Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 76 of 332
Found at i:23483447 original size:79 final size:81
Alignment explanation
Indices: 23483345--23483529 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
23483335 GCTCCTCGTT
* *
23483345 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
23483408 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
23483425 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
23483489 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
23483505 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23483530 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:23483529 original size:40 final size:40
Alignment explanation
Indices: 23483345--23483529 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
23483335 GCTCCTCGTT
* *
23483345 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
23483385 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
23483425 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
23483464 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
23483505 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23483530 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:23485508 original size:32 final size:32
Alignment explanation
Indices: 23485467--23485533 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
23485457 AGCTTACTCG
23485467 TGTTATTTGTCTTATTTCTTGTAGATACATTT
1 TGTTATTTGTCTTATTTCTTGTAGATACATTT
23485499 TGTTATTTGTCTTATTTCTTGTAGATACATTT
1 TGTTATTTGTCTTATTTCTTGTAGATACATTT
23485531 TGT
1 TGT
23485534 GGATCAGGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.18, C:0.09, G:0.13, T:0.60
Consensus pattern (32 bp):
TGTTATTTGTCTTATTTCTTGTAGATACATTT
Found at i:23493395 original size:8 final size:8
Alignment explanation
Indices: 23493382--23493427 Score: 74
Period size: 8 Copynumber: 5.8 Consensus size: 8
23493372 AGATCGGCAC
23493382 AAGCCGAA
1 AAGCCGAA
23493390 AAGCCGAA
1 AAGCCGAA
*
23493398 ATGCCGAA
1 AAGCCGAA
23493406 AAGCCGAA
1 AAGCCGAA
*
23493414 ATGCCGAA
1 AAGCCGAA
23493422 AAGCCG
1 AAGCCG
23493428 GTATTTTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.43, C:0.26, G:0.26, T:0.04
Consensus pattern (8 bp):
AAGCCGAA
Found at i:23493405 original size:16 final size:16
Alignment explanation
Indices: 23493384--23493427 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
23493374 ATCGGCACAA
23493384 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
23493400 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
23493416 GCCGAAAAGCCG
1 GCCGAAAAGCCG
23493428 GTATTTTGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.41, C:0.27, G:0.27, T:0.05
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:23493857 original size:27 final size:27
Alignment explanation
Indices: 23493816--23493957 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
23493806 GAGGAAGCGT
23493816 TCTGGTGGCTATGCCACAATTATCTGA
1 TCTGGTGGCTATGCCACAATTATCTGA
*
23493843 TCTGGTGGCTCTGCCAC-ATATATCTG-
1 TCTGGTGGCTATGCCACAAT-TATCTGA
23493869 TCCTGGTGGCTATGCCACAATTATCTGA
1 T-CTGGTGGCTATGCCACAATTATCTGA
* * *
23493897 TCTGGTGGCTCTACCAC-ATATATCTGT
1 TCTGGTGGCTATGCCACAAT-TATCTGA
*
23493924 TCTGGTTGCTATGCCACAA-TATCTGTA
1 TCTGGTGGCTATGCCACAATTATCTG-A
23493951 TCTGGTG
1 TCTGGTG
23493958 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTATGCCACAATTATCTGA
Found at i:23493899 original size:54 final size:54
Alignment explanation
Indices: 23493817--23493957 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
23493807 AGGAAGCGTT
*
23493817 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTC
*
23493871 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTC
*
23493925 CTGGTTGCTATGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
23493958 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTC
Found at i:23493969 original size:81 final size:80
Alignment explanation
Indices: 23493816--23493975 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 80
23493806 GAGGAAGCGT
* * *
23493816 TCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTA
1 TCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTATGCCACATATATCTGTCCTGGTGACTA
23493881 TGCCACAATTATCTGA
66 TGCCACAA-TATCTGA
* * * *
23493897 TCTGGTGGCTCTACCAC-ATATATCTGTTCTGGTTGCTATGCCACA-ATATCTGTATCTGGTGAC
1 TCTGGTGGCTATACCACAAT-TATCTGATCTGGTGGCTATGCCACATATATCTGT-CCTGGTGAC
*
23493960 T-TCGTCACAATATCTG
64 TAT-GCCACAATATCTG
23493976 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
80 17 0.25
81 51 0.75
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
TCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTATGCCACATATATCTGTCCTGGTGACTA
TGCCACAATATCTGA
Found at i:23496070 original size:13 final size:13
Alignment explanation
Indices: 23496052--23496077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23496042 TCTCGACAGG
23496052 GACACGCCTGTGT
1 GACACGCCTGTGT
23496065 GACACGCCTGTGT
1 GACACGCCTGTGT
23496078 AAGATGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:23498070 original size:16 final size:16
Alignment explanation
Indices: 23498046--23498076 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23498036 AGGATGAAAT
*
23498046 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
23498062 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
23498077 AGTAGTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:23498077 original size:11 final size:11
Alignment explanation
Indices: 23498042--23498077 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
23498032 CCTAAGGATG
*
23498042 AAATAAAATTA
1 AAATAAAATAA
*
23498053 AAATAAAAGAA
1 AAATAAAATAA
23498064 AAATAAAATAA
1 AAATAAAATAA
23498075 AAA
1 AAA
23498078 GTAGTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:23498108 original size:20 final size:21
Alignment explanation
Indices: 23498085--23498130 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
23498075 AAAGTAGTTT
*
23498085 TAAAAAGATAAAAATAA-AAA
1 TAAAAACATAAAAATAATAAA
*
23498105 TAAAAACATAAAATTAATAAA
1 TAAAAACATAAAAATAATAAA
23498126 TAAAA
1 TAAAA
23498131 GTCTTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAAAACATAAAAATAATAAA
Found at i:23517358 original size:41 final size:41
Alignment explanation
Indices: 23517301--23517450 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
23517291 TCGGGGTTTA
23517301 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
23517342 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
23517383 AAT-CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
23517423 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
23517451 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:23528943 original size:61 final size:58
Alignment explanation
Indices: 23528836--23528951 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 58
23528826 ATTACTTTAA
*
23528836 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATATAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
23528894 TATTAAATTAATATAA-AGCTTATCTACAAGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAATATAATA-CTTA--T-CAAGATAAATATTAAATTAAATTTAATATTAA
23528952 GATAATCACT
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
57 1 0.02
58 20 0.38
60 1 0.02
61 31 0.58
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATATAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:23529698 original size:32 final size:32
Alignment explanation
Indices: 23529657--23529721 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
23529647 ATTCACAATT
*
23529657 ACTTAATCACGGAGTCAGTCCACAAGAAGTAC
1 ACTTAATCACGGAGTCAGTCCACAAAAAGTAC
23529689 ACTTAATCACGGAGTCAGTCCACAAAAAGTAC
1 ACTTAATCACGGAGTCAGTCCACAAAAAGTAC
23529721 A
1 A
23529722 ATGATTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (32 bp):
ACTTAATCACGGAGTCAGTCCACAAAAAGTAC
Found at i:23536642 original size:46 final size:45
Alignment explanation
Indices: 23536592--23536767 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
23536582 TGGTTGAGCA
23536592 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
23536638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
23536685 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
23536731 GCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23536768 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:23536748 original size:93 final size:93
Alignment explanation
Indices: 23536589--23536759 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
23536579 GGATGGTTGA
* *
23536589 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAGT
23536654 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
23536682 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGATCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAGT
23536747 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23536760 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:23539744 original size:32 final size:30
Alignment explanation
Indices: 23539708--23539766 Score: 91
Period size: 32 Copynumber: 1.9 Consensus size: 30
23539698 ATAGTATCGT
*
23539708 ATCTTGGGTTTCTTTATTCTGGATTTCTTTCC
1 ATCTTGGATTTCTTTATTC-GG-TTTCTTTCC
23539740 ATCTTGGATTTCTTTATTCGGTTTCTT
1 ATCTTGGATTTCTTTATTCGGTTTCTT
23539767 GTTATCTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 6 0.23
31 2 0.08
32 18 0.69
ACGTcount: A:0.10, C:0.17, G:0.15, T:0.58
Consensus pattern (30 bp):
ATCTTGGATTTCTTTATTCGGTTTCTTTCC
Found at i:23542203 original size:46 final size:44
Alignment explanation
Indices: 23542146--23542322 Score: 185
Period size: 46 Copynumber: 3.9 Consensus size: 44
23542136 ATGGTTGAGC
*
23542146 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
23542190 ATGTCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
23542239 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
23542284 CACCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23542323 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:23542303 original size:93 final size:93
Alignment explanation
Indices: 23542144--23542314 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
23542134 GGATGGTTGA
*** *
23542144 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
23542209 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
23542237 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGATCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
23542302 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23542315 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:23545883 original size:13 final size:13
Alignment explanation
Indices: 23545865--23545920 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
23545855 TAGATTTTTC
23545865 CTAAATATTATCA
1 CTAAATATTATCA
*
23545878 CTAAATA--AT-T
1 CTAAATATTATCA
23545888 CTAAATATTATCA
1 CTAAATATTATCA
*
23545901 TTAAATATTATCA
1 CTAAATATTATCA
*
23545914 CTCAATA
1 CTAAATA
23545921 ATTCAAGATC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 7 0.20
11 2 0.06
12 2 0.06
13 24 0.69
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:23546868 original size:4 final size:4
Alignment explanation
Indices: 23546859--23546892 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
23546849 TTAACCAAGC
* *
23546859 TATT TATT TATT TGTT TGTT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TATT TA
23546893 AAGGAGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:23551230 original size:13 final size:13
Alignment explanation
Indices: 23551212--23551253 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
23551202 AGATTTTTCT
23551212 TAAATATTATCAC
1 TAAATATTATCAC
*
23551225 TAAATA--AT-TC
1 TAAATATTATCAC
23551235 TAAATATTATCAC
1 TAAATATTATCAC
23551248 TAAATA
1 TAAATA
23551254 ATTCAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:23551239 original size:23 final size:23
Alignment explanation
Indices: 23551212--23551263 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
23551202 AGATTTTTCT
23551212 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
23551235 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
23551258 AAAATA
1 TAAATA
23551264 AAATTTAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:23554424 original size:26 final size:26
Alignment explanation
Indices: 23554388--23554449 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
23554378 ACATATTTTC
*
23554388 TCAAAATTTTACTAAGGGAAAAATCG
1 TCAAAATTTTACTAAAGGAAAAATCG
* *
23554414 TCAAAATTTTACTAAAGGTAAAATTG
1 TCAAAATTTTACTAAAGGAAAAATCG
23554440 TCAAAATTTT
1 TCAAAATTTT
23554450 GTTGGGAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAAAGGAAAAATCG
Found at i:23563458 original size:18 final size:18
Alignment explanation
Indices: 23563437--23563496 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
23563427 AATCGGTTAA
*
23563437 TCAGTAATATTCATTTAT
1 TCAGTAATAGTCATTTAT
23563455 TCAGT-ATCAGTCATTTAT
1 TCAGTAAT-AGTCATTTAT
* * *
23563473 TCTGTAACAGTCAATTAT
1 TCAGTAATAGTCATTTAT
23563491 TCAGTA
1 TCAGTA
23563497 GCAGACAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.91
19 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:23572629 original size:18 final size:18
Alignment explanation
Indices: 23572608--23572655 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
23572598 AGTAATATTT
*
23572608 ATTTATTCAGTATCAGTC
1 ATTTATTCAGTAACAGTC
*
23572626 ATTTATTCTGTAACAGTC
1 ATTTATTCAGTAACAGTC
*
23572644 AATTATTCAGTA
1 ATTTATTCAGTA
23572656 GCAGACAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (18 bp):
ATTTATTCAGTAACAGTC
Found at i:23573915 original size:19 final size:20
Alignment explanation
Indices: 23573886--23573925 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
23573876 TCGTTTCATG
23573886 TTCTGTTCTTTCTA-TTCTTT
1 TTCTGTTCTTT-TATTTCTTT
23573906 TTCT-TTCTTTTATTTCTTT
1 TTCTGTTCTTTTATTTCTTT
23573925 T
1 T
23573926 GTTTCTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 13 0.68
20 4 0.21
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (20 bp):
TTCTGTTCTTTTATTTCTTT
Found at i:23573925 original size:18 final size:19
Alignment explanation
Indices: 23573886--23573937 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
23573876 TCGTTTCATG
23573886 TTCTGTTCTTTCTA-TTCTTT
1 TTCT-TTCTTT-TATTTCTTT
23573906 TTCTTTCTTTTATTTC-TT
1 TTCTTTCTTTTATTTCTTT
*
23573924 TTGTTTC-TTTATTT
1 TTCTTTCTTTTATTT
23573938 AACTATTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.23
18 10 0.33
19 9 0.30
20 4 0.13
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (19 bp):
TTCTTTCTTTTATTTCTTT
Found at i:23579798 original size:47 final size:46
Alignment explanation
Indices: 23579730--23579996 Score: 229
Period size: 47 Copynumber: 5.7 Consensus size: 46
23579720 TGATTTGTGC
* **
23579730 GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACAAAGATGAGA
* * *
23579776 GCCAGTGTAAAGCCATGTCTGGGACATGGCATCGGCACAAAGATGAGT
1 GCCAGTGT-AAGACATGTCTGGGACAT-GCATCGCCACAAAGATGAGA
* * *
23579824 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACAA-AGATGAGA
* * * * *
23579871 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AAAG-T-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACAAAGATGAGA
* * * * *
23579915 GCTAGTATAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GC-CACAAAGATGAGA
*
23579963 GCCAGTGTAAGACCATGTCTGAGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
23579997 GTAATTTATC
Statistics
Matches: 175, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
44 29 0.17
45 2 0.01
46 17 0.10
47 77 0.44
48 31 0.18
49 14 0.08
50 5 0.03
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGCCACAAAGATGAGA
Found at i:23579891 original size:94 final size:91
Alignment explanation
Indices: 23579730--23579997 Score: 301
Period size: 94 Copynumber: 2.9 Consensus size: 91
23579720 TGATTTGTGC
* * * *
23579730 GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAAGCCATGTC
1 GCCAGAGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGT-AAGACATGTC
23579795 TGGGACATGGCATCGGC-ACAAAGATGAGT
65 TGGGACATGGCATCGGCTA-AAAG-T-AGT
* * * *
23579824 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-GAGATAGCCAGTGTAAGACGTGT
1 GCCAGAGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAG--AGCCAGTGTAAGACATGT
* *
23579888 CTGGGACA-CGCATCGGCTAAAAGTTGT
64 CTGGGACATGGCATCGGCTAAAAGTAGT
* *
23579915 GCTAGTA-TAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGAGCCAGTGTAAGACCAT
1 GCCAG-AGTAAGACATGTCTGGGACATGCATCAGC-CACA-ATATGAGAGCCAGTGTAAGA-CAT
*
23579979 GTCTGAGACATGGCATCGG
62 GTCTGGGACATGGCATCGG
23579998 TAATTTATCC
Statistics
Matches: 148, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
91 32 0.22
92 18 0.12
93 28 0.19
94 61 0.41
95 9 0.06
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (91 bp):
GCCAGAGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCT
GGGACATGGCATCGGCTAAAAGTAGT
Found at i:23587026 original size:33 final size:32
Alignment explanation
Indices: 23586977--23587040 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
23586967 CTCACTGCAA
* *
23586977 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
23587010 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
23587041 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:23587054 original size:27 final size:26
Alignment explanation
Indices: 23587002--23587060 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
23586992 ACATATATAT
*
23587002 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
23587028 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
23587055 ATATCT
1 ATATCT
23587061 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:23597047 original size:25 final size:26
Alignment explanation
Indices: 23596980--23597047 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
23596970 TTCTTGAAAC
** *
23596980 TTTACTAGGGACAAAATCGTCAAAAT
1 TTTACTAGGGGTAAAATCCTCAAAAT
*
23597006 TTTACTAGGGGTAAAATCCTCAAAGT
1 TTTACTAGGGGTAAAATCCTCAAAAT
*
23597032 TTTGCT-GGGGTAAAAT
1 TTTACTAGGGGTAAAAT
23597048 AGAAATGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 10 0.27
26 27 0.73
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (26 bp):
TTTACTAGGGGTAAAATCCTCAAAAT
Found at i:23598492 original size:20 final size:20
Alignment explanation
Indices: 23598469--23598512 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
23598459 TTGATAGTAT
23598469 TTTATTAATTTAATATTAAA
1 TTTATTAATTTAATATTAAA
*
23598489 TTTATTATTTTAATATTAAA
1 TTTATTAATTTAATATTAAA
23598509 TTTA
1 TTTA
23598513 ATCTAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATTAATTTAATATTAAA
Found at i:23604409 original size:21 final size:19
Alignment explanation
Indices: 23604376--23604421 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
23604366 CGATTAATCG
23604376 ATCTATTTGAAATCTTGTCAA
1 ATCT-TTTGAAATCTTG-CAA
*
23604397 ATCTTTTGCAAATCTTGCCA
1 ATCTTTTG-AAATCTTGCAA
23604417 ATCTT
1 ATCTT
23604422 GACACAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (19 bp):
ATCTTTTGAAATCTTGCAA
Found at i:23613733 original size:39 final size:38
Alignment explanation
Indices: 23613687--23613861 Score: 147
Period size: 40 Copynumber: 4.4 Consensus size: 38
23613677 CAACCAAGTA
* *
23613687 CCTTCGGGGTTTAGCCGGATATAGCTACTCGCCCAAATG
1 CCTTCGGGATTTAGCCGG-TATAGCTACTCGCACAAATG
* *
23613726 CCTTCGGGACTTAGCCTGGTCATAGCAACTCGCACAAATG
1 CCTTCGGGATTTAGCC-GGT-ATAGCTACTCGCACAAATG
* * *
23613766 CCTTCGGGACTTAACCCGGTTATAG-TAACTCGCACAATTG
1 CCTTCGGGA-TTTAGCCGG-TATAGCT-ACTCGCACAAATG
* * *
23613806 CCTTCGGGACTTAGCCCGGAATTAG-TCACTAGCACAAATG
1 CCTTCGGGATTTAG-CCGGTA-TAGCT-ACTCGCACAAATG
* *
23613846 CCTTTGGGACTTAGCC
1 CCTTCGGGATTTAGCC
23613862 CGGTTATTAT
Statistics
Matches: 112, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
39 20 0.18
40 87 0.78
41 5 0.04
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (38 bp):
CCTTCGGGATTTAGCCGGTATAGCTACTCGCACAAATG
Found at i:23613764 original size:40 final size:40
Alignment explanation
Indices: 23613707--23613865 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
23613697 TTAGCCGGAT
* * * *
23613707 ATAGCTACTCGCCCAAATGCCTTCGGGACTTAGCCTGGTC
1 ATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
* *
23613747 ATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGTT
1 ATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
* *
23613787 ATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGG-A
1 ATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
* *
23613826 ATTAGTC-ACTAGCACAAATGCCTTTGGGACTTAGCCCGGT
1 A-TAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
23613866 TATTATCCGA
Statistics
Matches: 103, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 102 0.99
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
ATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
Found at i:23613841 original size:80 final size:80
Alignment explanation
Indices: 23613713--23613868 Score: 217
Period size: 80 Copynumber: 1.9 Consensus size: 80
23613703 GGATATAGCT
* * * *
23613713 ACTCGCCCAAATGCCTTCGGGACTTAGCCTGGTCATAGCAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGCAACTAGCACAAATGCCTTCGGGACTT
23613778 AACCCGGTTATAGTA
66 AACCCGGTTATAGTA
* *
23613793 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-AATTAGTC-ACTAGCACAAATGCCTTTGGGAC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAA-TAG-CAACTAGCACAAATGCCTTCGGGAC
*
23613856 TTAGCCCGGTTAT
64 TTAACCCGGTTAT
23613869 TATCCGAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
79 1 0.01
80 65 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGCAACTAGCACAAATGCCTTCGGGACTT
AACCCGGTTATAGTA
Found at i:23621863 original size:40 final size:39
Alignment explanation
Indices: 23621802--23621960 Score: 212
Period size: 40 Copynumber: 4.0 Consensus size: 39
23621792 TTAGCCGGAT
* *
23621802 ATAGCTACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTC
1 ATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
* *
23621842 ATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGGTT
1 ATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
*
23621882 ATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGG-A
1 ATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
*
23621921 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 A-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
23621961 TATTATCCGA
Statistics
Matches: 106, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
ATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTA
Found at i:23621936 original size:80 final size:80
Alignment explanation
Indices: 23621808--23621963 Score: 235
Period size: 80 Copynumber: 1.9 Consensus size: 80
23621798 GGATATAGCT
* * *
23621808 ACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTCATAGTAGCTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGTAGCTAGCACAAATGCCTTCGGGACTT
23621873 AACCCGGTTATAGTA
66 AACCCGGTTATAGTA
*
23621888 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-AATTAGTCA-CTAGCACAAATGCCTTCGGGAC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAA-TAGT-AGCTAGCACAAATGCCTTCGGGAC
*
23621951 TTAGCCCGGTTAT
64 TTAACCCGGTTAT
23621964 TATCCGAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
79 1 0.01
80 67 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGTAGCTAGCACAAATGCCTTCGGGACTT
AACCCGGTTATAGTA
Found at i:23624706 original size:19 final size:19
Alignment explanation
Indices: 23624678--23624716 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
23624668 AGAGCAAAAG
23624678 AAATGAG-AAACGGGCCAA
1 AAATGAGAAAACGGGCCAA
*
23624696 AAATAGAGAAAATGGGCCAA
1 AAAT-GAGAAAACGGGCCAA
23624716 A
1 A
23624717 GTACGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.13, G:0.26, T:0.08
Consensus pattern (19 bp):
AAATGAGAAAACGGGCCAA
Found at i:23628279 original size:14 final size:15
Alignment explanation
Indices: 23628260--23628292 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
23628250 CAAGCAAATG
23628260 ATGATACATGAAAA-
1 ATGATACATGAAAAC
*
23628274 ATGATATATGAAAAC
1 ATGATACATGAAAAC
23628289 ATGA
1 ATGA
23628293 GATGATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (15 bp):
ATGATACATGAAAAC
Found at i:23629541 original size:22 final size:21
Alignment explanation
Indices: 23629494--23629541 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
23629484 CGGCCTCCAG
*
23629494 CACGGGCGTGTCCTATGGTCA
1 CACGGGCGTGTCCTATGGCCA
23629515 CACGGGCGTGTCCCT-TGGACCA
1 CACGGGCGTGT-CCTATGG-CCA
23629537 CACGG
1 CACGG
23629542 ATGTGTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCTATGGCCA
Found at i:23635522 original size:16 final size:16
Alignment explanation
Indices: 23635503--23635543 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
23635493 TAAAAATAAT
*
23635503 TTAAAATATAAATTTA
1 TTAATATATAAATTTA
23635519 TTAATATATAAATTTA
1 TTAATATATAAATTTA
23635535 TTAATATAT
1 TTAATATAT
23635544 GTAAAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:23635669 original size:20 final size:19
Alignment explanation
Indices: 23635624--23635661 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23635614 CATACAAACA
23635624 CCAGAAAAATAAATCATTT
1 CCAGAAAAATAAATCATTT
23635643 CCAGAAAAATAAATCATTT
1 CCAGAAAAATAAATCATTT
23635662 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (19 bp):
CCAGAAAAATAAATCATTT
Found at i:23638882 original size:2 final size:2
Alignment explanation
Indices: 23638875--23638902 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23638865 TCAACATTTG
23638875 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
23638903 TGCATATCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:23639663 original size:92 final size:91
Alignment explanation
Indices: 23639564--23639765 Score: 223
Period size: 92 Copynumber: 2.2 Consensus size: 91
23639554 GAAATAAAAC
* * * *
23639564 AAAAAAATGATTTTTTAATGGAGT-CACCAATTTGTC-AGGAAGCATCGATGAATTTAAAAAA-A
1 AAAAAAAT-ATTTTTTAATGG-GTCCACCAATGTGTCAAGCAA-CACCAATGAATTTAAAAAAGA
* * *
23639626 AAGCAGTGTTACACAAAAAGTTGAGACAAG-
63 AAACAGTGTCA-AAAAAAAGTTGAGAC-AGT
* **
23639656 AAAAAAATATTTTTTAATGGGTGCCATCGGTGTGTCAAGCAACACCAATGAATTTAAAAAAGAAA
1 AAAAAAATATTTTTTAATGGGT-CCACCAATGTGTCAAGCAACACCAATGAATTTAAAAAAGAAA
*
23639721 ACGGTGTCAAAAAAAAGTTGAGACAGT
65 ACAGTGTCAAAAAAAAGTTGAGACAGT
23639748 AAAAAAATATTTTTTAAT
1 AAAAAAATATTTTTTAAT
23639766 TTGTGTCGTT
Statistics
Matches: 94, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
90 2 0.02
91 14 0.15
92 65 0.69
93 13 0.14
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.26
Consensus pattern (91 bp):
AAAAAAATATTTTTTAATGGGTCCACCAATGTGTCAAGCAACACCAATGAATTTAAAAAAGAAAA
CAGTGTCAAAAAAAAGTTGAGACAGT
Found at i:23641819 original size:15 final size:15
Alignment explanation
Indices: 23641774--23641819 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
23641764 GAAAAATGGA
*
23641774 CTAAATTGTCAAAGTG
1 CTAAAATGT-AAAGTG
23641790 -TGAAAATGT-AAGTG
1 CT-AAAATGTAAAGTG
23641804 CTAAAATGTAAAGTG
1 CTAAAATGTAAAGTG
23641819 C
1 C
23641820 CCTAAATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
14 12 0.46
15 8 0.31
16 6 0.23
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (15 bp):
CTAAAATGTAAAGTG
Found at i:23642240 original size:43 final size:43
Alignment explanation
Indices: 23642158--23642304 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 43
23642148 TGAGATATCG
* * * * * * *
23642158 TGTAAGACCGTGCCTGGGACACAGGCCTCGAT-TGAGATTTACC
1 TGTAAGACCATGTCTGGGATAGAGGCATCGATAT-TGATTTACA
* * ** *
23642201 TATAAGACCATGTTTGGGATATTGGCATCG-TATCTGATTT-CG
1 TGTAAGACCATGTCTGGGATAGAGGCATCGATAT-TGATTTACA
* *
23642243 TGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGATAGAGGCATCGATATTGATTTACA
* *
23642286 TGTAAGACCACGTCCGGGA
1 TGTAAGACCATGTCTGGGA
23642305 CGTCGGCATT
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
42 32 0.40
43 48 0.60
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGATAGAGGCATCGATATTGATTTACA
Found at i:23642261 original size:42 final size:43
Alignment explanation
Indices: 23642203--23642304 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
23642193 GATTTACCTA
* ** * *
23642203 TAAGACCATGTTTGGGATATTGGCATCG-TATCTG-ATTTCGTG
1 TAAGACCATGTCTGGGATAGAGGCATCGATAT-TGAATTACATG
*
23642245 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGATAGAGGCATCGATATTGAATTACATG
* *
23642288 TAAGACCACGTCCGGGA
1 TAAGACCATGTCTGGGA
23642305 CGTCGGCATT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGATAGAGGCATCGATATTGAATTACATG
Found at i:23644168 original size:39 final size:40
Alignment explanation
Indices: 23644091--23644237 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
23644081 TAGCTCCTCG
* * *
23644091 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
23644131 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
23644170 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
23644210 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
23644238 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:23644248 original size:80 final size:80
Alignment explanation
Indices: 23644137--23644317 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
23644127 CTCATTCAAT
* * *
23644137 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
23644200 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
23644216 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
23644280 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
23644297 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23644318 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:23644277 original size:40 final size:40
Alignment explanation
Indices: 23644134--23644317 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23644124 TAACTCATTC
* *
23644134 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
23644174 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23644214 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
23644254 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
23644295 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23644318 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:23668028 original size:27 final size:27
Alignment explanation
Indices: 23667991--23668196 Score: 261
Period size: 27 Copynumber: 7.6 Consensus size: 27
23667981 TAAATTGTAC
23667991 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
23668018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23668045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23668071 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23668099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23668127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23668154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23668181 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
23668197 CTCAATATAC
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 134 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23668130 original size:109 final size:108
Alignment explanation
Indices: 23667992--23668196 Score: 322
Period size: 109 Copynumber: 1.9 Consensus size: 108
23667982 AAATTGTACA
* *
23667992 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
23668057 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
23668100 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
23668165 TGCGAGTTGATTATATAGCACTGAGTGTGCGA
65 TGCGAAATGAATATATAGCACTAAGTGTGCGA
23668197 CTCAATATAC
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.19
109 71 0.81
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:23676039 original size:27 final size:27
Alignment explanation
Indices: 23676002--23676206 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
23675992 TAAATTGTAC
*
23676002 AGCACTAAGTGTGCTATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
23676029 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23676056 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23676082 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23676110 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
23676138 AGCACTAAGTGTGCAATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23676165 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23676192 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23676207 GACTCAATAT
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 131 0.86
28 22 0.14
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23682590 original size:26 final size:26
Alignment explanation
Indices: 23682554--23682633 Score: 160
Period size: 26 Copynumber: 3.1 Consensus size: 26
23682544 CTGATGTTTA
23682554 ATTAGAAACCAAGTCAATAGCTCCAC
1 ATTAGAAACCAAGTCAATAGCTCCAC
23682580 ATTAGAAACCAAGTCAATAGCTCCAC
1 ATTAGAAACCAAGTCAATAGCTCCAC
23682606 ATTAGAAACCAAGTCAATAGCTCCAC
1 ATTAGAAACCAAGTCAATAGCTCCAC
23682632 AT
1 AT
23682634 GGCTTAGGAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.20
Consensus pattern (26 bp):
ATTAGAAACCAAGTCAATAGCTCCAC
Found at i:23691714 original size:18 final size:18
Alignment explanation
Indices: 23691691--23691729 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
23691681 GAAAGGATCG
*
23691691 ACAAAATCAATACCCTAA
1 ACAAAATCAATACCCCAA
23691709 ACAAAATCAATACCCCAA
1 ACAAAATCAATACCCCAA
23691727 ACA
1 ACA
23691730 TCGAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.56, C:0.31, G:0.00, T:0.13
Consensus pattern (18 bp):
ACAAAATCAATACCCCAA
Found at i:23698873 original size:38 final size:38
Alignment explanation
Indices: 23698831--23698933 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
23698821 GAAGGCCCAA
* * * *
23698831 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCTG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
*
23698869 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
**
23698907 ATATTTTACCAGCACAAAGCCTGCGGG
1 ATATAATACCAGCACAAAGCCTGCGGG
23698934 TCTTTAAGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
Found at i:23709071 original size:13 final size:13
Alignment explanation
Indices: 23709053--23709077 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23709043 AATCTTTTAT
23709053 TTCTGTATCTGTA
1 TTCTGTATCTGTA
23709066 TTCTGTATCTGT
1 TTCTGTATCTGT
23709078 GTTTCGGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCTGTATCTGTA
Found at i:23712574 original size:25 final size:26
Alignment explanation
Indices: 23712541--23712590 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
23712531 ATATTAAATC
*
23712541 TAAGTATTAACAATAAT-TA-AAATTT
1 TAAGCATTAAC-ATAATATACAAATTT
23712566 TAAGCATTAACATAATATACAAATT
1 TAAGCATTAACATAATATACAAATT
23712591 ATTATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 12 0.55
26 5 0.23
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (26 bp):
TAAGCATTAACATAATATACAAATTT
Found at i:23721611 original size:27 final size:27
Alignment explanation
Indices: 23721581--23721755 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 27
23721571 ATATTGAGTC
* *
23721581 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
23721608 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
*
23721634 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
23721661 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
23721688 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
23721714 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
23721741 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23721756 GTACAATTTA
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 46 0.36
27 82 0.64
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:23721661 original size:53 final size:53
Alignment explanation
Indices: 23721581--23721755 Score: 201
Period size: 53 Copynumber: 3.3 Consensus size: 53
23721571 ATATTGAGTC
* * * * *
23721581 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAT
* ** *
23721634 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAA-T
* **
23721688 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTC-AAT
23721741 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23721756 GTACAATTTA
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 84 0.81
54 20 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAT
Found at i:23729292 original size:27 final size:27
Alignment explanation
Indices: 23729262--23729438 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
23729252 ATATTGAGTC
* *
23729262 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
23729289 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
23729316 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
23729344 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
23729371 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
23729397 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
23729424 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23729439 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 22 0.17
27 83 0.65
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:23729354 original size:55 final size:54
Alignment explanation
Indices: 23729262--23729438 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
23729252 ATATTGAGTC
* * * * *
23729262 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
23729316 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
23729371 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
23729424 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23729439 GTACAATTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 39 0.38
54 23 0.22
55 42 0.40
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:23732991 original size:27 final size:27
Alignment explanation
Indices: 23732946--23733101 Score: 185
Period size: 27 Copynumber: 5.8 Consensus size: 27
23732936 AGGCTGCCAA
* * *
23732946 ATATTGTGACGGAGTCACCAGATACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
23732973 ATATTGTGGCAGAGCCACCAGA-ACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
23732999 ATATATGTGGCAGAGCCACCAGAT-CAG
1 ATAT-TGTGGCAGAGCCACCAGATACAG
* *
23733026 ATAATTGTGGCATAGCCACCAG-GACAG
1 AT-ATTGTGGCAGAGCCACCAGATACAG
*
23733053 ATATATGGGGCAGAGCCACCAGAT-CAG
1 ATAT-TGTGGCAGAGCCACCAGATACAG
*
23733080 ATAATTGTGGCATAGCCACCAG
1 AT-ATTGTGGCAGAGCCACCAG
23733102 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 98 0.88
28 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (27 bp):
ATATTGTGGCAGAGCCACCAGATACAG
Found at i:23733102 original size:54 final size:54
Alignment explanation
Indices: 23732961--23733104 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
23732951 GTGACGGAGT
* * *
23732961 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGGGGCAGAGC
23733015 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGGGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGGGGCAGAGC
23733069 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
23733105 GCTTCCTCTA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGGGGCAGAGC
Found at i:23745054 original size:24 final size:24
Alignment explanation
Indices: 23745002--23745059 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
23744992 GAATGAATTA
23745002 AGGAGAAAATCAAGGAGAAGATTT
1 AGGAGAAAATCAAGGAGAAGATTT
* * *
23745026 GGGAGAAAATCATGGA-AGGATTTT
1 AGGAGAAAATCAAGGAGAAGA-TTT
23745050 AGGAGGAAAA
1 AGGA-GAAAA
23745060 AGGGGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 3 0.11
24 20 0.71
25 5 0.18
ACGTcount: A:0.47, C:0.03, G:0.33, T:0.17
Consensus pattern (24 bp):
AGGAGAAAATCAAGGAGAAGATTT
Found at i:23749558 original size:54 final size:53
Alignment explanation
Indices: 23749418--23749575 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 53
23749408 AAGACCCTGA
* * *
23749418 TTTGTAGAATTACTAAAATACCCCTATTTGTAAAATTACCGAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCGAAATACCCCCAG
* *
23749471 TTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAG
1 TTTGTAAAATTACCAAAATA-CCCCTGTTTGTAAAATTACCGAAATACCCCCAG
* * * *
23749525 TTTGTAAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATGCCCC
1 TTTGTAAAATTACCAAAATACCCCTGT-TTGTAAAATTACCGAAATACCCC
23749576 TTAGGGTAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 23 0.25
54 69 0.75
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCGAAATACCCCCAG
Found at i:23749563 original size:27 final size:27
Alignment explanation
Indices: 23749418--23749547 Score: 199
Period size: 27 Copynumber: 4.9 Consensus size: 27
23749408 AAGACCCTGA
* * *
23749418 TTTGTAGAATTACTAAAATACCCCTA-
1 TTTGTAAAATTACCAAAATACCCCCAG
*
23749444 TTTGTAAAATTACCGAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCAG
23749471 TTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCAG
**
23749498 TTTGTAAAATTACTGAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCAG
23749525 TTTGTAAAATTACCAAAATACCC
1 TTTGTAAAATTACCAAAATACCC
23749548 TTGTAGTGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 22 0.23
27 72 0.77
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCCCAG
Found at i:23760831 original size:40 final size:40
Alignment explanation
Indices: 23760760--23760858 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
23760750 ATCGGTTATT
* *
23760760 TATGGCACTTAGTGTGCGATACGACATAGCTT-TGGCTATA
1 TATGGCACTTAGTGTGTGATACGACAAAGCTTCT-GCTATA
** * *
23760800 TATGGCACTTAGTGTGTGATTTGAGAAAGCTTCTGCTATG
1 TATGGCACTTAGTGTGTGATACGACAAAGCTTCTGCTATA
* *
23760840 TACGACACTTAGTGTGTGA
1 TATGGCACTTAGTGTGTGA
23760859 GATATCTAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
40 49 0.98
41 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (40 bp):
TATGGCACTTAGTGTGTGATACGACAAAGCTTCTGCTATA
Found at i:23770825 original size:42 final size:41
Alignment explanation
Indices: 23770779--23770900 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 41
23770769 CTTACATGGG
* *
23770779 ATCTCACATTGATGCCATATCCCAGATATGGTCTTATACAAA
1 ATCTCA-ATTGATGCCATATCCTAGATATGGTCTTACACAAA
* * * **
23770821 ATCTCATTTCGATGTCATGTCCTAGACGTGGTCTTACACAAA
1 ATCTCAATT-GATGCCATATCCTAGATATGGTCTTACACAAA
** *
23770863 ATCTCATATCAACGCCATATCCTAGATATGGTCTTACA
1 ATCTCA-ATTGATGCCATATCCTAGATATGGTCTTACA
23770901 TGATAACCCA
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
41 2 0.03
42 60 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (41 bp):
ATCTCAATTGATGCCATATCCTAGATATGGTCTTACACAAA
Found at i:23770978 original size:48 final size:48
Alignment explanation
Indices: 23770876--23770989 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
23770866 TCATATCAAC
* * * ***
23770876 GCCATATCCTAGATATGGTCTTACATGATAACCCATACCGATGTTGAT
1 GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
**
23770924 ATCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
1 GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
23770972 GCCATATCCCAGA-ATGGT
1 GCCATATCCCAGATATGGT
23770990 TTTATACACA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 5 0.09
48 51 0.91
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
Found at i:23773825 original size:43 final size:43
Alignment explanation
Indices: 23773735--23773890 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
23773725 ATATTGTACA
* * * * **
23773735 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATGTTA
1 ATGCCAACTGTCCCA-ACATGGTCTTACACGAAATCACATATCG
*
23773778 ATGCC-ACTGTCCCAGACAGGGTCTTACAC-AAATCACA-ATTACG
1 ATGCCAACTGTCCCA-ACATGGTCTTACACGAAATCACATA-T-CG
* *
23773821 ATGCCGA-TGTCCCAAACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACTGTCCC-AACATGGTCTTACACGAAATCACATATCG
23773864 ATGCCAAC-GTCCCAACATGGTCTTACA
1 ATGCCAACTGTCCCAACATGGTCTTACA
23773891 TAAGAACACA
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
42 23 0.24
43 59 0.63
44 11 0.12
45 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACTGTCCCAACATGGTCTTACACGAAATCACATATCG
Found at i:23774536 original size:32 final size:32
Alignment explanation
Indices: 23774500--23774565 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
23774490 AAAACGTGTT
*
23774500 AATCTAAAACATATCTTTCATATTTCATCATC
1 AATCTAAAACATATATTTCATATTTCATCATC
23774532 AATCTAAAACATATATTTCATATTTCATCATC
1 AATCTAAAACATATATTTCATATTTCATCATC
23774564 AA
1 AA
23774566 ACAACAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (32 bp):
AATCTAAAACATATATTTCATATTTCATCATC
Found at i:23780631 original size:43 final size:42
Alignment explanation
Indices: 23780463--23780633 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 42
23780453 ATATCGTACA
* * * *
23780463 ATGCCAACGTCCCAGACGTGATCTTACATGTAATCACATGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * *
23780506 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCACA-ATTACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATA-T-CG
* * * *
23780549 ATTCCGATGTCACAGACATGGTCTT-CCTCGAAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAT-G-AATCACATATCG
*
23780592 ATGCCAATGTCCCAGACATGGCCTTACATGAGATCACATATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGA-ATCACATATC
23780634 AGAAATCCTA
Statistics
Matches: 102, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 10 0.10
43 81 0.79
44 10 0.10
45 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
Found at i:23782397 original size:21 final size:21
Alignment explanation
Indices: 23782372--23782418 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23782362 TTTTATCAAA
*
23782372 AGAGAAAATCCATATATATAG
1 AGAGAAAATCCATACATATAG
***
23782393 AGAGATTTTCCATACATATAG
1 AGAGAAAATCCATACATATAG
23782414 AGAGA
1 AGAGA
23782419 TTTCTTCAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.26
Consensus pattern (21 bp):
AGAGAAAATCCATACATATAG
Found at i:23782419 original size:21 final size:21
Alignment explanation
Indices: 23782380--23782421 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
23782370 AAAGAGAAAA
*
23782380 TCCATATATATAGAGAGATTT
1 TCCATACATATAGAGAGATTT
23782401 TCCATACATATAGAGAGATTT
1 TCCATACATATAGAGAGATTT
23782422 CTTCAAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (21 bp):
TCCATACATATAGAGAGATTT
Found at i:23785911 original size:15 final size:16
Alignment explanation
Indices: 23785893--23785927 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
23785883 ACTTATATAT
*
23785893 ACCAAAACCA-AATCA
1 ACCAAAACCACAACCA
23785908 ACCAAAACCACAACCA
1 ACCAAAACCACAACCA
23785924 ACCA
1 ACCA
23785928 TAATCATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.57, C:0.40, G:0.00, T:0.03
Consensus pattern (16 bp):
ACCAAAACCACAACCA
Found at i:23787289 original size:43 final size:41
Alignment explanation
Indices: 23787179--23787302 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 41
23787169 TCTTACATGT
* * *
23787179 AATCACATGTCGATGCCACTGTCCTAGACAGGGTCTTACACA
1 AATCACATATCGATGCCAC-GTCCCAGACATGGTCTTACACA
* *
23787221 AATCACA-ATTACGATGCCGATGTCCCAGACATGGTCTTACTCGA
1 AATCACATA-T-CGATGCC-ACGTCCCAGACATGGTCTTACAC-A
* *
23787265 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTA
1 AATCACATATCGATGCC-ACGTCCCAGACATGGTCTTA
23787303 TATGAGAACA
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
42 8 0.12
43 49 0.72
44 10 0.15
45 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (41 bp):
AATCACATATCGATGCCACGTCCCAGACATGGTCTTACACA
Found at i:23788221 original size:16 final size:18
Alignment explanation
Indices: 23788188--23788223 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23788178 TTTAATTTTT
23788188 TTATAACATATATTATTA
1 TTATAACATATATTATTA
23788206 TTATAACAT-T-TTATTA
1 TTATAACATATATTATTA
23788222 TT
1 TT
23788224 TATTTACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATAACATATATTATTA
Found at i:23790217 original size:53 final size:53
Alignment explanation
Indices: 23790144--23790248 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
23790134 AGGTCTTGTT
23790144 TCTTGCATCCAGTGGATCATCCAATCTATTTTCACGGTCTCACTCATTGTTTG
1 TCTTGCATCCAGTGGATCATCCAATCTATTTTCACGGTCTCACTCATTGTTTG
*
23790197 TCTTGCATCCAGTGGATCATCCAATCTATTTTCATGGTCTCACTCATTGTTT
1 TCTTGCATCCAGTGGATCATCCAATCTATTTTCACGGTCTCACTCATTGTTT
23790249 CTTTCCAATC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (53 bp):
TCTTGCATCCAGTGGATCATCCAATCTATTTTCACGGTCTCACTCATTGTTTG
Found at i:23792205 original size:40 final size:40
Alignment explanation
Indices: 23792161--23792380 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
23792151 GGTCACTAGT
* *
23792161 ACAAATGCCTTCGGGACTTAGCCCGG-ATATAATAACTCCC
1 ACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGC
* *
23792201 ACAAATGCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
* *
23792241 ACAAAAGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
*
23792281 ACAAATGCCTTCGGGACTTAGCCCGGAATTTGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
* * *
23792321 ACAAATGCCTTCGGGACTTAGCCCGGAATTAATCACTAGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
* *
23792361 ACAAATGTCTTCGAGACTTA
1 ACAAATGCCTTCGGGACTTA
23792381 ACCCCGTTAG
Statistics
Matches: 162, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 160 0.99
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
Found at i:23796310 original size:79 final size:79
Alignment explanation
Indices: 23796227--23796397 Score: 254
Period size: 79 Copynumber: 2.2 Consensus size: 79
23796217 GGACTAAGAT
* *
23796227 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAT
*
23796291 AATCCGGGTTAAGTC
66 AA-CCGGGCTAAGTC
* * * *
23796306 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTACGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAT
*
23796371 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
23796385 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23796398 AACGAGGAGC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 81 0.98
80 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAT
AACCGGGCTAAGTC
Found at i:23796403 original size:40 final size:40
Alignment explanation
Indices: 23796174--23796397 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
23796164 TTGAATGATG
* * * * *
23796174 TCCGGGCTAAGTCCCGAAGG-GTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23796214 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23796254 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23796293 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23796333 TCCGGGTTAAGT-CCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23796373 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23796398 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 67 0.42
40 86 0.53
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23796411 original size:40 final size:40
Alignment explanation
Indices: 23796227--23796403 Score: 202
Period size: 39 Copynumber: 4.5 Consensus size: 40
23796217 GGACTAAGAT
* * * *
23796227 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTACGAGTTACTATA-ACCGGGTTAAGTC
* *
23796266 CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGTACGAGTTACTATAA-CCGGGTTAAGTC
*
23796306 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGT-
1 CCGAAGGCATTTGTACGAGTTACTATAA-CCGGGTTAAGTC
* *
23796345 CCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTACGAGTTACTATAACCGGGTTAAGTC
*
23796385 CCGAAGGCATTTGAACGAG
1 CCGAAGGCATTTGTACGAG
23796404 GAGCTATATC
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 66 0.53
40 59 0.47
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTACGAGTTACTATAACCGGGTTAAGTC
Found at i:23796415 original size:79 final size:79
Alignment explanation
Indices: 23796213--23796430 Score: 221
Period size: 79 Copynumber: 2.8 Consensus size: 79
23796203 AAGTGACCAT
* ** * * *
23796213 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCGAAGGCAT
*
23796276 TGGTGCGAGTTACTAA
64 TGGTACGAGTTACTAA
* ** * *
23796292 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTG
23796357 GTACGAGTTACTATA
66 GTACGAGTTACTA-A
* * *
23796372 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
23796431 TACGTGATTT
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 7 0.06
79 111 0.93
80 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTG
GTACGAGTTACTAA
Found at i:23798001 original size:32 final size:32
Alignment explanation
Indices: 23797960--23798023 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
23797950 ACGACTTCTG
23797960 ACGATCTGATGCTGCCTTCAGACGTTCATGAA
1 ACGATCTGATGCTGCCTTCAGACGTTCATGAA
23797992 ACGATCTGATGCTGCCTTCAGACGTTCATGAA
1 ACGATCTGATGCTGCCTTCAGACGTTCATGAA
23798024 TTATTTTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (32 bp):
ACGATCTGATGCTGCCTTCAGACGTTCATGAA
Found at i:23803734 original size:40 final size:40
Alignment explanation
Indices: 23803669--23803933 Score: 311
Period size: 40 Copynumber: 6.7 Consensus size: 40
23803659 GGATATAACC
* * * * *
23803669 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
23803708 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* * *
23803748 ACTCCCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * * *
23803788 ACTCGCACAAAAGCCTTTGGGATTTAGCCCAGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
23803828 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
23803868 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
23803908 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
23803934 ACCCTGTTAG
Statistics
Matches: 193, Mismatches: 31, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
39 7 0.04
40 184 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:23814362 original size:27 final size:27
Alignment explanation
Indices: 23814331--23814430 Score: 166
Period size: 27 Copynumber: 3.7 Consensus size: 27
23814321 CGTACCTAAA
23814331 CCTTATGTGATAAAATGACGATTTTGC
1 CCTTATGTGATAAAATGACGATTTTGC
* *
23814358 CCTTATATGATAAAATGACAATTTTGC
1 CCTTATGTGATAAAATGACGATTTTGC
23814385 CCTTATGTGATAAAATGACGATATTT-C
1 CCTTATGTGATAAAATGACGAT-TTTGC
23814412 CCTTATGTGATAAAATGAC
1 CCTTATGTGATAAAATGAC
23814431 TGAAATACCC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.96
28 3 0.04
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (27 bp):
CCTTATGTGATAAAATGACGATTTTGC
Found at i:23814441 original size:27 final size:27
Alignment explanation
Indices: 23814331--23814522 Score: 105
Period size: 27 Copynumber: 7.1 Consensus size: 27
23814321 CGTACCTAAA
** *
23814331 CCTTATGTGATAAAATGAC-GATTTTGC
1 CCTTATGTGATAAAATGACTGA-AATAC
* * *
23814358 CCTTATATGATAAAATGAC--AATTTTGC
1 CCTTATGTGATAAAATGACTGAA--ATAC
* *
23814385 CCTTATGTGATAAAATGAC-GATATTTC
1 CCTTATGTGATAAAATGACTGA-AATAC
23814412 CCTTATGTGATAAAATGACTGAAATAC
1 CCTTATGTGATAAAATGACTGAAATAC
* *
23814439 CCTTATAG-GGTAAAATAACTGAAATAAC
1 CCTTAT-GTGATAAAATGACTGAAAT-AC
* * *
23814467 CC-TATAG-GGTAGAATAACTGAAATACC
1 CCTTAT-GTGATAAAATGACTGAAATA-C
* *
23814494 CCTGTA-G-GGTAAAATGACTGTAATAC
1 CCT-TATGTGATAAAATGACTGAAATAC
23814520 CCT
1 CCT
23814523 AGTAAGGTAA
Statistics
Matches: 143, Mismatches: 12, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.04
27 126 0.88
28 8 0.06
29 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
CCTTATGTGATAAAATGACTGAAATAC
Found at i:23814442 original size:54 final size:53
Alignment explanation
Indices: 23814331--23814444 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 53
23814321 CGTACCTAAA
* *
23814331 CCTTATGTGATAAAATGACGATTTTGCCCTTATATGATAAAATGACAATTTTGC
1 CCTTATGTGATAAAATGACGATTTTGCCCTTATATGATAAAATGACAA-TATAC
*
23814385 CCTTATGTGATAAAATGACGATATTT-CCCTTATGTGATAAAATGACTGAA-ATAC
1 CCTTATGTGATAAAATGACGAT-TTTGCCCTTATATGATAAAATGAC--AATATAC
23814439 CCTTAT
1 CCTTAT
23814445 AGGGTAAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
54 49 0.91
55 3 0.06
56 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (53 bp):
CCTTATGTGATAAAATGACGATTTTGCCCTTATATGATAAAATGACAATATAC
Found at i:23814453 original size:54 final size:54
Alignment explanation
Indices: 23814341--23814511 Score: 129
Period size: 54 Copynumber: 3.2 Consensus size: 54
23814331 CCTTATGTGA
* * * *
23814341 TAAAATGACGAT-TTTGCCCTTATATGATAAAATGAC--AATTTTGCCCTTAT-GTGA
1 TAAAATGACGATATTT-CCCTTATGTGATAAAATGACTGAA--ATACCCTTATAG-GG
23814395 TAAAATGACGATATTTCCCTTATGTGATAAAATGACTGAAATACCCTTATAGGG
1 TAAAATGACGATATTTCCCTTATGTGATAAAATGACTGAAATACCCTTATAGGG
* * ** * * * * *
23814449 TAAAATAACTGAAATAACCC-TATAG-GGTAGAATAACTGAAATACCCCTGTAGGG
1 TAAAATGAC-GATATTTCCCTTAT-GTGATAAAATGACTGAAATACCCTTATAGGG
23814503 TAAAATGAC
1 TAAAATGAC
23814512 TGTAATACCC
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
54 83 0.86
55 12 0.12
56 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (54 bp):
TAAAATGACGATATTTCCCTTATGTGATAAAATGACTGAAATACCCTTATAGGG
Found at i:23814531 original size:27 final size:26
Alignment explanation
Indices: 23814422--23814538 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 26
23814412 CCTTATGTGA
23814422 TAAAATGACTGAAATACCCTTATAGGG
1 TAAAATGACTGAAATACCC-TATAGGG
*
23814449 TAAAATAACTGAAATAACCCTATAGGG
1 TAAAATGACTGAAAT-ACCCTATAGGG
* * *
23814476 TAGAATAACTGAAATACCCCTGTAGGG
1 TAAAATGACTGAAATA-CCCTATAGGG
* *
23814503 TAAAATGACTGTAATACCCTAGTAAGG
1 TAAAATGACTGAAATACCCTA-TAGGG
23814530 TAAAATGAC
1 TAAAATGAC
23814539 AGATTTGTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.06
27 70 0.89
28 4 0.05
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.24
Consensus pattern (26 bp):
TAAAATGACTGAAATACCCTATAGGG
Found at i:23817862 original size:27 final size:27
Alignment explanation
Indices: 23817831--23817929 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
23817821 CATACCTGAA
*
23817831 CCTTATGTGATAAAATGAAAATTTTGC
1 CCTTATGTGATAAAATGAAGATTTTGC
* *
23817858 CCTTATATGATAAAA-CAACGATTTTGC
1 CCTTATGTGATAAAATGAA-GATTTTGC
* * *
23817885 CCTAATGTGATAAAATGATGATTTTAC
1 CCTTATGTGATAAAATGAAGATTTTGC
23817912 CCTTATGTGATAAAATGA
1 CCTTATGTGATAAAATGA
23817930 CTGAAATACC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.03
27 58 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35
Consensus pattern (27 bp):
CCTTATGTGATAAAATGAAGATTTTGC
Found at i:23817939 original size:27 final size:27
Alignment explanation
Indices: 23817884--23817968 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
23817874 AACGATTTTG
* **
23817884 CCCTAATGTGATAAAATGA-TGATTTTA
1 CCCTTATGTGATAAAATGACTGA-AATA
23817911 CCCTTATGTGATAAAATGACTGAAATA
1 CCCTTATGTGATAAAATGACTGAAATA
* * *
23817938 CCCTTATATGGGTAAAATGACCGAAATA
1 CCCTTATGT-GATAAAATGACTGAAATA
23817966 CCC
1 CCC
23817969 CCATAGGGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 28 0.56
28 22 0.44
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACTGAAATA
Found at i:23818019 original size:27 final size:27
Alignment explanation
Indices: 23817922--23818019 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
23817912 CCTTATGTGA
*
23817922 TAAAATGACTGAAATACCCTTATATGGG
1 TAAAATGACTGAAATACCCCTATA-GGG
* *
23817950 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCCTATAGGG
*
23817977 TAAAATGA-TCGAAATACCCCTGTAGGG
1 TAAAATGACT-GAAATACCCCTATAGGG
*
23818004 TAAAATGACTGTAATA
1 TAAAATGACTGAAATA
23818020 TCTCGGTAAG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 39 0.64
28 22 0.36
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAGGG
Found at i:23818033 original size:54 final size:55
Alignment explanation
Indices: 23817922--23818039 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 55
23817912 CCTTATGTGA
* *
23817922 TAAAATGACTGAAATACCCTTATATGGGTAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCCTATATGGGTAAAATGACCGAAATACCCCCATAAGG
* * * * * **
23817977 TAAAATGA-TCGAAATACCCCTGTA-GGGTAAAATGACTGTAATATCTCGGTAAGG
1 TAAAATGACT-GAAATACCCCTATATGGGTAAAATGACCGAAATACCCCCATAAGG
23818031 TAAAATGAC
1 TAAAATGAC
23818040 AGATTTGCTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
54 32 0.62
55 20 0.38
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (55 bp):
TAAAATGACTGAAATACCCCTATATGGGTAAAATGACCGAAATACCCCCATAAGG
Found at i:23818119 original size:23 final size:22
Alignment explanation
Indices: 23818079--23818123 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
23818069 TTTGAGTATG
23818079 CCATGTTATATGTATGTTGCAT
1 CCATGTTATATGTATGTTGCAT
23818101 CCATGTATGATAT-TATGTTGCAT
1 CCATGT-T-ATATGTATGTTGCAT
23818124 TGCATGGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.44
Consensus pattern (22 bp):
CCATGTTATATGTATGTTGCAT
Found at i:23822211 original size:209 final size:209
Alignment explanation
Indices: 23821851--23822250 Score: 728
Period size: 209 Copynumber: 1.9 Consensus size: 209
23821841 CTTTCTTGAT
23821851 CTAAATATTATTAAAGTTAACTTATTTAATCATCTCTCTATTCAATTTAGTCCAAAATACACTTT
1 CTAAATATTATTAAAGTTAACTTATTTAATCATCTCTCTATTCAATTTAGTCCAAAATACACTTT
*
23821916 AATACATTTTTACACAATTGCCCCTAATGTTTCACATCTTTTACAGTTTAGTCCTTATTTCATAA
66 AAGACATTTTTACACAATTGCCCCTAATGTTTCACATCTTTTACAGTTTAGTCCTTATTTCATAA
*
23821981 AAACACAAATTCATGCAATTCAATACTAACCCATGCTAGCTGAATTATATATAAGTCCCTAAACC
131 AAACACAAATTCATGCAATTCAATACTAACCCATGCTAGCTGAATTACATATAAGTCCCTAAACC
23822046 CTAAACCTTAAACC
196 CTAAACCTTAAACC
* *
23822060 CTAAATATTATTAAAGTTAACTTATTTAATCATCTCTCTATTCAATTTGGTCCAAAATTCACTTT
1 CTAAATATTATTAAAGTTAACTTATTTAATCATCTCTCTATTCAATTTAGTCCAAAATACACTTT
* * *
23822125 AAGGCATTTTTACACAATTGCCCCTAATGTTTCAGATCTTTTACAGTTTAGTCCTTGTTTCATAA
66 AAGACATTTTTACACAATTGCCCCTAATGTTTCACATCTTTTACAGTTTAGTCCTTATTTCATAA
*
23822190 AAATACAAATTCATGCAATTCAATACTAACCCATGCTAGCTGAATTACATATAAGTCCCTA
131 AAACACAAATTCATGCAATTCAATACTAACCCATGCTAGCTGAATTACATATAAGTCCCTA
23822251 GCAACCCATA
Statistics
Matches: 183, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 183 1.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (209 bp):
CTAAATATTATTAAAGTTAACTTATTTAATCATCTCTCTATTCAATTTAGTCCAAAATACACTTT
AAGACATTTTTACACAATTGCCCCTAATGTTTCACATCTTTTACAGTTTAGTCCTTATTTCATAA
AAACACAAATTCATGCAATTCAATACTAACCCATGCTAGCTGAATTACATATAAGTCCCTAAACC
CTAAACCTTAAACC
Found at i:23822386 original size:21 final size:20
Alignment explanation
Indices: 23822358--23822396 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
23822348 CAAAACTTGT
23822358 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
23822378 ATAATCTATTATCAAACAT
1 ATAA-CTATCATCAAACAT
23822397 AAAAACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:23829349 original size:143 final size:143
Alignment explanation
Indices: 23829091--23829382 Score: 568
Period size: 143 Copynumber: 2.0 Consensus size: 143
23829081 AAATCATCAA
23829091 TTTGAACATATCAGTGTGTAATTCATTTAACTAGAAAACCTCACATTTTCTATCATAATCTTATG
1 TTTGAACATATCAGTGTGTAATTCATTTAACTAGAAAACCTCACATTTTCTATCATAATCTTATG
23829156 TATGTACTTCATAACTTATTCGATTTAAGCTTATACAGTTCATGTACATACATGTACCATCTCGT
66 TATGTACTTCATAACTTATTCGATTTAAGCTTATACAGTTCATGTACATACATGTACCATCTCGT
23829221 ATTCATTTACTTG
131 ATTCATTTACTTG
23829234 TTTGAACATATCAGTGTGTAATTCATTTAACTAGAAAACCTCACATTTTCTATCATAATCTTATG
1 TTTGAACATATCAGTGTGTAATTCATTTAACTAGAAAACCTCACATTTTCTATCATAATCTTATG
*
23829299 TATGTACTTCATAACTTATTCGATTTAAGCTTATACGGTTCATGTACATACATGTACCATCTCGT
66 TATGTACTTCATAACTTATTCGATTTAAGCTTATACAGTTCATGTACATACATGTACCATCTCGT
23829364 ATTCATTTACTTG
131 ATTCATTTACTTG
23829377 -TTGAAC
1 TTTGAAC
23829383 CATTTGAAAT
Statistics
Matches: 148, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
142 6 0.04
143 142 0.96
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (143 bp):
TTTGAACATATCAGTGTGTAATTCATTTAACTAGAAAACCTCACATTTTCTATCATAATCTTATG
TATGTACTTCATAACTTATTCGATTTAAGCTTATACAGTTCATGTACATACATGTACCATCTCGT
ATTCATTTACTTG
Found at i:23829679 original size:17 final size:17
Alignment explanation
Indices: 23829629--23829679 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
23829619 TGGAAACATG
*
23829629 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
23829646 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
23829665 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
23829680 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:23829679 original size:22 final size:21
Alignment explanation
Indices: 23829651--23829708 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
23829641 ATGCAATCTT
*
23829651 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
23829672 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
23829695 AGATTTGATTTGTA
1 AGATATGATTTGTA
23829709 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:23834776 original size:17 final size:17
Alignment explanation
Indices: 23834724--23834776 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 17
23834714 TATGGAAACA
23834724 TAATCTTCA-AAGATATG
1 TAATCTT-AGAAGATATG
*
23834741 CAATCTTAGATATGATATG
1 TAATCTTAGA-A-GATATG
23834760 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
23834777 ATTTTGTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 1 0.03
17 13 0.42
18 2 0.06
19 15 0.48
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:23834776 original size:22 final size:21
Alignment explanation
Indices: 23834748--23834805 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
23834738 ATGCAATCTT
* *
23834748 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATATTAG
23834769 AAGATATGATTTTGTAATATTAG
1 -AGATATGA-TTTGTAATATTAG
*
23834792 AGATTTGATTTGTA
1 AGATATGATTTGTA
23834806 GATACACTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.47
23 11 0.34
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATATTAG
Found at i:23843741 original size:40 final size:39
Alignment explanation
Indices: 23843638--23843851 Score: 272
Period size: 40 Copynumber: 5.4 Consensus size: 39
23843628 GATGATAACT
*
23843638 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-TCC
*
23843678 GGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
* * *
23843717 GGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
*
23843757 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
*
23843797 GGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCC
* *
23843837 -GGCTAAATTCCGAAG
1 GGGCTAAGTCCCGAAG
23843852 ATACTTGGTT
Statistics
Matches: 160, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 48 0.30
40 112 0.70
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCC
Found at i:23843850 original size:119 final size:119
Alignment explanation
Indices: 23843632--23843851 Score: 311
Period size: 119 Copynumber: 1.8 Consensus size: 119
23843622 TATTTGGATG
* * *
23843632 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
23843697 TTGTGCGAGCTACTATATCCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGCTACTATATCCGGGCCAAATCCCGAAGGCATTTGTGCGAGTTACT
*
23843751 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
23843815 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAG
64 ATTTGAGCAAGCTA-CTATATCCGGGCCAAATCCCGAAG
23843852 ATACTTGGTT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 61 0.69
120 26 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGCTACTATATCCGGGCCAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23845968 original size:14 final size:14
Alignment explanation
Indices: 23845931--23845974 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
23845921 AAAAATAATG
23845931 AAGAACAAAAAGAA
1 AAGAACAAAAAGAA
23845945 AAGAAGC-AAAAGAA
1 AAGAA-CAAAAAGAA
*
23845959 AGGGAACAAAAAGAA
1 A-AGAACAAAAAGAA
23845974 A
1 A
23845975 CGTCCAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (14 bp):
AAGAACAAAAAGAA
Found at i:23847731 original size:21 final size:21
Alignment explanation
Indices: 23847698--23847741 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
23847688 ACCAAGAGTC
* *
23847698 AAAAGGAGCCAAAACTGAGCCA
1 AAAAGGAGACAAAACGGA-CCA
23847720 AAAAGG-GACAAAACGGACCA
1 AAAAGGAGACAAAACGGACCA
23847740 AA
1 AA
23847742 TTGAGAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.55, C:0.20, G:0.23, T:0.02
Consensus pattern (21 bp):
AAAAGGAGACAAAACGGACCA
Found at i:23853259 original size:47 final size:47
Alignment explanation
Indices: 23853205--23854240 Score: 1857
Period size: 47 Copynumber: 21.9 Consensus size: 47
23853195 TAGTATGGCG
* *
23853205 TAATGGCCGATGTCATGAATGTGAAAGTGTATAAATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853252 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23853301 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853348 TAATGGCCGATGTGAT-AATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23853396 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853443 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853490 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853537 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853584 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853631 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23853680 TAATGG-CGATGTGATGAA--TGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853724 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853771 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853818 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23853865 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23853914 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23853963 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23854010 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23854057 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23854104 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23854151 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
23854197 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
23854241 TCCCGAAGGG
Statistics
Matches: 964, Mismatches: 12, Indels: 26
0.96 0.01 0.03
Matches are distributed among these distances:
44 24 0.02
45 12 0.01
46 58 0.06
47 647 0.67
48 46 0.05
49 177 0.18
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:23854415 original size:37 final size:37
Alignment explanation
Indices: 23854359--23854437 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23854349 CCGAGCTCTA
* * *
23854359 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23854396 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23854433 AAGAC
1 AAGAC
23854438 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23855706 original size:40 final size:40
Alignment explanation
Indices: 23855651--23855839 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
23855641 GAGAATTGAG
*
23855651 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
23855691 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
23855731 AGTGATGTATCTGAGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
23855771 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* *
23855811 GGTGTTATATCCGGGCT-AGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
23855840 TAATCATGCT
Statistics
Matches: 131, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 9 0.07
40 122 0.93
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:23856057 original size:24 final size:25
Alignment explanation
Indices: 23856018--23856067 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
23856008 GTGTATTAAC
23856018 GAATGAATAAGAGCACTATGTATGT
1 GAATGAATAAGAGCACTATGTATGT
* * *
23856043 GAAT-AATTAGAGCACTGTGTGTGT
1 GAATGAATAAGAGCACTATGTATGT
23856067 G
1 G
23856068 CGAATTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTATGT
Found at i:23866638 original size:39 final size:40
Alignment explanation
Indices: 23866577--23866761 Score: 268
Period size: 39 Copynumber: 4.7 Consensus size: 40
23866567 ATTTGGATTG
* * *
23866577 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23866617 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23866656 ATATCCGGGCCAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
23866695 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23866735 ATAACCGGGCTAAGTCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATT
23866762 GAGCAAGTAG
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 70 0.53
40 61 0.47
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23866719 original size:79 final size:78
Alignment explanation
Indices: 23866577--23866762 Score: 266
Period size: 79 Copynumber: 2.4 Consensus size: 78
23866567 ATTTGGATTG
* * *
23866577 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
*
23866642 TTGTGCGAGCTACT
65 TTGTGCAAGCTACT
* * *
23866656 ATATCCGGGCCAAGTCCCGAAGGCATTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCA
*
23866720 TTTGTGCAAGTTACT
64 TTTGTGCAAGCTACT
23866735 ATAACCGGGCTAAGTCCCGAAGGCATTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTG
23866763 AGCAAGTAGC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 2 0.02
78 22 0.23
79 71 0.75
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATT
TGTGCAAGCTACT
Found at i:23868885 original size:14 final size:14
Alignment explanation
Indices: 23868848--23868891 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
23868838 AAAAATAATG
23868848 AAGAACAAAAAGAA
1 AAGAACAAAAAGAA
23868862 AAGAAGC-AAAAGAA
1 AAGAA-CAAAAAGAA
*
23868876 AGGGAACAAAAAGAA
1 A-AGAACAAAAAGAA
23868891 A
1 A
23868892 CGTCCAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (14 bp):
AAGAACAAAAAGAA
Found at i:23876160 original size:47 final size:47
Alignment explanation
Indices: 23876088--23877124 Score: 1655
Period size: 47 Copynumber: 21.9 Consensus size: 47
23876078 TAGTATGGCG
* *
23876088 TAATGG-CGATGTCAT-AATGTGAAAGTGTATAAATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876133 TAAT-GCCGATGTGATGAAATGTGAAAGTGTATATATATTGTG-TAAGGCC
1 TAATGGCCGATGTGATG-AATGTGAAAGTG--TATATA-TGTGATAAGGCC
*
23876182 TAATGGCC-ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23876228 TAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23876277 TAATGG-CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23876323 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876370 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876417 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876464 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23876513 TAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
23876562 TAATGGCGGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876609 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA-GCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876655 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876702 TAATGGCCGATTGTGATGAATGTGAAAGTGTATATATGTGATAA-GCC
1 TAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
23876749 TAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTG-AAA-GTGTATATATGTGATAAGGCC
*
23876798 TAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23876847 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23876894 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23876943 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23876990 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23877037 TAATGGCCGATGTGATGAATGTG-AA-TGTATATATGTGA-CAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
23877081 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
23877125 TCCCGAAGGG
Statistics
Matches: 936, Mismatches: 30, Indels: 50
0.92 0.03 0.05
Matches are distributed among these distances:
44 24 0.03
45 31 0.03
46 118 0.13
47 417 0.45
48 82 0.09
49 257 0.27
50 7 0.01
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:23876658 original size:285 final size:283
Alignment explanation
Indices: 23876088--23877124 Score: 1711
Period size: 285 Copynumber: 3.7 Consensus size: 283
23876078 TAGTATGGCG
* *
23876088 TAATGG-CGATGTCAT-AATGTGAAAGTGTATAAATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-
*
23876150 AATGTGAAAGTGTATATATATTGTG-TAAGGCCTAATGGCC-ATGTGATGAATATGAAAGTGTAT
65 AATGTGAAAGTG--TATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
23876213 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCT
127 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
23876278 AATGGCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
192 AATGGCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
23876343 ATGAAAGTGTATATATGTGATAAGGCC
257 GTGAAAGTGTATATATGTGATAAGGCC
23876370 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23876435 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
23876500 ATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCTAA
129 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
23876565 TGGCGGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
194 TGGC-GATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
23876630 TGAAAGTGTATATATGTGATAA-GCC
258 TGAAAGTGTATATATGTGATAAGGCC
23876655 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATTGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATG
*
23876720 AATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATA
65 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAA-GTGTATA
* *
23876784 TATGTGATAGGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
128 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * *
23876849 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCTGATGTGATGAAT
193 ATGG-CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
23876914 GTGAAAGTGTATATATATGTGATAAGGCC
257 GTGAAAGTG--TATATATGTGATAAGGCC
23876943 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23877008 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA-TGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
23877071 GTGA-CAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
23877125 TCCCGAAGGG
Statistics
Matches: 717, Mismatches: 22, Indels: 33
0.93 0.03 0.04
Matches are distributed among these distances:
281 14 0.02
282 28 0.04
283 58 0.08
284 57 0.08
285 305 0.43
286 120 0.17
287 49 0.07
288 86 0.12
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (283 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCC
Done.