCACCAGT
1 GTTTGTAGATAAACTGCCAGTAAGTCATGGATAAACCACCAGT
22800350 GTTTGTAGAT
1 GTTTGTAGAT
22800360 TATTAAACTG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
GTTTGTAGATAAACTGCCAGTAAGTCATGGATAAACCACCAGT
Found at i:22800488 original size:38 final size:37
Alignment explanation
Indices: 22800445--22800596 Score: 135
Period size: 38 Copynumber: 4.0 Consensus size: 37
22800435 TACAGAAACA
* * *
22800445 ATAGACATACTTAACATGTAATCGGTTCAACAGTAGCGT
1 ATAGACATGCTTAACATGTATTCAGTTCAACAGT--CGT
* *
22800484 -TAGACATGCTTAACTTGTATTCTGTTCAACAGTCGT
1 ATAGACATGCTTAACATGTATTCAGTTCAACAGTCGT
* * *
22800520 AGTAGACATGCTTAACATGTATTCAGTTCAATACTCGC
1 A-TAGACATGCTTAACATGTATTCAGTTCAACAGTCGT
* * * * * *
22800558 AGTAGGCATGCTTCACATGTTTTTAGGTCAACAATCGT
1 A-TAGACATGCTTAACATGTATTCAGTTCAACAGTCGT
22800596 A
1 A
22800597 GTGTTAATAG
Statistics
Matches: 94, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
36 3 0.03
38 91 0.97
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (37 bp):
ATAGACATGCTTAACATGTATTCAGTTCAACAGTCGT
Found at i:22808268 original size:42 final size:42
Alignment explanation
Indices: 22808157--22808319 Score: 209
Period size: 42 Copynumber: 3.9 Consensus size: 42
22808147 TACCATACCA
* *
22808157 ATGCCATATCCCAGATATAGTCTTACATGAAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCGTATCG
* * *
22808199 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCGTATCG
* ** * *
22808242 ATGCCATATCCCAGGTATGGTCTTACAAAAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCGTATCG
* *
22808284 ATGTCATATCCCAGATATGGTCTTACACGTAATCTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTC
22808320 AGTAATAATG
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 66 0.64
43 37 0.36
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCGTATCG
Found at i:22815089 original size:37 final size:38
Alignment explanation
Indices: 22815003--22815187 Score: 167
Period size: 43 Copynumber: 4.7 Consensus size: 38
22814993 ATCGCAACTC
* * *
22815003 GCACAAATGCCTTCGGGACTTAACCCGGATATAGTACTC
1 GCACAAATGCCTTCGGGACTTAGCCC-GAAATAGTACTA
* *
22815042 GCACACATGCCTTC-GGTCTTAGCCC-AAATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGAAATAGT-ACTA
** *
22815079 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTC
1 GCACAAATGCCTTCGGGACTTAGCCC-GAAATAG----TACTA
* * *
22815122 GTACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTT
1 GCACAAATGCCTTCGGGACTTAGCCC-GAAATAGT-ACTA
*
22815162 GTACAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCC
22815188 AGATATCATC
Statistics
Matches: 124, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
36 6 0.05
37 16 0.13
38 19 0.15
39 14 0.11
40 33 0.27
43 35 0.28
44 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (38 bp):
GCACAAATGCCTTCGGGACTTAGCCCGAAATAGTACTA
Found at i:22815177 original size:40 final size:40
Alignment explanation
Indices: 22814973--22815193 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
22814963 AAACCAAGTA
* * *
22814973 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22815012 CCTTCGGGACTTAACCCGGATATAGT-ACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
22815051 CCTTC-GGTCTTAGCCC--AAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22815088 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
* *
22815131 CCTTCGGGACTTAGCCCGGATATAGTAACTTGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22815171 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22815194 CATCCGAATA
Statistics
Matches: 153, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
36 6 0.04
37 16 0.10
38 19 0.12
39 29 0.19
40 47 0.31
42 1 0.01
43 35 0.23
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22823423 original size:40 final size:40
Alignment explanation
Indices: 22823354--22823538 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
22823344 AAACCAAGTA
* * * *
22823354 CCTTCGGGATTTAG-TCGGATATCGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
22823393 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
22823433 CCTTCGGGTCTTAGCCCGGAAATAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
* * * *
22823473 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCACACAAATG
22823516 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22823539 CATCCGAATA
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 12 0.10
40 75 0.63
43 32 0.27
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:22831543 original size:24 final size:24
Alignment explanation
Indices: 22831489--22831535 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22831479 CCCAAAAAAG
**
22831489 CTACTGCTGAAGCACCCACTCAAC
1 CTACTGCCAAAGCACCCACTCAAC
*
22831513 CTACTGCCAAAGCACCTACTCAA
1 CTACTGCCAAAGCACCCACTCAA
22831536 TCTGCTGCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.40, G:0.11, T:0.17
Consensus pattern (24 bp):
CTACTGCCAAAGCACCCACTCAAC
Found at i:22840867 original size:3 final size:3
Alignment explanation
Indices: 22840861--22840899 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
22840851 AGAAGAAAAA
*
22840861 GAT GAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
22840900 AATAATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:22858746 original size:24 final size:24
Alignment explanation
Indices: 22858710--22858755 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22858700 CCGATAGATC
*
22858710 AGCTCATAAGAGCTTACTATTTTT
1 AGCTCATAAGAGCTTACCATTTTT
**
22858734 AGCTCATCGGAGCTTACCATTT
1 AGCTCATAAGAGCTTACCATTT
22858756 CAGCTCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (24 bp):
AGCTCATAAGAGCTTACCATTTTT
Found at i:22858975 original size:19 final size:19
Alignment explanation
Indices: 22858953--22859019 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
22858943 TGTTACACGA
22858953 ATGAATTACTGTTATATGG
1 ATGAATTACTGTTATATGG
* * *
22858972 ATGAAGTATTGTTTAAATGG
1 ATGAATTACTG-TTATATGG
* * *
22858992 ATGAGTTACTGTTAT-CGA
1 ATGAATTACTGTTATATGG
22859010 ATGAATTACT
1 ATGAATTACT
22859020 ATTTATATGA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
18 10 0.27
19 12 0.32
20 15 0.41
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (19 bp):
ATGAATTACTGTTATATGG
Found at i:22863461 original size:19 final size:20
Alignment explanation
Indices: 22863420--22863498 Score: 71
Period size: 20 Copynumber: 4.0 Consensus size: 20
22863410 GATTTAAGTC
22863420 TAAAAATTATTA-AAATGTTA
1 TAAAAATTA-TAGAAATGTTA
22863440 TAATAAATT-TAGAAAT-TTA
1 TAA-AAATTATAGAAATGTTA
22863459 TAAAAATTATAGAAAATG-TA
1 TAAAAATTATAG-AAATGTTA
*
22863479 -AAAATTTTATA-AAATGTTA
1 TAAAA-ATTATAGAAATGTTA
22863498 T
1 T
22863499 TACTATATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
18 10 0.20
19 17 0.34
20 18 0.36
21 5 0.10
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.39
Consensus pattern (20 bp):
TAAAAATTATAGAAATGTTA
Found at i:22863480 original size:18 final size:18
Alignment explanation
Indices: 22863459--22863495 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22863449 TAGAAATTTA
22863459 TAAAAATTATAGAAAATG
1 TAAAAATTATAGAAAATG
* *
22863477 TAAAAATTTTATAAAATG
1 TAAAAATTATAGAAAATG
22863495 T
1 T
22863496 TATTACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (18 bp):
TAAAAATTATAGAAAATG
Found at i:22863535 original size:10 final size:10
Alignment explanation
Indices: 22863420--22863536 Score: 54
Period size: 10 Copynumber: 11.8 Consensus size: 10
22863410 GATTTAAGTC
22863420 TAAAA-ATTA
1 TAAAATATTA
*
22863429 TTAAAATGTTA
1 -TAAAATATTA
22863440 TAATAA-ATT-
1 TAA-AATATTA
22863449 TAGAAAT-TTA
1 TA-AAATATTA
22863459 TAAAA-ATTA
1 TAAAATATTA
22863468 TAGAAA-ATGTA
1 TA-AAATAT-TA
*
22863479 -AAAATTTTA
1 TAAAATATTA
*
22863488 TAAAATGTTA
1 TAAAATATTA
**
22863498 TTACTATATTA
1 -TAAAATATTA
22863509 TGAAAA-A-TA
1 T-AAAATATTA
22863518 TGAAAATATTA
1 T-AAAATATTA
22863529 TAAAATAT
1 TAAAATAT
22863537 ATTTAGAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 28
0.69 0.07 0.23
Matches are distributed among these distances:
9 27 0.32
10 38 0.45
11 19 0.23
ACGTcount: A:0.55, C:0.01, G:0.06, T:0.38
Consensus pattern (10 bp):
TAAAATATTA
Found at i:22863935 original size:29 final size:29
Alignment explanation
Indices: 22863903--22863958 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
22863893 AAAATACTGC
*
22863903 AAAAAAT-TAGAATATTATTAAAAAATAGA
1 AAAAAATATAGAA-ATAATTAAAAAATAGA
*
22863932 AAAAAATATATAAATAATTAAAAAATA
1 AAAAAATATAGAAATAATTAAAAAATA
22863959 AGATTACTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.27
Consensus pattern (29 bp):
AAAAAATATAGAAATAATTAAAAAATAGA
Found at i:22864008 original size:18 final size:18
Alignment explanation
Indices: 22863979--22864026 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
22863969 TTTTTAGAGA
*
22863979 TTTTATACTTTTA-AATAT
1 TTTTATATTTTTATAA-AT
22863997 TTTTATATTTTTTATAAAT
1 TTTTATA-TTTTTATAAAT
22864016 TTTTAATATTT
1 TTTT-ATATTT
22864027 GTTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.27
19 14 0.54
20 5 0.19
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATATTTTTATAAAT
Found at i:22878410 original size:20 final size:22
Alignment explanation
Indices: 22878366--22878408 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
22878356 AATTTAGTTA
22878366 TTATATTTTTATTTTTAAGAAT
1 TTATATTTTTATTTTTAAGAAT
22878388 TTAT-TTTTTA-TTTTAA-AAT
1 TTATATTTTTATTTTTAAGAAT
22878407 TT
1 TT
22878409 TAAAATTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 6 0.29
21 6 0.29
22 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATATTTTTATTTTTAAGAAT
Found at i:22880682 original size:14 final size:14
Alignment explanation
Indices: 22880646--22880710 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
22880636 AACTCTCAAC
* *
22880646 TCTCAACTTATTGT
1 TCTCAATTTATTAT
* * *
22880660 TTTCGATTTATTGT
1 TCTCAATTTATTAT
*
22880674 TCTCAATTTGTTAT
1 TCTCAATTTATTAT
*
22880688 TCTCAATTTTTTAT
1 TCTCAATTTATTAT
*
22880702 TCTAAATTT
1 TCTCAATTT
22880711 CCAATTCCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (14 bp):
TCTCAATTTATTAT
Found at i:22882798 original size:46 final size:46
Alignment explanation
Indices: 22882748--22882923 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
22882738 TGATTGAGCA
22882748 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22882794 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22882839 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
22882887 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22882924 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22882904 original size:93 final size:93
Alignment explanation
Indices: 22882745--22882916 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
22882735 GGATGATTGA
*
22882745 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
22882810 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22882838 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
22882902 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
22882917 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22890817 original size:27 final size:27
Alignment explanation
Indices: 22890786--22890936 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
22890776 TAAATTGTAC
22890786 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22890813 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22890839 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22890867 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22890895 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22890922 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22890937 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22890900 original size:82 final size:81
Alignment explanation
Indices: 22890787--22890936 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
22890777 AAATTGTACA
*
22890787 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
22890851 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
22890868 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
22890933 TGCG
65 TGCG
22890937 GACTCAATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22897146 original size:27 final size:26
Alignment explanation
Indices: 22897116--22897264 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 26
22897106 AAATTGTACA
*
22897116 GCACTAAGTGTGCGATTGGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGAT
* * *
22897143 GCACTAAGTGTGCGAAATGAATGTGAT
1 GCACTAAGTGTGCG-ATTGACTATGAT
* * **
22897170 ACACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGAT
22897197 GCACTAAGTGTGCGAGTTTGACTATG-T
1 GCACTAAGTGTGCGA--TTGACTATGAT
*
22897224 AGCACTAAGTGTGCGATTTGATTAT-AT
1 -GCACTAAGTGTGCGA-TTGACTATGAT
*
22897251 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
22897265 GACTCAATAT
Statistics
Matches: 101, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
26 14 0.14
27 62 0.61
28 25 0.25
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGAT
Found at i:22897177 original size:54 final size:54
Alignment explanation
Indices: 22897115--22897264 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
22897105 TAAATTGTAC
* *
22897115 AGCACTAAGTGTGCGATTGGACTATGTTGCACTAAGTGTGCGA-AATGAATGTGAT
1 AGCACTAAGTGTGCGATT-GACTATGATGCACTAAGTGTGCGAGAATGAATATG-T
* ** ** *
22897170 A-CACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-ATTGACTATGATGCACTAAGTGTGCGAGAATGAATATGT
* *
22897224 AGCACTAAGTGTGCGATTTGATTAT-ATGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGA-TTGACTATGATGCACTAAGTGTGCG
22897265 GACTCAATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
54 50 0.63
55 29 0.37
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGATGCACTAAGTGTGCGAGAATGAATATGT
Found at i:22901212 original size:40 final size:41
Alignment explanation
Indices: 22901157--22901347 Score: 257
Period size: 40 Copynumber: 4.8 Consensus size: 41
22901147 ATTTGAATGA
* *
22901157 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
22901197 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
*
22901237 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
22901278 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
22901318 G--CCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
22901348 TGTGGTAATA
Statistics
Matches: 140, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 25 0.18
40 110 0.79
41 5 0.04
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
Found at i:22909538 original size:40 final size:40
Alignment explanation
Indices: 22909483--22909714 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
22909473 ATTTGAATGA
*
22909483 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22909523 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22909563 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
22909603 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * *
22909644 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
22909684 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
22909715 TGTGGTAATA
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 175 0.97
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:22909726 original size:80 final size:80
Alignment explanation
Indices: 22909484--22909742 Score: 319
Period size: 80 Copynumber: 3.2 Consensus size: 80
22909474 TTTGAATGAG
*
22909484 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
* *
22909549 TGTGCTAGTGAT-TT
66 TGTGCTAGTGGTAAT
22909563 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
1 -ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
* *
22909628 TTGTGCGAGTTG-ATAT
65 TTGTGCTAGTGGTA-AT
* * * * * * * *
22909644 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATG-CCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTTGATCCGGGCTAAGACCCGAAGGCAT
*
22909708 TTGTGCTTGTGGTAAT
65 TTGTGCTAGTGGTAAT
* *
22909724 ATCC-GGCTAAATTCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
22909743 AAACTTGGGT
Statistics
Matches: 156, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
79 12 0.08
80 137 0.88
81 7 0.04
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
TGTGCTAGTGGTAAT
Found at i:22913718 original size:45 final size:45
Alignment explanation
Indices: 22913654--22913813 Score: 149
Period size: 45 Copynumber: 3.6 Consensus size: 45
22913644 TATTTGGGCA
22913654 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAGCG
* * * *
22913699 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATG---CGA-GCG
*
22913746 TCCGAGCTCGTTGAG-TGA---CGAGTTCACTTATGGATG-GA-CG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAGCG
**
22913786 T-CGAGGTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
22913814 GCTTATGGGC
Statistics
Matches: 94, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
39 12 0.13
40 5 0.05
42 1 0.01
43 18 0.19
44 2 0.02
45 31 0.33
46 9 0.10
47 16 0.17
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAGCG
Found at i:22913810 original size:86 final size:90
Alignment explanation
Indices: 22913650--22913814 Score: 241
Period size: 86 Copynumber: 1.9 Consensus size: 90
22913640 GGGATATTTG
22913650 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTGA--CCGAGTTCATTATGGATGCGAGCGTCCGAACTCGTTGAGT
22913715 TGAGTCCGAGTTCGTGAGATGTAACTA
64 TGAGTCCGAGTTCGTGAGATGTAACTA
* **
22913742 GGCATCCGAGCTCGTTGAG-TGA-CGAGTTCACTTATGGATG-GA-CGT-CGAGGTCGTTGAGTT
1 GGCATCCGAACTCGTTGAGTTGACCGAGTTCA-TTATGGATGCGAGCGTCCGAACTCGTTGAGTT
22913802 GAGTCCGAGTTCG
65 GAGTCCGAGTTCG
22913815 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
86 26 0.38
87 3 0.04
88 10 0.14
89 9 0.13
91 3 0.04
92 18 0.26
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (90 bp):
GGCATCCGAACTCGTTGAGTTGACCGAGTTCATTATGGATGCGAGCGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTA
Found at i:22916743 original size:14 final size:14
Alignment explanation
Indices: 22916708--22916746 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
22916698 TATCTTGGGT
* *
22916708 TTCTTTATCCTGGA
1 TTCTTTATTCTAGA
22916722 TCTCTTTATTCTAGA
1 T-TCTTTATTCTAGA
22916737 TTCTTTATTC
1 TTCTTTATTC
22916747 CGGGTTTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.15, C:0.21, G:0.08, T:0.56
Consensus pattern (14 bp):
TTCTTTATTCTAGA
Found at i:22919324 original size:93 final size:91
Alignment explanation
Indices: 22919166--22919336 Score: 254
Period size: 93 Copynumber: 1.9 Consensus size: 91
22919156 GGGATATTTG
* * *
22919166 GGCATCCGAACTCGTTGAGTTGAGTCCAGTTCATTATGGATGCGAGCGTCCGAACTCGTTGAGTT
1 GGCATCCGAACTCGTTGAGTTGAGTCCAGTTCATTATGGATGCGAACATACGAACTCGTTGAGTT
22919231 GAGTCCGAGTTCGTGAGATGTAACTA
66 GAGTCCGAGTTCGTGAGATGTAACTA
* **
22919257 GGCATCCGAGCAT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATACGAGGTCGTTGA
1 GGCATCCGAAC-TCGTTGAGTTGAGTCC-AGTTCA-TTATGGATGCGAACATACGAACTCGTTGA
22919321 GTTGAGTCCGAGTTCG
63 GTTGAGTCCGAGTTCG
22919337 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
91 24 0.34
92 7 0.10
93 40 0.56
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAGTTCATTATGGATGCGAACATACGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTA
Found at i:22919335 original size:46 final size:46
Alignment explanation
Indices: 22919167--22919343 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 46
22919157 GGATATTTGG
22919167 GCATCCGA-ACTCGTTGAGTTGAGTCC-AGTTCA-TTATGGATGCGA
1 GCATCCGAGA-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
22919211 GCGTCCGA-ACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAGA-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
22919257 GGCATCCGAGCAT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAG-ATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
22919304 ACATACGAGGTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAGATCGTTGAGTTGAGTCCGAGTTCACTTATGG
22919344 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
43 4 0.04
44 25 0.23
45 8 0.07
46 36 0.33
47 29 0.26
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (46 bp):
GCATCCGAGATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:22924939 original size:55 final size:55
Alignment explanation
Indices: 22924851--22924959 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
22924841 TTGAATAGGC
22924851 ACGGGCGTGTAGTCTACCCGTGTAAATCATGCTTCGATCCTACCAAATGGACACA
1 ACGGGCGTGTAGTCTACCCGTGTAAATCATGCTTCGATCCTACCAAATGGACACA
* *
22924906 ACGGGCTTGTAGTCTACCCGTGTAAATCGTGCTTCGATCCTACCAAATGGACAC
1 ACGGGCGTGTAGTCTACCCGTGTAAATCATGCTTCGATCCTACCAAATGGACAC
22924960 GGCCGTGTAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (55 bp):
ACGGGCGTGTAGTCTACCCGTGTAAATCATGCTTCGATCCTACCAAATGGACACA
Found at i:22927679 original size:40 final size:40
Alignment explanation
Indices: 22927488--22927680 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
22927478 TCGGATAATA
* *
22927488 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATG
* * *
22927528 TCCGGGCTAAGTCCCGAAGGCAATTGTGAGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
* * *
22927568 ACCGGGTTAAGTACCGAAGGCATTTGTGAGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
22927608 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
22927648 ACCGGGCTAAGTCCCGAAGGCATTTGGGCGAGT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
22927681 AGCTATATCC
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
Found at i:22927706 original size:39 final size:40
Alignment explanation
Indices: 22927488--22927706 Score: 176
Period size: 40 Copynumber: 5.5 Consensus size: 40
22927478 TCGGATAATA
** * * *
22927488 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-
1 ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTACT-ATG
* ** * * *
22927528 TCCGGGCTAAGTCCCGAAGGCAATTGTGAGAGTTACTATG
1 ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTACTATG
* *** * *
22927568 ACCGGGTTAAGTACCGAAGGCATTTGTGAGAGTTACTATG
1 ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTACTATG
* ** *
22927608 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
1 ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTACTATG
**
22927648 ACCGGGCTAAGTCCCGAAGGCATTTGGGCGAG-TAGCTAT-
1 ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTA-CTATG
22927687 ATCC-GGCTAAACCCCGAAGG
1 A-CCGGGCTAAACCCCGAAGG
22927707 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 19 0.12
40 142 0.88
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
ACCGGGCTAAACCCCGAAGGCATTTGGGCGAGTTACTATG
Found at i:22933331 original size:31 final size:30
Alignment explanation
Indices: 22933296--22933360 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
22933286 TTAATATAAA
* *
22933296 AATTATA-AATTAATAATGTTAACAATTTAAT
1 AATTATATAATTAA-AAT-TTAAAAAATTAAT
22933327 AATTATATTAATTAAAATTTAAAAAATTAAT
1 AATTATA-TAATTAAAATTTAAAAAATTAAT
22933358 AAT
1 AAT
22933361 ATTTTCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 21 0.70
32 3 0.10
33 6 0.20
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (30 bp):
AATTATATAATTAAAATTTAAAAAATTAAT
Found at i:22937085 original size:48 final size:48
Alignment explanation
Indices: 22937030--22937125 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
22937020 TTTTATGACT
22937030 GAATTTGGAAAGAGGATAGAGGAAAACCAGTTATGGTAAAATCTATAA
1 GAATTTGGAAAGAGGATAGAGGAAAACCAGTTATGGTAAAATCTATAA
22937078 GAATTTGGAAAGAGGATAGAGGAAAACCAGTTATGGTAAAATCTATAA
1 GAATTTGGAAAGAGGATAGAGGAAAACCAGTTATGGTAAAATCTATAA
22937126 CAAGCAACTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.46, C:0.06, G:0.25, T:0.23
Consensus pattern (48 bp):
GAATTTGGAAAGAGGATAGAGGAAAACCAGTTATGGTAAAATCTATAA
Found at i:22942244 original size:19 final size:19
Alignment explanation
Indices: 22942211--22942256 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
22942201 AGATATATTT
*
22942211 TAAAT-TTATTTAGGTAGA
1 TAAATCTTATTCAGGTAGA
22942229 TAAATCTTATTCAGGTAGA
1 TAAATCTTATTCAGGTAGA
22942248 TAAATCTTA
1 TAAATCTTA
22942257 AAATAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (19 bp):
TAAATCTTATTCAGGTAGA
Found at i:22943277 original size:21 final size:20
Alignment explanation
Indices: 22943237--22943275 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22943227 CCCTGTAATA
*
22943237 AAATATAATATAGATCAAAG
1 AAATATAATATAGAGCAAAG
22943257 AAATAGTAAT-TAGAGCAAA
1 AAATA-TAATATAGAGCAAA
22943276 AGTTTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.59, C:0.05, G:0.13, T:0.23
Consensus pattern (20 bp):
AAATATAATATAGAGCAAAG
Found at i:22954277 original size:43 final size:42
Alignment explanation
Indices: 22954183--22954293 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 42
22954173 CAATATTGAT
* * *
22954183 GCCTCTGTCCCAGACAGGGTCTTACACTAAATCAACTACGAT
1 GCCTGTGTCCCAGACACGGTCTTACACTAAATCAACTACGAG
* *
22954225 GCC-GATGTCCCAGACATGGTCTTATACGTAAATCTCAA-T-CGAG
1 GCCTG-TGTCCCAGACACGGTCTTACAC-TAAA--TCAACTACGAG
*
22954268 GCCTGTGTCCTAGACACGGTCTTACA
1 GCCTGTGTCCCAGACACGGTCTTACA
22954294 TGATGCCTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
42 23 0.40
43 28 0.49
44 2 0.04
45 4 0.07
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (42 bp):
GCCTGTGTCCCAGACACGGTCTTACACTAAATCAACTACGAG
Found at i:22959637 original size:49 final size:49
Alignment explanation
Indices: 22959564--22959810 Score: 325
Period size: 49 Copynumber: 5.0 Consensus size: 49
22959554 GTAGCCGAAG
* *
22959564 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
22959613 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
* * * *
22959663 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * * *
22959713 GTTAT-TAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
22959763 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACATACGTGACCA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCA
22959811 CACAATAGCT
Statistics
Matches: 170, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 83 0.49
50 50 0.29
51 37 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:22959751 original size:101 final size:98
Alignment explanation
Indices: 22959578--22959808 Score: 347
Period size: 100 Copynumber: 2.3 Consensus size: 98
22959568 CTGGTACGCA
* *
22959578 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCTGGTACACATAGTAGCCTGCACTTA
* *
22959643 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACAATCTGATACACG
*
22959677 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAT-TAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCT-GGTACACATAGTAGCCTGCAC
* *
22959741 TTAGTACTACACATGCGACCAACAATCTGGTACACG
63 TTAGTACTACACACGCGACCAACAATCTGATACACG
*
22959777 TAGTAGCCTGCACTTAGTACTACATACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
22959809 CACACAATAG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
99 31 0.26
100 48 0.40
101 42 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTGATACACG
Found at i:22960491 original size:30 final size:30
Alignment explanation
Indices: 22960457--22960516 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22960447 CTTTAATACG
22960457 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
22960487 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
22960517 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:22963313 original size:39 final size:39
Alignment explanation
Indices: 22963262--22963420 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
22963252 ATTATATTAT
* * * *
22963262 CAGCACAAAGCCTGCGTGACTTTAGCTCGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
*
22963301 CTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
22963340 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
** * *
22963379 CAGCACGAAGCCTGTGGAACTTTAGCCCAGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
22963418 CAG
1 CAG
22963421 TATCTTGCAT
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
Found at i:22966745 original size:15 final size:15
Alignment explanation
Indices: 22966721--22966759 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
22966711 AATAGAGAAG
22966721 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
22966737 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
22966752 CCATGATA
1 CCAAGATA
22966760 CGAAAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:22969559 original size:49 final size:49
Alignment explanation
Indices: 22969506--22969732 Score: 240
Period size: 49 Copynumber: 4.6 Consensus size: 49
22969496 CTGGTACGCA
* *
22969506 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTC-GGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA-TCGGGTACACG
* * ** * *
22969555 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCGGGTACACG
* * * * *
22969605 TAGTAGCCTGCACTTAGTACTAAACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACG
* * **
22969656 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACG
**
22969705 TAGTAGCCTAAACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
22969733 GAGACACACT
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 68 0.46
50 43 0.29
51 36 0.24
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACG
Found at i:22969680 original size:101 final size:98
Alignment explanation
Indices: 22969506--22969732 Score: 251
Period size: 100 Copynumber: 2.3 Consensus size: 98
22969496 CTGGTACGCA
* ** * *
22969506 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACATGTAGTAGCTTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACATAGTAGCCTACACTTA
* *
22969571 GTACTACACACGTGACCTAACCAT-CTGATACACG
66 GTACTACACACGCGACC-AACCATCCAG-TACACG
* * * *
22969605 TAGTAGCCTGCACTTAGTACTAAACACGTGATCGAAGTTA-TCGGGTACGCATAGTAGCCTACAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATTC-GGTACACATAGTAGCCTACAC
* **
22969669 TTAGTACTACACATGCGACCAATTATCCAGTACACG
63 TTAGTACTACACACGCGACCAACCATCCAGTACACG
**
22969705 TAGTAGCCTAAACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
22969733 GAGACACACT
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
99 28 0.26
100 40 0.37
101 39 0.36
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCAACCATCCAGTACACG
Found at i:22972417 original size:33 final size:34
Alignment explanation
Indices: 22972346--22972417 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
22972336 AACAGTGCAT
* * *
22972346 ACAGTAAAGGTCTGAGCCTGAGCCCTATTCATTA
1 ACAGTAAAGGTCTGAGCCTAAGCCCTATGCAGTA
* * *
22972380 ACAGTACA-GTCTGGGCCTAAGCCCTATGCAGTC
1 ACAGTAAAGGTCTGAGCCTAAGCCCTATGCAGTA
22972413 ACAGT
1 ACAGT
22972418 GTGGGCCTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (34 bp):
ACAGTAAAGGTCTGAGCCTAAGCCCTATGCAGTA
Found at i:22972439 original size:28 final size:27
Alignment explanation
Indices: 22972379--22972440 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
22972369 CCTATTCATT
*
22972379 AACAGTACAGTCTGGGCCTAAGCCCTA
1 AACAGTACAGTCTGGGCCTAAGCCCAA
** * *
22972406 TGCAGTCACAGTGTGGGCCTATGCCCAA
1 AACAGT-ACAGTCTGGGCCTAAGCCCAA
22972434 AACAGTA
1 AACAGTA
22972441 TAATCACAGT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.19
Consensus pattern (27 bp):
AACAGTACAGTCTGGGCCTAAGCCCAA
Found at i:22972578 original size:23 final size:23
Alignment explanation
Indices: 22972559--22972613 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
22972549 ATTGCAGTGT
22972559 AGCTACTAATAGTAACGCAGCAA
1 AGCTACTAATAGTAACGCAGCAA
*
22972582 AGCTGCTAATAGTAACGCAGCAA
1 AGCTACTAATAGTAACGCAGCAA
*
22972605 AGCTGCTAA
1 AGCTACTAA
22972614 GAGCGGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (23 bp):
AGCTACTAATAGTAACGCAGCAA
Found at i:22982132 original size:47 final size:47
Alignment explanation
Indices: 22982078--22982172 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
22982068 GAGTTAAATG
22982078 TGTTATATCATGAACTTACTAAGCTTTAAAGCTTACTTGTGAAATTT
1 TGTTATATCATGAACTTACTAAGCTTTAAAGCTTACTTGTGAAATTT
22982125 TGTTATATCATGAACTTACTAAGCTTTAAAGCTTACTTGTGAAATTT
1 TGTTATATCATGAACTTACTAAGCTTTAAAGCTTACTTGTGAAATTT
22982172 T
1 T
22982173 CTCTATTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (47 bp):
TGTTATATCATGAACTTACTAAGCTTTAAAGCTTACTTGTGAAATTT
Found at i:22985688 original size:23 final size:23
Alignment explanation
Indices: 22985640--22985688 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
22985630 CCCTAAGTTA
* *
22985640 GCCCTATAAACTCATGTCTGTGG
1 GCCCCATAAACTCATGTCTATGG
*
22985663 GCCCCATAAACTCATGTCTATTG
1 GCCCCATAAACTCATGTCTATGG
22985686 GCC
1 GCC
22985689 TCAACATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (23 bp):
GCCCCATAAACTCATGTCTATGG
Found at i:22987214 original size:22 final size:22
Alignment explanation
Indices: 22987159--22987248 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 22
22987149 CAAAGTTTCT
* *
22987159 TATCATATATCATATCAGAGTCA
1 TATCATATAACATATCAAAG-CA
*
22987182 TAAT-ATGTAACATATCAAAGCA
1 T-ATCATATAACATATCAAAGCA
*
22987204 TATCATATAACTTATCAGAA-CA
1 TATCATATAACATATCA-AAGCA
* * * *
22987226 TAACACATAACATAGCAGAGCA
1 TATCATATAACATATCAAAGCA
22987248 T
1 T
22987249 GTCCTACCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
21 3 0.06
22 32 0.60
23 16 0.30
24 2 0.04
ACGTcount: A:0.46, C:0.18, G:0.09, T:0.28
Consensus pattern (22 bp):
TATCATATAACATATCAAAGCA
Done.