Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 78 of 332
Found at i:24205722 original size:19 final size:21
Alignment explanation
Indices: 24205679--24205728 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 21
24205669 TGTCCCTTTT
24205679 TGCATT-CATTTCATTCATCA
1 TGCATTACATTTCATTCATCA
*
24205699 -ACATTACATTTCA-TCAT-A
1 TGCATTACATTTCATTCATCA
*
24205717 TGCATTAAATTT
1 TGCATTACATTT
24205729 TAGAAAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 1 0.04
19 17 0.68
20 7 0.28
ACGTcount: A:0.32, C:0.20, G:0.04, T:0.44
Consensus pattern (21 bp):
TGCATTACATTTCATTCATCA
Found at i:24211116 original size:43 final size:43
Alignment explanation
Indices: 24210945--24211119 Score: 144
Period size: 43 Copynumber: 4.1 Consensus size: 43
24210935 TCACACATAT
* * *
24210945 CATA-CAATGCCAACGTCCCAGACGTGGTTTTACATGTAATCA
1 CATATCAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCA
* * * * * *
24210987 TATCTCGATGCCACTGTCTCAGATAG-GGTCTTACACG-AATCA
1 CATATCAATGCCAATGTCCCAGA-CGTGGTCTTACACGTAATCA
* * * * *
24211029 AATA-CGATGCCGATGTCCCGGACATGGTCTTACACGTAATCA
1 CATATCAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCA
** *
24211071 CATATCAATGCCAATGTCCCAGGTGTGGTCTTACATG-AATACA
1 CATATCAATGCCAATGTCCCAGACGTGGTCTTACACGTAAT-CA
24211114 CATATC
1 CATATC
24211120 GAAAATCCTA
Statistics
Matches: 102, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
41 25 0.25
42 20 0.20
43 56 0.55
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
CATATCAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCA
Found at i:24213986 original size:40 final size:40
Alignment explanation
Indices: 24213949--24214174 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
24213939 GCTACTCGTT
* *
24213949 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
24213989 CAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24214029 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
24214069 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
24214109 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
24214150 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24214175 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24224160 original size:47 final size:48
Alignment explanation
Indices: 24224009--24224274 Score: 160
Period size: 47 Copynumber: 5.6 Consensus size: 48
24223999 TGATTTGTGC
* * * *
24224009 GCCAGTGTAAGACATGTCTGGGACATGCTTCAG-C-C-ACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGA-GATA
* * * *
24224055 GCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATGGAGATGAG-T-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGACATGAGATA
** *
24224103 GCCAAAGTAAGACATGTTTGGGACATGCATCGGCCTCGACA-GAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGAGATA
* * * * * * * **
24224150 GCCAGTGTAAGACGTGTCTGGGACACGTATTGG-AT-AAGATTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGAGATA
* * * * *
24224194 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACG-CATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAT-GA-GATA
24224242 GCCAGTGTAAGATCATGTCTGGGACATCGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
24224275 TGTAATTTAT
Statistics
Matches: 165, Mismatches: 40, Indels: 26
0.71 0.17 0.11
Matches are distributed among these distances:
44 29 0.18
45 7 0.04
46 27 0.16
47 53 0.32
48 25 0.15
49 14 0.08
50 6 0.04
51 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGAGATA
Found at i:24226781 original size:26 final size:26
Alignment explanation
Indices: 24226752--24226859 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
24226742 TGGTACAAAT
*
24226752 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24226778 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24226804 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24226830 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24226856 TGAT
1 TGAT
24226860 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24228522 original size:27 final size:27
Alignment explanation
Indices: 24228482--24228622 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
24228472 AGGAAGCGTC
*
24228482 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
24228509 CTGGTGGCTCTGCC-CCATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
24228536 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
24228563 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
24228590 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
24228617 CTGGTG
1 CTGGTG
24228623 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:24228564 original size:54 final size:53
Alignment explanation
Indices: 24228482--24228622 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
24228472 AGGAAGCGTC
*
24228482 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCCCATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
24228536 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
24228590 CTGGTGGCTCTACCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
24228623 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:24229814 original size:44 final size:44
Alignment explanation
Indices: 24229683--24230193 Score: 393
Period size: 44 Copynumber: 11.6 Consensus size: 44
24229673 TACCACAGTG
* * * * * *
24229683 AATCTTATCTCCTTGAAATTGCAGTGGAGTAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * * *
24229727 AATCTAATCTCCCTAAAGTTACAGTAGG-GCAAATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCCACA
** * * *
24229771 AGGCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTGAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * ** * *
24229815 AGTCTTATTTCTTTGAAGTTGCAGTGGAAC-GAATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTGAAGCCACA
* * *
24229859 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * * *
24229903 CATCTTCTCTCCCAGAAGTTACAGTGGAGCAGATT-AATGCCACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GCCACA
* * *
24229947 AATCTAATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * * *
24229991 AATCTTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * ** *
24230035 AATCTAATCTCGCT-AAGGTTGAAGTGGAGCAGATTGAAGTTACG
1 AATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCCACA
* * * * ** *
24230079 AACCTTATCTCCCTGAAGTTACAATGTAGCAGATTGAAGGAACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * * * ***
24230123 AATTTTATATCCCTAAAGTTACAATGGAGCAGATTGAAATAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* *
24230167 AATCCTATAC-CTCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
24230194 GTTAGAATGA
Statistics
Matches: 368, Mismatches: 90, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
43 7 0.02
44 354 0.96
45 7 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
Found at i:24231701 original size:19 final size:18
Alignment explanation
Indices: 24231665--24231705 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
24231655 ATTTTTTATT
24231665 TTTTATTATTTTTCTACC
1 TTTTATTATTTTTCTACC
*
24231683 TTTTATTATTTTCTTTACC
1 TTTTATTATTTT-TCTACC
24231702 TTTT
1 TTTT
24231706 TAAATGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTATTTTTCTACC
Found at i:24233033 original size:32 final size:32
Alignment explanation
Indices: 24232997--24233061 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
24232987 TGTATGCATT
24232997 TTAGCATTTTAATAGTTAATAGATGATGGGCA
1 TTAGCATTTTAATAGTTAATAGATGATGGGCA
*
24233029 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATAGATGATGGGCA
24233061 T
1 T
24233062 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATAGATGATGGGCA
Found at i:24234575 original size:26 final size:26
Alignment explanation
Indices: 24234546--24234598 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24234536 TTTACAGTTT
24234546 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
24234572 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
24234598 T
1 T
24234599 GCATGTCTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:24237959 original size:39 final size:39
Alignment explanation
Indices: 24237916--24238001 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
24237906 CCGCAATTTT
24237916 CCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAGG
* *
24237955 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAGG
*
24237994 CTTGCTAG
1 CCTGCTAG
24238002 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (39 bp):
CCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAGG
Found at i:24246713 original size:56 final size:56
Alignment explanation
Indices: 24246620--24246728 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 56
24246610 TTACATGTAA
* * * *
24246620 TCACATATCGATGCCACTGTCCCAAACAGGGTTTTACTCGCACACATATATCGGAC
1 TCACATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCGGAC
* *
24246676 TCACATATCGATGCCAATGTATAAAACATGGTCTTACTCGCACACATATATCG
1 TCACATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCG
24246729 ATGTATTGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (56 bp):
TCACATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCGGAC
Found at i:24252712 original size:48 final size:46
Alignment explanation
Indices: 24252600--24252718 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 46
24252590 ATATGTGTGT
* *
24252600 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGC
* * *
24252646 CAGTGTAAGACATGTCTGGGATATGCATCGGCCTCAAGATAT-ACAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AAGC
* *
24252694 TAGTGTAAGACCTATCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
24252719 GCATTAGCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
46 32 0.52
47 2 0.03
48 27 0.44
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGC
Found at i:24252799 original size:49 final size:49
Alignment explanation
Indices: 24252601--24252910 Score: 173
Period size: 49 Copynumber: 6.5 Consensus size: 49
24252591 TATGTGTGTT
* * * *
24252601 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-C-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACATCGATAGATGAAAGCC
* * * * * *
24252647 AGTGTAAGACATGTCTGGGATAT-GCATCGGCCTC-A-AGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGAT-GA-AAGCC
* * * * * *
24252695 AGTGTAAGACCTATCTGGGACATGGCAT-TAGC-TTG-TTG-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CATCGATAGATGAAAGCC
* *
24252739 AGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCC
* *** * * * *
24252788 GGTGTAAGACCTGTCTGGGACACATCATCGACCTCGATATATAAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCC
* * * * * **
24252837 AGTGCAAGACCTTTCTGGGACATCGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCC
24252884 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
24252911 GTCATCATCT
Statistics
Matches: 198, Mismatches: 51, Indels: 28
0.71 0.18 0.10
Matches are distributed among these distances:
44 28 0.14
45 5 0.03
46 33 0.17
47 17 0.09
48 38 0.19
49 77 0.39
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCC
Found at i:24253330 original size:84 final size:84
Alignment explanation
Indices: 24253224--24253397 Score: 348
Period size: 84 Copynumber: 2.1 Consensus size: 84
24253214 AGAATGATTT
24253224 TGTGATGACCTTGTGGTTATAGGTCTATACTTATGATGTATAAACATGTATTTTTACCAATGTGA
1 TGTGATGACCTTGTGGTTATAGGTCTATACTTATGATGTATAAACATGTATTTTTACCAATGTGA
24253289 TGAAAATGAATTAATAAGG
66 TGAAAATGAATTAATAAGG
24253308 TGTGATGACCTTGTGGTTATAGGTCTATACTTATGATGTATAAACATGTATTTTTACCAATGTGA
1 TGTGATGACCTTGTGGTTATAGGTCTATACTTATGATGTATAAACATGTATTTTTACCAATGTGA
24253373 TGAAAATGAATTAATAAGG
66 TGAAAATGAATTAATAAGG
24253392 TGTGAT
1 TGTGAT
24253398 AAACTTAATA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (84 bp):
TGTGATGACCTTGTGGTTATAGGTCTATACTTATGATGTATAAACATGTATTTTTACCAATGTGA
TGAAAATGAATTAATAAGG
Found at i:24259158 original size:30 final size:30
Alignment explanation
Indices: 24259096--24259158 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
24259086 TTGATTTACG
**
24259096 AGTCTAAGGGCAAAATCGTAATTTTTGTAA
1 AGTCTAAGGGCAAAATCGTAATTTTTCCAA
* *
24259126 AGTCTAAGGGCAAAATGGTCATTTTTCCAA
1 AGTCTAAGGGCAAAATCGTAATTTTTCCAA
24259156 AGT
1 AGT
24259159 ATAAATTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (30 bp):
AGTCTAAGGGCAAAATCGTAATTTTTCCAA
Found at i:24259864 original size:49 final size:49
Alignment explanation
Indices: 24259803--24259984 Score: 183
Period size: 49 Copynumber: 3.7 Consensus size: 49
24259793 TGTTGTGTGT
*
24259803 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGATC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAATC
* * * * *
24259852 CAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATAAAAGT-
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAA-TC
* * ** *
24259901 CAGTGTAAGACCTGTTTGGGACATGGCATCGA-ATTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACA-TCGATAGATGAAATC
* * *
24259948 CAGTGTAAGACCATGTCTAGGACATGGCGTCGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
24259985 TTATCCCATG
Statistics
Matches: 107, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
47 14 0.13
48 17 0.16
49 75 0.70
50 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAATC
Found at i:24259921 original size:142 final size:139
Alignment explanation
Indices: 24259657--24259984 Score: 340
Period size: 142 Copynumber: 2.3 Consensus size: 139
24259647 ATTGGGTGAT
* * *
24259657 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-CATTATGAGAGCCAATGTAAG
1 ATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATC-GACATCATGATGAGAGCCAATGTAAG
* *
24259720 ACATGTATGGGACATGCATCGGCCACAAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGG
64 ACATGTATGGGACAGGCATCGGCCACAAGATATAAAAGCTAGTGTAAGACCTATCTGGGACATGG
* *
24259785 CGTC-AGCTTG
129 CATCGAACTTG
* * *
24259795 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGATCCAGTGTAA
1 ATGTGTG-CAGTGTAAGACCTGTCTGGGACATGGCATCGACATC-AT-GATGAGAGCCAATGTAA
* * * * * * *
24259860 GACCTGTCTGGGACACGGCATCGGCCTCGATATATAAAAG-TCAGTGTAAGACCTGTTTGGGACA
63 GACATGTATGGGACA-GGCATCGGCCACAAGATATAAAAGCT-AGTGTAAGACCTATCTGGGACA
*
24259924 TGGCATCGAATTTG
126 TGGCATCGAACTTG
* * *
24259938 ATGTGCTAGCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCATC
1 ATGTG-T-G-CAGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
24259985 TTATCCCATG
Statistics
Matches: 156, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
138 31 0.20
139 7 0.04
140 2 0.01
141 28 0.18
142 45 0.29
143 8 0.05
144 1 0.01
145 13 0.08
146 21 0.13
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (139 bp):
ATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCATGATGAGAGCCAATGTAAGAC
ATGTATGGGACAGGCATCGGCCACAAGATATAAAAGCTAGTGTAAGACCTATCTGGGACATGGCA
TCGAACTTG
Found at i:24262826 original size:19 final size:19
Alignment explanation
Indices: 24262802--24262845 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
24262792 TATGAGAGAA
24262802 TTTTGTTCTTGAGTTAGGG
1 TTTTGTTCTTGAGTTAGGG
* * *
24262821 TTTTGTTTTTGGGTTTGGG
1 TTTTGTTCTTGAGTTAGGG
24262840 TTTTGT
1 TTTTGT
24262846 ACGTTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.02, G:0.32, T:0.61
Consensus pattern (19 bp):
TTTTGTTCTTGAGTTAGGG
Found at i:24263865 original size:28 final size:29
Alignment explanation
Indices: 24263809--24263874 Score: 93
Period size: 28 Copynumber: 2.3 Consensus size: 29
24263799 ATTTTGATTA
*
24263809 TTTA-CGAAAAGTATTCGGTGTAATTTTT
1 TTTATCGAAAAGTATCCGGTGTAATTTTT
24263837 TTTATCGAAAAGTATCCAGGTGT-A-TTTT
1 TTTATCGAAAAGTATCC-GGTGTAATTTTT
24263865 TTTATCGAAA
1 TTTATCGAAA
24263875 TAACTTGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
28 18 0.51
29 12 0.34
30 5 0.14
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (29 bp):
TTTATCGAAAAGTATCCGGTGTAATTTTT
Found at i:24266475 original size:14 final size:14
Alignment explanation
Indices: 24266458--24266496 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
24266448 TCCTAAAAAT
24266458 AAATAATCTTTTAA
1 AAATAATCTTTTAA
*
24266472 AAATAATTATTTTAA
1 AAATAA-TCTTTTAA
24266487 AAATACATCT
1 AAATA-ATCT
24266497 AGTATGAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 6 0.29
15 14 0.67
16 1 0.05
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATAATCTTTTAA
Found at i:24266604 original size:10 final size:9
Alignment explanation
Indices: 24266584--24266652 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 9
24266574 TTCTTTAGAT
24266584 AATTACTAAA
1 AATTA-TAAA
24266594 AATTATAAA
1 AATTATAAA
*
24266603 AATTATGGAA
1 AATTAT-AAA
*
24266613 AATTACTAAT
1 AATTA-TAAA
*
24266623 AATTATGAGA
1 AATTAT-AAA
*
24266633 AGTTATAAA
1 AATTATAAA
24266642 AATTAATAAA
1 AATT-ATAAA
24266652 A
1 A
24266653 TGTTTAGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
9 16 0.34
10 30 0.64
11 1 0.02
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (9 bp):
AATTATAAA
Found at i:24266626 original size:20 final size:19
Alignment explanation
Indices: 24266592--24266646 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
24266582 ATAATTACTA
24266592 AAAATTATAAAAATTATGG
1 AAAATTATAAAAATTATGG
*
24266611 AAAATTACTAATAATTAT-G
1 AAAATTA-TAAAAATTATGG
*
24266630 AGAAGTTATAAAAATTA
1 A-AAATTATAAAAATTA
24266647 ATAAAATGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (19 bp):
AAAATTATAAAAATTATGG
Found at i:24266643 original size:29 final size:29
Alignment explanation
Indices: 24266584--24266652 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
24266574 TTCTTTAGAT
*
24266584 AATTACTAAAAATTATAAAAATTATGGAA
1 AATTACTAAAAATTATAAAAATTATGAAA
* * *
24266613 AATTACTAATAATTATGAGAAGTTAT-AAA
1 AATTACTAAAAATTAT-AAAAATTATGAAA
*
24266642 AATTAATAAAA
1 AATTACTAAAA
24266653 TGTTTAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 26 0.79
30 7 0.21
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (29 bp):
AATTACTAAAAATTATAAAAATTATGAAA
Found at i:24266835 original size:14 final size:14
Alignment explanation
Indices: 24266816--24266843 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24266806 TTAATTATTT
24266816 TAATTATTTTAAAA
1 TAATTATTTTAAAA
24266830 TAATTATTTTAAAA
1 TAATTATTTTAAAA
24266844 CTTATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTATTTTAAAA
Found at i:24268011 original size:19 final size:19
Alignment explanation
Indices: 24267979--24268017 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
24267969 ATAAATTTTT
24267979 TTTAAAAATAATATATAAAA
1 TTTAAAAATAATAT-TAAAA
24267999 TTTAAAAAT-ATATTAAAA
1 TTTAAAAATAATATTAAAA
24268017 T
1 T
24268018 AATTATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTTAAAAATAATATTAAAA
Found at i:24268070 original size:7 final size:7
Alignment explanation
Indices: 24268048--24268082 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
24268038 AATATTAATA
24268048 TAAATTT
1 TAAATTT
*
24268055 TAGATTTT
1 TA-AATTT
24268063 TAAATTT
1 TAAATTT
24268070 TAAATTT
1 TAAATTT
24268077 TAAATT
1 TAAATT
24268083 ATATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (7 bp):
TAAATTT
Found at i:24270125 original size:24 final size:24
Alignment explanation
Indices: 24270088--24270163 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
24270078 ATTTTATAAT
* * *
24270088 AAATTTAGCCTTTAATATTTTATAT
1 AAATTTAACTTTTAATATTTTA-AC
* * *
24270113 GATTTTAA-TTTTAAAATTTTAAC
1 AAATTTAACTTTTAATATTTTAAC
24270136 AAATTTAACTTTTAATA-TTT-AC
1 AAATTTAACTTTTAATATTTTAAC
24270158 AAATTT
1 AAATTT
24270164 TAATAATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
22 8 0.20
23 10 0.24
24 18 0.44
25 5 0.12
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (24 bp):
AAATTTAACTTTTAATATTTTAAC
Found at i:24270162 original size:22 final size:23
Alignment explanation
Indices: 24270116--24270163 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
24270106 TTTATATGAT
24270116 TTTAATTTTAAAATTTTAACAAA
1 TTTAATTTTAAAATTTTAACAAA
*
24270139 TTTAACTTTTAATA-TTT-ACAAA
1 TTTAA-TTTTAAAATTTTAACAAA
24270161 TTT
1 TTT
24270164 TAATAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 7 0.30
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAATTTTAAAATTTTAACAAA
Found at i:24270165 original size:23 final size:24
Alignment explanation
Indices: 24270114--24270167 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
24270104 ATTTTATATG
24270114 ATTTTAATTTTAAAATTTTAACAA
1 ATTTTAATTTTAAAATTTTAACAA
*
24270138 A-TTTAACTTTTAATA-TTT-ACAA
1 ATTTTAA-TTTTAAAATTTTAACAA
24270160 ATTTTAAT
1 ATTTTAAT
24270168 AATTTGATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 6 0.22
23 13 0.48
24 8 0.30
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTTTAATTTTAAAATTTTAACAA
Found at i:24271547 original size:49 final size:48
Alignment explanation
Indices: 24271493--24271718 Score: 153
Period size: 49 Copynumber: 4.8 Consensus size: 48
24271483 ACATCAAAGT
*
24271493 TGATGCCATGTCCCAAACAGGTCTTACACTAACTTTCATACATCGAGGC
1 TGATGCCATGTCCCAAACAGGTCTTACACTAACTCTCATACAT-GAGGC
* * * * ** * *
24271542 TGATGCCGTGTCCCAAACAAGTATTACAATGGCTCTCAT-CTATTAGTGT
1 TGATGCCATGTCCCAAACAGGTCTTACACTAACTCTCATAC-ATGAG-GC
* * * * *
24271591 TGATACCTTGTCCCAAATAGGTCTTACACTGACACTCA-ACA--A-GC
1 TGATGCCATGTCCCAAACAGGTCTTACACTAACTCTCATACATGAGGC
* * *
24271635 TGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATC-TCGAGGC
1 TGATGCCATGTCCCAAACAGGTCTTACACTAACTCT-CATA-CAT-GAGGC
** * *
24271684 TGATG-CATGTCCCTGACATGTCTTACACTAGCTCT
1 TGATGCCATGTCCCAAACAGGTCTTACACTAACTCT
24271719 AGTCTCAATG
Statistics
Matches: 138, Mismatches: 28, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.21
45 1 0.01
46 2 0.01
48 31 0.22
49 74 0.54
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
TGATGCCATGTCCCAAACAGGTCTTACACTAACTCTCATACATGAGGC
Found at i:24271748 original size:46 final size:48
Alignment explanation
Indices: 24271633--24271760 Score: 163
Period size: 46 Copynumber: 2.7 Consensus size: 48
24271623 CACTCAACAA
* * *
24271633 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCAAG
* * *
24271682 GCTGATGCATGTCCCTGACATGTCTTACACTAGC-TCTA-GTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCAAG
24271728 G-TCGATGCATGTCCCAGACATGTCTTACACTAG
1 GCT-GATGCATGTCCCAGACATGTCTTACACTAG
24271761 AACACATATC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 1 0.01
46 35 0.49
47 3 0.04
48 25 0.35
49 7 0.10
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCAAG
Found at i:24275181 original size:53 final size:54
Alignment explanation
Indices: 24275113--24275415 Score: 353
Period size: 55 Copynumber: 5.6 Consensus size: 54
24275103 CTTACCATTC
* *
24275113 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATA
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATG
* * * * *
24275166 CCATGCCTTGGCATGGTCTTACATGTTA-CCGTTTCCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCACCAATG
*
24275221 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATG
* * * * *
24275274 CCATGCATTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCACCAATG
* * * * *
24275329 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATG
* * *
24275383 CCATGCCTTGGCATGGTCTTACACGATATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTT
24275416 ATCTTACCAA
Statistics
Matches: 211, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.02
53 75 0.36
54 43 0.20
55 85 0.40
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATG
Found at i:24275290 original size:108 final size:108
Alignment explanation
Indices: 24275113--24275405 Score: 487
Period size: 108 Copynumber: 2.7 Consensus size: 108
24275103 CTTACCATTC
*
24275113 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATACCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
** *
24275178 ATGGTCTTACATGTTACCGTTTCCTTATAGTAACTTATCAATG
66 ATGGTCTTACATGGGACCGTTTCCTTATAGTAACTCATCAATG
*
24275221 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCATTGGC
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
*
24275286 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATG
66 ATGGTCTTACATGGGACCGTTTCCTTATAGTAACTCATCAATG
* * * *
24275329 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
24275394 CATGGTCTTACA
65 CATGGTCTTACA
24275406 CGATATCCTT
Statistics
Matches: 173, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
108 140 0.81
109 33 0.19
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (108 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGGGACCGTTTCCTTATAGTAACTCATCAATG
Found at i:24275674 original size:44 final size:44
Alignment explanation
Indices: 24275605--24275691 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
24275595 GTATCCTTAA
* *
24275605 CCATCAATTCCTCCTTAAATTCCATGTTATGAA-CATGGACTTTT
1 CCATCAATTCCTCCTTAAATTCCATGGTA-CAACCATGGACTTTT
*
24275649 CCATCAATTCTTCCTT-AATTGCCATGGTACAACCATGGACTTT
1 CCATCAATTCCTCCTTAAATT-CCATGGTACAACCATGGACTTT
24275692 GAGATATCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 6 0.16
44 32 0.84
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.37
Consensus pattern (44 bp):
CCATCAATTCCTCCTTAAATTCCATGGTACAACCATGGACTTTT
Found at i:24276260 original size:31 final size:30
Alignment explanation
Indices: 24276225--24276282 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
24276215 CTAACTCAAA
24276225 CTTTGGAAAAAATACAATTTTGCCCCTAAAC
1 CTTT-GAAAAAATACAATTTTGCCCCTAAAC
* * * *
24276256 CTTTGTAGAATTACGATTTTGCCCCTA
1 CTTTGAAAAAATACAATTTTGCCCCTA
24276283 GGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGAAAAAATACAATTTTGCCCCTAAAC
Found at i:24279404 original size:24 final size:22
Alignment explanation
Indices: 24279376--24279420 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
24279366 TTTATCAAGA
24279376 TAAATATTAGATTAAATATAATAT
1 TAAATATT-GATTAAA-ATAATAT
* *
24279400 TAAATCTTTATTAAAATAATA
1 TAAATATTGATTAAAATAATA
24279421 GAATGTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 6 0.32
24 7 0.37
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
TAAATATTGATTAAAATAATAT
Found at i:24279538 original size:37 final size:36
Alignment explanation
Indices: 24279435--24279551 Score: 107
Period size: 37 Copynumber: 3.2 Consensus size: 36
24279425 GTTAATCTAC
* * *
24279435 AATATAAACATTAAATTAA-ATTAAA-TATTAATAT
1 AATATTAATATTAAATTAATATTAAACTATTAAAAT
* *
24279469 AATCACTTTAATATTAAATTAATA-AAATACTATTAAGAT
1 AAT-A--TTAATATTAAATTAATATTAA-ACTATTAAAAT
24279508 AAGTATTAA-ATTAAATTTAATATTAAACTATTAAAAT
1 AA-TATTAATATTAAA-TTAATATTAAACTATTAAAAT
24279545 AATATTA
1 AATATTA
24279552 TTTTTGGAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
34 3 0.04
35 1 0.01
36 11 0.16
37 37 0.54
38 4 0.06
39 11 0.16
40 1 0.01
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (36 bp):
AATATTAATATTAAATTAATATTAAACTATTAAAAT
Found at i:24288811 original size:39 final size:39
Alignment explanation
Indices: 24288757--24288834 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
24288747 ACTACAAAGA
24288757 TTTAACCCATTAGATGCTAAAGGACCATCCTGCCTAGTC
1 TTTAACCCATTAGATGCTAAAGGACCATCCTGCCTAGTC
24288796 TTTAACCCATTAGATGCTAAAGGACCATCCTGCCTAGTC
1 TTTAACCCATTAGATGCTAAAGGACCATCCTGCCTAGTC
24288835 CTTTCCTTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (39 bp):
TTTAACCCATTAGATGCTAAAGGACCATCCTGCCTAGTC
Found at i:24290197 original size:43 final size:44
Alignment explanation
Indices: 24290131--24290257 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 44
24290121 TTTTCTCAAA
* * *
24290131 TCACCAGCATT-TTGCCTGTTAGGCTC-AAGGCCCGATATCAG-T-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA-AT-AGATC
*
24290173 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAG-ATC
* ** *
24290218 TCATCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
24290258 ATCAAGTCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 12 0.17
43 15 0.21
44 10 0.14
45 35 0.49
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGATC
Found at i:24290658 original size:43 final size:42
Alignment explanation
Indices: 24290587--24290826 Score: 329
Period size: 43 Copynumber: 5.6 Consensus size: 42
24290577 CTGGCATTAC
*
24290587 GCCTGCTAGGCACGAAGGGCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAA-GGCCCAATACACATCACCGGCACGAA
*
24290630 GCCTGCTAGGCACGAAGGCCCAATTACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCAA-TACACATCACCGGCACGAA
* *
24290673 GCCTACTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCC-AATACACATCACCGGCACGAA
* * * *
24290716 GCCTACAAGGCACGAAGGCCCAAATACACATCACTGGCACTAA
1 GCCTGCTAGGCACGAAGGCCC-AATACACATCACCGGCACGAA
* *
24290759 GCCTGCTAGGCACGAAGGTCGAATACACATCACCGGCACTG-A
1 GCCTGCTAGGCACGAAGGCCCAATACACATCACCGGCAC-GAA
24290801 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCC-AATA
24290827 TAATACCAGC
Statistics
Matches: 177, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
42 43 0.24
43 132 0.75
44 2 0.01
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCCAATACACATCACCGGCACGAA
Found at i:24290861 original size:38 final size:38
Alignment explanation
Indices: 24290819--24290902 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
24290809 GGCACGAAGG
* * * * *
24290819 CCCGAATATAATACCAGCACTAGGCCTATGGGATTTAT
1 CCCGAATATAATACCAACACGAAGCCTACGGGATTTAA
*
24290857 CCCGAATATAATACCAACACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAACACGAAGCCTACGGGATTTAA
24290895 CCCGAATA
1 CCCGAATA
24290903 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAACACGAAGCCTACGGGATTTAA
Found at i:24294765 original size:23 final size:22
Alignment explanation
Indices: 24294739--24294785 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24294729 TATTTTGGAC
* *
24294739 TTAAATTATTAATATAATGAATT
1 TTAAATAATT-ATATAATAAATT
*
24294762 TTAAATAATTTTATAATAAATT
1 TTAAATAATTATATAATAAATT
24294784 TT
1 TT
24294786 GATTAATCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAATAATTATATAATAAATT
Found at i:24302561 original size:19 final size:19
Alignment explanation
Indices: 24302551--24302588 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24302541 TCCAAGTGTT
*
24302551 GTAAAAGTTTCATAAGTTC
1 GTAAAAGTTTCACAAGTTC
*
24302570 GTAAAAGTTTCATAAGTTC
1 GTAAAAGTTTCACAAGTTC
24302589 TCAGTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GTAAAAGTTTCACAAGTTC
Found at i:24305024 original size:40 final size:40
Alignment explanation
Indices: 24304820--24305024 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
24304810 CGGAATTTAA
** *
24304820 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
24304860 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
24304900 CCGGATTTAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
24304940 CCAGATTTATTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
24304980 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
24305020 CCGGA
1 CCGGA
24305025 CATCATTCAA
Statistics
Matches: 141, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 126 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:24332473 original size:40 final size:40
Alignment explanation
Indices: 24332416--24332835 Score: 646
Period size: 40 Copynumber: 10.6 Consensus size: 40
24332406 AGTGGTATAC
*
24332416 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
24332456 CCGGGCTAAGCCTCGAAGAGCATTCATGCTAGTGATGTAC
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
24332496 CCGGGCTAAGCCCCAAAGAGCATTCGTGCTAGTGATGTA-
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
24332535 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTA-TGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
24332574 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
24332614 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
24332654 CCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
24332694 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
24332734 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * * *
24332774 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* ** *
24332814 TCGGGCTGGGTCCCGAAGAGCA
1 CCGGGCTAAGCCCCGAAGAGCA
24332836 ATCATGCTGG
Statistics
Matches: 349, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
38 7 0.02
39 59 0.17
40 283 0.81
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:24336969 original size:47 final size:47
Alignment explanation
Indices: 24336918--24337140 Score: 401
Period size: 47 Copynumber: 4.7 Consensus size: 47
24336908 GATGTGAATG
*
24336918 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
24336965 TGCATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAGCA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
24337012 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
24337059 TGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* *
24337106 TGCATATGTGTGATAAGGCCGAATGACCAATGTGA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGA
24337141 AATATATGTA
Statistics
Matches: 169, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 169 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
Found at i:24337395 original size:37 final size:37
Alignment explanation
Indices: 24337345--24337457 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
24337335 GGAAATATAT
*
24337345 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24337382 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
24337419 TCCGGGTAAGATCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24337456 TC
1 TC
24337458 TGAGCTAAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:24344596 original size:40 final size:39
Alignment explanation
Indices: 24344539--24344687 Score: 201
Period size: 40 Copynumber: 3.7 Consensus size: 39
24344529 GATGATAACT
* * *
24344539 GGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTAATTCC
*
24344579 GGGCTAAGTCCCAAAGGCATTGTTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTG-TGCGAGTTACTAATTCC
*
24344619 GGGCTAAGTCCCGAAGGCATTGTCCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAT-TCC
*
24344658 GGGCTAAGTCCCGAAGGCATTCGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATT-GTGCGAGT
24344688 GGCTATATCC
Statistics
Matches: 98, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.02
39 37 0.38
40 59 0.60
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAATTCC
Found at i:24344686 original size:79 final size:80
Alignment explanation
Indices: 24344539--24344687 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 80
24344529 GATGATAACT
* * * *
24344539 GGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTTG
1 GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTAG
24344604 CGAGTTACTAATTCC
66 CGAGTTACTAATTCC
* *
24344619 GGGCTAAGTCCCGAAGGC-ATTGTCCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTCG-
1 GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAAT-TCCGGGCTAAGTCCCAAAGGCATT-GT
24344681 AGCGAGT
64 AGCGAGT
24344688 GGCTATATCC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 2 0.03
79 40 0.66
80 19 0.31
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTAG
CGAGTTACTAATTCC
Found at i:24344698 original size:40 final size:39
Alignment explanation
Indices: 24344539--24344713 Score: 194
Period size: 40 Copynumber: 4.4 Consensus size: 39
24344529 GATGATAACT
* *
24344539 GGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGC-ATTGTGCGAGTGACTAATTCC
* *
24344579 GGGCTAAGTCCCAAAGGCATTGTTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTG-TGCGAGTGACTAATTCC
* *
24344619 GGGCTAAGTCCCGAAGGCATTGTCCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAT-TCC
* *
24344658 GGGCTAAGTCCCGAAGGCATTCGAGCGAGTGGCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATT-GTGCGAGTGACTAAT-TCC
* *
24344698 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
24344714 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.02
39 51 0.43
40 67 0.56
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAATTCC
Found at i:24344699 original size:79 final size:80
Alignment explanation
Indices: 24344539--24344713 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
24344529 GATGATAACT
* * * *
24344539 GGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTTG
1 GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTAG
*
24344604 CGAGTTACTAATTCC
66 CGAGTGACTAATTCC
* *
24344619 GGGCTAAGTCCCGAAGGC-ATTGTCCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTCG-
1 GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAAT-TCCGGGCTAAGTCCCAAAGGCATT-GT
*
24344681 AGCGAGTGGCT-ATATCC
64 AGCGAGTGACTAAT-TCC
* *
24344698 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
24344714 TACTTGGTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 18 0.22
79 45 0.55
80 19 0.23
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCGATTGTCCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTGTAG
CGAGTGACTAATTCC
Found at i:24350282 original size:65 final size:65
Alignment explanation
Indices: 24350175--24350305 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
24350165 AGTCCCATGC
* *
24350175 ATCAGATAATAATAACATGGCATGCAGTAAATAGTGATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
24350240 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
24350305 A
1 A
24350306 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:24350364 original size:27 final size:26
Alignment explanation
Indices: 24350308--24350364 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
24350298 CAACCTTAAC
* * *
24350308 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
24350334 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
24350361 CCTA
1 CCTA
24350365 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:24351663 original size:42 final size:42
Alignment explanation
Indices: 24351616--24351701 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
24351606 AAAAAGGAAG
*
24351616 AAAGAAAATGAAGGAAAATGAGAGGAAGAAGAAATCGGCACC
1 AAAGAAAATGAAGGAAAAAGAGAGGAAGAAGAAATCGGCACC
*
24351658 AAAGAAAATGAAGTAAAAAGAGAGGAAGAAGAAATCGGCACC
1 AAAGAAAATGAAGGAAAAAGAGAGGAAGAAGAAATCGGCACC
24351700 AA
1 AA
24351702 GGAGAAGGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.57, C:0.09, G:0.27, T:0.07
Consensus pattern (42 bp):
AAAGAAAATGAAGGAAAAAGAGAGGAAGAAGAAATCGGCACC
Found at i:24352328 original size:19 final size:18
Alignment explanation
Indices: 24352291--24352334 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
24352281 ATACATACAG
24352291 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
24352308 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
24352327 TACTAATT
1 TAATAATT
24352335 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:24355152 original size:58 final size:58
Alignment explanation
Indices: 24355087--24355203 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
24355077 TTTAGACTTT
24355087 TATCAAATCACCGGCATTCAGCCTGCTAGATTTAAAAACCCGAATTCATTCACCGGCA
1 TATCAAATCACCGGCATTCAGCCTGCTAGATTTAAAAACCCGAATTCATTCACCGGCA
*
24355145 TATCAAATCACCGGCATTCAGCCTGCTAGATTTAAAAACCCGAATTCATTCACTGGCA
1 TATCAAATCACCGGCATTCAGCCTGCTAGATTTAAAAACCCGAATTCATTCACCGGCA
24355203 T
1 T
24355204 TTCGCCTGCT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (58 bp):
TATCAAATCACCGGCATTCAGCCTGCTAGATTTAAAAACCCGAATTCATTCACCGGCA
Found at i:24355192 original size:28 final size:28
Alignment explanation
Indices: 24355102--24355192 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 28
24355092 AATCACCGGC
24355102 ATTCAGCCTGCTAGATTTAAAAACCCGA
1 ATTCAGCCTGCTAGATTTAAAAACCCGA
* * * * * * *
24355130 ATTCATTCACCGGC-ATA-TCAAATCACCGGC
1 ATTCA---GCCTGCTAGATTTAAA-AACCCGA
24355160 ATTCAGCCTGCTAGATTTAAAAACCCGA
1 ATTCAGCCTGCTAGATTTAAAAACCCGA
24355188 ATTCA
1 ATTCA
24355193 TTCACTGGCA
Statistics
Matches: 43, Mismatches: 14, Indels: 12
0.62 0.20 0.17
Matches are distributed among these distances:
27 4 0.09
28 16 0.37
29 8 0.19
30 11 0.26
31 4 0.09
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (28 bp):
ATTCAGCCTGCTAGATTTAAAAACCCGA
Found at i:24355205 original size:28 final size:28
Alignment explanation
Indices: 24355116--24355205 Score: 65
Period size: 28 Copynumber: 3.1 Consensus size: 28
24355106 AGCCTGCTAG
*
24355116 ATTTAAAAACCCGAATTCATTCACCGGC
1 ATTTAAAAACCCGAATTCATTCACTGGC
* * * * ** * *
24355144 ATATCAAATCACCGGCATTCAGCCTGCTAG-
1 AT-TTAAA-AACCCGAATTCATTC-ACTGGC
24355174 ATTTAAAAACCCGAATTCATTCACTGGC
1 ATTTAAAAACCCGAATTCATTCACTGGC
24355202 ATTT
1 ATTT
24355206 CGCCTGCTAG
Statistics
Matches: 41, Mismatches: 17, Indels: 8
0.62 0.26 0.12
Matches are distributed among these distances:
27 3 0.07
28 16 0.39
29 8 0.20
30 12 0.29
31 2 0.05
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
ATTTAAAAACCCGAATTCATTCACTGGC
Found at i:24355414 original size:45 final size:44
Alignment explanation
Indices: 24355152--24355410 Score: 362
Period size: 44 Copynumber: 5.9 Consensus size: 44
24355142 GCATATCAAA
** * ** *
24355152 TCACCGGCA-TTCAGCCTGCTAGATTTAAAAACCCGAAT-TCAT-
1 TCACCGGCATTTC-GCCTGCTAGGCTCAAAGGCCCGAATATTATC
* *
24355194 TCACTGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTCTC
1 TCACCGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
*
24355238 TCACTGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
24355282 TCACCGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
* *
24355326 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATT-TCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
*
24355371 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATT-TCGCCTGCTAGGCTCAAAGGCCCGAATA
24355411 GTATTGTACA
Statistics
Matches: 201, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 28 0.14
43 5 0.02
44 97 0.48
45 71 0.35
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTTCGCCTGCTAGGCTCAAAGGCCCGAATATTATC
Found at i:24360157 original size:53 final size:54
Alignment explanation
Indices: 24360082--24360267 Score: 198
Period size: 55 Copynumber: 3.4 Consensus size: 54
24360072 TTTTGAACTT
* * *
24360082 ACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAAATC
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATC
* *
24360135 ACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTATAG-AAATC
* * * * * * *
24360190 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAAAAATT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATC
* *
24360244 ATCAATGCCATGCCTTGGCATGGT
1 ACCAATGCCATGCCTTGACATGGT
24360268 TTTTGTAACA
Statistics
Matches: 111, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 37 0.33
54 29 0.26
55 41 0.37
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATC
Found at i:24361672 original size:47 final size:45
Alignment explanation
Indices: 24361514--24361774 Score: 208
Period size: 47 Copynumber: 5.6 Consensus size: 45
24361504 TTGCTAATGC
* * * * *
24361514 CATGTCCCTGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGG--CT-ATCTCTGTGAGCCGATG
* * * *
24361563 CATGCCCCAGACATGTCTTACACTAGCACAACTCT-T-AGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTGAGCCGATG
* * *
24361607 CGTGTCCCAGACACGTCTTACACAGGCTATCTCTGTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCTCTG-TGA-GCCGATG
* *
24361654 CATGTCCCATACATGTCTTACTCTGGCACTCATCTCTGT--GCCGATG
1 CATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTGAGCCGATG
* * *
24361700 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGA-CCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTGAGCCGATG
24361748 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
24361775 GCACAAATCA
Statistics
Matches: 172, Mismatches: 26, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.03
44 28 0.16
45 4 0.02
46 28 0.16
47 58 0.34
48 27 0.16
49 15 0.09
50 7 0.04
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCTCTGTGAGCCGATG
Found at i:24361751 original size:94 final size:92
Alignment explanation
Indices: 24361510--24361774 Score: 297
Period size: 94 Copynumber: 2.8 Consensus size: 92
24361500 TATATTGCTA
* * * *
24361510 ATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGCCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-ACCGATGCATGTCCCAGAC
*
24361575 ATGTCTTACACTAGCACAACTCTTAGCCG
64 ATGTCTTACACTGGCACAACTCTTAGCCG
* * * * * *
24361604 ATG-CGTGTCCCAGACA-CGTCTTACACAGGCTATC-T-CTGTTGAGGCCGATGCATGTCCCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG-TGA--CCGATGCATGTCCCAGA
* *
24361665 CATGTCTTACTCTGGCACTCATCTCTGT-GCCG
63 CATGTCTTACACTGGCA--CAACTCT-TAGCCG
*
24361697 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGAAGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCCCAGACAT
24361762 GTCTTACACTGGC
66 GTCTTACACTGGC
24361775 GCACAAATCA
Statistics
Matches: 140, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 30 0.21
92 15 0.11
93 24 0.17
94 46 0.33
95 15 0.11
96 4 0.03
97 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCCCAGACAT
GTCTTACACTGGCACAACTCTTAGCCG
Found at i:24363067 original size:47 final size:47
Alignment explanation
Indices: 24362997--24363116 Score: 168
Period size: 47 Copynumber: 2.6 Consensus size: 47
24362987 GGTTGTTACA
* *
24362997 GTCTTACATGATATCCTTATCTTAGTAAATGCCATGTTCCAAACATG
1 GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
* ** * **
24363044 GTCTTACTTGGTATCCTTGTCTTACCAAATGTCATGTTCTGAACATG
1 GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
24363091 GTCTTACATGGTATCCTTGTCTTAGT
1 GTCTTACATGGTATCCTTGTCTTAGT
24363117 TCCAATGCCA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (47 bp):
GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
Found at i:24366328 original size:34 final size:34
Alignment explanation
Indices: 24366280--24366357 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
24366270 CTGTTGCATT
*
24366280 ATTGATACTATTACTA-TAATGGGCTAAGGCCCAC
1 ATTGATACTGTTACTACT-ATGGGCTAAGGCCCAC
24366314 ATTGATACTGTTACTACTATGGGCTAAGGCCCAC
1 ATTGATACTGTTACTACTATGGGCTAAGGCCCAC
* *
24366348 ACTAATACTG
1 ATTGATACTG
24366358 GACTGCCACT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (34 bp):
ATTGATACTGTTACTACTATGGGCTAAGGCCCAC
Found at i:24371505 original size:28 final size:28
Alignment explanation
Indices: 24371474--24371532 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
24371464 ATGTAGACAC
24371474 ATAGATACAAATTCATACATTTAGATTT
1 ATAGATACAAATTCATACATTTAGATTT
* * * *
24371502 ATAGATGCAGATTTATAGATTTAGATTT
1 ATAGATACAAATTCATACATTTAGATTT
24371530 ATA
1 ATA
24371533 AATGTGGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.41
Consensus pattern (28 bp):
ATAGATACAAATTCATACATTTAGATTT
Found at i:24371515 original size:14 final size:14
Alignment explanation
Indices: 24371496--24371633 Score: 98
Period size: 14 Copynumber: 9.9 Consensus size: 14
24371486 TCATACATTT
24371496 AGATTTATAGATGC
1 AGATTTATAGATGC
**
24371510 AGATTTATAGATTT
1 AGATTTATAGATGC
* *
24371524 AGATTTATAAATGT
1 AGATTTATAGATGC
*
24371538 GGATTTATAGATGC
1 AGATTTATAGATGC
* *
24371552 -GAATTAATAGATAC
1 AG-ATTTATAGATGC
*
24371566 AGATTCATAGATGC
1 AGATTTATAGATGC
* * *
24371580 AAATTTACAAATGC
1 AGATTTATAGATGC
* * *
24371594 AGATTCATACATGT
1 AGATTTATAGATGC
* **
24371608 GGATTCGTAGATGC
1 AGATTTATAGATGC
*
24371622 AGATTCATAGAT
1 AGATTTATAGAT
24371634 ATCCCGTAAA
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
13 1 0.01
14 94 0.98
15 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.35
Consensus pattern (14 bp):
AGATTTATAGATGC
Found at i:24371570 original size:42 final size:42
Alignment explanation
Indices: 24371474--24371598 Score: 117
Period size: 42 Copynumber: 3.0 Consensus size: 42
24371464 ATGTAGACAC
* * * *
24371474 ATAGATACAAATTCATACATTTAGATTTATAGATGCAGATTT
1 ATAGATACAGATTCATAAATGTAGATTTATAGATGCAGATTA
** * *
24371516 ATAGATTTAGATTTATAAATGTGGATTTATAGATGC-GAATTA
1 ATAGATACAGATTCATAAATGTAGATTTATAGATGCAG-ATTA
* * * * *
24371558 ATAGATACAGATTCATAGATGCAAATTTACAAATGCAGATT
1 ATAGATACAGATTCATAAATGTAGATTTATAGATGCAGATT
24371599 CATACATGTG
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (42 bp):
ATAGATACAGATTCATAAATGTAGATTTATAGATGCAGATTA
Found at i:24371592 original size:56 final size:56
Alignment explanation
Indices: 24371502--24371633 Score: 138
Period size: 56 Copynumber: 2.4 Consensus size: 56
24371492 ATTTAGATTT
* ** * * ** * *
24371502 ATAGATGCAGATTTATAGATTTAGATTTATAAATGTGGATTTATAGATGCGAATTA
1 ATAGATGCAGATTCATAGATGCAAATTTACAAATGCAGATTCATACATGCGAATTA
* * * *
24371558 ATAGATACAGATTCATAGATGCAAATTTACAAATGCAGATTCATACATGTGGATTC
1 ATAGATGCAGATTCATAGATGCAAATTTACAAATGCAGATTCATACATGCGAATTA
*
24371614 GTAGATGCAGATTCATAGAT
1 ATAGATGCAGATTCATAGAT
24371634 ATCCCGTAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (56 bp):
ATAGATGCAGATTCATAGATGCAAATTTACAAATGCAGATTCATACATGCGAATTA
Found at i:24373061 original size:31 final size:31
Alignment explanation
Indices: 24373020--24373081 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
24373010 AAATATGGAT
* * *
24373020 ATTAATCATAGAGAAAGGGAGAGTTTTTTTC
1 ATTAAGCATAGAGAAAAGGAGAATTTTTTTC
24373051 ATTAAGCATAGAGAAAAGGAGAATTTTTTTC
1 ATTAAGCATAGAGAAAAGGAGAATTTTTTTC
24373082 TTTCTTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.34
Consensus pattern (31 bp):
ATTAAGCATAGAGAAAAGGAGAATTTTTTTC
Found at i:24373929 original size:27 final size:27
Alignment explanation
Indices: 24373896--24373951 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
24373886 TCATGAAAAG
*
24373896 AAGCCTTTGTGGCGAATCACAAAAGAA
1 AAGCCTTTCTGGCGAATCACAAAAGAA
**
24373923 AAGCCTTTCTGGCGAATCATGAAAGAA
1 AAGCCTTTCTGGCGAATCACAAAAGAA
24373950 AA
1 AA
24373952 ACTTTTACGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (27 bp):
AAGCCTTTCTGGCGAATCACAAAAGAA
Found at i:24375234 original size:28 final size:28
Alignment explanation
Indices: 24375183--24375236 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
24375173 CAGTATCAGT
* * *
24375183 ACAGTCTGGGCCTTAGCTCTATACAGCA
1 ACAGTCTGGGCCTAAGCCCAATACAGCA
*
24375211 ACAGTGTGGGCCTAAGCCCAATACAG
1 ACAGTCTGGGCCTAAGCCCAATACAG
24375237 TATTAGTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAATACAGCA
Found at i:24381623 original size:40 final size:40
Alignment explanation
Indices: 24381579--24381746 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
24381569 AGGCCAAGTC
* **
24381579 CCGAAGGCTTTTATGCTAGTGACTATATCCGAACTAAGAT
1 CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAT
* *
24381619 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGA-
1 CCGAAGGCATTTATGCTAG-TGACTATATCCGGGCTAAGAT
* **
24381658 CTCGAAGGCATTTGTGCTAACGACTATATCCGGGCTAAG-T
1 C-CGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAT
* *
24381698 CCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGAC
1 -CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAT
24381739 CCGAAGGC
1 CCGAAGGC
24381747 CTTGTACAAG
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAT
Found at i:24381696 original size:80 final size:80
Alignment explanation
Indices: 24381563--24381746 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
24381553 TATTCGAATG
* * * * **
24381563 ATATCCAGGCCAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGAACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAACGACTATATCCGAACTAAG-TCCCGAAGGC
* *
24381627 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * **
24381643 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCTAACGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAACGACTATATCCGAACTAAGTCCCGAAGGCA
*
24381708 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
24381723 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
24381747 CTTGTACAAG
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 3 0.03
80 85 0.97
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAACGACTATATCCGAACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:24383308 original size:27 final size:27
Alignment explanation
Indices: 24383253--24383312 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
24383243 AGCATAGCTT
* *
24383253 CCAGAAACAGTAAATGTGCCAAAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
* * *
24383280 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
24383307 CCAGTA
1 CCAGTA
24383313 CAATAATTCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGCCA
Found at i:24383472 original size:27 final size:27
Alignment explanation
Indices: 24383453--24383832 Score: 350
Period size: 27 Copynumber: 14.4 Consensus size: 27
24383443 GGGCATAATC
* * *
24383453 GTCATTTTACCATACAAGGGTATTACT
1 GTCATTTTACCCTACAAGGGCATTACG
* *
24383480 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
* * **
24383507 GTCATTCTACCCTACAAGGGTATTGTG
1 GTCATTTTACCCTACAAGGGCATTACG
*
24383534 GTCATTTTACCCTA-TA-GG------G
1 GTCATTTTACCCTACAAGGGCATTACG
* * * *
24383553 G-CATTTTATCCTACAGGGGTATTATG
1 GTCATTTTACCCTACAAGGGCATTACG
* * * *
24383579 ATCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
* * *
24383606 GTCATTTTACCGTATAGGGGCATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
* * * *
24383633 GTCATTTTACCTTACAGGGGTATCACG
1 GTCATTTTACCCTACAAGGGCATTACG
* ***
24383660 GTCATTTTACCCCATTGGGGCATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
* *
24383687 ATCATTTTACCCTAC-AGGGTATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
*
24383713 GTCATTTTACCCTACAGGGGCATTA-G
1 GTCATTTTACCCTACAAGGGCATTACG
24383739 GATCATTTTACCCTACAAGGGCATTACG
1 G-TCATTTTACCCTACAAGGGCATTACG
* * *
24383767 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAAGGGCATTACG
*
24383794 GTCATTTTACTCTACAAGGGCATTACG
1 GTCATTTTACCCTACAAGGGCATTACG
24383821 GTCATTTTACCC
1 GTCATTTTACCC
24383833 ATTCTGGGGT
Statistics
Matches: 291, Mismatches: 50, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
18 11 0.04
19 2 0.01
20 2 0.01
25 2 0.01
26 27 0.09
27 245 0.84
28 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGCATTACG
Found at i:24383525 original size:54 final size:54
Alignment explanation
Indices: 24383453--24383832 Score: 404
Period size: 54 Copynumber: 7.2 Consensus size: 54
24383443 GGGCATAATC
* * *
24383453 GTCATTTTACCATACAAGGGTATTACTATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* * ** * *
24383507 GTCATTCTACCCTACAAGGGTATTGTGGTCATTTTACCCTATA--GG------G
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* * * *
24383553 G-CATTTTATCCTACAGGGGTATTATGATCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* * * * * * *
24383606 GTCATTTTACCGTATAGGGGCATTACGGTCATTTTACCTTACAGGGGTATCACG
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* ** * *
24383660 GTCATTTTACCCCATTGGGGCATTACGATCATTTTACCCTACA-GGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* * *
24383713 GTCATTTTACCCTACAGGGGCATTAGGATCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
* *
24383767 GTCATTTTACCCTACAGGGGTATTAC-AGTCATTTTACTCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACGA-TCATTTTACCCTACAGGGGCATTACG
24383821 GTCATTTTACCC
1 GTCATTTTACCC
24383833 ATTCTGGGGT
Statistics
Matches: 280, Mismatches: 35, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
45 36 0.13
46 2 0.01
47 2 0.01
52 2 0.01
53 51 0.18
54 187 0.67
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (54 bp):
GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACG
Found at i:24383559 original size:18 final size:18
Alignment explanation
Indices: 24383536--24383571 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24383526 GTATTGTGGT
*
24383536 CATTTTACCCTATAGGGG
1 CATTTTACCCTACAGGGG
*
24383554 CATTTTATCCTACAGGGG
1 CATTTTACCCTACAGGGG
24383572 TATTATGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
CATTTTACCCTACAGGGG
Found at i:24383600 original size:72 final size:72
Alignment explanation
Indices: 24383482--24383786 Score: 223
Period size: 80 Copynumber: 4.0 Consensus size: 72
24383472 GTATTACTAT
* **
24383482 CATTTTACCCTACAGGGGCATTACGGTCATTCTACCCTACAAGGGTATTGTGGTCATTTTACCCT
1 CATTTTACCCTACAGGGGCATTACGATCATTCTACCCTACAAGGGTATTACGGTCATTTTACCCT
24383547 ATAGGGG
66 ATAGGGG
* * * * * * *
24383554 CATTTTATCCTACAGGGGTATTATGATCATTTTACCCTATAGGGGTATTACGGTCATTTTACCGT
1 CATTTTACCCTACAGGGGCATTACGATCATTCTACCCTACAAGGGTATTACGGTCATTTTACCCT
24383619 ATAGGGGCATTACGG
66 ATA--GG------GG
* * * * * * *** * *
24383634 TCATTTTACCTTACAGGGGTATCACGGTCATTTTACCCCATTGGGGCATTACGATCATTTTACCC
1 -CATTTTACCCTACAGGGGCATTACGATCATTCTACCCTACAAGGGTATTACGGTCATTTTACCC
*
24383699 TACAGGGTATTACGG
65 TATA-GG------GG
* * *
24383714 TCATTTTACCCTACAGGGGCATTAGGATCATTTTACCCTACAAGGGCATTACGGTCATTTTACCC
1 -CATTTTACCCTACAGGGGCATTACGATCATTCTACCCTACAAGGGTATTACGGTCATTTTACCC
*
24383779 TACAGGGG
65 TATAGGGG
24383787 TATTACAGTC
Statistics
Matches: 192, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
72 58 0.30
73 2 0.01
74 2 0.01
79 2 0.01
80 71 0.37
81 57 0.30
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (72 bp):
CATTTTACCCTACAGGGGCATTACGATCATTCTACCCTACAAGGGTATTACGGTCATTTTACCCT
ATAGGGG
Found at i:24383764 original size:134 final size:135
Alignment explanation
Indices: 24383554--24383832 Score: 382
Period size: 134 Copynumber: 2.1 Consensus size: 135
24383544 CCTATAGGGG
* * * * *
24383554 CATTTTATCCTACAGGGGTATTATGATCATTTTACCCTATAGGGGTATTACGGTCATTTTACCGT
1 CATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCT
* * * * ***
24383619 ATAGGGGCATTACGGTCATTTTACCTTACAGGGGTATCACGGTCATTTTACCCCATTGGGGCATT
66 ACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATCACAGTCATTTTACCCCACAAGGGCATT
24383684 ACGAT
131 ACGAT
*
24383689 CATTTTACCCTACA-GGGTATTACGGTCATTTTACCCTACAGGGGCATTA-GGATCATTTTACCC
1 CATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACGG-TCATTTTACCC
* * *
24383752 TACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACTCTACAAGGGCAT
65 TACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATCACAGTCATTTTACCCCACAAGGGCAT
*
24383817 TACGGT
130 TACGAT
24383823 CATTTTACCC
1 CATTTTACCC
24383833 ATTCTGGGGT
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
133 2 0.02
134 111 0.88
135 13 0.10
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (135 bp):
CATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCT
ACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATCACAGTCATTTTACCCCACAAGGGCATT
ACGAT
Found at i:24385111 original size:12 final size:12
Alignment explanation
Indices: 24385096--24385122 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24385086 AATTATGGAG
24385096 AAGAGAAAAGAA
1 AAGAGAAAAGAA
24385108 AAGAGAAAAGAA
1 AAGAGAAAAGAA
24385120 AAG
1 AAG
24385123 CTTTAGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AAGAGAAAAGAA
Found at i:24427973 original size:26 final size:26
Alignment explanation
Indices: 24427934--24427985 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24427924 CGGTCATAAC
*
24427934 GTCTAGGCCGGGTTTGGGGTGTTACA
1 GTCTAGGCCAGGTTTGGGGTGTTACA
* *
24427960 GTCTGGGCCAGGTTTGGGTTGTTACA
1 GTCTAGGCCAGGTTTGGGGTGTTACA
24427986 TATTCCCAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.15, G:0.40, T:0.33
Consensus pattern (26 bp):
GTCTAGGCCAGGTTTGGGGTGTTACA
Found at i:24439555 original size:17 final size:17
Alignment explanation
Indices: 24439507--24439569 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
24439497 GCGGTTAAGT
*
24439507 TCACCTGGCGGACAGCA
1 TCACCTGGCAGACAGCA
* * *
24439524 TCACCTAGAAAACAGCA
1 TCACCTGGCAGACAGCA
* *
24439541 TCACTTGGCAGACAGTA
1 TCACCTGGCAGACAGCA
* *
24439558 TTACTTGGCAGA
1 TCACCTGGCAGA
24439570 TAGAATTCCC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (17 bp):
TCACCTGGCAGACAGCA
Found at i:24441752 original size:27 final size:26
Alignment explanation
Indices: 24441722--24441775 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
24441712 TAAAATTATC
24441722 ATTTTACCCCTAGGGTGGTAAATGACT
1 ATTTTACCCCTAGGGT-GTAAATGACT
* * *
24441749 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTACCCCTAGGGTGTAAATGACT
24441775 A
1 A
24441776 ACTTGTGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
ATTTTACCCCTAGGGTGTAAATGACT
Found at i:24449777 original size:27 final size:26
Alignment explanation
Indices: 24449733--24449784 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
24449723 CTCGCTGCAA
*
24449733 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
24449760 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
24449785 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:24449861 original size:27 final size:26
Alignment explanation
Indices: 24449823--24449882 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
24449813 CCACATATAT
*
24449823 AATA-CTGTTCTGGTGGCCTAGCCAC
1 AATATCTGTTCTGGTGACCTAGCCAC
* * *
24449848 AATATCTGTATCTGGTGACTTCGTCAC
1 AATATCTGT-TCTGGTGACCTAGCCAC
24449875 AATATCTG
1 AATATCTG
24449883 GACCTCGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.14
26 4 0.14
27 21 0.72
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (26 bp):
AATATCTGTTCTGGTGACCTAGCCAC
Found at i:24469496 original size:40 final size:40
Alignment explanation
Indices: 24469441--24469665 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
24469431 TATTCGGATG
*
24469441 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
24469481 ATATCCGGGCTAAGTCCTAAAGGCATTTGTCCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
24469524 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
24469564 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
24469604 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
24469644 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24469666 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
39 14 0.09
40 106 0.68
41 1 0.01
43 35 0.22
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:24469587 original size:83 final size:80
Alignment explanation
Indices: 24469447--24469635 Score: 243
Period size: 83 Copynumber: 2.3 Consensus size: 80
24469437 GATGATATCT
* * * *
24469447 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCTAAAGGCATTTGTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCAAAGGCATGTGT-
*
24469512 CGAGTAGTTGCTATACCC
65 -GAG-AGTTACTATACCC
* * * *
24469530 GGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCAAAGGCATGTGTG
* *
24469595 CGAGTTACTATATCC
66 AGAGTTACTATACCC
*
24469610 GGGTTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGC
24469636 GAGTTGCGAT
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 35 0.38
81 2 0.02
83 56 0.60
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCAAAGGCATGTGTG
AGAGTTACTATACCC
Found at i:24477867 original size:40 final size:40
Alignment explanation
Indices: 24477812--24478036 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
24477802 TATTCGGATG
*
24477812 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
24477852 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
24477895 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
24477935 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
24477975 ATATCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
24478015 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24478037 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 109 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:24477957 original size:83 final size:80
Alignment explanation
Indices: 24477818--24478036 Score: 273
Period size: 83 Copynumber: 2.7 Consensus size: 80
24477808 GATGATATCT
* * *
24477818 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTGTG
*
24477883 CGAGTAGTTGCTATACCC
66 C--G-AGTTACTATACCC
* *
24477901 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTGTG
*
24477966 CGAGTTACTATATCC
66 CGAGTTACTATACCC
* * * *
24477981 GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAA-ATCCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGA-CCCGAAGG
24478037 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.11
80 43 0.35
81 3 0.02
83 61 0.50
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTGTG
CGAGTTACTATACCC
Found at i:24481023 original size:21 final size:19
Alignment explanation
Indices: 24480981--24481023 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
24480971 TTTTAATTTC
* *
24480981 TTTCTTTTCTTCCTACCAA
1 TTTCTATTCTTCCCACCAA
24481000 TTTCTATTCTTCTCCACACAA
1 TTTCTATTCTTC-CCAC-CAA
24481021 TTT
1 TTT
24481024 TCTTTGCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.19, C:0.30, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTCTATTCTTCCCACCAA
Found at i:24481780 original size:28 final size:29
Alignment explanation
Indices: 24481670--24481784 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
24481660 GTGAGCATGA
* **
24481670 ATATGAATGTGA-CTGGGCCTAACCGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
24481698 ATATAAATGTGATTTGGGCCTAATGGGAC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
24481727 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
24481756 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
24481784 A
1 A
24481785 GATACAAGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:24484204 original size:14 final size:14
Alignment explanation
Indices: 24484185--24484220 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
24484175 CCTAGGGCTA
24484185 GGGCCAGAGTTAAT
1 GGGCCAGAGTTAAT
24484199 GGGCCAGAGTTAAT
1 GGGCCAGAGTTAAT
*
24484213 GGACCAGA
1 GGGCCAGA
24484221 TAGAGCAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.17, G:0.36, T:0.17
Consensus pattern (14 bp):
GGGCCAGAGTTAAT
Found at i:24484734 original size:16 final size:16
Alignment explanation
Indices: 24484713--24484743 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24484703 TTGTAACGCT
*
24484713 CCAAAAATCTCGAAAC
1 CCAAAAATCCCGAAAC
24484729 CCAAAAATCCCGAAA
1 CCAAAAATCCCGAAA
24484744 TCCTAAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.32, G:0.06, T:0.10
Consensus pattern (16 bp):
CCAAAAATCCCGAAAC
Found at i:24485408 original size:21 final size:19
Alignment explanation
Indices: 24485366--24485408 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
24485356 TTTATTTTTC
* *
24485366 TTTCTTTTCTTCCTGCCAA
1 TTTCTATTCTTCCTACCAA
24485385 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
24485406 TTT
1 TTT
24485409 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.16, C:0.28, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:24486105 original size:29 final size:29
Alignment explanation
Indices: 24486048--24486147 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 29
24486038 GTGAGCATGA
* * * *
24486048 ATATGAATGTGA-CTGGGCCTAACGAGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
24486076 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
24486105 ATATATAGGCGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
24486134 ATATGAATATGATT
1 ATATAAATGTGATT
24486148 GGCTTTAATG
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 11 0.19
29 48 0.81
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:24486135 original size:58 final size:57
Alignment explanation
Indices: 24486061--24486170 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
24486051 TGAATGTGAC
* *
24486061 TGGGCCTAACGAGCCATATAAATGTGATTTGGGC-CTAATGGGCCATATATAGGCGATT
1 TGGGCCTAACGAGCCATATAAATATGA-TT-GGCTCTAATGGGCCAGATATAGGCGATT
* * * *
24486119 TGGGCCTAATGGGCCATATGAATATGATTGGCTTTAATGGGCCAGATATAGG
1 TGGGCCTAACGAGCCATATAAATATGATTGGCTCTAATGGGCCAGATATAGG
24486171 TATATGAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 3 0.07
57 19 0.42
58 23 0.51
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGAGCCATATAAATATGATTGGCTCTAATGGGCCAGATATAGGCGATT
Found at i:24487068 original size:15 final size:15
Alignment explanation
Indices: 24487036--24487074 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
24487026 GGCTTCCTTC
*
24487036 TTATTATTATTTGGA
1 TTATTATTATTTGCA
*
24487051 TTATTATTATTTTCA
1 TTATTATTATTTGCA
*
24487066 TTATAATTA
1 TTATTATTA
24487075 CGAGAAGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTATTTGCA
Found at i:24488729 original size:38 final size:38
Alignment explanation
Indices: 24488679--24488774 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 38
24488669 CCAACTCTGT
* *
24488679 CCAACCCAACACACCATGTAGGGATAAAATCAACCCAC
1 CCAACCCTACACACCATATAGGGATAAAATCAACCCAC
* * * *
24488717 CCATCCCTACACACCACATATGGGGATAAAATCGACCCAT
1 CCAACCCTACACA-C-CATATAGGGATAAAATCAACCCAC
24488757 CCAACCCTACACACCATA
1 CCAACCCTACACACCATA
24488775 AAGTACCGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
38 15 0.31
39 2 0.04
40 32 0.65
ACGTcount: A:0.39, C:0.39, G:0.09, T:0.14
Consensus pattern (38 bp):
CCAACCCTACACACCATATAGGGATAAAATCAACCCAC
Found at i:24496154 original size:43 final size:43
Alignment explanation
Indices: 24496093--24496179 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
24496083 TTAGAGTATG
24496093 TCCAAAGACCAATCATGAGATGATTATAATTACATACTCATTT
1 TCCAAAGACCAATCATGAGATGATTATAATTACATACTCATTT
*
24496136 TCCAAAGACCAATCATGAGATGATTATAATTACATACTCGTTT
1 TCCAAAGACCAATCATGAGATGATTATAATTACATACTCATTT
24496179 T
1 T
24496180 ACCTTGTCTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (43 bp):
TCCAAAGACCAATCATGAGATGATTATAATTACATACTCATTT
Found at i:24515117 original size:28 final size:28
Alignment explanation
Indices: 24515073--24515131 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
24515063 ACCTAAACCG
*
24515073 ACCAATTTGTTCATATCCATT-CGTTCAT
1 ACCAATTTGTTCATAT-CATTCCATTCAT
* *
24515101 ACCATTTTGTTCCTATCATTCCATTCAT
1 ACCAATTTGTTCATATCATTCCATTCAT
24515129 ACC
1 ACC
24515132 CCTCTTTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.42
Consensus pattern (28 bp):
ACCAATTTGTTCATATCATTCCATTCAT
Found at i:24523391 original size:59 final size:60
Alignment explanation
Indices: 24523294--24523406 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 60
24523284 AAAAAATCCC
* * *
24523294 TTTTCAAATTTTTATTATTTTTGTTTACCAAAATTATAAACCGTAATTAAAAAAAACTTT
1 TTTTCAAATTTTTAATATTTTCGTTTACCAAAACTATAAACCGTAATTAAAAAAAACTTT
* * *
24523354 TTTTCAAA-TTTTAATATTTTCGTTTCCCCAAACTATAAACCGTAGTTAAAAAA
1 TTTTCAAATTTTTAATATTTTCGTTTACCAAAACTATAAACCGTAATTAAAAAA
24523407 TAACCCATTC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
59 39 0.83
60 8 0.17
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (60 bp):
TTTTCAAATTTTTAATATTTTCGTTTACCAAAACTATAAACCGTAATTAAAAAAAACTTT
Found at i:24524427 original size:40 final size:40
Alignment explanation
Indices: 24524348--24524515 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
24524338 CGGATGATAA
* * * * *
24524348 CCGGACTAAGATCCAAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
24524388 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
24524428 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
24524468 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
24524508 CC-GGCTAA
1 CCGGGCTAA
24524516 ATCTCGAAGA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 8 0.07
40 99 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:24524486 original size:80 final size:79
Alignment explanation
Indices: 24524363--24524524 Score: 238
Period size: 80 Copynumber: 2.0 Consensus size: 79
24524353 CTAAGATCCA
* * *
24524363 AAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATA
1 AAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATA
24524427 TCCGGGCTAAGA-CTCG
65 TCC-GGCTAA-ATCTCG
* *
24524443 AAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 AAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
24524508 CCGGCTAAATCTCG
66 CCGGCTAAATCTCG
24524522 AAG
1 AAG
24524525 ATACTTGGGT
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
78 1 0.01
79 13 0.17
80 59 0.79
81 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
AAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
CCGGCTAAATCTCG
Found at i:24524792 original size:22 final size:22
Alignment explanation
Indices: 24524752--24524793 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24524742 GAATGTGCAT
*
24524752 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
24524774 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
24524794 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:24542162 original size:26 final size:25
Alignment explanation
Indices: 24542113--24542162 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
24542103 TAAACAAATC
* * *
24542113 AATTATTAATATGAATAGTCGATTT
1 AATTATTAACATCAATAGCCGATTT
24542138 AATTATTAACATCACATAGCCGATT
1 AATTATTAACATCA-ATAGCCGATT
24542163 GTAACTTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (25 bp):
AATTATTAACATCAATAGCCGATTT
Found at i:24547390 original size:22 final size:22
Alignment explanation
Indices: 24547324--24547390 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
24547314 ATTTTTCTAT
*
24547324 GACACAAGGTCATACGCCCGTGTG
1 GACACAAGGACAT--GCCCGTGTG
* *
24547348 GACACAGGGACATGCCAGTGTG
1 GACACAAGGACATGCCCGTGTG
24547370 GACACAAGGACACT-CCCGTGT
1 GACACAAGGACA-TGCCCGTGT
24547391 CCTCAAGCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 25 0.68
23 1 0.03
24 11 0.30
ACGTcount: A:0.27, C:0.28, G:0.30, T:0.15
Consensus pattern (22 bp):
GACACAAGGACATGCCCGTGTG
Found at i:24550850 original size:6 final size:6
Alignment explanation
Indices: 24550822--24550896 Score: 91
Period size: 6 Copynumber: 12.7 Consensus size: 6
24550812 TATGTCTTTC
* * *
24550822 AAAAT- AAAATA ATAAATT GAAATG AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
24550870 AAAAT- AAAATA AAAATA AGAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
24550897 AAAGATAGGA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
5 10 0.17
6 46 0.77
7 4 0.07
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:24550879 original size:29 final size:30
Alignment explanation
Indices: 24550822--24550896 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
24550812 TATGTCTTTC
**
24550822 AAAAT-AAAATAATAAATTGAAATGAAAATA
1 AAAATAAAAATAA-AAATAAAAATGAAAATA
24550852 AAAATAAAAATAAAAATAAAAAT-AAAATA
1 AAAATAAAAATAAAAATAAAAATGAAAATA
*
24550881 AAAATAAGAATAAAAA
1 AAAATAAAAATAAAAA
24550897 AAAGATAGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 21 0.51
30 13 0.32
31 7 0.17
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (30 bp):
AAAATAAAAATAAAAATAAAAATGAAAATA
Found at i:24555386 original size:47 final size:47
Alignment explanation
Indices: 24555317--24555438 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
24555307 CCCATAAGTG
24555317 AACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCTCA
1 AACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCTCA
* *
24555364 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCG
1 AACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCTCA
*
24555411 AACTCGGACTCAACTCAACGAGTTCGAA
1 AACTCGGACTCAACTCAACGAGCTCGAA
24555439 CATTCGCATC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCTCA
Found at i:24557904 original size:15 final size:15
Alignment explanation
Indices: 24557881--24557958 Score: 72
Period size: 15 Copynumber: 5.3 Consensus size: 15
24557871 AAGAAAAACG
24557881 GATAAAGAAATCCAA
1 GATAAAGAAATCCAA
* *
24557896 GATAGAGAAA-CCCA
1 GATAAAGAAATCCAA
*
24557910 GAATAAAGAGATCC-A
1 G-ATAAAGAAATCCAA
*
24557925 GAATAAAG-AATCCAG
1 G-ATAAAGAAATCCAA
*
24557940 GATAAAGAAACCCAA
1 GATAAAGAAATCCAA
24557955 GATA
1 GATA
24557959 CGATACTATG
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 14 0.27
15 35 0.69
16 2 0.04
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
GATAAAGAAATCCAA
Found at i:24557917 original size:30 final size:29
Alignment explanation
Indices: 24557882--24557958 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
24557872 AGAAAAACGG
*
24557882 ATAAAGAAATCCAAGATAGAGAAACCCAGA
1 ATAAAGAAATCCAAGATAAAG-AACCCAGA
* * *
24557912 ATAAAGAGATCC-AGAATAAAGAATCCAGG
1 ATAAAGAAATCCAAG-ATAAAGAACCCAGA
*
24557941 ATAAAGAAACCCAAGATA
1 ATAAAGAAATCCAAGATA
24557959 CGATACTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (29 bp):
ATAAAGAAATCCAAGATAAAGAACCCAGA
Found at i:24557939 original size:14 final size:14
Alignment explanation
Indices: 24557907--24557948 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
24557897 ATAGAGAAAC
24557907 CCAGAATAAAGAGAT
1 CCAGAATAAAGA-AT
24557922 CCAGAATAAAGAAT
1 CCAGAATAAAGAAT
*
24557936 CCAGGATAAAGAA
1 CCAGAATAAAGAA
24557949 ACCCAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.55, C:0.14, G:0.19, T:0.12
Consensus pattern (14 bp):
CCAGAATAAAGAAT
Found at i:24572679 original size:44 final size:44
Alignment explanation
Indices: 24572602--24572689 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
24572592 ATTACATGTA
* * *
24572602 TCGCATCCATTATGAACTCGGACCAATTCAACGAGTTCAGATGC
1 TCGCATCCATTATGAACTCGGACCAACTCAACGAGCTCAAATGC
* * *
24572646 TCGCATCCA-TAGTGAACTTGGACTAACTGAACGAGCTCAAATGC
1 TCGCATCCATTA-TGAACTCGGACCAACTCAACGAGCTCAAATGC
24572690 CTCGTATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (44 bp):
TCGCATCCATTATGAACTCGGACCAACTCAACGAGCTCAAATGC
Found at i:24574268 original size:27 final size:27
Alignment explanation
Indices: 24574238--24574329 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
24574228 ATTACCAAAG
* * *
24574238 TACCCTCAATTTATAAAATCACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
24574265 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
24574292 TACCATCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
24574319 TACCCTCGATT
1 TACCCTCGATT
24574330 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:24574351 original size:27 final size:27
Alignment explanation
Indices: 24574328--24574511 Score: 99
Period size: 27 Copynumber: 6.8 Consensus size: 27
24574318 TTACCCTCGA
*
24574328 TTGTGAAATTACTGAAATACCCCT-A-
1 TTGTGAAATTACTAAAATACCCCTGAC
* * * *
24574353 TAGGGTAGAATTACCAAAATACCCCTGAT
1 TTGTG-A-AATTACTAAAATACCCCTGAC
*
24574382 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTGAAATTACTAAAATACCCCT-GAC
* * *
24574409 TTGTAAAATTACTAAAATA-CCCTTAG
1 TTGTGAAATTACTAAAATACCCCTGAC
* * * **
24574435 TT-TACAAAATTACCAAAACACCCCTGGT
1 TTGT--GAAATTACTAAAATACCCCTGAC
* * * * *
24574463 TTGTAAAATTACCAAAAGACACCTGAT
1 TTGTGAAATTACTAAAATACCCCTGAC
**
24574490 TTGTGAAATTACCGAAATACCC
1 TTGTGAAATTACTAAAATACCC
24574512 TTAGTTTGCA
Statistics
Matches: 125, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
25 4 0.03
26 8 0.06
27 101 0.81
28 8 0.06
29 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
TTGTGAAATTACTAAAATACCCCTGAC
Found at i:24574446 original size:81 final size:79
Alignment explanation
Indices: 24574319--24574560 Score: 238
Period size: 81 Copynumber: 3.0 Consensus size: 79
24574309 ATTACCGTTT
** * *
24574319 TACCCTCGATTGTGAAATTACTGAAATACCCCTATAGGGT-AGAATTACCAAAATACCCCTGATT
1 TACCCTCGATTGTGAAATTACTGAAATA-CCCT-TAGTTTCAAAATTACCAAAACACCCCTGATT
* **
24574383 TGTGAAATTACTGAAA
64 TGTAAAATTACCAAAA
* * *
24574399 TACCCTCGACTTGTAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAACACCCCTGGTT
1 TACCCTCGA-TTGTGAAATTACTGAAATACCCTTAGTTT-CAAAATTACCAAAACACCCCTGATT
24574464 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* * *** *
24574480 GACACCT-GATTTGTGAAATTACCGAAATACCCTTAGTTTGCAAAATTAATGAAATA-CCCTCGA
1 TAC-CCTCGA-TTGTGAAATTACTGAAATACCCTTAGTTT-CAAAATTACCAAAACACCCCT-GA
24574543 TTTGTAAAAATTACCAAA
62 TTTGT-AAAATTACCAAA
24574561 GTATCCTGAA
Statistics
Matches: 135, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
79 4 0.03
80 17 0.13
81 99 0.73
82 15 0.11
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (79 bp):
TACCCTCGATTGTGAAATTACTGAAATACCCTTAGTTTCAAAATTACCAAAACACCCCTGATTTG
TAAAATTACCAAAA
Found at i:24574519 original size:27 final size:27
Alignment explanation
Indices: 24574361--24574560 Score: 138
Period size: 27 Copynumber: 7.4 Consensus size: 27
24574351 TATAGGGTAG
* *
24574361 AATTACCAAAATACCCCT-GATTTGTGA
1 AATTACCAAAATACCCTTAG-TTTGTAA
** * *
24574388 AATTACTGAAATACCC-TCGACTTGTAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* **
24574415 AATTACTAAAATACCCTTAGTTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
24574442 AATTACCAAAACACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
24574469 AATTACCAAAAGACACCTGA-TTTGTGA
1 AATTACCAAAATAC-CCTTAGTTTGTAA
* *
24574496 AATTACCGAAATACCCTTAGTTTGCAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*** *
24574523 AATTAATGAAATACCC-TCGATTTGTAAA
1 AATTACCAAAATACCCTTAG-TTTGT-AA
24574551 AATTACCAAA
1 AATTACCAAA
24574561 GTATCCTGAA
Statistics
Matches: 135, Mismatches: 32, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
26 7 0.05
27 115 0.85
28 13 0.10
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:24574519 original size:54 final size:53
Alignment explanation
Indices: 24574319--24574557 Score: 180
Period size: 54 Copynumber: 4.4 Consensus size: 53
24574309 ATTACCGTTT
* * *
24574319 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTATAG--GGTAGAATTACCAAAA
1 TACCCT-GATTTGTGAAATTACCGAAATA-CCCT-TAGTTTGTAAAATTACCAAAA
* * * *
24574372 TACCCCTGATTTGTGAAATTACTGAAATACCC-TCGACTTGTAAAATTACTAAAA
1 TA-CCCTGATTTGTGAAATTACCGAAATACCCTTAG-TTTGTAAAATTACCAAAA
* *** * * * *
24574426 TACCCTTAGTTTACAAAATTACCAAAACACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTGA-TTTGTGAAATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAA
* * ***
24574480 GACACCTGATTTGTGAAATTACCGAAATACCCTTAGTTTGCAAAATTAATGAAA
1 TAC-CCTGATTTGTGAAATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAA
*
24574534 TACCCTCGATTTGTAAAAATTACC
1 TACCCT-GATTTGT-GAAATTACC
24574558 AAAGTATCCT
Statistics
Matches: 147, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
51 2 0.01
53 15 0.10
54 116 0.79
55 14 0.10
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (53 bp):
TACCCTGATTTGTGAAATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAA
Done.