Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 74 of 332
Found at i:22992449 original size:12 final size:12
Alignment explanation
Indices: 22992432--22992456 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22992422 TATGTATGTT
22992432 TGAAAATTTTTA
1 TGAAAATTTTTA
22992444 TGAAAATTTTTA
1 TGAAAATTTTTA
22992456 T
1 T
22992457 TTACTGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:23014289 original size:38 final size:38
Alignment explanation
Indices: 23014238--23014318 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
23014228 TAAAACCAAG
*
23014238 ATAAACATAACTCATTCTTATGATGACCGAATTCAAAT
1 ATAAACATAACTCATACTTATGATGACCGAATTCAAAT
23014276 ATAAACATAACTCATACTTATGATGACCGAATTCAAAT
1 ATAAACATAACTCATACTTATGATGACCGAATTCAAAT
23014314 ATAAA
1 ATAAA
23014319 AGTTTAGCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (38 bp):
ATAAACATAACTCATACTTATGATGACCGAATTCAAAT
Found at i:23014518 original size:17 final size:17
Alignment explanation
Indices: 23014496--23014538 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
23014486 AATCTATAAA
23014496 ACAGAGTAACATAATAC
1 ACAGAGTAACATAATAC
23014513 ACAGAGTAACATAATAC
1 ACAGAGTAACATAATAC
23014530 ACAGAGTAA
1 ACAGAGTAA
23014539 GCTACCACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.53, C:0.16, G:0.14, T:0.16
Consensus pattern (17 bp):
ACAGAGTAACATAATAC
Found at i:23019726 original size:39 final size:40
Alignment explanation
Indices: 23019649--23019795 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
23019639 TAGCTCCTCG
* * *
23019649 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
23019689 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
23019728 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
23019768 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
23019796 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:23019835 original size:40 final size:40
Alignment explanation
Indices: 23019692--23019822 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
23019682 TAACTCATTC
* *
23019692 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
23019732 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23019772 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23019812 AATACCTTCGG
1 AATGCCTTCGG
23019823 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:23019835 original size:80 final size:80
Alignment explanation
Indices: 23019695--23019875 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
23019685 CTCATTCAAT
* * *
23019695 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
23019759 AGT-A-TCTCGCACAAA
65 AGTCACT-TAGAACAAA
**
23019774 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
23019837 ATAGTCACTTAGAACAAA
63 ATAGTCACTTAGAACAAA
*
23019855 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23019876 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.81
81 9 0.10
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGAACAAA
Found at i:23021594 original size:21 final size:21
Alignment explanation
Indices: 23021568--23021609 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23021558 TTTCAAAAGA
23021568 GTAGTTAAGAATATCATGTAT
1 GTAGTTAAGAATATCATGTAT
23021589 GTAGTTAAGAATATCATGTAT
1 GTAGTTAAGAATATCATGTAT
23021610 ATAATCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
GTAGTTAAGAATATCATGTAT
Found at i:23023490 original size:25 final size:25
Alignment explanation
Indices: 23023462--23023523 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
23023452 CAGCTCGTGT
* *
23023462 GAGCTTACCGTTATTCAACTCGGAG
1 GAGCTTACCATTATTCAACTCAGAG
* *
23023487 GAGCATACCATTATTCAACTTAGAG
1 GAGCTTACCATTATTCAACTCAGAG
23023512 GAGCTTACCATT
1 GAGCTTACCATT
23023524 TACAGCTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GAGCTTACCATTATTCAACTCAGAG
Found at i:23023548 original size:24 final size:24
Alignment explanation
Indices: 23023512--23023563 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
23023502 CAACTTAGAG
23023512 GAGCTTACCATTTACAGCTCGTAA
1 GAGCTTACCATTTACAGCTCGTAA
* * *
23023536 GAGC-TACCGATTTAGAGCTTGTAT
1 GAGCTTACC-ATTTACAGCTCGTAA
23023560 GAGC
1 GAGC
23023564 ATACATGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
GAGCTTACCATTTACAGCTCGTAA
Found at i:23024315 original size:64 final size:64
Alignment explanation
Indices: 23024236--23024364 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
23024226 ATCAAGGACT
23024236 TAGTTTCCCTTTTCAGCCAAATCTTGAAATTTTCTTCCAAGGCGAAATTTTAAGAAATACTTTA
1 TAGTTTCCCTTTTCAGCCAAATCTTGAAATTTTCTTCCAAGGCGAAATTTTAAGAAATACTTTA
23024300 TAGTTTCCCTTTTCAGCCAAATCTTGAAATTTTCTTCCAAGGCGAAATTTTAAGAAATACTTTA
1 TAGTTTCCCTTTTCAGCCAAATCTTGAAATTTTCTTCCAAGGCGAAATTTTAAGAAATACTTTA
23024364 T
1 T
23024365 CGCCAACAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.40
Consensus pattern (64 bp):
TAGTTTCCCTTTTCAGCCAAATCTTGAAATTTTCTTCCAAGGCGAAATTTTAAGAAATACTTTA
Found at i:23029745 original size:29 final size:29
Alignment explanation
Indices: 23029713--23029779 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
23029703 AATCGTATTC
* *
23029713 ATATGGCCCACTAGGCCCAAATCACCTGT
1 ATATGGCCCACTAGGCCCAAATCACATCT
* * *
23029742 ATATGCCCCATTAGGCCCAAATCAGATCT
1 ATATGGCCCACTAGGCCCAAATCACATCT
23029771 ATATGGCCC
1 ATATGGCCC
23029780 GTTCGGCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.22
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACATCT
Found at i:23029787 original size:29 final size:29
Alignment explanation
Indices: 23029713--23029789 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
23029703 AATCGTATTC
* * * *
23029713 ATATGGCCCACTAGGCCCAAATCACCTGT
1 ATATGCCCCATTAGGCCCAAATCACATCT
*
23029742 ATATGCCCCATTAGGCCCAAATCAGATCT
1 ATATGCCCCATTAGGCCCAAATCACATCT
* * *
23029771 ATATGGCCCGTTCGGCCCA
1 ATATGCCCCATTAGGCCCA
23029790 GTCACATTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.22
Consensus pattern (29 bp):
ATATGCCCCATTAGGCCCAAATCACATCT
Found at i:23030626 original size:19 final size:21
Alignment explanation
Indices: 23030585--23030632 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
23030575 TAAGTGAAAC
23030585 AAAGAAAATTGTGTAGAGAAGA
1 AAAG-AAATTGTGTAGAGAAGA
*
23030607 ATAGAAATTG-GTAG-GAAGA
1 AAAGAAATTGTGTAGAGAAGA
23030626 AAAGAAA
1 AAAGAAA
23030633 GAAAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 4 0.17
21 6 0.25
22 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.17
Consensus pattern (21 bp):
AAAGAAATTGTGTAGAGAAGA
Found at i:23031970 original size:27 final size:26
Alignment explanation
Indices: 23031922--23032053 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 26
23031912 GCGAGGCTGC
* * *
23031922 CAGATATTGTGACAAAGTCACCAGAT
1 CAGATATTGTGGCAGAGCCACCAGAT
*
23031948 ACAGATACTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
* *
23031975 CAGATAATTGTGGCATAGCCACCTGGA-
1 CAGAT-ATTGTGGCAGAGCCACC-AGAT
23032002 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
23032029 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
23032054 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.10
27 77 0.86
28 4 0.04
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:23032016 original size:54 final size:53
Alignment explanation
Indices: 23031922--23032056 Score: 191
Period size: 54 Copynumber: 2.5 Consensus size: 53
23031912 GCGAGGCTGC
* * * * *
23031922 CAGAT-ATTGTGACAAAGTCACCAGATACAGATACTGTGGCAGAGCCACCAGAT
1 CAGATAATTGTGGCATAGCCACCAG-GACAGATAATGTGGCAGAGCCACCAGAT
*
23031975 CAGATAATTGTGGCATAGCCACCTGGACAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAATTGTGGCATAGCCACCAGGACAGATA-ATGTGGCAGAGCCACCAGAT
23032029 CAGATAATTGTGGCATAGCCACCAGGAC
1 CAGATAATTGTGGCATAGCCACCAGGAC
23032057 GCTTCCTCCA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 12 0.16
54 61 0.84
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.19
Consensus pattern (53 bp):
CAGATAATTGTGGCATAGCCACCAGGACAGATAATGTGGCAGAGCCACCAGAT
Found at i:23033688 original size:26 final size:26
Alignment explanation
Indices: 23033651--23033755 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
23033641 AATTCCCATT
*
23033651 ATGGAACTTTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
23033677 ATGGAACATTTACTTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
23033703 ATGAAACATTTACCTAACCCTTTATC
1 ATGGAACATTTACCTAACCCATTATC
23033729 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
23033755 A
1 A
23033756 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:23039953 original size:27 final size:27
Alignment explanation
Indices: 23039905--23040063 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
23039895 GCAAGGTTGC
* * *
23039905 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
23039932 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
23039958 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
23039985 CAGATAATTATGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
**
23040012 CAGATATATGTGGCAGAGCCACTTGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
23040039 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
23040064 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:23040064 original size:54 final size:54
Alignment explanation
Indices: 23039905--23040066 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
23039895 GCAAGGTTGC
* * * * *
23039905 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
23039958 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTATGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
**
23040012 CAGATATATGTGGCAGAGCCACTTGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
23040066 C
1 C
23040067 GCTTCCTCCA
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 12 0.12
54 86 0.88
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:23041687 original size:26 final size:26
Alignment explanation
Indices: 23041657--23041764 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
23041647 ATAAATTCCC
23041657 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23041683 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23041709 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23041735 ATCATGGAACATTTAGCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23041761 ATCA
1 ATCA
23041765 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23042302 original size:9 final size:9
Alignment explanation
Indices: 23042288--23042319 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
23042278 AAGTTCAGGC
23042288 TTTTGGGAT
1 TTTTGGGAT
23042297 TTTTGGG--
1 TTTTGGGAT
23042304 TTTTGGGAT
1 TTTTGGGAT
23042313 TTTTGGG
1 TTTTGGG
23042320 GCGTTACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.06, C:0.00, G:0.38, T:0.56
Consensus pattern (9 bp):
TTTTGGGAT
Found at i:23042309 original size:16 final size:16
Alignment explanation
Indices: 23042288--23042319 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23042278 AAGTTCAGGC
23042288 TTTTGGGATTTTTGGG
1 TTTTGGGATTTTTGGG
23042304 TTTTGGGATTTTTGGG
1 TTTTGGGATTTTTGGG
23042320 GCGTTACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.38, T:0.56
Consensus pattern (16 bp):
TTTTGGGATTTTTGGG
Found at i:23042920 original size:100 final size:100
Alignment explanation
Indices: 23042781--23042976 Score: 320
Period size: 100 Copynumber: 2.0 Consensus size: 100
23042771 AGGAAGGATC
* * * *
23042781 AAATTGCATAAAAGGCAAAAGTTGAGTTCTAGTATTTATAAGTATCAAATAGCTATGGAATTCAA
1 AAATTGAATAAAAGGCAAAAATTGAGTTCTAGTAGTTATAAGTATCAAATACCTATGGAATTCAA
*
23042846 AATTTGAGGTCCTTAAATGGTAATTAGACCAAACA
66 AATTTAAGGTCCTTAAATGGTAATTAGACCAAACA
* *
23042881 AAATTGAATAAAATGCAAAAATTGAGTTCTAGTAGTTATATGTATCAAATACCTATGGAATTCAA
1 AAATTGAATAAAAGGCAAAAATTGAGTTCTAGTAGTTATAAGTATCAAATACCTATGGAATTCAA
*
23042946 AATTTAAGGTCCTTATATGGTAATTAGACCA
66 AATTTAAGGTCCTTAAATGGTAATTAGACCA
23042977 TTAAGAAAAG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (100 bp):
AAATTGAATAAAAGGCAAAAATTGAGTTCTAGTAGTTATAAGTATCAAATACCTATGGAATTCAA
AATTTAAGGTCCTTAAATGGTAATTAGACCAAACA
Found at i:23043365 original size:16 final size:16
Alignment explanation
Indices: 23043341--23043371 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23043331 GATAAACAAC
23043341 TTCTAATTTTTATGAT
1 TTCTAATTTTTATGAT
*
23043357 TTCTGATTTTTATGA
1 TTCTAATTTTTATGA
23043372 AATATATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.06, G:0.10, T:0.61
Consensus pattern (16 bp):
TTCTAATTTTTATGAT
Found at i:23044060 original size:25 final size:24
Alignment explanation
Indices: 23044032--23044084 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
23044022 CACAAACGTA
*
23044032 GCTCTTTATGAGCATCCTGATATAG
1 GCTCTTTATGAGCATCCTGACAT-G
* *
23044057 GCTCTTTGTGAGCTTCCTGACATG
1 GCTCTTTATGAGCATCCTGACATG
23044081 GCTC
1 GCTC
23044085 ACTTGAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCTGACATG
Found at i:23055267 original size:18 final size:18
Alignment explanation
Indices: 23055253--23055293 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
23055243 CTCTATCACT
*
23055253 TCATATACATATATCTTA
1 TCATATACATATATCCTA
*
23055271 TCATATACATATAT-ATA
1 TCATATACATATATCCTA
23055288 TCATAT
1 TCATAT
23055294 CAATCCATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (18 bp):
TCATATACATATATCCTA
Found at i:23058260 original size:29 final size:30
Alignment explanation
Indices: 23058218--23058308 Score: 120
Period size: 28 Copynumber: 3.2 Consensus size: 30
23058208 ACATGGCTTG
*
23058218 GAAT-TGATTCGGG-CTAGATGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
23058246 GAATGTGATTTGGGCCTA-ATGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
23058275 GAATGAGA-TTGGGCCTAG-TGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
23058303 GCATGT
1 GAATGT
23058309 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
28 27 0.48
29 26 0.46
30 3 0.05
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (30 bp):
GAATGTGATTTGGGCCTAGATGGGCCATAT
Found at i:23058296 original size:28 final size:28
Alignment explanation
Indices: 23058223--23058303 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 28
23058213 GCTTGGAATT
*
23058223 GATTCGGG-CTAGATGGGCCATATGAATGT
1 GATT-GGGCCTAG-TGGGCCATATGAATGA
*
23058252 GATTTGGGCCTAATGGGCCATATGAATGA
1 GA-TTGGGCCTAGTGGGCCATATGAATGA
23058281 GATTGGGCCTAGTGGGCCATATG
1 GATTGGGCCTAGTGGGCCATATG
23058304 CATGTATGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
28 20 0.43
29 22 0.47
30 5 0.11
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATGAATGA
Found at i:23061032 original size:27 final size:27
Alignment explanation
Indices: 23061002--23061175 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
23060992 ATATTGAGTC
* * *
23061002 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
23061029 CGCACACTTAGTGCTACGTAATC-A-T
1 CGCACACTTAGTGCTACATAGTCAACT
23061054 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
23061081 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
23061108 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
23061134 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
23061161 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23061176 GTACAATTTA
Statistics
Matches: 128, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
25 22 0.17
26 25 0.20
27 81 0.63
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:23061147 original size:53 final size:53
Alignment explanation
Indices: 23061002--23061175 Score: 201
Period size: 52 Copynumber: 3.3 Consensus size: 53
23060992 ATATTGAGTC
* * * * * *
23061002 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATC-AT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAT
* *
23061054 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAA-T
* **
23061108 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTC-AAT
23061161 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23061176 GTACAATTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
52 43 0.41
53 42 0.40
54 20 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAT
Found at i:23077841 original size:21 final size:22
Alignment explanation
Indices: 23077817--23077862 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
23077807 TTATTCAATA
*
23077817 AAAATTATAA-AAACTAAAATG
1 AAAATAATAATAAACTAAAATG
*
23077838 AAAATAATAATAAAGTAAAATG
1 AAAATAATAATAAACTAAAATG
23077860 AAA
1 AAA
23077863 TAAAAAGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (22 bp):
AAAATAATAATAAACTAAAATG
Found at i:23083122 original size:73 final size:73
Alignment explanation
Indices: 23083003--23083150 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
23082993 GCAATAAATG
* *
23083003 TAAAATGGCTAAAGTAATAAAAATGGAGTGTTCCTAATATCCTAGTTCCCTGGCAACGGTGCCAA
1 TAAAATGGCTAAAGTAATAAAAATCGAGTGTTCCTAATATCCTAGTTCCCTGGCAACGGCGCCAA
23083068 AAACTTGA
66 AAACTTGA
23083076 TAAAATGGCTAAAGTAATAAAAATCGAGTGTTCCTAATATCCTAGTTCCCTGGCAACGGCGCCAA
1 TAAAATGGCTAAAGTAATAAAAATCGAGTGTTCCTAATATCCTAGTTCCCTGGCAACGGCGCCAA
23083141 AAACTTGA
66 AAACTTGA
23083149 TA
1 TA
23083151 CGTGATATTC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (73 bp):
TAAAATGGCTAAAGTAATAAAAATCGAGTGTTCCTAATATCCTAGTTCCCTGGCAACGGCGCCAA
AAACTTGA
Found at i:23088992 original size:56 final size:56
Alignment explanation
Indices: 23088920--23089108 Score: 279
Period size: 56 Copynumber: 3.4 Consensus size: 56
23088910 TCCCATACAG
* * * **
23088920 GGTCTTACTTACACACATTTATTGGAGTCACATAAAGATGCCAACGTATAAAACGT
1 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
*
23088976 GGTTTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
* * * *
23089032 GGTCTTACTCGCACACATATATCGAAGTCATATATCGATGCCAACATATAAAACGT
1 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
*
23089088 GGTCTTACTCACACACGTATA
1 GGTCTTACTCACACACATATA
23089109 CCAATGCCAT
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 120 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:23094630 original size:23 final size:24
Alignment explanation
Indices: 23094580--23094632 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
23094570 CTTGTAACGC
*
23094580 GAAGCTAATAAAGAGCCATTTCGG
1 GAAGCTAATAAAGAGCCATATCGG
*
23094604 GAAGCTCATAAAGAGCC-TATCGG
1 GAAGCTAATAAAGAGCCATATCGG
23094627 GAAGCT
1 GAAGCT
23094633 TATCCTGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (24 bp):
GAAGCTAATAAAGAGCCATATCGG
Found at i:23097150 original size:40 final size:40
Alignment explanation
Indices: 23097088--23097305 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
23097078 AAGCCAAGTA
* * * *
23097088 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
23097127 CCTTCGGGACATAGCCCGGATATAGTAACCCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23097167 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23097207 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
23097247 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
23097287 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23097306 TTATCATCCG
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 147 0.92
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23102168 original size:47 final size:47
Alignment explanation
Indices: 23102070--23102187 Score: 128
Period size: 47 Copynumber: 2.5 Consensus size: 47
23102060 ATTGATAAGT
* * * **
23102070 ACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAGAGT
1 ACCTATATCATGGCCCGTAGCCAAATCAAGATAACTCATCCCAGAAA
* * * * *
23102117 ACCTATATCATGGCCTGTAGCCCAATCAAGATAACTCCTCTCTGAAA
1 ACCTATATCATGGCCCGTAGCCAAATCAAGATAACTCATCCCAGAAA
* *
23102164 ACCTATATCACGGCCCGAAGCCAA
1 ACCTATATCATGGCCCGTAGCCAA
23102188 TACATTAACC
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.21
Consensus pattern (47 bp):
ACCTATATCATGGCCCGTAGCCAAATCAAGATAACTCATCCCAGAAA
Found at i:23108646 original size:24 final size:24
Alignment explanation
Indices: 23108591--23108674 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
23108581 GGCTATATAA
* * *
23108591 CGGGAAGCTCATAAAAAGCCATAAT
1 CGGGAAGTTCACAAAAAACCAT-AT
* * *
23108616 CAGGAAGTTCACAAAGAACCTTAT
1 CGGGAAGTTCACAAAAAACCATAT
*
23108640 CTGGAAGTTCACAAAAAACCATAT
1 CGGGAAGTTCACAAAAAACCATAT
23108664 CGGGAAGTTCA
1 CGGGAAGTTCA
23108675 AACGAGCATT
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
24 33 0.67
25 16 0.33
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (24 bp):
CGGGAAGTTCACAAAAAACCATAT
Found at i:23113982 original size:47 final size:47
Alignment explanation
Indices: 23113725--23113988 Score: 186
Period size: 47 Copynumber: 5.6 Consensus size: 47
23113715 TTTGTGTGAT
* *
23113725 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATT--ATGAAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATC-A--ACATTACATGAGAGCC
* * * * * *
23113771 AATGTAAGACCATGTCTGGGACATGGCATCATCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACATT-ACATGAGAGCC
* * *
23113819 AGTGTAAGA-AATGTCTAGGACAT-GCATCAAC--TACATGATGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACATTACATGA-GAGCC
** * * * * **
23113863 AGCATAAGACCATGTCTAGGACATGGCATCGGCACGAATACGTGGGAGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATC--AAC-ATTACATGAGAGCC
* * *
23113913 AGTGTAAGACCATGTTTGGGACATGGCATCAAC-TTGACATGAGAACC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACATT-ACATGAGAGCC
23113960 AGTGTAAGACCATGTCTAGGACATGGCAT
1 AGTGTAAGACCATGTCTAGGACATGGCAT
23113989 TGGCATTATA
Statistics
Matches: 169, Mismatches: 35, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
43 4 0.02
44 10 0.06
45 17 0.10
46 21 0.12
47 60 0.36
48 23 0.14
50 29 0.17
51 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAACATTACATGAGAGCC
Found at i:23115156 original size:21 final size:22
Alignment explanation
Indices: 23115117--23115157 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
23115107 TCGAATTGGT
*
23115117 CACACGGGTGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
23115139 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
23115158 GTATCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:23116118 original size:26 final size:26
Alignment explanation
Indices: 23116089--23116198 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
23116079 TGGTACAAAT
23116089 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
23116115 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23116141 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23116167 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23116193 TGATAA
1 TGATAA
23116199 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23117849 original size:27 final size:27
Alignment explanation
Indices: 23117811--23117904 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
23117801 GAGGAAGCGT
23117811 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23117838 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
23117865 TCTGGTGGCTCTGCCACGATTATTTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
*
23117893 TCTGGTGACTCT
1 TCTGGTGGCTCT
23117905 ATCACATTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 47 0.81
28 11 0.19
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:23117916 original size:54 final size:54
Alignment explanation
Indices: 23117809--23117923 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
23117799 TGGAGGAAGC
* *
23117809 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
* * * *
23117863 GTTCTGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTATCACAT-TATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCT
23117917 GTTCTGG
1 GTTCTGG
23117924 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
Found at i:23123892 original size:38 final size:38
Alignment explanation
Indices: 23123836--23123915 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
23123826 GATGTGTATT
* * *
23123836 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
23123874 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
23123912 CGGG
1 CGGG
23123916 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:23123962 original size:43 final size:43
Alignment explanation
Indices: 23123887--23124104 Score: 252
Period size: 43 Copynumber: 5.4 Consensus size: 43
23123877 GATAAATCCC
* * *
23123887 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
23123928 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
23123971 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT-
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
23124013 --AGGCTTCGTGCC--T-A---G----CAGG-CTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
23124043 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
23124086 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
23124105 AATGATATGT
Statistics
Matches: 152, Mismatches: 9, Indels: 30
0.80 0.05 0.16
Matches are distributed among these distances:
29 10 0.07
30 3 0.02
32 12 0.08
34 2 0.01
35 1 0.01
37 1 0.01
38 2 0.01
40 11 0.07
41 15 0.10
42 5 0.03
43 90 0.59
ACGTcount: A:0.12, C:0.25, G:0.34, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:23124021 original size:13 final size:13
Alignment explanation
Indices: 23124003--23124043 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 13
23123993 GTATTCGGGC
23124003 CTTCGTGCCTAGG
1 CTTCGTGCCTAGG
23124016 CTTCGTGCCTAGCAGG
1 CTTCGTGCCT---AGG
23124032 CTTCGTGCCTAG
1 CTTCGTGCCTAG
23124044 CAGGCTTCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 12 0.48
16 13 0.52
ACGTcount: A:0.10, C:0.32, G:0.29, T:0.29
Consensus pattern (13 bp):
CTTCGTGCCTAGG
Found at i:23124034 original size:16 final size:16
Alignment explanation
Indices: 23124013--23124056 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
23124003 CTTCGTGCCT
23124013 AGGCTTCGTGCCTAGC
1 AGGCTTCGTGCCTAGC
23124029 AGGCTTCGTGCCTAGC
1 AGGCTTCGTGCCTAGC
23124045 AGGCTTCGTGCC
1 AGGCTTCGTGCC
23124057 GGTGATGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.25
Consensus pattern (16 bp):
AGGCTTCGTGCCTAGC
Found at i:23130087 original size:93 final size:93
Alignment explanation
Indices: 23129981--23130152 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23129971 GCCCATAAGT
* * *
23129981 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23130046 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
23130074 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23130139 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
23130153 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23130148 original size:46 final size:46
Alignment explanation
Indices: 23129973--23130148 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
23129963 TGTAACCCGC
* * *
23129973 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23130019 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
23130065 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23130112 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23130149 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 70 0.64
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:23135578 original size:46 final size:45
Alignment explanation
Indices: 23135511--23135685 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
23135501 TGTAACCCGC
23135511 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
23135557 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
23135603 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
23135650 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
23135686 ATGCCCAAAC
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:23135631 original size:93 final size:93
Alignment explanation
Indices: 23135519--23135690 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
23135509 GCCCATAAGT
* * *
23135519 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23135584 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
23135612 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23135677 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
23135691 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23135705 original size:46 final size:46
Alignment explanation
Indices: 23135516--23135705 Score: 133
Period size: 46 Copynumber: 4.1 Consensus size: 46
23135506 CCCGCCCATA
** *
23135516 AGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT-ACATCC-T
* *
23135561 AAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CT
* * * * * * *
23135611 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTC-G-GATGCCCATACATCCT
* *
23135655 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
23135701 AGTGA
1 AGTGA
23135706 CATGTCACTT
Statistics
Matches: 112, Mismatches: 20, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
44 8 0.07
45 1 0.01
46 61 0.54
47 28 0.25
48 2 0.02
49 5 0.04
50 5 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
Found at i:23137699 original size:43 final size:42
Alignment explanation
Indices: 23137625--23137800 Score: 248
Period size: 43 Copynumber: 4.1 Consensus size: 42
23137615 GTTAAATCCC
* *
23137625 GCAGGCTTCGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGC-GGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
23137666 GTAGGCTTAGTGTCGGTGATGTGTATTCAGGCCTTCGTGCCTA
1 GCAGGCTTAGTG-CGGTGATGTGTATTCGGGCCTTCGTGCCTA
23137709 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTG-CGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
23137752 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGC-GGTGATGTGTATTCGGGCCTTCGTGCCTA
*
23137795 TCAGGC
1 GCAGGC
23137801 GTAATGCCGG
Statistics
Matches: 122, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
41 13 0.11
42 4 0.03
43 105 0.86
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.32
Consensus pattern (42 bp):
GCAGGCTTAGTGCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:23140768 original size:27 final size:26
Alignment explanation
Indices: 23140720--23140771 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23140710 ACGAGGCTGC
*
23140720 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
23140746 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
23140772 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:23140818 original size:16 final size:16
Alignment explanation
Indices: 23140797--23140830 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23140787 TAGAATTCTT
23140797 CCTCCATCAATATAAA
1 CCTCCATCAATATAAA
23140813 CCTCCATCAATATAAA
1 CCTCCATCAATATAAA
23140829 CC
1 CC
23140831 CATGTCCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (16 bp):
CCTCCATCAATATAAA
Found at i:23141464 original size:27 final size:27
Alignment explanation
Indices: 23141432--23141601 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
23141422 AGGGAAAAAT
* * * *
23141432 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
23141459 GATAATTCTACCCTATAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
23141486 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
23141513 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
23141540 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
23141567 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
23141594 GGTAATTC
1 GGTAATTC
23141602 CACAACTTAT
Statistics
Matches: 120, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:23141598 original size:54 final size:54
Alignment explanation
Indices: 23141432--23141601 Score: 259
Period size: 54 Copynumber: 3.1 Consensus size: 54
23141422 AGGGAAAAAT
* * * *
23141432 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTAATTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
* * *
23141486 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
* *
23141540 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
23141594 GGTAATTC
1 GGTAATTC
23141602 CACAACTTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
Found at i:23149359 original size:30 final size:30
Alignment explanation
Indices: 23149323--23149382 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
23149313 AGTTAGTAGC
* *
23149323 GTAAGATTGGTTTTAATGTCTCGAATTGGT
1 GTAAGATTGGTTTTAATGCCTCGAACTGGT
23149353 GTAAGATTGGTTTTAATGCCTCGAACTGGT
1 GTAAGATTGGTTTTAATGCCTCGAACTGGT
23149383 TAGTAAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (30 bp):
GTAAGATTGGTTTTAATGCCTCGAACTGGT
Found at i:23155616 original size:21 final size:20
Alignment explanation
Indices: 23155591--23155633 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
23155581 AAATGTGAAA
*
23155591 TTCATTGAATTGAATATAAAT
1 TTCATTAAATTGAAT-TAAAT
*
23155612 TTCATTAAATTGAGTTAAAT
1 TTCATTAAATTGAATTAAAT
23155632 TT
1 TT
23155634 ACTCGTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (20 bp):
TTCATTAAATTGAATTAAAT
Found at i:23155829 original size:39 final size:39
Alignment explanation
Indices: 23155771--23155851 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
23155761 ATGAAATTGG
23155771 TTGAATATTTGATAATGCCCGACAAATGTTAAGTTTCGT
1 TTGAATATTTGATAATGCCCGACAAATGTTAAGTTTCGT
* **
23155810 TTGAATATTTGATACTGCCCGGTAAATGTTAAGTTTCGT
1 TTGAATATTTGATAATGCCCGACAAATGTTAAGTTTCGT
23155849 TTG
1 TTG
23155852 GTCAAATGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (39 bp):
TTGAATATTTGATAATGCCCGACAAATGTTAAGTTTCGT
Found at i:23157856 original size:10 final size:10
Alignment explanation
Indices: 23157841--23157885 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
23157831 ATTCTAAAAT
23157841 ATAAATACAA-
1 ATAAATA-AAG
23157851 ATAAATAAAG
1 ATAAATAAAG
*
23157861 ATAAATGAAG
1 ATAAATAAAG
*
23157871 ATAAATGAAG
1 ATAAATAAAG
23157881 ATAAA
1 ATAAA
23157886 AGCTAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
9 2 0.06
10 31 0.94
ACGTcount: A:0.67, C:0.02, G:0.11, T:0.20
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:23159539 original size:25 final size:23
Alignment explanation
Indices: 23159477--23159539 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
23159467 ACATGCAAGA
* *
23159477 AAATAAAGAAAATAGAAAATATT
1 AAATAAAAAAAATAAAAAATATT
*
23159500 AATATAAATATAAATAAAAAATATAT
1 AA-ATAAA-AAAAATAAAAAATAT-T
23159526 AAATAAAACAAAAT
1 AAATAAAA-AAAAT
23159540 CAGGTTGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
23 2 0.06
24 6 0.19
25 21 0.66
26 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (23 bp):
AAATAAAAAAAATAAAAAATATT
Found at i:23164911 original size:30 final size:30
Alignment explanation
Indices: 23164875--23164937 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
23164865 AGTTAAAGAA
23164875 TGGCATTTTGGTACCAAATGGTTTGTGTTT
1 TGGCATTTTGGTACCAAATGGTTTGTGTTT
23164905 TGGCATTTTGGTACCAAATGGTTTGTGTTT
1 TGGCATTTTGGTACCAAATGGTTTGTGTTT
23164935 TGG
1 TGG
23164938 TAAGTAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.16, C:0.10, G:0.29, T:0.46
Consensus pattern (30 bp):
TGGCATTTTGGTACCAAATGGTTTGTGTTT
Found at i:23178272 original size:16 final size:16
Alignment explanation
Indices: 23178251--23178309 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
23178241 GTAGATCGGC
* *
23178251 AAAAGCCGAATTGCCG
1 AAAAGCCGAAATGCCA
*
23178267 AAAAGCTGAAATGCCA
1 AAAAGCCGAAATGCCA
* *
23178283 AAAAGTCGAAATACCA
1 AAAAGCCGAAATGCCA
23178299 AAAAGCCGAAA
1 AAAAGCCGAAA
23178310 GTTTGACTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.51, C:0.20, G:0.19, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:23178604 original size:28 final size:29
Alignment explanation
Indices: 23178523--23178607 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
23178513 GAGCATGACT
* * * *
23178523 ATAAATGTAAATTGAGCCTGATGGGCCAT
1 ATAAATGTGAATTGGGCCTAATGGGCCAC
23178552 ATAAATGTGAATTGGGCCTAATGGGCCAC
1 ATAAATGTGAATTGGGCCTAATGGGCCAC
*
23178581 ATAAATGTG-ATTGGGCCTAGTGGGCCA
1 ATAAATGTGAATTGGGCCTAATGGGCCA
23178608 TATACAGGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 17 0.33
29 34 0.67
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (29 bp):
ATAAATGTGAATTGGGCCTAATGGGCCAC
Found at i:23180693 original size:16 final size:16
Alignment explanation
Indices: 23180672--23180724 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
23180662 GTAGATCGGC
23180672 AAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
* *
23180688 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCA
*
23180704 GAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
23180720 AAAAG
1 AAAAG
23180725 TCAAAAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.53, C:0.23, G:0.19, T:0.06
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:23181054 original size:28 final size:29
Alignment explanation
Indices: 23180943--23181061 Score: 213
Period size: 29 Copynumber: 4.1 Consensus size: 29
23180933 TGAGCATGAC
*
23180943 TATAAATGTGAATTGGGCCTGATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
23180972 TATAAATGTGAATTGGGCCTAATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
23181001 TATAAATGTGAATTGGGCCTAATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
*
23181030 TATAAATGTG-ATTGGGCCTAGTGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
23181058 TATA
1 TATA
23181062 CAGGTATGTG
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
28 21 0.24
29 67 0.76
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTAATGGGCCA
Found at i:23184877 original size:19 final size:19
Alignment explanation
Indices: 23184841--23184879 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23184831 TTTTCATCAT
* *
23184841 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
23184860 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
23184879 A
1 A
23184880 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:23185382 original size:55 final size:56
Alignment explanation
Indices: 23185317--23185431 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
23185307 AGCATGGCTG
* * *
23185317 CCAGATACAGA-AAATGTGACAGAGTCGCCAGATACAGATATTTTGTGGCA-ATGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCATA-GCCA
* * *
23185373 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
23185428 CCAG
1 CCAG
23185432 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
55 29 0.57
56 22 0.43
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:23185399 original size:27 final size:27
Alignment explanation
Indices: 23185344--23185431 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 27
23185334 GACAGAGTCG
*
23185344 CCAGATACAGATATTTTGTGGCAATGCCA
1 CCAGA-ACAGATA-TTTGTGGCAAAGCCA
* **
23185373 CCAGAACAGATATATGTGGCAGGGCCA
1 CCAGAACAGATATTTGTGGCAAAGCCA
*
23185400 CCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGAACAGAT-ATTTGTGGCAAAGCCA
23185428 CCAG
1 CCAG
23185432 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 23 0.44
28 24 0.46
29 5 0.10
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAAAGCCA
Found at i:23185427 original size:28 final size:27
Alignment explanation
Indices: 23185344--23185431 Score: 106
Period size: 27 Copynumber: 3.1 Consensus size: 27
23185334 GACAGAGTCG
*
23185344 CCAGATACAGATATTTTGTGGCAATGCCA
1 CCAGA-ACAGATAATTTGTGGCAA-GCCA
* *
23185373 CCAGAACAGAT-ATATGTGGCAGGGCCA
1 CCAGAACAGATAATTTGTGGCA-AGCCA
23185400 CCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAATTTGTGGCA-AGCCA
23185428 CCAG
1 CCAG
23185432 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 23 0.45
28 23 0.45
29 5 0.10
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATAATTTGTGGCAAGCCA
Found at i:23185584 original size:28 final size:28
Alignment explanation
Indices: 23185537--23185598 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
23185527 AAATTAACCC
*
23185537 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
23185565 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
23185593 TAGGGG
1 TAGGGG
23185599 CATTCTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:23186686 original size:12 final size:13
Alignment explanation
Indices: 23186667--23186699 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23186657 CGGTTCGGCT
23186667 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
23186680 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
23186692 ATGGAGAA
1 ATGGAGAA
23186700 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:23189446 original size:12 final size:12
Alignment explanation
Indices: 23189429--23189453 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23189419 CAATCTTTCG
23189429 AGGATCCACTCT
1 AGGATCCACTCT
23189441 AGGATCCACTCT
1 AGGATCCACTCT
23189453 A
1 A
23189454 ATCCCTCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (12 bp):
AGGATCCACTCT
Found at i:23192739 original size:19 final size:19
Alignment explanation
Indices: 23192703--23192741 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23192693 TTTTCATCAT
* *
23192703 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
23192722 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
23192741 A
1 A
23192742 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:23193245 original size:27 final size:27
Alignment explanation
Indices: 23193193--23193272 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
23193183 GTGACAGAGT
*
23193193 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
23193222 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
23193249 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
23193273 TAACAACCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.51
28 16 0.34
29 7 0.15
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:23193435 original size:28 final size:28
Alignment explanation
Indices: 23193388--23193452 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
23193378 AAATTAACCC
*
23193388 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
23193416 -ATGGGGTATAATGGTAATTTTGCATACA
1 TA-GGGGTATAAAGGTAATTTTGCATACA
23193444 TAGGGGTAT
1 TAGGGGTAT
23193453 TCTAGTACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 31 0.94
29 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:23194538 original size:12 final size:13
Alignment explanation
Indices: 23194519--23194551 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23194509 GGGTTCGGCT
23194519 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
23194532 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
23194544 ATGGAGAA
1 ATGGAGAA
23194552 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:23202588 original size:18 final size:18
Alignment explanation
Indices: 23202553--23202602 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
23202543 TTTAAAACTT
*
23202553 AAATTTTGA-AAACGTAA
1 AAATTTGGAGAAACGTAA
*
23202570 AAATTTGGAGAAACTTAA
1 AAATTTGGAGAAACGTAA
*
23202588 AAATTTGGTGAAACG
1 AAATTTGGAGAAACG
23202603 AGTTTTGATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.28
Consensus pattern (18 bp):
AAATTTGGAGAAACGTAA
Found at i:23202748 original size:20 final size:20
Alignment explanation
Indices: 23202723--23202761 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
23202713 CCCTTACATC
23202723 ATTACATAATTGAAACTTTG
1 ATTACATAATTGAAACTTTG
23202743 ATTACATAATTGAAACTTT
1 ATTACATAATTGAAACTTT
23202762 TCAAAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (20 bp):
ATTACATAATTGAAACTTTG
Found at i:23202860 original size:23 final size:24
Alignment explanation
Indices: 23202825--23202888 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 24
23202815 ATTCATGCGT
*
23202825 CAGAGAAT-CTTACTGTTCT-TGC
1 CAGAGAATATTTACTGTTCTATGC
*
23202847 CAGGGAATATTTACTGTT-TATGC
1 CAGAGAATATTTACTGTTCTATGC
* *
23202870 TAGAGAATATTTTCTGTTC
1 CAGAGAATATTTACTGTTC
23202889 ACTCGTCTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (24 bp):
CAGAGAATATTTACTGTTCTATGC
Found at i:23210617 original size:23 final size:23
Alignment explanation
Indices: 23210531--23210648 Score: 87
Period size: 23 Copynumber: 5.0 Consensus size: 23
23210521 GGAATTACCA
*
23210531 CAGCTTGTATGAGCTTACCGATGTTT
1 CAGCTCGTATGAGCTTA-C--TGTTT
* * * *
23210557 TAGCTCCTAAGAGCTTACTATTTT
1 CAGCTCGTATGAGCTTACT-GTTT
* *
23210581 TAGCTCAT-TGGAGCTTACTGTTT
1 CAGCTCGTAT-GAGCTTACTGTTT
*
23210604 CAGCTCGTATGAGCTTACCGTTT
1 CAGCTCGTATGAGCTTACTGTTT
*
23210627 CAGCTC-AATGGAGCTTACTGTT
1 CAGCTCGTAT-GAGCTTACTGTT
23210649 CATCTGCTCA
Statistics
Matches: 75, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
22 2 0.03
23 39 0.52
24 20 0.27
25 1 0.01
26 13 0.17
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.38
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGTTT
Found at i:23210618 original size:47 final size:46
Alignment explanation
Indices: 23210552--23210648 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 46
23210542 AGCTTACCGA
* * * *
23210552 TGTTTTAGCTCCTAAGAGCTTACTATTTTTAGCTCATTGGAGCTTAC
1 TGTTTCAGCTCCTAAGAGCTTAC-AGTTTCAGCTCAATGGAGCTTAC
* * *
23210599 TGTTTCAGCTCGTATGAGCTTACCGTTTCAGCTCAATGGAGCTTAC
1 TGTTTCAGCTCCTAAGAGCTTACAGTTTCAGCTCAATGGAGCTTAC
23210645 TGTT
1 TGTT
23210649 CATCTGCTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 23 0.53
47 20 0.47
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (46 bp):
TGTTTCAGCTCCTAAGAGCTTACAGTTTCAGCTCAATGGAGCTTAC
Found at i:23215565 original size:46 final size:46
Alignment explanation
Indices: 23215512--23215648 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
23215502 TATATATACA
* * ** * *
23215512 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
* * * *
23215558 CATCTCATACACGTTTTGCATTAGCCACTCGACTTTACCTCATATC
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
**
23215604 CATCTCATACACATTTTGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATAT
23215649 ATACACTTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
Found at i:23215693 original size:47 final size:47
Alignment explanation
Indices: 23215656--23215838 Score: 253
Period size: 47 Copynumber: 3.9 Consensus size: 47
23215646 TATATACACT
* * *
23215656 TCCACGTTCATCACATTGGCCATTCTACCTTATCACATATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
23215703 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
23215750 -CTCACATTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATG
1 TC-CACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
23215797 TTCATATTCATCACATTGGCCATTC-AGCCTTATCACACATAT
1 TCCACATTCATCACATTGGCCATTCGA-CCTTATCACACATAT
23215839 TCGGCCTTAT
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
47 122 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
Found at i:23215792 original size:94 final size:94
Alignment explanation
Indices: 23215662--23215838 Score: 300
Period size: 94 Copynumber: 1.9 Consensus size: 94
23215652 CACTTCCACG
* *
23215662 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
*
23215727 CGGCCTTATCACACATATGCATGCTCACA
66 CAGCCTTATCACACATATGCATGCTCACA
* * *
23215756 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
23215821 CAGCCTTATCACACATAT
66 CAGCCTTATCACACATAT
23215839 TCGGCCTTAT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 77 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (94 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
CAGCCTTATCACACATATGCATGCTCACA
Found at i:23215845 original size:19 final size:19
Alignment explanation
Indices: 23215818--23215857 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23215808 CACATTGGCC
23215818 ATTCAGCCTTATCACACAT
1 ATTCAGCCTTATCACACAT
* *
23215837 ATTCGGCCTTATCATACAT
1 ATTCAGCCTTATCACACAT
23215856 AT
1 AT
23215858 GCATGTTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (19 bp):
ATTCAGCCTTATCACACAT
Found at i:23215847 original size:66 final size:66
Alignment explanation
Indices: 23215771--23215904 Score: 232
Period size: 66 Copynumber: 2.0 Consensus size: 66
23215761 CACGTTGGCC
*
23215771 ATTCGGCCTTATCACACATATGCATGTTCATATTCATCACATTGGCCATTCAGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACA
23215836 T
66 T
* * *
23215837 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACA
23215902 T
66 T
23215903 AT
1 AT
23215905 GCATGCTCAC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACA
T
Found at i:23215894 original size:47 final size:47
Alignment explanation
Indices: 23215837--23215926 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
23215827 TATCACACAT
* *
23215837 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
*
23215884 ATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
23215927 AAAATCCTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
Found at i:23219922 original size:28 final size:28
Alignment explanation
Indices: 23219834--23219924 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
23219824 ACTGATTTCT
23219834 CACACATAGTGCTC-GATTGAAGAACTCG
1 CACACATAGTGCTCAG-TTGAAGAACTCG
** * * *
23219862 CACACATAGTGCCTCAACT-ACTGATCTGG
1 CACACATAGTG-CTCAGTTGA-AGAACTCG
* *
23219891 CACACATAGTGCTCAGTTGAAGAGCTTG
1 CACACATAGTGCTCAGTTGAAGAACTCG
23219919 CACACA
1 CACACA
23219925 CTGTGCCTCA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
28 28 0.57
29 21 0.43
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (28 bp):
CACACATAGTGCTCAGTTGAAGAACTCG
Found at i:23220012 original size:40 final size:40
Alignment explanation
Indices: 23219942--23220176 Score: 393
Period size: 40 Copynumber: 5.9 Consensus size: 40
23219932 TCATAATTCC
* *
23219942 AGCACGAATGC-CTTCGAGG-TTTAGCACGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* * *
23219981 AGCACAAATGCTCTTTGGGACTTAGCCCGGATATAACACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
23220021 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
23220061 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
23220101 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
23220141 AGCACGAATGCTCTTCGGAACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
23220177 AACTCTGAAT
Statistics
Matches: 185, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 12 0.06
40 173 0.94
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:23221738 original size:46 final size:46
Alignment explanation
Indices: 23221662--23221792 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 46
23221652 CAATATATAT
* * * * * *
23221662 ATACACATCTCACATTAGCCATTTGGCTTTACCACGTATCCATCTC
1 ATACACATTTCGCATTAGCCACTCGACTTTACCACATATCCATCTC
* * *
23221708 ATACACGTTTTGCATTAGCCACTCGACTTTACCTCATATCCATCTC
1 ATACACATTTCGCATTAGCCACTCGACTTTACCACATATCCATCTC
* * **
23221754 ATACACATTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 ATACACATTTCGCATTAGCCACTCGACTTTACCACATAT
23221793 ATACACTTCC
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.33
Consensus pattern (46 bp):
ATACACATTTCGCATTAGCCACTCGACTTTACCACATATCCATCTC
Found at i:23221837 original size:47 final size:47
Alignment explanation
Indices: 23221800--23221982 Score: 246
Period size: 47 Copynumber: 3.9 Consensus size: 47
23221790 TATATACACT
* * *
23221800 TCCACGTTCATCACATTGGCCATTCTACCTTATCACATATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
23221847 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
23221894 -CTCACATTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATG
1 TC-CACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
*
23221941 TTCACATT-ATTCACATTGGCCATTC-AGCCTTATCACACATAT
1 TCCACATTCA-TCACATTGGCCATTCGA-CCTTATCACACATAT
23221983 TCGGCCTTAT
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
46 1 0.01
47 121 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
Found at i:23221936 original size:94 final size:94
Alignment explanation
Indices: 23221806--23221982 Score: 293
Period size: 94 Copynumber: 1.9 Consensus size: 94
23221796 CACTTCCACG
* *
23221806 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCA-TCACATTGGCCAT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATT-ATTCACATTGGCCAT
*
23221870 TCGGCCTTATCACACATATGCATGCTCACA
65 TCAGCCTTATCACACATATGCATGCTCACA
* *
23221900 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTATTCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTATTCACATTGGCCATT
23221965 CAGCCTTATCACACATAT
66 CAGCCTTATCACACATAT
23221983 TCGGCCTTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
93 1 0.01
94 76 0.99
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (94 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTATTCACATTGGCCATT
CAGCCTTATCACACATATGCATGCTCACA
Found at i:23221989 original size:19 final size:19
Alignment explanation
Indices: 23221962--23222001 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23221952 CACATTGGCC
23221962 ATTCAGCCTTATCACACAT
1 ATTCAGCCTTATCACACAT
* *
23221981 ATTCGGCCTTATCATACAT
1 ATTCAGCCTTATCACACAT
23222000 AT
1 AT
23222002 GCATGTTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (19 bp):
ATTCAGCCTTATCACACAT
Found at i:23221991 original size:66 final size:66
Alignment explanation
Indices: 23221915--23222048 Score: 225
Period size: 66 Copynumber: 2.0 Consensus size: 66
23221905 CACGTTGGCC
23221915 ATTCGGCCTTATCACACATATGCATGTTCACATT-ATTCACATTGGCCATTCAGCCTTATCACAC
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCA-TCACATTGGCCATTCAGCCTTATCACAC
23221979 AT
65 AT
* * *
23221981 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACA
23222046 T
66 T
23222047 AT
1 AT
23222049 GCATGCTCAC
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 63 0.98
67 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACA
T
Found at i:23222034 original size:47 final size:47
Alignment explanation
Indices: 23221981--23222070 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
23221971 TATCACACAT
* *
23221981 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
*
23222028 ATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
23222071 AAAATCCTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
Found at i:23226034 original size:15 final size:15
Alignment explanation
Indices: 23226014--23226056 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
23226004 AAAATAATTT
*
23226014 AAAACTTAAATTTTG
1 AAAACTTAAATTTGG
23226029 AAAACTTCATAATTTGG
1 AAAACTT-A-AATTTGG
23226046 AGAAACTTAAA
1 A-AAACTTAAA
23226057 AATTTGGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 7 0.29
16 3 0.12
17 8 0.33
18 6 0.25
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (15 bp):
AAAACTTAAATTTGG
Found at i:23226053 original size:18 final size:18
Alignment explanation
Indices: 23226021--23226069 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
23226011 TTTAAAACTT
* *
23226021 AAATTTTGA-AAACTTCA
1 AAATTTGGAGAAACTTAA
*
23226038 TAATTTGGAGAAACTTAA
1 AAATTTGGAGAAACTTAA
23226056 AAATTTGGAGAAAC
1 AAATTTGGAGAAAC
23226070 GAGTGAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 7 0.26
18 20 0.74
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (18 bp):
AAATTTGGAGAAACTTAA
Found at i:23226117 original size:142 final size:142
Alignment explanation
Indices: 23225960--23226215 Score: 451
Period size: 142 Copynumber: 1.8 Consensus size: 142
23225950 ATCATAATTG
*
23225960 TAATTTGTAAGTTGAAATTAAAA-CTTGATTAAATCTTGAAAAGGAAAATAATTTAAAACTTAAA
1 TAATTTGTAAGTTGAAATTAAAATC-TGATTAAATCTTGAAAAGGAAAATAATCTAAAACTTAAA
* *
23226024 TTTTGAAAACTTCATAATTTGGAGAAACTTAAAAATTTGGAGAAACGAGTGAAATTCAAAATGCG
65 TTTTGAAAACTTAAAAATTTGGAGAAACTTAAAAATTTGGAGAAACGAGTGAAATTCAAAATGCG
23226089 ATAATCGTAACCA
130 ATAATCGTAACCA
*
23226102 TAATTTGTAAGTTGAAATTAAAATCTGATTAAATCTTGAAAAGGAAAATAATCTAGAACTTAAAT
1 TAATTTGTAAGTTGAAATTAAAATCTGATTAAATCTTGAAAAGGAAAATAATCTAAAACTTAAAT
*
23226167 TTTGAAAACTTAAAAATTTGGAGAAACTTAAAAATTTGGAGAAATGAGT
66 TTTGAAAACTTAAAAATTTGGAGAAACTTAAAAATTTGGAGAAACGAGT
23226216 TTTGATTTTT
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
142 107 0.99
143 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (142 bp):
TAATTTGTAAGTTGAAATTAAAATCTGATTAAATCTTGAAAAGGAAAATAATCTAAAACTTAAAT
TTTGAAAACTTAAAAATTTGGAGAAACTTAAAAATTTGGAGAAACGAGTGAAATTCAAAATGCGA
TAATCGTAACCA
Found at i:23226195 original size:18 final size:18
Alignment explanation
Indices: 23226163--23226210 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
23226153 TCTAGAACTT
*
23226163 AAATTTTGA-AAACTTAA
1 AAATTTGGAGAAACTTAA
23226180 AAATTTGGAGAAACTTAA
1 AAATTTGGAGAAACTTAA
23226198 AAATTTGGAGAAA
1 AAATTTGGAGAAA
23226211 TGAGTTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 8 0.28
18 21 0.72
ACGTcount: A:0.52, C:0.04, G:0.15, T:0.29
Consensus pattern (18 bp):
AAATTTGGAGAAACTTAA
Found at i:23226479 original size:22 final size:23
Alignment explanation
Indices: 23226434--23226490 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
23226424 TATTCATACA
* *
23226434 CCAGAGAAT-CTTACTGTTCTTG
1 CCAGAGAATATTTACTGTTCATG
23226456 CCA-AGGAATATTTACTGTT-ATG
1 CCAGA-GAATATTTACTGTTCATG
23226478 CCAGAGAATATTT
1 CCAGAGAATATTT
23226491 CTTGTTTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 1 0.03
22 20 0.67
23 9 0.30
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (23 bp):
CCAGAGAATATTTACTGTTCATG
Found at i:23228632 original size:21 final size:22
Alignment explanation
Indices: 23228592--23228633 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
23228582 GACTATGCGA
23228592 TCTGAACTCATGAGTTATGTGG
1 TCTGAACTCATGAGTTATGTGG
*
23228614 TCTGAGCTCATGA-TTATGTG
1 TCTGAACTCATGAGTTATGTG
23228634 ACAAATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.38
Consensus pattern (22 bp):
TCTGAACTCATGAGTTATGTGG
Found at i:23236715 original size:104 final size:103
Alignment explanation
Indices: 23236593--23236815 Score: 376
Period size: 104 Copynumber: 2.2 Consensus size: 103
23236583 AATGGATATC
23236593 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23236658 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACC-ATAAACCGGGGAATCA
23236697 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
23236762 GGATCACGCACATAGCACCACCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCATAAACCGGGGAATCA
**
23236800 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
23236816 TTTATATACA
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
103 28 0.25
104 84 0.74
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCATAAACCGGGGAATCA
Found at i:23237177 original size:29 final size:29
Alignment explanation
Indices: 23237144--23237207 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
23237134 TAATCCACCA
23237144 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
23237173 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
23237203 CCCAA
1 CCCAA
23237208 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:23237181 original size:30 final size:30
Alignment explanation
Indices: 23237151--23237207 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23237141 CCACCCAACT
23237151 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
23237180 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
23237208 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:23244285 original size:104 final size:104
Alignment explanation
Indices: 23244163--23244386 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
23244153 AATGGATATC
23244163 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23244228 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
23244267 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23244332 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
23244371 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
23244387 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:23244748 original size:29 final size:29
Alignment explanation
Indices: 23244715--23244778 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
23244705 TAATCCACCA
23244715 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
23244744 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
23244774 CCCAA
1 CCCAA
23244779 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:23244752 original size:30 final size:30
Alignment explanation
Indices: 23244722--23244778 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23244712 CCACCCAACT
23244722 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
23244751 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
23244779 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:23247026 original size:22 final size:21
Alignment explanation
Indices: 23246998--23247038 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
23246988 CCATATTTTG
23246998 AAGTGGGTAGTAAAAGATGTAA
1 AAGTGGGTAGTAAAA-ATGTAA
23247020 AAGTGGGTAGTAAAAATGT
1 AAGTGGGTAGTAAAAATGT
23247039 GAAATAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (21 bp):
AAGTGGGTAGTAAAAATGTAA
Found at i:23247960 original size:48 final size:48
Alignment explanation
Indices: 23247906--23248043 Score: 177
Period size: 48 Copynumber: 2.9 Consensus size: 48
23247896 CACCGATATC
* *
23247906 TGATCCCATGTAAGATCATGTCTGGGACATGGCATTGGCATCAACCTA
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATA
* * ** * *
23247954 TGATCCCATGTAAGACCATGTTTGAGACATGGCATTGGCATTGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATA
* * *
23248002 TGATCCCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
23248044 CTACCATGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATA
Found at i:23252862 original size:136 final size:136
Alignment explanation
Indices: 23252618--23252886 Score: 484
Period size: 136 Copynumber: 2.0 Consensus size: 136
23252608 TACCGATCAC
*
23252618 AAAAGTCTTAAGTACTTGATGACTCAAAAGGACTTGAACTGGCGGCAACGAAGATGGTTAGAATT
1 AAAAGTCTTAAGTACTTGATGACTCAAAAGGACTTGAACTGGCGGCAACGAAGATGGTTAGAACT
* * *
23252683 GTTAAAATATTATGAGCTTGTGATTGATTACCATCCGAGTAAGGCGAATGTGTTCGCCGACGCTT
66 GTTAAAAGATTATGAGCTTGTGATTGATTACCATCCGAGTAAGGCGAATGTGGTCACCGACGCTT
23252748 TGATTA
131 TGATTA
*
23252754 AAAAGTCTTAAGTACTTGATGACTCAAAAGGACTTGAACTTGCGGCAACGAAGATGGTTAGAACT
1 AAAAGTCTTAAGTACTTGATGACTCAAAAGGACTTGAACTGGCGGCAACGAAGATGGTTAGAACT
*
23252819 GTTAAAAGATTATGAGCTTGTGATTGATTACCATCCGAGTAAGGCGAATGTGGTCACTGACGCTT
66 GTTAAAAGATTATGAGCTTGTGATTGATTACCATCCGAGTAAGGCGAATGTGGTCACCGACGCTT
23252884 TGA
131 TGA
23252887 GTAAGTCGTT
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
136 127 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (136 bp):
AAAAGTCTTAAGTACTTGATGACTCAAAAGGACTTGAACTGGCGGCAACGAAGATGGTTAGAACT
GTTAAAAGATTATGAGCTTGTGATTGATTACCATCCGAGTAAGGCGAATGTGGTCACCGACGCTT
TGATTA
Found at i:23262722 original size:47 final size:46
Alignment explanation
Indices: 23262662--23262883 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 46
23262652 ACAACTCTTA
* * *
23262662 GCCGATGCGTGTCCCAAACACGTCTTACACTGGCTATCTCT-GTCGA-G
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAT-TATAGT--ATG
*
23262709 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATG
1 GCCGATGCATGTCCCAGACA-CGTCTTACACTGGCTATTATAGTATG
* * * ** * * *
23262756 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTTGTCTGGAT-
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATTAT-AGTATG
* * * * * * *
23262802 ACCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATTATAGTATG
* *
23262850 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
23262884 ACACAAATCA
Statistics
Matches: 140, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
46 34 0.24
47 68 0.49
48 38 0.27
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATTATAGTATG
Found at i:23262818 original size:94 final size:93
Alignment explanation
Indices: 23262710--23262880 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 93
23262700 TCTGTCGAGG
* * * * *
23262710 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATGGCTGATGCATGTCCCAGAC
1 CCGATGCATATCCCAGACATGGTCTTACACTGGCTATCATAATATGGCCGAAGCATGTCCCAGAC
23262775 ATGTCTTACACTAGCCCTTGTCTGGATA
66 ATGTCTTACACTAGCCCTTGTCTGGATA
* *
23262803 CCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGA
1 CCGATG-CATATCCCAGACATGGTCTTACACTGGCTATCATAATATGGCCGAAGCATGTCCCAGA
23262868 CATGTCTTACACT
65 CATGTCTTACACT
23262881 GGCACACAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 6 0.09
94 64 0.91
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (93 bp):
CCGATGCATATCCCAGACATGGTCTTACACTGGCTATCATAATATGGCCGAAGCATGTCCCAGAC
ATGTCTTACACTAGCCCTTGTCTGGATA
Found at i:23262875 original size:140 final size:138
Alignment explanation
Indices: 23262579--23262883 Score: 343
Period size: 140 Copynumber: 2.2 Consensus size: 138
23262569 CCGATGCCAC
*
23262579 GTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGAATGTCCCAGACATGTCTT
1 GTCCCAGACATGGTCTTACACTGGCTATCATATAC-CGTGCTGATGAATGTCCCAGACATGTCTT
* * *
23262644 ACACTAGCACAACTCTTAGCCGATGCGTGTCCCAAACACGTCTTACACTGGCTATCTCTGTCGAG
65 ACACTAGCACAACTCTTAGCCGATGCATATCCCAAACACGTCTTACACTGGC-ATCTCTATCGAG
*
23262709 GCCGATGCAT
129 GCCGAAGCAT
* * *
23262719 GTCCCAGACATGGTCTTACACTGGCTATTATAGTA-TG-GCTGATGCATGTCCCAGACATGTCTT
1 GTCCCAGACATGGTCTTACACTGGCTATCATA-TACCGTGCTGATGAATGTCCCAGACATGTCTT
* *** * *
23262782 ACACTAGCCCTTGTCTGGATA-CCGATGCCATATCCCAGACATGGTCTTACACTGGC-TCTCATA
65 ACACTAGCACAACTCT---TAGCCGATG-CATATCCCAAACA-CGTCTTACACTGGCATCTC-T-
*
23262845 AT-GTGGCCGAAGCAT
123 ATCGAGGCCGAAGCAT
23262860 GTCCCAGACAT-GTCTTACACTGGC
1 GTCCCAGACATGGTCTTACACTGGC
23262884 ACACAAATCA
Statistics
Matches: 142, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
138 37 0.26
139 1 0.01
140 53 0.37
141 37 0.26
142 14 0.10
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (138 bp):
GTCCCAGACATGGTCTTACACTGGCTATCATATACCGTGCTGATGAATGTCCCAGACATGTCTTA
CACTAGCACAACTCTTAGCCGATGCATATCCCAAACACGTCTTACACTGGCATCTCTATCGAGGC
CGAAGCAT
Found at i:23270019 original size:19 final size:19
Alignment explanation
Indices: 23269995--23270085 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
23269985 ATAATCTTCA
23269995 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23270014 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23270033 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23270050 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23270068 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
23270086 ATATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:23270066 original size:35 final size:37
Alignment explanation
Indices: 23269995--23270092 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
23269985 ATAATCTTCA
23269995 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
23270033 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
23270068 ATGATATGCAATCTTAGA-AT-ATATG
1 ATGATA-GCAATCTTAGATATGATATG
23270093 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 21 0.37
36 20 0.35
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:23279209 original size:78 final size:78
Alignment explanation
Indices: 23278961--23279224 Score: 424
Period size: 78 Copynumber: 3.4 Consensus size: 78
23278951 CGAAGAAACA
** * * *
23278961 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGATCTGACCTTCATTGAA
*
23279026 ACAGATCCAAGAT
66 GCAGATCCAAGAT
* *
23279039 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACA-CACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGATCTGACCTTCATTGAA
23279103 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
23279116 GATTTGGCATCTCTGTAGTAGACGGGGAGCAGATTGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGATCT-GACCTTCATTGA
23279180 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
23279194 GATTTGGCATCTCTGTATTAGACGGGGAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCA
23279225 AATCGGAGAT
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
77 73 0.42
78 99 0.58
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:23279300 original size:44 final size:45
Alignment explanation
Indices: 23279194--23279372 Score: 261
Period size: 45 Copynumber: 4.0 Consensus size: 45
23279184 GATCCAAGAT
* *
23279194 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
23279239 GATTAGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
23279283 GATTTGGCGTATCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
23279328 GATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
23279373 AATATCGCCT
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 39 0.32
45 81 0.68
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:23279345 original size:89 final size:89
Alignment explanation
Indices: 23279194--23279361 Score: 273
Period size: 89 Copynumber: 1.9 Consensus size: 89
23279184 GATCCAAGAT
* *
23279194 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTAGGCATCTCTGTATTA
1 GATTTGGCATATCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTAGGCATCTCTGTATTA
23279259 GACGGGGAGCAGATTGAAGAAGCA
66 GACGGGGAGCAGATTGAAGAAGCA
* * * *
23279283 GATTTGGCGTATCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTA
1 GATTTGGCATATCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTAGGCATCTCTGTATTA
*
23279348 GATGGGGAGCAGAT
66 GACGGGGAGCAGAT
23279362 CAAAGATAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.26
Consensus pattern (89 bp):
GATTTGGCATATCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTAGGCATCTCTGTATTA
GACGGGGAGCAGATTGAAGAAGCA
Found at i:23281219 original size:47 final size:45
Alignment explanation
Indices: 23281109--23281419 Score: 228
Period size: 47 Copynumber: 6.7 Consensus size: 45
23281099 TACGCGTGCT
* * *
23281109 GATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATC-TCTGTTAGGCC
* *
23281153 GATGCGTGTCCTAGACATGTCTTACACTGGCTATCTCTGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTGTT-AGGCC
* * * *
23281200 GATGCATGTCTCAAACATGTCTTACACTTGCACTCATCT-CT-GTGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TC-TCTGTTAG-GCC
* * *
23281246 GATGCCATGTCCCAAACATGGTCTTACACTGGCTAT-TATAG-TATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCTCT-GTTA-GGCC
* * *
23281294 GATGCATGTCCCAGACATGTCTTACACTAGC-CCT-TGTCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCTCTGT-T--AGGCC
*
23281340 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAATGT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-T-GT-TAGGCC
*
23281388 GAAGCATGTCCCAGACATGTCTTACACTGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCA
23281420 CACAAATCAC
Statistics
Matches: 216, Mismatches: 26, Indels: 47
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.00
44 29 0.13
45 8 0.04
46 43 0.20
47 88 0.41
48 42 0.19
49 2 0.01
50 1 0.00
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCTCTGTTAGGCC
Found at i:23281300 original size:94 final size:93
Alignment explanation
Indices: 23281055--23281420 Score: 381
Period size: 94 Copynumber: 3.9 Consensus size: 93
23281045 TGAGATATAT
* * * *
23281055 TGCCGATGCCACAG-CCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGT
1 TGCCGATGCCA-TGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGT
*
23281118 CCCAGACATGTCTTACACTAGCA-CAACTCT-
62 CCCAGACATGTCTTACACTAGCACCATCTCTG
* * *
23281148 TAGCCGATG-CGTGTCCTAGACAT-GTCTTACACTGGCTATC-TCTGT-TGAGGCCGATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTAT--GGCCGATGCATGT
* * *
23281209 CTCAAACATGTCTTACACTTGCACTCATCTCTG
62 CCCAGACATGTCTTACACTAGCAC-CATCTCTG
* * *
23281242 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATTATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
* *
23281307 GACATGTCTTACACTAGC-CCTTGTCTGG
66 GACATGTCTTACACTAGCACCATCTCT-G
* * * *
23281335 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCC
*
23281400 AGACATGTCTTACACTGGCAC
65 AGACATGTCTTACACTAGCAC
23281421 ACAAATCACT
Statistics
Matches: 227, Mismatches: 30, Indels: 30
0.79 0.10 0.10
Matches are distributed among these distances:
91 32 0.14
92 23 0.10
93 26 0.11
94 125 0.55
95 19 0.08
96 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACCATCTCTG
Done.