Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 79 of 332
Found at i:24574635 original size:27 final size:27
Alignment explanation
Indices: 24574612--24574692 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
24574602 CAAAATTATT
24574612 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
24574639 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
24574666 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
24574693 ATTTTGCCCC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:24577380 original size:27 final size:27
Alignment explanation
Indices: 24577350--24577441 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
24577340 ATTACCAAAG
* * * *
24577350 TACCCTCAATTTATAGAATCACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
24577377 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
24577404 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
24577431 TACCCTCGATT
1 TACCCTCGATT
24577442 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:24577503 original size:27 final size:27
Alignment explanation
Indices: 24577473--24577699 Score: 224
Period size: 27 Copynumber: 8.4 Consensus size: 27
24577463 TTTAGGGTAG
*
24577473 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
24577500 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
** * * *
24577527 AATTACTGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
** ** **
24577554 AATTACCAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
*
24577581 AATTACCAAAATACCCCTATTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
24577608 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
24577635 AATTAGCAAAATA-CCCTCAGTTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
** *
24577662 AATTACTGAAATA-CCCTCGATTTGTAAA
1 AATTACCAAAATACCCCT-AATTTGT-AA
24577690 AATTACCAAA
1 AATTACCAAA
24577700 GTATCCTGGA
Statistics
Matches: 165, Mismatches: 33, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
26 4 0.02
27 151 0.92
28 10 0.06
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:24577512 original size:54 final size:52
Alignment explanation
Indices: 24577440--24577677 Score: 162
Period size: 54 Copynumber: 4.4 Consensus size: 52
24577430 TTACCCTCGA
* **
24577440 TTGTGAAATTACTGAAATACCCCTTTAGGGTAGAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTTT-GGGTA-AATTACCAAAATACCCCTAAT
* * ** * * *
24577494 TTGTGAAATTACCAAAATACCCCTAATT-TGTGAAATTACTGAAATACCCTTGAC
1 TTGTAAAATTACCAAAATACCCCT--TTGGGT-AAATTACCAAAATACCCCTAAT
* * *
24577548 TTGTAAAATTACCAAAATA--CCATTGGTTTACAAAATTACCAAAATACCCCTATT
1 TTGTAAAATTACCAAAATACCCCTTTGG-GT---AAATTACCAAAATACCCCTAAT
* * *
24577602 TTGTAAAATTACCAAAATACCCCTGATT-TGTGAAATTAGCAAAATA-CCCTCAGT
1 TTGTAAAATTACCAAAATACCCCT--TTGGGT-AAATTACCAAAATACCCCT-AAT
**
24577656 TTGTAAAATTACTGAAATACCC
1 TTGTAAAATTACCAAAATACCC
24577678 TCGATTTGTA
Statistics
Matches: 145, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
50 2 0.01
52 3 0.02
53 4 0.03
54 128 0.88
55 1 0.01
56 5 0.03
58 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (52 bp):
TTGTAAAATTACCAAAATACCCCTTTGGGTAAATTACCAAAATACCCCTAAT
Found at i:24577558 original size:81 final size:80
Alignment explanation
Indices: 24577440--24577677 Score: 253
Period size: 81 Copynumber: 2.9 Consensus size: 80
24577430 TTACCCTCGA
* ** * * *
24577440 TTGTGAAATTACTGAAATACCCCTTTAGGGTAGAATTACCAAAATACCCCTAATTTGTGAAATTA
1 TTGTGAAATTACTGAAATA-CCCTTGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTA
24577505 CCAAAATACCCCTAAT
65 CCAAAATACCCCTAAT
** * **
24577521 TTGTGAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTA
1 TTGTGAAATTACTGAAATACCCTTGA-TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTA
*
24577586 CCAAAATACCCCTATT
65 CCAAAATACCCCTAAT
* ** * * *
24577602 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTAGCAAAATA-CCCTCAGTTTGTAAAATT
1 TTGTGAAATTACTGAAATACCCTTGA-TTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATT
**
24577666 ACTGAAATACCC
64 ACCAAAATACCC
24577678 TCGATTTGTA
Statistics
Matches: 129, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 8 0.06
81 121 0.94
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
TTGTGAAATTACTGAAATACCCTTGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
CAAAATACCCCTAAT
Found at i:24577712 original size:28 final size:27
Alignment explanation
Indices: 24577333--24577699 Score: 124
Period size: 27 Copynumber: 13.6 Consensus size: 27
24577323 TGCCCTAGAC
*
24577333 TTGTAAAATTAC-CAAAGTACCCTCAAT
1 TTGTAAAATTACTCAAA-TACCCTCGAT
* * * **
24577360 TTATAGAATCACT-ATTTTACCCTCGAT
1 TTGTAAAATTACTCA-AATACCCTCGAT
** ****
24577387 TTACAAAATTACTGTTTTACCCTCGAT
1 TTGTAAAATTACTCAAATACCCTCGAT
** **
24577414 TTACAAAATTACT-ATTTTACCCTCGA-
1 TTGTAAAATTACTCA-AATACCCTCGAT
* *
24577440 TTGTGAAATTACTGAAATACCC-C--T
1 TTGTAAAATTACTCAAATACCCTCGAT
* *
24577464 TTAGGGTAGAATTAC-CAAAATACCC-CTAAT
1 TT---GTAAAATTACTC-AAATACCCTC-GAT
* *
24577494 TTGTGAAATTAC-CAAAATACCC-CTAAT
1 TTGTAAAATTACTC-AAATACCCTC-GAT
* * * *
24577521 TTGTGAAATTACTGAAATACCCTTGAC
1 TTGTAAAATTACTCAAATACCCTCGAT
* * *
24577548 TTGTAAAATTAC-CAAAATACCATTGGT
1 TTGTAAAATTACTC-AAATACCCTCGAT
** *
24577575 TTACAAAATTAC-CAAAATACCC-CTATT
1 TTGTAAAATTACTC-AAATACCCTCGA-T
24577602 TTGTAAAATTAC-CAAAATACCC-CTGAT
1 TTGTAAAATTACTC-AAATACCCTC-GAT
* *
24577629 TTGTGAAATTAGC-AAAATACCCTC-AGT
1 TTGTAAAATTA-CTCAAATACCCTCGA-T
*
24577656 TTGTAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACTCAAATACCCTCGAT
24577683 TTGTAAAAATTAC-CAAA
1 TTGT-AAAATTACTCAAA
24577700 GTATCCTGGA
Statistics
Matches: 272, Mismatches: 44, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
24 2 0.01
25 1 0.00
26 17 0.06
27 237 0.87
28 12 0.04
30 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTCAAATACCCTCGAT
Found at i:24577774 original size:27 final size:27
Alignment explanation
Indices: 24577751--24577911 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
24577741 CAAAATTATT
24577751 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
24577778 AAAATACCCCTGTAGGCTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
24577805 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
24577832 GAAATACCCTTATAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
24577859 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
24577886 GAGATA-CCCTAGTGGGGTAAAATTAC
1 GAAATACCCCT-GTAGGGTAGAATTAC
24577912 TATTTTGCCC
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 112 0.97
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:24577786 original size:54 final size:54
Alignment explanation
Indices: 24577728--24577895 Score: 198
Period size: 54 Copynumber: 3.1 Consensus size: 54
24577718 ATTATCGTTT
** * *
24577728 TACCCTTGATTTACAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAA
1 TACCCTTGATAGACAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
24577782 TACCCCTG-TAGGCTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 TACCCTTGATAGAC-AAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
24577836 TACCCTT-ATAGGATAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACCGAGA
1 TACCCTTGATA-GACA-AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
24577890 TACCCT
1 TACCCT
24577896 AGTGGGGTAA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.02
54 92 0.95
55 3 0.03
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (54 bp):
TACCCTTGATAGACAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
Found at i:24579102 original size:11 final size:10
Alignment explanation
Indices: 24579086--24579119 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
24579076 ATTATTGTTA
24579086 TTTTTTTATT
1 TTTTTTTATT
24579096 TTTTTTTATT
1 TTTTTTTATT
*
24579106 TTTTTTTCTT
1 TTTTTTTATT
24579116 TTTT
1 TTTT
24579120 CTAAATTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.06, C:0.03, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:24579106 original size:18 final size:18
Alignment explanation
Indices: 24579083--24579119 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
24579073 AAAATTATTG
24579083 TTATTTTTTTATT-TTTTT
1 TTATTTTTTT-TTCTTTTT
24579101 TTATTTTTTTTTCTTTTT
1 TTATTTTTTTTTCTTTTT
24579119 T
1 T
24579120 CTAAATTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.08, C:0.03, G:0.00, T:0.89
Consensus pattern (18 bp):
TTATTTTTTTTTCTTTTT
Found at i:24580601 original size:27 final size:27
Alignment explanation
Indices: 24580571--24580662 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
24580561 ATTACCAAAG
* * * *
24580571 TACCCTCAATTTATAGAATCACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
24580598 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
24580625 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
24580652 TACCCTTGATT
1 TACCCTCGATT
24580663 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:24580724 original size:27 final size:27
Alignment explanation
Indices: 24580694--24580893 Score: 181
Period size: 27 Copynumber: 7.4 Consensus size: 27
24580684 TTTGGGGTAG
* *
24580694 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
24580721 AATTACCAAAACACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
** * *
24580748 AATTACTGAAATA-CCCTCAACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
** * **
24580775 AATTACCAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
24580802 AATTACCAAAATACCCCTGATTTGTTA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
24580829 AATTACCAAAATA-CCCTCAGTTTGCAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
**
24580856 AATTACTGAAATA-CCCTCGATTTGTAAA
1 AATTACCAAAATACCCCT-GATTTGT-AA
24580884 AATTACCAAA
1 AATTACCAAA
24580894 GTATCCTGGA
Statistics
Matches: 136, Mismatches: 32, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
26 9 0.07
27 114 0.84
28 13 0.10
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:24580737 original size:54 final size:53
Alignment explanation
Indices: 24580661--24580844 Score: 160
Period size: 54 Copynumber: 3.4 Consensus size: 53
24580651 TTACCCTTGA
** *
24580661 TTGTGAAATTACTGAAATACCCCTTTGGGGTAGAATTACCAAAATACCCCTAAT
1 TTGTGAAATTACCAAAATACCCCTTTGGTGTA-AATTACCAAAATACCCCTAAT
* * ** *
24580715 TTGTGAAATTACCAAAACACCCCTGATTTGTG-AAATTACTGAAATA-CCCTCAAC
1 TTGTGAAATTACCAAAATACCCCT--TTGGTGTAAATTACCAAAATACCCCT-AAT
* * * *
24580769 TTGTAAAATTACCAAAATA--CCATTGGTTTACAAAATTACCAAAATACCCCTGAT
1 TTGTGAAATTACCAAAATACCCCTTTGGTGT---AAATTACCAAAATACCCCTAAT
*
24580823 TTGTTAAATTACCAAAATACCC
1 TTGTGAAATTACCAAAATACCC
24580845 TCAGTTTGCA
Statistics
Matches: 102, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
50 4 0.04
52 2 0.02
53 4 0.04
54 82 0.80
55 5 0.05
56 5 0.05
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCCTTTGGTGTAAATTACCAAAATACCCCTAAT
Found at i:24580779 original size:81 final size:80
Alignment explanation
Indices: 24580653--24580893 Score: 238
Period size: 81 Copynumber: 3.0 Consensus size: 80
24580643 TTACTATTTT
* * *
24580653 ACCCTTGA-TTGTGAAATTACTGAAATACCC-C-TTTGGGGTAGAATTACCAAAATACCCCTAAT
1 ACCCCTGATTTGTGAAATTACTGAAATACCCTCATTT---GTAAAATTACCAAAATACCCCTGAT
*
24580715 TTGTGAAATTACCAAAAC
63 TTGTAAAATTACCAAAAC
* ** *
24580733 ACCCCTGATTTGTGAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCATTGGTTT
1 ACCCCTGATTTGTGAAATTACTGAAATACCCTC-ATTTGTAAAATTACCAAAATACCCCTGATTT
** *
24580798 ACAAAATTACCAAAAT
65 GTAAAATTACCAAAAC
* ** * **
24580814 ACCCCTGATTTGTTAAATTACCAAAATACCCTCAGTTTGCAAAATTACTGAAATA-CCCTCGATT
1 ACCCCTGATTTGTGAAATTACTGAAATACCCTCA-TTTGTAAAATTACCAAAATACCCCT-GATT
24580878 TGTAAAAATTACCAAA
64 TGT-AAAATTACCAAA
24580894 GTATCCTGGA
Statistics
Matches: 131, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
80 10 0.08
81 106 0.81
82 13 0.10
84 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCCTGATTTGTGAAATTACTGAAATACCCTCATTTGTAAAATTACCAAAATACCCCTGATTTG
TAAAATTACCAAAAC
Found at i:24580952 original size:27 final size:28
Alignment explanation
Indices: 24580747--24580953 Score: 110
Period size: 27 Copynumber: 7.6 Consensus size: 28
24580737 CTGATTTGTG
* * *
24580747 AAATTACTGAAATACCCTCAACTTGT--A
1 AAATTACCGAAATACCCTCGAGTT-TACA
* * *
24580774 AAATTACCAAAATACCATTG-GTTTACA
1 AAATTACCGAAATACCCTCGAGTTTACA
* ***
24580801 AAATTACCAAAATACCC-CTGA-TTTGTT
1 AAATTACCGAAATACCCTC-GAGTTTACA
* *
24580828 AAATTACCAAAATACCCTC-AGTTTGCA
1 AAATTACCGAAATACCCTCGAGTTTACA
* *
24580855 AAATTACTGAAATACCCTCGATTTGTA-A
1 AAATTACCGAAATACCCTCGAGTT-TACA
* *
24580883 AAATTACC-AAAGTATCCTGGA-TTTACA
1 AAATTACCGAAA-TACCCTCGAGTTTACA
* ***
24580910 GAATTACCGTTTTACCCTCGA-TTTACA
1 AAATTACCGAAATACCCTCGAGTTTACA
**
24580937 AAATTATTGAAATACCC
1 AAATTACCGAAATACCC
24580954 CTGTAGGGTA
Statistics
Matches: 137, Mismatches: 32, Indels: 22
0.72 0.17 0.12
Matches are distributed among these distances:
25 1 0.01
26 5 0.04
27 111 0.81
28 19 0.14
29 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (28 bp):
AAATTACCGAAATACCCTCGAGTTTACA
Found at i:24580968 original size:27 final size:27
Alignment explanation
Indices: 24580945--24581025 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
24580935 CAAAATTATT
24580945 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
24580972 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
24580999 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
24581026 ATCTTGCCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:24582123 original size:9 final size:9
Alignment explanation
Indices: 24582109--24582182 Score: 69
Period size: 9 Copynumber: 8.1 Consensus size: 9
24582099 AGCAGAAATA
24582109 TTTATTTTT
1 TTTATTTTT
24582118 TTTATTTTT
1 TTTATTTTT
* *
24582127 TCTCTTTTT
1 TTTATTTTT
* *
24582136 TTT-CTTAT
1 TTTATTTTT
24582144 TTTATTTTTT
1 TTTA-TTTTT
24582154 TTTATTTTT
1 TTTATTTTT
*
24582163 TTCTCTTTTT
1 TT-TATTTTT
*
24582173 TTTCTTTTT
1 TTTATTTTT
24582182 T
1 T
24582183 CTAAATTGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
8 6 0.11
9 33 0.61
10 15 0.28
ACGTcount: A:0.07, C:0.08, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTATTTTT
Found at i:24582136 original size:18 final size:18
Alignment explanation
Indices: 24582113--24582184 Score: 92
Period size: 18 Copynumber: 3.9 Consensus size: 18
24582103 GAAATATTTA
24582113 TTTTTTTTATTTTTTCTC
1 TTTTTTTTATTTTTTCTC
* *
24582131 TTTTTTTTCTTATTTTAT-
1 TTTTTTTTATT-TTTTCTC
24582149 TTTTTTTTATTTTTTTCTC
1 TTTTTTTTA-TTTTTTCTC
*
24582168 TTTTTTTTCTTTTTTCT
1 TTTTTTTTATTTTTTCT
24582185 AAATTGGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
18 31 0.67
19 15 0.33
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTTTATTTTTTCTC
Found at i:24582153 original size:26 final size:26
Alignment explanation
Indices: 24582117--24582185 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
24582107 TATTTATTTT
24582117 TTTTATTTTTTCTCT-TTTTTTTCTTA
1 TTTTATTTTTT-TCTATTTTTTTCTTA
* *
24582143 TTTTATTTTTTTTTATTTTTTTCTCTT
1 TTTTATTTTTTTCTATTTTTTTCT-TA
*
24582170 TTTTTTCTTTTTTCTA
1 TTTTAT-TTTTTTCTA
24582186 AATTGGGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.56
27 6 0.17
28 8 0.22
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (26 bp):
TTTTATTTTTTTCTATTTTTTTCTTA
Found at i:24582163 original size:37 final size:34
Alignment explanation
Indices: 24582109--24582182 Score: 121
Period size: 37 Copynumber: 2.1 Consensus size: 34
24582099 AGCAGAAATA
24582109 TTTATTTTTTTTATTTTTTCTCTTTTTTTTCTTAT
1 TTTATTTTTTTTATTTTTTCTCTTTTTTTTCTT-T
24582144 TTTATTTTTTTTTATTTTTTTCTCTTTTTTTTCTTT
1 TTTA-TTTTTTTTA-TTTTTTCTCTTTTTTTTCTTT
24582180 TTT
1 TTT
24582183 CTAAATTGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
35 4 0.11
36 13 0.35
37 20 0.54
ACGTcount: A:0.07, C:0.08, G:0.00, T:0.85
Consensus pattern (34 bp):
TTTATTTTTTTTATTTTTTCTCTTTTTTTTCTTT
Found at i:24582198 original size:1 final size:1
Alignment explanation
Indices: 24582113--24582182 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
24582103 GAAATATTTA
* * * * * * * * * *
24582113 TTTTTTTTATTTTTTCTCTTTTTTTTCTTATTTTATTTTTTTTTATTTTTTTCTCTTTTTTTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24582178 TTTTT
1 TTTTT
24582183 CTAAATTGGG
Statistics
Matches: 49, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:24583686 original size:27 final size:27
Alignment explanation
Indices: 24583656--24583739 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
24583646 AGTACCTTCA
* * *
24583656 ATTTATAGAATCACTGTTTTACCCTTG
1 ATTTACAGAATCACTATTTTACCCTCG
*
24583683 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATCACTATTTTACCCTCG
* * *
24583710 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAGAATCACTATTTTACCCTCG
24583737 ATT
1 ATT
24583740 GTGAAATTAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATCACTATTTTACCCTCG
Found at i:24583918 original size:81 final size:81
Alignment explanation
Indices: 24583702--24583997 Score: 241
Period size: 81 Copynumber: 3.7 Consensus size: 81
24583692 ATTACTATTT
*** * *
24583702 TACCCTC-GATTTACAAAATTACCATTTTA-CCCTCGA-TTGTGAAATTACTAAAATACCCCTAT
1 TACCCTCAG-TTTACAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCTA-
* * *
24583764 A-GTGTAGAATTACCAAAA
63 ACTTGTAAAATTACAAAAA
* ** * *** *
24583782 TACCC-CTA-ATTAGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAATA-CCCTCG
1 TACCCTC-AGTTTA-CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-A
*
24583844 ACTTGTAAAATTACCAAAA
63 ACTTGTAAAATTACAAAAA
** *
24583863 TACCCTTGGTTTACAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAAT
1 TACCCTCAGTTTACAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCTAAC
*
24583927 TTGTGAAATTACAAAAA
65 TTGTAAAATTACAAAAA
**
24583944 TACCCTCAGTTTACAAAATTACTGAAATA-CCCTCGATTTGTAAAACTTACCAAA
1 TACCCTCAGTTTACAAAATTACCAAAATACCCCT-GATTTGTAAAA-TTACCAAA
24583998 GTATCCTGGA
Statistics
Matches: 174, Mismatches: 28, Indels: 26
0.76 0.12 0.11
Matches are distributed among these distances:
79 4 0.02
80 28 0.16
81 126 0.72
82 16 0.09
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
TACCCTCAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAACT
TGTAAAATTACAAAAA
Found at i:24583955 original size:54 final size:54
Alignment explanation
Indices: 24583729--24583997 Score: 219
Period size: 54 Copynumber: 5.0 Consensus size: 54
24583719 ATTACCATTT
* * * *
24583729 TACCCTC-GATTGTGAAATTACTAAAATACCCCT-A-TAGTGTAGAATTACCAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG-A-AATTACCAAAA
* * * ***
24583782 TACCC-CTAATTAGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAA
1 TACCCTC-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
* * * ***
24583836 TACCCTC-GACTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAG-TTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
* *
24583890 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACAAAAA
1 TACCCTC-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
** ** *
24583944 TACCCTCAGTTTACAAAATTACTGAAATA-CCCTCGATTTGTAAAACTTACCAAA
1 TACCCTCAGTTTGTAAAATTACCAAAATACCCCT-GATTTGTGAAA-TTACCAAA
24583998 GTATCCTGGA
Statistics
Matches: 170, Mismatches: 35, Indels: 20
0.76 0.16 0.09
Matches are distributed among these distances:
52 1 0.01
53 10 0.06
54 143 0.84
55 12 0.07
56 4 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
TACCCTCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
Found at i:24583988 original size:27 final size:26
Alignment explanation
Indices: 24583702--24583997 Score: 191
Period size: 27 Copynumber: 11.0 Consensus size: 26
24583692 ATTACTATTT
** ***
24583702 TACCCTCGATTTACAAAATTACCATTT
1 TACCC-CGATTTGTAAAATTACCAAAA
* *
24583729 TACCCTCGA-TTGTGAAATTACTAAAA
1 TACCC-CGATTTGTAAAATTACCAAAA
* * *
24583755 TACCCCTATAGTGTAGAATTACCAAAA
1 TACCCCGAT-TTGTAAAATTACCAAAA
* * *
24583782 TACCCCTAATTAGTGAAATTACCAAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
* ***
24583809 TACCCCTGATTTGTGAAATTATTGAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
*
24583836 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCC-CGATTTGTAAAATTACCAAAA
* * **
24583863 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCC-CGATTTGTAAAATTACCAAAA
*
24583890 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCGA-TTTGTAAAATTACCAAAA
* * *
24583917 TACCCCTAATTTGTGAAATTACAAAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
** **
24583944 TACCCTC-AGTTTACAAAATTACTGAAA
1 TACCC-CGA-TTTGTAAAATTACCAAAA
24583971 TACCCTCGATTTGTAAAACTTACCAAA
1 TACCC-CGATTTGTAAAA-TTACCAAA
24583998 GTATCCTGGA
Statistics
Matches: 210, Mismatches: 49, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
25 2 0.01
26 16 0.08
27 180 0.86
28 12 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (26 bp):
TACCCCGATTTGTAAAATTACCAAAA
Found at i:24584056 original size:27 final size:27
Alignment explanation
Indices: 24583797--24584058 Score: 129
Period size: 27 Copynumber: 9.7 Consensus size: 27
24583787 CTAATTAGTG
* ***
24583797 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTACA
** * **
24583824 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTACA
* * *
24583851 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCGAAATACCCTCGATTTACA
* * **
24583878 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTACA
* * ***
24583905 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCGAAATACCCTC-GATTTACA
**
24583932 AAATTACAAAAATACCCTC-AGTTTACA
1 AAATTACCGAAATACCCTCGA-TTTACA
* **
24583959 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTACA
* *
24583986 AAACTTACC-AAAGTATCCTGGATTTACA
1 AAA-TTACCGAAA-TACCCTCGATTTACA
* ***
24584014 GAATTACCGTTCTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGATTTACA
**
24584041 AAATTATTGAAATACCCT
1 AAATTACCGAAATACCCT
24584059 TGTAGGGTAG
Statistics
Matches: 181, Mismatches: 45, Indels: 18
0.74 0.18 0.07
Matches are distributed among these distances:
26 1 0.01
27 159 0.88
28 21 0.12
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTACA
Found at i:24584080 original size:27 final size:27
Alignment explanation
Indices: 24584049--24584206 Score: 194
Period size: 27 Copynumber: 5.9 Consensus size: 27
24584039 CAAAATTATT
*
24584049 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * * *
24584076 AAAATGCCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
*
24584103 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* *
24584130 GAAATACCCTTGCAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
24584157 GAAATACCCCTGTAGGGTA-AAATTACC
1 GAAATACCCCTGTAGGGTAGAAA-TACC
* * *
24584184 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
24584207 TACCATTTTA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.04
27 110 0.96
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATACC
Found at i:24584127 original size:81 final size:81
Alignment explanation
Indices: 24584040--24584210 Score: 243
Period size: 81 Copynumber: 2.1 Consensus size: 81
24584030 CTCGATTTAC
** * * * *
24584040 AAAATTATTGAAATACCCTTGTAGGGTAGAAATACCAAAATGCCCCTGTAGGGTAGAATTACTGA
1 AAAATTACCGAAATACCCTTGCAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
24584105 AATACCCCTGTAGGGT
66 AATACCCCTGTAGGGT
* *
24584121 AGAATTACCGAAATACCCTTGCAGGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACCGA
1 AAAATTACCGAAATACCCTTGCAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
* * *
24584186 GATACCCTTGTGGGGT
66 AATACCCCTGTAGGGT
24584202 AAAATTACC
1 AAAATTACC
24584211 ATTTTATCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTTGCAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
AATACCCCTGTAGGGT
Found at i:24586025 original size:27 final size:27
Alignment explanation
Indices: 24585995--24586082 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
24585985 ATTACCAAAG
* *
24585995 TACCCTCAATTTATAAAATCACTGTTT
1 TACCCTCAATTTACAAAATTACTGTTT
** *
24586022 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAAAATTACTGTTT
* *
24586049 TACCATCAATTTACAAAATTACCGTTT
1 TACCCTCAATTTACAAAATTACTGTTT
24586076 TACCCTC
1 TACCCTC
24586083 GATTGTGAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACTGTTT
Found at i:24586148 original size:27 final size:26
Alignment explanation
Indices: 24586118--24586317 Score: 193
Period size: 27 Copynumber: 7.4 Consensus size: 26
24586108 TATAGGGTAG
*
24586118 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATA-CCCTGATTTGTAA
* *
24586145 AATTACTAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCT-GATTTGTAA
* * **
24586172 AATTACTAAAATACCCTTAGTTTACAA
1 AATTACCAAAATACCCTGA-TTTGTAA
* *
24586199 AATTACCAAAACACCCCTGGTTTGTAA
1 AATTACCAAAATA-CCCTGATTTGTAA
* *
24586226 AATTACCAAAAGACACCTGATTTGTGA
1 AATTACCAAAATAC-CCTGATTTGTAA
* * *
24586253 AATTACCGAAATACCCTTAGTTTGCAA
1 AATTACCAAAATACCCTGA-TTTGTAA
*
24586280 AATTACTAAAATACCCTCGATTTGTAAA
1 AATTACCAAAATACCCT-GATTTGT-AA
24586308 AATTACCAAA
1 AATTACCAAA
24586318 GTATCTTGAA
Statistics
Matches: 140, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
26 10 0.07
27 114 0.81
28 16 0.11
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTGATTTGTAA
Found at i:24586203 original size:81 final size:79
Alignment explanation
Indices: 24586076--24586317 Score: 274
Period size: 81 Copynumber: 3.0 Consensus size: 79
24586066 ATTACCGTTT
** *
24586076 TACCCTCGATTGTGAAATTACTGAAATACCCCTATAGGGT-AGAATTACCAAAATACCCCTGATT
1 TACCCTCGATTGTGAAATTACTGAAATA-CCCT-TAGTTTCAAAATTACCAAAATACCCCTGATT
* *
24586140 TGTGAAATTACTAAAA
64 TGTAAAATTACCAAAA
* * * *
24586156 TACCCTCGACTTGTAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAACACCCCTGGTT
1 TACCCTCGA-TTGTGAAATTACTGAAATACCCTTAGTTT-CAAAATTACCAAAATACCCCTGATT
24586221 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* * *
24586237 GACACCT-GATTTGTGAAATTACCGAAATACCCTTAGTTTGCAAAATTACTAAAATA-CCCTCGA
1 TAC-CCTCGA-TTGTGAAATTACTGAAATACCCTTAGTTT-CAAAATTACCAAAATACCCCT-GA
24586300 TTTGTAAAAATTACCAAA
62 TTTGT-AAAATTACCAAA
24586318 GTATCTTGAA
Statistics
Matches: 138, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
79 4 0.03
80 17 0.12
81 102 0.74
82 15 0.11
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (79 bp):
TACCCTCGATTGTGAAATTACTGAAATACCCTTAGTTTCAAAATTACCAAAATACCCCTGATTTG
TAAAATTACCAAAA
Found at i:24586392 original size:27 final size:27
Alignment explanation
Indices: 24586369--24586449 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
24586359 CAAAATTATT
24586369 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
24586396 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
24586423 GAGATACCCTTGT-GGAGTAAAATTACC
1 GAAATACCCTTGTAGG-GTAGAATTACC
24586450 ATTTTACCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.04
27 45 0.96
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:24587642 original size:11 final size:11
Alignment explanation
Indices: 24587626--24587654 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
24587616 ATTGTTATTA
24587626 TTTTTTTCTCT
1 TTTTTTTCTCT
24587637 TTTTTTTCTCT
1 TTTTTTTCTCT
24587648 TTTTTTT
1 TTTTTTT
24587655 AAATTGGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTCTCT
Found at i:24589113 original size:27 final size:27
Alignment explanation
Indices: 24589083--24589151 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
24589073 ATTACCAAAG
* * *
24589083 TACCCTCAATTTATAGAATCAATGTTT
1 TACCCTCGATTTACAGAATCAATATTT
* * *
24589110 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATCAATATTT
24589137 TACCCTCGATTTACA
1 TACCCTCGATTTACA
24589152 AAATTACCGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCAATATTT
Found at i:24589156 original size:27 final size:27
Alignment explanation
Indices: 24589107--24589174 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
24589097 AGAATCAATG
* * *
24589107 TTTTACCCTTGATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAAAATTACCA
*
24589134 TTTTACCCTCGATTTACAAAATTACCG
1 TTTTACCCTCGATTTACAAAATTACCA
*
24589161 TTTTACCTTCGATT
1 TTTTACCCTCGATT
24589175 GTGAAATTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACCA
Found at i:24589235 original size:27 final size:27
Alignment explanation
Indices: 24589205--24589404 Score: 183
Period size: 27 Copynumber: 7.4 Consensus size: 27
24589195 TATAGGGTAG
*
24589205 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
** *
24589232 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
** * **
24589259 AATTACCAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
24589286 AATTACCAAAATACCCCT-AGTTCGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
*
24589313 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
24589340 AATTACCTAAATA-CCCTCAGTTTGCAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
**
24589367 AATTACTGAAATA-CCCTCGATTTGTAAA
1 AATTACCAAAATACCCCT-GATTTGT-AA
24589395 AATTACCAAA
1 AATTACCAAA
24589405 GTATCCTGGA
Statistics
Matches: 136, Mismatches: 30, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
26 9 0.07
27 113 0.83
28 14 0.10
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:24589300 original size:81 final size:81
Alignment explanation
Indices: 24589205--24589404 Score: 233
Period size: 81 Copynumber: 2.5 Consensus size: 81
24589195 TATAGGGTAG
**
24589205 AATTACCAAAATACCCCTAATTTGTAAAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GACTTGTAAAATTACCAAA
**
24589269 ATACCATTGGTTTACAA
65 ATACCATCAGTTTACAA
* * * * *
24589286 AATTACCAAAATACCCCTAGTTCGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCTAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAAAA
* *
24589351 TACCCTCAGTTTGCAA
66 TACCATCAGTTTACAA
** *
24589367 AATTACTGAAATA-CCCTCGATTTGTAAAAATTACCAAA
1 AATTACCAAAATACCCCT-AATTTGT-AAAATTACCAAA
24589405 GTATCCTGGA
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 4 0.04
81 80 0.80
82 16 0.16
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAAAA
TACCATCAGTTTACAA
Found at i:24589343 original size:54 final size:52
Alignment explanation
Indices: 24589173--24589404 Score: 198
Period size: 54 Copynumber: 4.3 Consensus size: 52
24589163 TTACCTTCGA
* * * * *
24589173 TTGTGAAATTACTAAAATACCCTA-TAGGGTAGAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCTAGT--TGTAAAATTACCAAAATACCCCTGAT
** * ** *
24589226 TTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCATTGGT
1 TTGTAAAATTACCAAAATACCCT--AGTTGTAAAATTACCAAAATACCCCTGAT
**
24589280 TTACAAAATTACCAAAATACCCCTAGTTCGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATA-CCCTAGTT-GTAAAATTACCAAAATACCCCTGAT
* * * **
24589334 TTGTGAAATTACCTAAATACCCTCAGTTTGCAAAATTACTGAAATA-CCCTCGAT
1 TTGTAAAATTACCAAAATACCCT-AG-TTGTAAAATTACCAAAATACCCCT-GAT
24589388 TTGTAAAAATTACCAAA
1 TTGT-AAAATTACCAAA
24589405 GTATCCTGGA
Statistics
Matches: 145, Mismatches: 25, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
53 32 0.22
54 95 0.66
55 17 0.12
56 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (52 bp):
TTGTAAAATTACCAAAATACCCTAGTTGTAAAATTACCAAAATACCCCTGAT
Found at i:24589479 original size:27 final size:27
Alignment explanation
Indices: 24589456--24589616 Score: 234
Period size: 27 Copynumber: 6.0 Consensus size: 27
24589446 CAAAATTATT
*
24589456 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
24589483 AAAATACCC-TGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
24589509 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
24589536 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
24589563 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
24589590 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
24589617 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 23 0.19
27 97 0.81
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:24592305 original size:27 final size:27
Alignment explanation
Indices: 24592275--24592358 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
24592265 AGTACCTTCA
* * *
24592275 ATTTATAGAATCACTGTTTTACCCTTG
1 ATTTACAGAATCACTATTTTACCCTCG
*
24592302 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATCACTATTTTACCCTCG
* * *
24592329 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAGAATCACTATTTTACCCTCG
24592356 ATT
1 ATT
24592359 GTGAAATTAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATCACTATTTTACCCTCG
Found at i:24592380 original size:27 final size:26
Alignment explanation
Indices: 24592350--24592594 Score: 199
Period size: 27 Copynumber: 9.1 Consensus size: 26
24592340 TACCATTTTA
*
24592350 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
24592377 CCCT-ATAGGGTAGAATTACCAAAATAT
1 CCCTGATTGTG-A-AATTACCAAAATAC
24592404 CCCTGATTAGTGAAATTACCAAAATAC
1 CCCTGATT-GTGAAATTACCAAAATAC
***
24592431 CCCTGATTTGTGAAATTATTGAAATA-
1 CCCTGA-TTGTGAAATTACCAAAATAC
*
24592457 CCATCGACTTGTGAAATTACCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
* * *
24592485 CCTTGGTT-TACAAAATTACCAAAATAC
1 CCCTGATTGT--GAAATTACCAAAATAC
* *
24592512 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
24592539 CCCTGATTTGTGAAATTACCAAAATAC
1 CCCTGA-TTGTGAAATTACCAAAATAC
* * ** *
24592566 CCTCAGTTTGCAAAATTACTAAAATAC
1 CC-CTGATTGTGAAATTACCAAAATAC
24592593 CC
1 CC
24592595 TCAATTTGTA
Statistics
Matches: 178, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
25 5 0.03
26 7 0.04
27 150 0.84
28 13 0.07
29 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:24592448 original size:54 final size:53
Alignment explanation
Indices: 24592348--24592616 Score: 219
Period size: 54 Copynumber: 5.0 Consensus size: 53
24592338 ATTACCATTT
* * *
24592348 TACCCTCGA-TTGTGAAATTACTAAAATACCCCT-A-TAGGGTAGAATTACCAAAA
1 TACCCT-GAGTTGTGAAATTACCAAAATACCCCTGATTTGTG-A-AATTACCAAAA
***
24592401 TATCCCTGA-TTAGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAA
1 TA-CCCTGAGTT-GTGAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
* * * * ***
24592455 TACCATCGACTTGTGAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCT-GAGTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
*
24592509 TACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
1 TA-CCCTGAG-TTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
* * * *
24592563 TACCCTCAGTT-TGCAAAATTACTAAAATA-CCCTCAATTTGTAAAAATTACCAAA
1 TACCCTGAGTTGTG--AAATTACCAAAATACCCCT-GATTTGT-GAAATTACCAAA
24592617 GTATCCTGGA
Statistics
Matches: 176, Mismatches: 27, Indels: 24
0.78 0.12 0.11
Matches are distributed among these distances:
52 1 0.01
53 20 0.11
54 134 0.76
55 18 0.10
56 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
TACCCTGAGTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAA
Found at i:24592475 original size:81 final size:80
Alignment explanation
Indices: 24592321--24592616 Score: 228
Period size: 81 Copynumber: 3.6 Consensus size: 80
24592311 ATTACTATTT
* *** * * * *
24592321 TACCCTCGATTTACAAAATTACCATTTTA-CCCTCGATTGTGAAATTACTAAAATACCCCT-A-T
1 TACCCTGGA-TTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGACT
* *
24592383 AGGGTAGAATTACCAAAA
65 TGTG-A-AATTACCAAAA
** * *** *
24592401 TATCCCT-GATTAGTGAAATTACCAAAATACCCCT-GATTTGTGAAATTATTGAAATA-CCATCG
1 TA-CCCTGGATTA-CAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCT-G
24592463 ACTTGTGAAATTACCAAAA
62 ACTTGTGAAATTACCAAAA
* *
24592482 TACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATT
1 TACCC-TGGATTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGACT
24592547 TGTGAAATTACCAAAA
65 TGTGAAATTACCAAAA
* * * * *
24592563 TACCCTCAGTTTGCAAAATTACTAAAATA-CCCTCAATTTGTAAAAATTACCAAA
1 TACCCT-GGATTACAAAATTACCAAAATACCCCT-AGTTTGT-AAAATTACCAAA
24592617 GTATCCTGGA
Statistics
Matches: 178, Mismatches: 24, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
79 3 0.02
80 27 0.15
81 123 0.69
82 22 0.12
83 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCTGGATTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGACTT
GTGAAATTACCAAAA
Found at i:24592595 original size:27 final size:27
Alignment explanation
Indices: 24592470--24592616 Score: 163
Period size: 27 Copynumber: 5.4 Consensus size: 27
24592460 TCGACTTGTG
** *
24592470 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCAGTTTGCA
*
24592497 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-AGTTTGCA
* **
24592524 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTCAG-TTTGCA
24592551 AAATTACCAAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTCAGTTTGCA
* * *
24592578 AAATTACTAAAATACCCTCAATTTGTAA
1 AAATTACCAAAATACCCTCAGTTTG-CA
24592606 AAATTACCAAA
1 AAATTACCAAA
24592617 GTATCCTGGA
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 89 0.86
28 13 0.13
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAGTTTGCA
Found at i:24592649 original size:82 final size:80
Alignment explanation
Indices: 24592390--24592706 Score: 232
Period size: 81 Copynumber: 3.9 Consensus size: 80
24592380 TATAGGGTAG
* ** * * * ***
24592390 AATTACCAAAATATCCCT-GATTAGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAA
1 AATTACCAAAATA-CCCTCGTTTA-CAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAA
* * *
24592454 ATA-CCATCGACTTGTGA
64 ATACCCCT-GATTTATGA
* * *
24592471 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCC-TCGTTTACAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAA
*
24592536 TACCCCTGATTTGTGA
65 TACCCCTGATTTATGA
*
24592552 AATTACCAAAATACCCTCAGTTTGCAAAATTACTAAAATA-CCCTCAATTTGTAAAAATTACCAA
1 AATTACCAAAATACCCTC-GTTTACAAAATTACTAAAATACCCCT-AATTTGT-AAAATTACCAA
* *
24592616 AGTA-TCCTGGATTTAT-A
63 AATACCCCT-GATTTATGA
**** * * * ** *
24592633 GAATTACCGTTCTACCCTCGATTTACAAAATTATTGAAATACCCCT-GTAGGGTAGAATTACCAA
1 -AATTACCAAAATACCCTCG-TTTACAAAATTACTAAAATACCCCTAAT-TTGTAAAATTACCAA
24592697 AATACCCCTG
63 AATACCCCTG
24592707 TAGGGTAGAA
Statistics
Matches: 193, Mismatches: 31, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
80 8 0.04
81 118 0.61
82 63 0.33
83 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCCTCGTTTACAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAAT
ACCCCTGATTTATGA
Found at i:24592691 original size:27 final size:27
Alignment explanation
Indices: 24592661--24592811 Score: 187
Period size: 27 Copynumber: 5.6 Consensus size: 27
24592651 CGATTTACAA
*
24592661 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
24592688 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24592715 AATTACTGAAATACCCCTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24592742 AATTACTGAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24592769 AAATA-TCGAAATACCCCTGTAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
24592796 AATTACCGAGATACCC
1 AATTACTGAAATACCC
24592812 TTATGGGGTA
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 104 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:24592813 original size:54 final size:54
Alignment explanation
Indices: 24592667--24592813 Score: 206
Period size: 54 Copynumber: 2.7 Consensus size: 54
24592657 ACAAAATTAT
* * * *
24592667 TGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATAC
* * *
24592721 TGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCTTGTATGGTAGAAATA-
1 TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATAC
*
24592774 TCGAAATACCCCTGTAGGGTAAAATTACCGAGATACCCTT
1 T-GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTT
24592814 ATGGGGTAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 81 0.99
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (54 bp):
TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATAC
Found at i:24592820 original size:27 final size:27
Alignment explanation
Indices: 24592659--24592829 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
24592649 CTCGATTTAC
** *
24592659 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
24592686 AGAATTACCAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
24592713 AGAATTACTGAAATACCCCTGTAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
24592740 AAAATTACTGAAATACCCTTGTATGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
24592767 AGAAA-TATCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* * *
24592794 AAAATTACCGAGATACCCTTATGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
24592821 AAAATTACC
1 AAAATTACC
24592830 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.02
27 117 0.95
28 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:24592822 original size:81 final size:81
Alignment explanation
Indices: 24592659--24592828 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
24592649 CTCGATTTAC
* * * *
24592659 AAAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACTGA
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
*
24592724 AATACCCCTGTAAGGT
66 AATACCCCTATAAGGT
* * * *
24592740 AAAATTACTGAAATACCCTTGTATGGTAGAAATATCGAAATACCCCTGTAGGGTAAAATTACCGA
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
* * **
24592805 GATACCCTTATGGGGT
66 AATACCCCTATAAGGT
24592821 AAAATTAC
1 AAAATTAC
24592829 CATTTTGCCC
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (81 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACCGA
AATACCCCTATAAGGT
Found at i:24601227 original size:39 final size:39
Alignment explanation
Indices: 24601164--24601474 Score: 469
Period size: 39 Copynumber: 8.0 Consensus size: 39
24601154 AAGACACTGA
*
24601164 AAATGTATTCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
24601203 AAATATATCCGGGCTAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
24601242 AAATATATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
24601281 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
24601320 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
24601359 AAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
24601398 AAATGTATCCGGGCCAAAGTCCCGTAGGCTTCTTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
24601437 AAATGTATCCGGGTTAAAGTCCTGTAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
24601475 ATAATATAAT
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 251 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:24604720 original size:27 final size:26
Alignment explanation
Indices: 24604664--24604720 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
24604654 CAACCTTAAC
* * *
24604664 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
24604690 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
24604717 CCTA
1 CCTA
24604721 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:24609813 original size:40 final size:40
Alignment explanation
Indices: 24609629--24609813 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
24609619 GCTACTCATT
* *
24609629 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
24609669 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
24609709 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGCAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
24609748 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCAATTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-AACTCGCA
24609789 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24609814 CATCATTCGA
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 76 0.63
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:24618733 original size:94 final size:93
Alignment explanation
Indices: 24618552--24619060 Score: 816
Period size: 93 Copynumber: 5.5 Consensus size: 93
24618542 ACTCGCCCCG
*
24618552 TCACATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCTTATCACATATATACA-TTTCA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCA
*
24618615 CA-TCATCACATTGGCCATTAGGCCTTA
66 CATTCATCACATCGGCCATTAGGCCTTA
*
24618642 TTACATATATACAC-TTCACATTCATCACATCGGCCATTAGGCATTATCACATTATATACACTTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC-TTATCACA-TATATACACTTT
*
24618706 CACATTCATCACATCGGCTATTAGGCCTTA
64 CACATTCATCACATCGGCCATTAGGCCTTA
* * *
24618736 TCACATA-ATTACACTTTCACATTCATCACATCGTCCATTAGGCCTATAACATATATACACTTTC
1 TCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTC
24618800 ACATTCATCACATCGGCCATTAGGCCTTA
65 ACATTCATCACATCGGCCATTAGGCCTTA
*
24618829 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTC
24618894 ACATTCATC-CATCGGCCATTAGG-CTTA
65 ACATTCATCACATCGGCCATTAGGCCTTA
*
24618921 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTC
*
24618986 ACATTCATCCCATCGGCCATTAGGCCTTA
65 ACATTCATCACATCGGCCATTAGGCCTTA
* *
24619015 TTACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTA
24619061 CTATCATTTC
Statistics
Matches: 391, Mismatches: 17, Indels: 19
0.92 0.04 0.04
Matches are distributed among these distances:
89 13 0.03
90 26 0.07
91 8 0.02
92 84 0.21
93 120 0.31
94 113 0.29
95 27 0.07
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (93 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTA
Found at i:24618749 original size:47 final size:47
Alignment explanation
Indices: 24618552--24619060 Score: 831
Period size: 47 Copynumber: 11.0 Consensus size: 47
24618542 ACTCGCCCCG
*
24618552 TCACATATATATACTTTCACATTCATCA-ATCGGCCATTAGG-CTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618597 TCACATATATACA-TTTCACA-TCATCACATTGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
24618642 TTACATATATACAC-TTCACATTCATCACATCGGCCATTAGGCATTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618688 TCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618736 TCACATA-ATTACACTTTCACATTCATCACATCGTCCATTAGGCC-TA
1 TCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618782 TAACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24618829 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618876 TTACATATATACACTTTCACATTCATC-CATCGGCCATTAGG-CTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618921 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24618968 TCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24619015 TTACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24619061 CTATCATTTC
Statistics
Matches: 433, Mismatches: 20, Indels: 21
0.91 0.04 0.04
Matches are distributed among these distances:
43 6 0.01
44 19 0.04
45 64 0.15
46 103 0.24
47 206 0.48
48 35 0.08
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:24618963 original size:232 final size:233
Alignment explanation
Indices: 24618554--24619060 Score: 877
Period size: 232 Copynumber: 2.2 Consensus size: 233
24618544 TCGCCCCGTC
*
24618554 ACATATATATACTTTCACATTCATCA-ATCGGCCATTAGG-CTTATCACATATATACATTTCACA
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATTTCACA
*
24618617 TCATCACATTGGCCATTAGGCCTTATTACATATATACACTTCACATTCATCACATCGGCCATTAG
66 TCATCACATCGGCCATTAGGCCTTATTACATATATACACTTCACATTCATCACATCGGCCATTAG
24618682 GCATTATCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA-ATT
131 GCATTATCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATA-T
*
24618746 ACACTTTCACATTCATCACATCGTCCATTAGGCC-TATA
195 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATA
24618784 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-TTTCAC
24618849 ATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATC-CATCGGCCAT
65 A-TCATCACATCGGCCATTAGGCCTTATTACATATATACAC-TTCACATTCATCACATCGGCCAT
24618913 TAGGC-TTATCACA-TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
128 TAGGCATTATCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
* *
24618976 ATACACTTTCACATTCATCCCATCGGCCATTAGGCCTTATT
193 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATA
24619017 ACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTA
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24619061 CTATCATTTC
Statistics
Matches: 265, Mismatches: 5, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
230 25 0.09
231 13 0.05
232 105 0.40
233 57 0.22
234 53 0.20
235 12 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (233 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATTTCACA
TCATCACATCGGCCATTAGGCCTTATTACATATATACACTTCACATTCATCACATCGGCCATTAG
GCATTATCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATA
Found at i:24618974 original size:139 final size:140
Alignment explanation
Indices: 24618552--24619060 Score: 825
Period size: 139 Copynumber: 3.7 Consensus size: 140
24618542 ACTCGCCCCG
*
24618552 TCACATATATATACTTTCACATTCATCA-ATCGGCCATTAGG-CTTATCACATATATACA-TTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* *
24618614 ACA-TCATCACATTGGCCATTAGGCCTTATTACATATATACAC-TTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGG-CTTATAACATATATACACTTTCACATTCATCACATCGGCC
*
24618677 ATTAGGCATTA
130 ATTAGGCCTTA
*
24618688 TCACATTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA-ATTACACTT
1 TCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TACACTT
* *
24618752 TCACATTCATCACATCGTCCATTAGGCCTATAACATATATACACTTTCACATTCATCACATCGGC
64 TCACATTCATCACATCGGCCATTAGGCTTATAACATATATACACTTTCACATTCATCACATCGGC
24618817 CATTAGGCCTTA
129 CATTAGGCCTTA
*
24618829 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* *
24618894 ACATTCATC-CATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
66 ACATTCATCACATCGGCCATTAGGCTTATAACATATATACACTTTCACATTCATCACATCGGCCA
24618958 TTAGGCCTTA
131 TTAGGCCTTA
* *
24618968 TCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGCCTTATTACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
24619033 ACATTCATCACATCGGCCATTAGCCTTA
66 ACATTCATCACATCGGCCATTAGGCTTA
24619061 CTATCATTTC
Statistics
Matches: 349, Mismatches: 15, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
136 5 0.01
137 22 0.06
138 13 0.04
139 149 0.43
140 105 0.30
141 55 0.16
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (140 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCTTATAACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTA
Found at i:24622485 original size:40 final size:39
Alignment explanation
Indices: 24622428--24622607 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 39
24622418 CCAGCATGAT
* * *
24622428 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCAC-AA
* *
24622468 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACAA
* * *
24622507 TGCTCTTCGG-ACTTAGCCCGGATTTAGTAACTCGCACAA
1 TGCTCTTCGGAACTTAGCCCGGATATA-TCACTAGCACAA
* * *
24622546 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACAA
* *
24622586 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
24622608 CATCATTCGA
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
38 20 0.17
39 39 0.34
40 57 0.49
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACAA
Found at i:24622951 original size:29 final size:29
Alignment explanation
Indices: 24622912--24622990 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24622902 CTTAATAATC
*
24622912 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24622942 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24622971 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24622991 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24623033 original size:43 final size:43
Alignment explanation
Indices: 24622972--24623074 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
24622962 TGCATTTCAA
24622972 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24623015 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24623058 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24623075 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24624969 original size:37 final size:37
Alignment explanation
Indices: 24624919--24624997 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24624909 TTATTACGAA
* *
24624919 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24624956 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24624993 GTCTT
1 GTCTT
24624998 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24625232 original size:47 final size:47
Alignment explanation
Indices: 24625115--24625630 Score: 898
Period size: 47 Copynumber: 11.1 Consensus size: 47
24625105 GCCTTCGGGA
* * * * * * *
24625115 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24625162 CCTGTCA-ATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625208 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24625255 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625302 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625348 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625394 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625441 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625488 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625534 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625581 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625627 CTTA
1 CTTA
24625631 CTATCATTTC
Statistics
Matches: 450, Mismatches: 15, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
45 33 0.07
46 151 0.34
47 266 0.59
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24625430 original size:186 final size:186
Alignment explanation
Indices: 24625115--24625630 Score: 894
Period size: 186 Copynumber: 2.8 Consensus size: 186
24625105 GCCTTCGGGA
* * * * * * * *
24625115 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGT-CA-ATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGG-CCT-TACACATATATACA
24625178 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
63 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
24625243 CGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
128 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625302 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTACACATATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTACACATATATACACTT
24625367 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
24625432 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24625488 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA-CACATATATACACT
24625553 TTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCACATCG
65 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
24625617 GCCATTAGGCCTTA
130 GCCATTAGGCCTTA
24625631 CTATCATTTC
Statistics
Matches: 317, Mismatches: 9, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
184 1 0.00
185 5 0.02
186 231 0.73
187 80 0.25
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (186 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTACACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24625579 original size:233 final size:232
Alignment explanation
Indices: 24625115--24625630 Score: 890
Period size: 233 Copynumber: 2.2 Consensus size: 232
24625105 GCCTTCGGGA
* * * * * * * * * *
24625115 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAATATATATACT
1 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACT
24625180 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
65 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
24625245 GCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
130 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
24625310 ATATATACACTTTCACATTCATCACATCGGCATTAGGC
195 ATATATACACTTTCACATTCATCACATCGGCATTAGGC
24625348 CTTACACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 CTTACACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA-ATATATACACT
24625413 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
65 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
24625478 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCAC
130 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
24625542 ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 ATATATACACTTTCACATTCATCACATCGG-CATTAGGC
*
24625581 CTTATACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTACACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24625631 CTATCATTTC
Statistics
Matches: 269, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
232 86 0.32
233 183 0.68
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (232 bp):
CTTACACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACTTTCACATTCATCACATCGGCATTAGGC
Found at i:24636509 original size:27 final size:27
Alignment explanation
Indices: 24636479--24636619 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 27
24636469 CGATTTACAA
*
24636479 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24636506 AATTACTCAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
24636533 AATTATTGAAATATCCTTGTAGGGTAC
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24636560 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
24636587 AATTACAT-AGATACCCTTGTGGGGTAA
1 AATTAC-TGAAATACCCCTGTAGGGTAG
24636614 AATTAC
1 AATTAC
24636620 CATTTTGCCC
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:24636537 original size:54 final size:54
Alignment explanation
Indices: 24636479--24636591 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
24636469 CGATTTACAA
* *
24636479 AATTATTGAAATACCCCTGTAGGGTAGAATTACTC-AAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTACAAATAC-CGAAATACCCCTATAGGGTAG
* * *
24636533 AATTATTGAAATATCCTTGTAGGGTACAAATACCGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTACAAATACCGAAATACCCCTATAGGGTAG
24636587 AATTA
1 AATTA
24636592 CATAGATACC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (54 bp):
AATTATTGAAATACCCCTGTAGGGTACAAATACCGAAATACCCCTATAGGGTAG
Found at i:24637186 original size:22 final size:23
Alignment explanation
Indices: 24637137--24637187 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
24637127 AATTATTTTG
24637137 ATTATGGCTTTACGCCAACCTAC
1 ATTATGGCTTTACGCCAACCTAC
**
24637160 A-TATGGCTTTGTGCCAACCTA-
1 ATTATGGCTTTACGCCAACCTAC
24637181 ATTATGG
1 ATTATGG
24637188 ACGTGTGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (23 bp):
ATTATGGCTTTACGCCAACCTAC
Found at i:24637460 original size:6 final size:6
Alignment explanation
Indices: 24637451--24637569 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
24637441 TTGCATTCAC
* * * * *
24637451 ATTCTG ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG GTTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
24637501 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTA AATCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
24637550 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
24637570 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 67 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:24637543 original size:25 final size:25
Alignment explanation
Indices: 24637451--24637536 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
24637441 TTGCATTCAC
* *
24637451 ATTCTGATTCTGATTTTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* * *
24637476 ATACTGATTCTGGTTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
24637501 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
24637526 ATTCTGATTCT
1 ATTCTGATTCT
24637537 AAATCTGATT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:24638128 original size:79 final size:79
Alignment explanation
Indices: 24637997--24638155 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
24637987 ACATCACATA
24637997 TCCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCAAGATTTTTACAAAGTTGTTAAGAATGT
1 TCCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCAAGATTTTTACAAAGTTGTTAAGAATGT
24638062 TATTCGGCTGGGAT
66 TATTCGGCTGGGAT
24638076 TCCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCAAGATTTTTACAAAGTTGTTAAGAATGT
1 TCCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCAAGATTTTTACAAAGTTGTTAAGAATGT
24638141 TATTCGGCTGGGAT
66 TATTCGGCTGGGAT
24638155 T
1 T
24638156 TTCTAATAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (79 bp):
TCCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCAAGATTTTTACAAAGTTGTTAAGAATGT
TATTCGGCTGGGAT
Found at i:24640597 original size:27 final size:27
Alignment explanation
Indices: 24640566--24640621 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
24640556 AGTGCTACTG
24640566 TCCAAAACAATTTTATTGCTAATTCAC
1 TCCAAAACAATTTTATTGCTAATTCAC
24640593 TCCAAAACAATTTTATTGCTAATTCAC
1 TCCAAAACAATTTTATTGCTAATTCAC
24640620 TC
1 TC
24640622 TTTCACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.38
Consensus pattern (27 bp):
TCCAAAACAATTTTATTGCTAATTCAC
Found at i:24649093 original size:25 final size:25
Alignment explanation
Indices: 24649064--24649111 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24649054 TTATAATATG
* * *
24649064 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
24649089 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24649112 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:24649195 original size:11 final size:11
Alignment explanation
Indices: 24649159--24649214 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
24649149 CATGGTATGT
24649159 ATGATATGCAC
1 ATGATATGCAC
* *
24649170 ATGAGATG--T
1 ATGATATGCAC
24649179 ATGATATGCAC
1 ATGATATGCAC
*
24649190 ATGATATG--T
1 ATGATATGCAC
24649199 ATGATATGCAC
1 ATGATATGCAC
24649210 ATGAT
1 ATGAT
24649215 GTATTTATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:24649214 original size:20 final size:20
Alignment explanation
Indices: 24649148--24649214 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
24649138 ATTTTGATAA
*
24649148 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
24649168 ACATGAGATGTATGATATGC
1 ACATGATATGTATGATATGC
24649188 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
24649208 ACATGAT
1 ACATGAT
24649215 GTATTTATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:24649371 original size:49 final size:47
Alignment explanation
Indices: 24649263--24649420 Score: 217
Period size: 51 Copynumber: 3.2 Consensus size: 47
24649253 GGAGGAAGTG
*
24649263 TAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTATGCCCCAG-TTA-TGAAAAGGGCTTTGCCCCAG-TTA-T
*
24649314 GAAAAGGGCTTATGCCCCAGTTATGAAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATG-AAAAGGGCTT-TGCCCCAGTTAT
* *
24649363 TAAAAGGGCGTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
24649410 TAAAAGAGGCT
1 TAAAAG-GGCT
24649421 AGGCCTCTAG
Statistics
Matches: 98, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
47 18 0.18
48 13 0.13
49 24 0.24
50 16 0.16
51 27 0.28
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
Found at i:24649376 original size:24 final size:24
Alignment explanation
Indices: 24649263--24649420 Score: 212
Period size: 25 Copynumber: 6.4 Consensus size: 24
24649253 GGAGGAAGTG
24649263 TAAAAGGGCTTATGCCCCAGTTTAT
1 TAAAAGGGCTTATGCCCCAG-TTAT
*
24649288 TGAAAAGGGCTT-TGCCCCAGTTTACC
1 T-AAAAGGGCTTATGCCCCAG-TTA-T
*
24649314 GAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
24649338 GAAAAAGGGCTTATGCCCCAGTTAT
1 -TAAAAGGGCTTATGCCCCAGTTAT
*
24649363 TAAAAGGGCGTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
24649387 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
24649410 TAAAAGAGGCT
1 TAAAAG-GGCT
24649421 AGGCCTCTAG
Statistics
Matches: 121, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
23 18 0.15
24 36 0.30
25 49 0.40
26 18 0.15
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:24657084 original size:25 final size:25
Alignment explanation
Indices: 24657055--24657102 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24657045 TTATAATATG
* * *
24657055 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
24657080 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24657103 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:24657169 original size:20 final size:20
Alignment explanation
Indices: 24657146--24657196 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
24657136 TAAACATGGT
24657146 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
24657166 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
24657186 ATGTATTATAT
1 ATGTATGATAT
24657197 TATAAATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:24657324 original size:24 final size:24
Alignment explanation
Indices: 24657241--24657385 Score: 195
Period size: 24 Copynumber: 5.9 Consensus size: 24
24657231 GAGGAAGTGC
24657241 AAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAG-TTATT
* *
24657266 GAAAAGGGCTTATGCCCTAGTTATGA
1 -AAAAGGGCTTATGCCCCAGTTAT-T
*
24657292 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
24657316 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
24657340 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
24657363 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
24657386 CATGATAAAG
Statistics
Matches: 110, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.17
24 39 0.35
25 34 0.31
26 18 0.16
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:24657331 original size:49 final size:48
Alignment explanation
Indices: 24657241--24657385 Score: 195
Period size: 47 Copynumber: 3.0 Consensus size: 48
24657231 GAGGAAGTGC
*
24657241 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAGTTATGA
1 AAAAGGGCTTATGCCCCAG-TTATT-AAAAGGGCTTATGCCCCAGTTAT-A
* *
24657292 AAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATA
*
24657340 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTA
24657386 CATGATAAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
47 22 0.25
48 20 0.23
49 22 0.25
50 5 0.06
51 18 0.21
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATA
Found at i:24659177 original size:31 final size:31
Alignment explanation
Indices: 24659139--24659202 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
24659129 CCTTTTCATA
*
24659139 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
24659170 TTTCATATTTCATATTACTAGGCTGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
24659201 TT
1 TT
24659203 ACTATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:24659449 original size:24 final size:24
Alignment explanation
Indices: 24659396--24659562 Score: 225
Period size: 24 Copynumber: 7.0 Consensus size: 24
24659386 GCTTTATCAT
*
24659396 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
24659420 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTG
24659445 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
24659468 ATAACTGAGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
24659492 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
24659516 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
24659539 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
24659563 TACTTCCTCC
Statistics
Matches: 128, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
23 42 0.33
24 74 0.58
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:24659497 original size:71 final size:72
Alignment explanation
Indices: 24659396--24659562 Score: 241
Period size: 71 Copynumber: 2.3 Consensus size: 72
24659386 GCTTTATCAT
* *
24659396 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 ATAACT-GAGGCATAAGCC-CTTTTGAGTAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATA
*
24659459 AGCCCTTTG
64 AGCCCTTTA
* *
24659468 ATAACTGAGGCGTAAGCCCTTTTGA-TAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 ATAACTGAGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
24659532 CCCTTTA
66 CCCTTTA
*
24659539 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGAGGCATAAGCCCTTTTG
24659563 TACTTCCTCC
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (72 bp):
ATAACTGAGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
CCCTTTA
Found at i:24659561 original size:47 final size:48
Alignment explanation
Indices: 24659396--24659562 Score: 225
Period size: 47 Copynumber: 3.5 Consensus size: 48
24659386 GCTTTATCAT
* * *
24659396 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTGA-TAACTGGGGCATAAGCCCTTTTA
* * *
24659445 ATAACTGGGGCATAAGCCC-TTTGATAACTGAGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
24659492 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
24659539 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
24659563 TACTTCCTCC
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
47 68 0.64
48 27 0.25
49 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
Found at i:24660896 original size:26 final size:25
Alignment explanation
Indices: 24660863--24660949 Score: 79
Period size: 26 Copynumber: 3.4 Consensus size: 25
24660853 TCATACGGAA
*
24660863 CATA-AGGGCATATTCGTCATTTTAC
1 CATACAGGGC-TATTCGTCACTTTAC
*
24660888 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATT-C-GTCACTTTAC
*
24660915 CCTACAGGGGCT-TTCGATCACTTTAC
1 CATACA-GGGCTATTCG-TCACTTTAC
*
24660941 CCTACAGGG
1 CATACAGGG
24660950 GCTTTACGGT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
25 12 0.23
26 21 0.40
27 16 0.30
28 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (25 bp):
CATACAGGGCTATTCGTCACTTTAC
Found at i:24660970 original size:26 final size:27
Alignment explanation
Indices: 24660878--24660960 Score: 116
Period size: 26 Copynumber: 3.1 Consensus size: 27
24660868 GGGCATATTC
* *
24660878 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
24660905 GTCACTTTACCCTACAGGGGCTTT-CG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
24660931 ATCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
24660958 GTC
1 GTC
24660961 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 25 0.50
27 24 0.48
28 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:24661052 original size:27 final size:27
Alignment explanation
Indices: 24661019--24661236 Score: 163
Period size: 27 Copynumber: 8.0 Consensus size: 27
24661009 TTGGTAAATC
*
24661019 TACAAACCAAAGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
**
24661046 TGTAAACC-AGTGGTATTTCTA-TAATTTT
1 TACAAACCAAG-GGTATTTC-AGTAA-TTT
* * * *
24661074 TAGAAAGTCAAGGGTATTTCTGTAACTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** * **
24661102 TGTAAATCAAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* * *
24661129 TACAAACTAGGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*** *
24661156 TACAAATTGAGGGTATTTCTGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
24661183 TACAAACCAAGGGTATTTTAGCAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* * *
24661210 TACAGA-CTAGGGTATTTTAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
24661236 T
1 T
24661237 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
26 20 0.13
27 105 0.69
28 14 0.09
29 12 0.08
30 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:24661171 original size:110 final size:108
Alignment explanation
Indices: 24660999--24661200 Score: 244
Period size: 110 Copynumber: 1.9 Consensus size: 108
24660989 TTTCATCCTA
* **
24660999 CAAGGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT
1 CAAGGGTATTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTACAAACCAGTGGTATTT
* *
24661064 CTATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
66 CTATAA-TTTTACAAA-CCAAGGGTATTTCTGTAACTTTGTAAAT
* * * ** * **
24661109 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAATTGAG-GGTATT
1 CAAGGGTATTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTACAAA-CCAGTGGTATT
*
24661173 TCTGTAATTTTACAAACCAAGGGTATTT
65 TCTATAATTTTACAAACCAAGGGTATTT
24661201 TAGCAATTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
108 11 0.14
109 8 0.10
110 56 0.73
111 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (108 bp):
CAAGGGTATTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTACAAACCAGTGGTATTT
CTATAATTTTACAAACCAAGGGTATTTCTGTAACTTTGTAAAT
Found at i:24661209 original size:81 final size:81
Alignment explanation
Indices: 24661019--24661250 Score: 243
Period size: 81 Copynumber: 2.9 Consensus size: 81
24661009 TTGGTAAATC
* * ** * * *
24661019 TACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTCTA-TAATTTTTAGAAAGTC
1 TACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTC-AGTAA-TTTTACAAA-TC
*
24661083 AAGGGTATTTCTGTAACTT
63 GAGGGTATTTCTGTAACTT
** * * * *
24661102 TGTAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAATTGAG
1 TACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
*
24661167 GGTATTTCTGTAATTT
66 GGTATTTCTGTAACTT
* * * **
24661183 TACAAACCAAGGGTATTTTAGCAATTTTACAGACTA-GGGTATTTTAGTAATTTTGTAAATCGAG
1 TACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
24661247 GGTA
66 GGTA
24661251 AAACAGTAAT
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
80 27 0.22
81 48 0.39
82 8 0.07
83 39 0.32
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
TACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
GGTATTTCTGTAACTT
Found at i:24661258 original size:27 final size:27
Alignment explanation
Indices: 24661228--24661375 Score: 188
Period size: 27 Copynumber: 5.5 Consensus size: 27
24661218 AGGGTATTTT
* *
24661228 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
24661255 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
24661282 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * **
24661309 GGTACTTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
24661336 GGTAATTCTGTAAGTCAAGGGTTAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
24661363 GGTAATTATGTAA
1 AGTAATTCTGTAA
24661376 TCGGGGGTAC
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:24661274 original size:80 final size:81
Alignment explanation
Indices: 24661102--24661277 Score: 201
Period size: 80 Copynumber: 2.2 Consensus size: 81
24661092 TCTGTAACTT
* * * *
24661102 TGTAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAATTGAG
1 TGTAAATCAAGGGTATTTTAGCAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
*** * *
24661167 GGTATTTCTGTAATTT
66 GGTAAAACAGTAATTC
** * * * **
24661183 TACAAACCAAGGGTATTTTAGCAATTTTACAGACTA-GGGTATTTTAGTAATTTTGTAAATCGAG
1 TGTAAATCAAGGGTATTTTAGCAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
24661247 GGTAAAACAGTAATTC
66 GGTAAAACAGTAATTC
24661263 TGTAAATCAAGGGTA
1 TGTAAATCAAGGGTA
24661278 AAACAGTAAT
Statistics
Matches: 76, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
80 46 0.61
81 30 0.39
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (81 bp):
TGTAAATCAAGGGTATTTTAGCAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCGAG
GGTAAAACAGTAATTC
Found at i:24663535 original size:26 final size:26
Alignment explanation
Indices: 24663486--24663536 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
24663476 TTGATAGTTT
* *
24663486 AATGTTATAATTACATGCTACTATGA
1 AATGTTATAATTAAATGATACTATGA
* *
24663512 AATGTTATAATTAAATTATGCTATG
1 AATGTTATAATTAAATGATACTATG
24663537 GCTGAATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (26 bp):
AATGTTATAATTAAATGATACTATGA
Found at i:24673124 original size:27 final size:27
Alignment explanation
Indices: 24673093--24673270 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24673083 TAAATTGTAC
24673093 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24673120 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24673146 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24673174 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24673202 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24673229 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24673256 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24673271 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24673207 original size:82 final size:81
Alignment explanation
Indices: 24673094--24673249 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24673084 AAATTGTACA
* *
24673094 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24673158 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24673175 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24673240 TGCGAGTTGA
65 TGCGAATTGA
24673250 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24673261 original size:82 final size:81
Alignment explanation
Indices: 24673090--24673270 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24673080 GATTAAATTG
* *
24673090 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24673155 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24673171 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24673235 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24673253 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24673271 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24867050 original size:27 final size:27
Alignment explanation
Indices: 24867019--24867196 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24867009 TAAATTGTAC
24867019 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24867046 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24867072 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24867100 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24867128 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24867155 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24867182 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24867197 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24867133 original size:82 final size:81
Alignment explanation
Indices: 24867020--24867175 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24867010 AAATTGTACA
* *
24867020 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24867084 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24867101 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24867166 TGCGAGTTGA
65 TGCGAATTGA
24867176 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24867187 original size:82 final size:81
Alignment explanation
Indices: 24867016--24867196 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24867006 GATTAAATTG
* *
24867016 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24867081 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24867097 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24867161 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24867179 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24867197 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24874723 original size:15 final size:15
Alignment explanation
Indices: 24874697--24874739 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
24874687 AGTAATCACT
24874697 GGCATAAAGCCTGCTA
1 GGCAT-AAGCCTGCTA
24874713 GGCATAAGCCTGCTA
1 GGCATAAGCCTGCTA
*
24874728 GCCATAAGCCTG
1 GGCATAAGCCTG
24874740 TATTTCACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (15 bp):
GGCATAAGCCTGCTA
Found at i:24876028 original size:14 final size:15
Alignment explanation
Indices: 24876011--24876039 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24876001 GCACGGAAAT
24876011 TTCACACAT-ATAAA
1 TTCACACATAATAAA
24876025 TTCACACATAATAAA
1 TTCACACATAATAAA
24876040 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:24880520 original size:40 final size:40
Alignment explanation
Indices: 24880484--24880576 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
24880474 CGGCTATTTG
24880484 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* * * *
24880524 TGGCACTTAATGTGCGATTTGAGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
*
24880564 CGGCACTTAGTGT
1 TGGCACTTAGTGT
24880577 AATAGATATC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
Found at i:24885974 original size:43 final size:46
Alignment explanation
Indices: 24885915--24886048 Score: 139
Period size: 51 Copynumber: 2.9 Consensus size: 46
24885905 GAGATCTGTG
* * * *
24885915 GCATCCAAGCTCGTTGAAAGGTCCAAGTTCATTATGGATGC-A-A-
1 GCATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
* *
24885958 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATGATGGATGCGATTCAT
1 GCATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATGCGA-T-AT
*
24886006 GTAATATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATG
1 G---CATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATG
24886049 TGTTACATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
43 35 0.47
44 1 0.01
47 1 0.01
48 1 0.01
51 36 0.49
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
GCATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
Found at i:24901490 original size:30 final size:30
Alignment explanation
Indices: 24901454--24901516 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
24901444 ACTTAACAAG
*
24901454 CAAATGTCTT-TAAAATAATAACAAAATTAA
1 CAAATGT-TTCTAAAATAATAAAAAAATTAA
*
24901484 CAAATGTTTCTACAATAATAAAAAAATTAA
1 CAAATGTTTCTAAAATAATAAAAAAATTAA
24901514 CAA
1 CAA
24901517 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTTTCTAAAATAATAAAAAAATTAA
Found at i:24905543 original size:46 final size:46
Alignment explanation
Indices: 24905476--24905647 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
24905466 TGTAACCCGC
* * *
24905476 CCATAAGCAAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
24905522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * *
24905572 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
24905615 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
24905648 TGAATGCCCA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:24905655 original size:93 final size:93
Alignment explanation
Indices: 24905485--24905655 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
24905475 CCCATAAGCA
*
24905485 AACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
24905550 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGAATGCCTAGTTACATCTCACG
* * *
24905578 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
24905643 GAGTTTGAATGCC
66 GAGTTCGAATGCC
24905656 CAAATATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGAATGCCTAGTTACATCTCACG
Found at i:24909452 original size:18 final size:18
Alignment explanation
Indices: 24909418--24909452 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24909408 TTGCTACTGG
* *
24909418 TTTTAATGTGCTGATTTT
1 TTTTAATGAGCTAATTTT
24909436 TTTTAATGAGCTAATTT
1 TTTTAATGAGCTAATTT
24909453 AATGTGCTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.14, T:0.57
Consensus pattern (18 bp):
TTTTAATGAGCTAATTTT
Found at i:24912129 original size:40 final size:40
Alignment explanation
Indices: 24912074--24912293 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
24912064 TTCGAATGAC
*
24912074 ATCCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
24912114 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
24912154 ATTCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* * *
24912194 ATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
24912234 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
24912274 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
24912294 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 146 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:24918949 original size:40 final size:40
Alignment explanation
Indices: 24918894--24918976 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
24918884 TTCGAATGAC
*
24918894 ATCCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
24918934 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
24918974 ATC
1 ATC
24918977 TGTGACAGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:24920654 original size:29 final size:29
Alignment explanation
Indices: 24920621--24920694 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
24920611 GTTGTGAGAT
* *
24920621 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
24920650 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
24920679 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24920695 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:24926307 original size:40 final size:40
Alignment explanation
Indices: 24926246--24926492 Score: 318
Period size: 40 Copynumber: 6.2 Consensus size: 40
24926236 CGGAATTTAG
* * * *
24926246 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
24926286 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
24926326 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
24926366 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
24926406 CCGGATAAAAGCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
24926446 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
24926486 CCGGATA
1 CCGGATA
24926493 TCATTCAAAT
Statistics
Matches: 186, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 180 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:24926466 original size:120 final size:120
Alignment explanation
Indices: 24926233--24926492 Score: 355
Period size: 120 Copynumber: 2.2 Consensus size: 120
24926223 ACCCAAGTTT
* * * * * *
24926233 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGC
* * * *
24926297 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAATCAACTAGCACAAATGC
* * *
24926352 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAAG
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGAT-AAAG
*
24926417 C-ACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTAGCACAAATGC
65 CAACTAGCACAAATGCCTTCGGGTCTTAACCCGGAT-AAATCAACTAGCACAAATGC
24926472 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
24926493 TCATTCAAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
119 10 0.08
120 105 0.85
121 8 0.07
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGC
AACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAATCAACTAGCACAAATGC
Found at i:24932388 original size:29 final size:29
Alignment explanation
Indices: 24932355--24932428 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
24932345 GTTGTGAGAT
* *
24932355 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
24932384 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
24932413 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24932429 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:24934060 original size:40 final size:40
Alignment explanation
Indices: 24934005--24934146 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
24933995 GGGTGTTACA
24934005 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
24934045 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
24934085 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
24934125 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24934147 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
39 13 0.15
40 74 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:24935604 original size:42 final size:42
Alignment explanation
Indices: 24935533--24935648 Score: 178
Period size: 42 Copynumber: 2.7 Consensus size: 42
24935523 GCGTTACAAT
* *
24935533 TTTACCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGGCC
1 TTTAGCGGCATTTGTGGG-AAAGCACCGCTAAAAGTCATGGCC
24935576 TTTAGCGGCATTTGTGGGAAAGCACCGCTAAAAGTCATGGCC
1 TTTAGCGGCATTTGTGGGAAAGCACCGCTAAAAGTCATGGCC
* *
24935618 TTTAGCGGCATTGGTGGGGAAAGCGCCGCTA
1 TTTAGCGGCATTTGT-GGGAAAGCACCGCTA
24935649 CATGACTTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 38 0.56
43 30 0.44
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (42 bp):
TTTAGCGGCATTTGTGGGAAAGCACCGCTAAAAGTCATGGCC
Found at i:24936517 original size:23 final size:23
Alignment explanation
Indices: 24936481--24936829 Score: 318
Period size: 23 Copynumber: 15.2 Consensus size: 23
24936471 AAATAAGAAC
24936481 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
24936504 TCAAATACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
24936528 TT-AACACTTCAATTTATAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
24936550 TTAAACACTTCAATTTGCAGTACT
1 TTAAACACTTCAATTTACAGCA-T
*
24936574 TT-AACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* *
24936597 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTACAGCAT
* *
24936619 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
24936641 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
24936664 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* * *
24936687 TTAAACACCTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
24936710 TTAAGCACTTAAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
24936733 TTAAACACTTCAATTTACGGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
24936756 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
24936780 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
24936802 TTAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
24936826 TTAA
1 TTAA
24936830 CATCTCAATT
Statistics
Matches: 264, Mismatches: 48, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
22 25 0.09
23 226 0.86
24 13 0.05
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:24940477 original size:22 final size:22
Alignment explanation
Indices: 24940452--24940520 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
24940442 GATTAAAAAA
*
24940452 TTAAATATTAAATTTTAAAATTT
1 TTAAATTTTAAATTTT-AAATTT
* * **
24940475 TAAAATTTTAATTTTTTTATTT
1 TTAAATTTTAAATTTTAAATTT
24940497 TTAAATTTTAAATTTTAAATTT
1 TTAAATTTTAAATTTTAAATTT
24940519 TT
1 TT
24940521 TTGAAGATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 24 0.65
23 13 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTAAATTTTAAATTTTAAATTT
Found at i:24940497 original size:30 final size:30
Alignment explanation
Indices: 24940463--24940522 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
24940453 TAAATATTAA
24940463 ATTTTAAAATTTTAAAATTTT-AATTTTTTT
1 ATTTTAAAATTTT-AAATTTTAAATTTTTTT
*
24940493 ATTTTTAAATTTTAAATTTTAAATTTTTTT
1 ATTTTAAAATTTTAAATTTTAAATTTTTTT
24940523 GAAGATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (30 bp):
ATTTTAAAATTTTAAATTTTAAATTTTTTT
Found at i:24940505 original size:7 final size:7
Alignment explanation
Indices: 24940452--24940519 Score: 73
Period size: 7 Copynumber: 9.3 Consensus size: 7
24940442 GATTAAAAAA
*
24940452 TTAAATA
1 TTAAATT
24940459 TTAAATT
1 TTAAATT
24940466 TTAAAATT
1 TT-AAATT
24940474 TTAAAATT
1 TT-AAATT
*
24940482 TTAATTTT
1 TTAA-ATT
* *
24940490 TTTATTT
1 TTAAATT
24940497 TTAAATT
1 TTAAATT
24940504 TTAAATT
1 TTAAATT
24940511 TTAAATT
1 TTAAATT
24940518 TT
1 TT
24940520 TTTGAAGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
7 34 0.63
8 20 0.37
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTAAATT
Found at i:24940520 original size:8 final size:8
Alignment explanation
Indices: 24940459--24940546 Score: 67
Period size: 7 Copynumber: 10.9 Consensus size: 8
24940449 AAATTAAATA
24940459 TTAAA-TT
1 TTAAATTT
*
24940466 TTAAAATT
1 TTAAATTT
*
24940474 TTAAAATT
1 TTAAATTT
24940482 TT-AATTT
1 TTAAATTT
**
24940489 TTTTATTT
1 TTAAATTT
24940497 TTAAA-TT
1 TTAAATTT
24940504 TTAAA-TT
1 TTAAATTT
24940511 TTAAATTTTT
1 TTAAA--TTT
24940521 TTGAAGATTT
1 TT-AA-ATTT
24940531 TTATAATTT
1 TTA-AATTT
24940540 TTAAATT
1 TTAAATT
24940547 AACATACAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
7 25 0.36
8 23 0.33
9 8 0.12
10 10 0.14
11 2 0.03
12 1 0.01
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (8 bp):
TTAAATTT
Found at i:24940886 original size:25 final size:23
Alignment explanation
Indices: 24940863--24940909 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
24940853 TCAATATATT
24940863 TTTATAT-TGAATAAATATAAATA
1 TTTATATATGAA-AAATATAAATA
* *
24940886 TTTATGTATGAAATATATAAATA
1 TTTATATATGAAAAATATAAATA
24940909 T
1 T
24940910 AAAATGATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (23 bp):
TTTATATATGAAAAATATAAATA
Found at i:24940999 original size:21 final size:21
Alignment explanation
Indices: 24940960--24941017 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
24940950 GACCATAAAC
* *
24940960 CATAAACACTAAAACCCCAA-
1 CATAAACACTAAATCCCAAAT
24940980 CTATAAAACACTAAATCCCAAAT
1 C-AT-AAACACTAAATCCCAAAT
*
24941003 CATAAACCCTAAATC
1 CATAAACACTAAATC
24941018 ATAAACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 1 0.03
21 13 0.41
22 17 0.53
23 1 0.03
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (21 bp):
CATAAACACTAAATCCCAAAT
Done.