Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 80 of 332
Found at i:24941244 original size:15 final size:14
Alignment explanation
Indices: 24941163--24941292 Score: 68
Period size: 14 Copynumber: 8.9 Consensus size: 14
24941153 TTAATTAATC
*
24941163 TAAACCCTGAACTCT
1 TAAACCCTAAAC-CT
* *
24941178 TAATCCCTAATCCT
1 TAAACCCTAAACCT
*
24941192 TAAACCATAATAAGCCT
1 TAAACCCT-A-AA-CCT
*
24941209 T-AACTCCTAAA-AT
1 TAAAC-CCTAAACCT
24941222 ATAAACCCTAAACCT
1 -TAAACCCTAAACCT
*
24941237 TGAAACCCTAACCCT
1 T-AAACCCTAAACCT
* *
24941252 TAATCCTTAAACC-
1 TAAACCCTAAACCT
* *
24941265 TCAACCCTTAAACCA
1 TAAACCC-TAAACCT
*
24941280 TAATCCCTAAACC
1 TAAACCCTAAACC
24941293 CATAATTCAT
Statistics
Matches: 87, Mismatches: 18, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
13 5 0.06
14 37 0.43
15 34 0.39
16 5 0.06
17 6 0.07
ACGTcount: A:0.39, C:0.33, G:0.02, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:24941251 original size:21 final size:21
Alignment explanation
Indices: 24941225--24941278 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
24941215 CTAAAATATA
24941225 AACCC-TAAACCTTGAAACC-C
1 AACCCTTAAACCTT-AAACCTC
*
24941245 TAACCCTTAATCCTTAAACCTC
1 -AACCCTTAAACCTTAAACCTC
24941267 AACCCTTAAACC
1 AACCCTTAAACC
24941279 ATAATCCCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22
Consensus pattern (21 bp):
AACCCTTAAACCTTAAACCTC
Found at i:24954404 original size:93 final size:93
Alignment explanation
Indices: 24954292--24954463 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
24954282 GCCCATAAGC
*
24954292 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGAC-TCAACTC
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACAT-AACTC
24954355 AATGAGTTCGGATGCCTAGTTACATTTCAT
64 AATGAGTTCGGATGCCTAGTTACATTTCAT
* *
24954385 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACATAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACATAACTCAA
24954450 TGAGTTCGGATGCC
66 TGAGTTCGGATGCC
24954464 CAAATATCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.96
94 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACATAACTCAA
TGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:24954459 original size:46 final size:46
Alignment explanation
Indices: 24954284--24954459 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
24954274 TGTAACCCGC
* * *
24954284 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCAT
* * * * *
24954330 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* *
24954376 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
24954423 CCATAAGTGAACTCAGACAT-AACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGAC-TCAACTCAACGAGTTCGGA
24954460 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.04
46 62 0.60
47 36 0.35
48 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:24958140 original size:39 final size:39
Alignment explanation
Indices: 24958088--24958218 Score: 201
Period size: 39 Copynumber: 3.4 Consensus size: 39
24958078 GACTTTAGGC
* * * *
24958088 CCGGATAT-ATTCCAGTAGGTAGCCTGCGGACCTTAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
* *
24958126 CCGGATATGTTTCCAGCACATAGCCTGCAGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
24958165 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
24958204 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
24958219 AATATCATGC
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 8 0.10
39 76 0.90
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
Found at i:24962378 original size:50 final size:50
Alignment explanation
Indices: 24962314--24962695 Score: 356
Period size: 50 Copynumber: 7.6 Consensus size: 50
24962304 CTGGTATGCA
*
24962314 TAGTAGCCTGCACTTAGTGCTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* *
24962364 TAGTAGCCTGCACTTAGTACTACACCCAT--GACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACA--CATGCGACCTAACAATCTGGTACACG
* * * * * * * * *
24962414 TAGTAGCCTGCACTTATTACTACACACGTGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACG
* * *
24962465 TAGTAGTCTGCACTTAGTACTACACATGCGACCTAACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * * * ** *
24962515 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGATAT-TGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA-ATCT-GGTACACG
* * *
24962566 TAGTAGCCTACACTTAGTACTACACATGCGAGCTAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * *** *
24962616 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT--AACAATCTGGTACACG
* *
24962668 TAGTAACCTGCACATAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
24962696 TGTTCTTACA
Statistics
Matches: 266, Mismatches: 56, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
48 2 0.01
50 147 0.55
51 79 0.30
52 38 0.14
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
Found at i:24962488 original size:101 final size:100
Alignment explanation
Indices: 24962314--24962646 Score: 418
Period size: 101 Copynumber: 3.3 Consensus size: 100
24962304 CTGGTATGCA
* * * * * * * * *
24962314 TAGTAGCCTGCACTTAGTGCTACACATGCGACCTAA-CAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
* *
24962378 TAGTACTACACCCAT-GACCTAACCATCTGATACACG
66 TAGTACTACA--CATCGACCTAACAATCTGGTACACG
* *
24962414 TAGTAGCCTGCACTTATTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGTCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
* *
24962479 TAGTACTACACATGCGACCTAACAATCCGGTACATG
66 TAGTACTACACAT-CGACCTAACAATCTGGTACACG
* * * * *
24962515 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGATATTGGGTATGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
* *
24962580 TAGTACTACACATGCGAGCTAATAATCTGGTACACG
66 TAGTACTACACAT-CGACCTAACAATCTGGTACACG
24962616 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
24962647 CCTAAAACTA
Statistics
Matches: 203, Mismatches: 27, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
99 3 0.01
100 30 0.15
101 170 0.84
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACATCGACCTAACAATCTGGTACACG
Found at i:24962612 original size:151 final size:150
Alignment explanation
Indices: 24962303--24962651 Score: 405
Period size: 151 Copynumber: 2.3 Consensus size: 150
24962293 ACCGAAGCTC
* * *
24962303 TCTGGTATGCATAGTAGCCTGCACTTAGTGCTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGT
* * * * * *
24962368 AGCCTGCACTTAGTACTACACCCATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTATTA
66 AGCCTACACTTAGTACTACACACATGACCGAACCATCTGATACACATAGTAGCCTACACTTAGTA
* *
24962433 CTACACACGTGATCGAAGCTA
131 CTACACACGCGAGCGAA-CTA
* * *
24962454 TCGGGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCTAACAATCCGGTACATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGT
* * * * * **
24962519 AGCCTACACTTAGTACTACACACGTGATCGAA-GATATTGGGTATGCATAGTAGCCTACACTTAG
66 AGCCTACACTTAGTACTACACACATGACCGAACCAT-CT-GATACACATAGTAGCCTACACTTAG
* *
24962583 TACTACACATGCGAGCTAA-TAA
129 TACTACACACGCGAGCGAACT-A
* * * *
24962605 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
24962652 AACTATCTTA
Statistics
Matches: 166, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
150 3 0.02
151 129 0.78
152 34 0.20
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (150 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGT
AGCCTACACTTAGTACTACACACATGACCGAACCATCTGATACACATAGTAGCCTACACTTAGTA
CTACACACGCGAGCGAACTA
Found at i:24966408 original size:38 final size:38
Alignment explanation
Indices: 24966366--24966481 Score: 223
Period size: 38 Copynumber: 3.1 Consensus size: 38
24966356 TGAAAAGGAG
24966366 AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
1 AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
24966404 AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
1 AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
*
24966442 AAAATTTAGTTGCCGAGTGGACTAATCCATTATAGGCA
1 AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
24966480 AA
1 AA
24966482 TTCGATATGA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 77 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (38 bp):
AAAATTTAGTTGCCGAGTGGACTAATCGATTATAGGCA
Found at i:24968774 original size:15 final size:14
Alignment explanation
Indices: 24968753--24968852 Score: 59
Period size: 15 Copynumber: 7.3 Consensus size: 14
24968743 TTTTCTCACC
24968753 CTCTTTTTCTTTTT
1 CTCTTTTTCTTTTT
24968767 CATCTTTTTC-TTTT
1 C-TCTTTTTCTTTTT
* *
24968781 CTCATTTTCTTTTCA
1 CTCTTTTTCTTTT-T
* *
24968796 CTCTCTTTTATTGTT
1 CTCT-TTTTCTTTTT
24968811 -T-TTTTTC--TTT
1 CTCTTTTTCTTTTT
* *
24968821 -TCTTTTACATTTT
1 CTCTTTTTCTTTTT
*
24968834 CACTCTTTTCTTTTT
1 CTCT-TTTTCTTTTT
24968849 CTCT
1 CTCT
24968853 CATTTGATCA
Statistics
Matches: 64, Mismatches: 13, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
10 3 0.05
11 5 0.08
12 4 0.06
13 11 0.17
14 12 0.19
15 22 0.34
16 7 0.11
ACGTcount: A:0.07, C:0.22, G:0.01, T:0.70
Consensus pattern (14 bp):
CTCTTTTTCTTTTT
Found at i:24968785 original size:16 final size:15
Alignment explanation
Indices: 24968754--24968793 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
24968744 TTTCTCACCC
24968754 TCTTTTTCTTTTTCA
1 TCTTTTTCTTTTTCA
24968769 TCTTTTTC-TTTTC-
1 TCTTTTTCTTTTTCA
*
24968782 TCATTTTCTTTT
1 TCTTTTTCTTTT
24968794 CACTCTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 8 0.35
15 8 0.35
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (15 bp):
TCTTTTTCTTTTTCA
Found at i:24968790 original size:13 final size:14
Alignment explanation
Indices: 24968757--24968795 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
24968747 CTCACCCTCT
*
24968757 TTTTCTTTTTCATCT
1 TTTTC-TTTTCATCA
24968772 TTTTCTTTTC-TCA
1 TTTTCTTTTCATCA
24968785 TTTTCTTTTCA
1 TTTTCTTTTCA
24968796 CTCTCTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 12 0.55
14 5 0.23
15 5 0.23
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCTTTTCATCA
Found at i:24982162 original size:42 final size:42
Alignment explanation
Indices: 24982103--24982193 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
24982093 TACCAATTTC
* *
24982103 ATACACACATATGAACGAGTAGAGCCGGGGTCTATCAAAGCA
1 ATACACACATACGAACGAGTAGAGCCAGGGTCTATCAAAGCA
24982145 ATACACACATACGAACGAGTAGAGCCAGGGTCTATCAAAGCA
1 ATACACACATACGAACGAGTAGAGCCAGGGTCTATCAAAGCA
24982187 ATA-ACAC
1 ATACACAC
24982194 TAGTATCATA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.15
Consensus pattern (42 bp):
ATACACACATACGAACGAGTAGAGCCAGGGTCTATCAAAGCA
Found at i:24984159 original size:29 final size:28
Alignment explanation
Indices: 24984094--24984215 Score: 120
Period size: 28 Copynumber: 4.3 Consensus size: 28
24984084 ACATACATGT
** * *
24984094 ATATGGCCCACTTGGCCCAA-TCTCATTT
1 ATATGGCCCA-TCAGCCCAATTCACATTC
*
24984122 ATATCGCCCATCAGACCCAATTCACATTC
1 ATATGGCCCATCAG-CCCAATTCACATTC
*
24984151 ATATGGCCCATCAGCCCAATTCATATTC
1 ATATGGCCCATCAGCCCAATTCACATTC
* * * *
24984179 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATCA-GCCCAATTCACATTC
24984208 ATATGGCC
1 ATATGGCC
24984216 TGTTAGGCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
27 2 0.03
28 39 0.49
29 38 0.48
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATCAGCCCAATTCACATTC
Found at i:24984188 original size:57 final size:57
Alignment explanation
Indices: 24984094--24984215 Score: 140
Period size: 57 Copynumber: 2.1 Consensus size: 57
24984084 ACATACATGT
** *
24984094 ATATGGCCCACTTGGCCCAATCTCATTTATATCGCCCATCAGACCCAATTCACATTC
1 ATATGGCCCACTCAGCCCAATCTCATTTATATCGCCCATCAGACCCAAATCACATTC
* * * * *
24984151 ATATGGCCCA-TCAGCCCAAT-TCATATTCATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCACTCAGCCCAATCTCAT-TT-ATATCGCCCATCAGACCCAAATCACATTC
24984208 ATATGGCC
1 ATATGGCC
24984216 TGTTAGGCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
55 4 0.07
56 10 0.18
57 41 0.75
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (57 bp):
ATATGGCCCACTCAGCCCAATCTCATTTATATCGCCCATCAGACCCAAATCACATTC
Found at i:24984221 original size:29 final size:28
Alignment explanation
Indices: 24984093--24984239 Score: 111
Period size: 29 Copynumber: 5.2 Consensus size: 28
24984083 TACATACATG
* *
24984093 TATATGGCCCACTT-GGCCC-AATCTCATT
1 TATATGGCCCA-TTAGGCCCAAATCAC-CT
* * * * *
24984121 TATATCGCCCATCAGACCCAATTCACAT
1 TATATGGCCCATTAGGCCCAAATCACCT
* * **
24984149 TCATATGGCCCATCA-GCCCAATTCATAT
1 T-ATATGGCCCATTAGGCCCAAATCACCT
24984177 TCATATGGCCCATTAGGCCCAAATCACCTT
1 T-ATATGGCCCATTAGGCCCAAATCACC-T
**
24984207 TATATGGCCTGTTAGGCCCAAATCACCT
1 TATATGGCCCATTAGGCCCAAATCACCT
24984235 TATAT
1 TATAT
24984240 TCATGCTCAC
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.01
28 47 0.47
29 49 0.49
30 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAAATCACCT
Found at i:24991610 original size:27 final size:26
Alignment explanation
Indices: 24991552--24991664 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
24991542 AGGAAGCGTC
* * *
24991552 CTGGTGGCTATGCCATAAATTATCTGAT
1 CTGGTGGCTCTGCC--ACATTATCTGTT
24991580 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
24991607 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
24991635 CTGGTGACTCTGTCATATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
24991661 CTGG
1 CTGG
24991665 CAGCAATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.11
27 39 0.51
28 29 0.38
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:24991637 original size:55 final size:54
Alignment explanation
Indices: 24991552--24991664 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
24991542 AGGAAGCGTC
*
24991552 CTGGTGGCTATGCCATAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCATAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* ** * *
24991607 CTGGTGGCTCTGCCA-CGATTATCTGTATCTGGTGACTCTGTCATATTATCTGTT
1 CTGGTGGCTATGCCATAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
24991661 CTGG
1 CTGG
24991665 CAGCAATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 20 0.39
55 31 0.61
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCATAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:24999410 original size:27 final size:26
Alignment explanation
Indices: 24999352--24999460 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 26
24999342 AGGAAGCGTC
* *
24999352 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
24999380 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
24999407 CTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
24999435 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
24999461 TTGGCAACGA
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.04
27 37 0.51
28 32 0.44
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:24999437 original size:55 final size:54
Alignment explanation
Indices: 24999352--24999460 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 54
24999342 AGGAAGCGTC
*
24999352 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
24999407 CTGGTGGCTCTGCCAC-GATTATTTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
24999461 TTGGCAACGA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 15 0.31
55 33 0.69
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:25001252 original size:41 final size:44
Alignment explanation
Indices: 25001152--25001274 Score: 123
Period size: 44 Copynumber: 2.9 Consensus size: 44
25001142 TGCATAAATG
*
25001152 ATTAGCCGAAGCTAT-AACGATATTGCACACTTAGTGCCATCAC
1 ATTAGCCGAAGCTATCAACGATATTGCACACTCAGTGCCATCAC
* * * *
25001195 ATTAAACCGAAACTATCAA-GGTATTGCACACTCAGTGCCA-CAT
1 ATT-AGCCGAAGCTATCAACGATATTGCACACTCAGTGCCATCAC
* * *
25001238 A-TAGCCGAAGCTATC-TCGA-ATCGCACACTGAGTGCCA
1 ATTAGCCGAAGCTATCAACGATATTGCACACTCAGTGCCA
25001275 AACATAGTCG
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
40 16 0.24
41 12 0.18
42 1 0.02
43 6 0.09
44 29 0.44
45 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (44 bp):
ATTAGCCGAAGCTATCAACGATATTGCACACTCAGTGCCATCAC
Found at i:25002931 original size:36 final size:36
Alignment explanation
Indices: 25002891--25002971 Score: 153
Period size: 36 Copynumber: 2.2 Consensus size: 36
25002881 GCAGCATTTC
25002891 GGATCTATTATGATTGATTCAGTTCAATAGCCTTTT
1 GGATCTATTATGATTGATTCAGTTCAATAGCCTTTT
*
25002927 GGATCTATTATGATTGATTCAGTTCAGTAGCCTTTT
1 GGATCTATTATGATTGATTCAGTTCAATAGCCTTTT
25002963 GGATCTATT
1 GGATCTATT
25002972 CTGACTAATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (36 bp):
GGATCTATTATGATTGATTCAGTTCAATAGCCTTTT
Found at i:25004681 original size:42 final size:41
Alignment explanation
Indices: 25004582--25004782 Score: 204
Period size: 42 Copynumber: 4.7 Consensus size: 41
25004572 TCAGAGATAT
* * *
25004582 CGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATAGGCATCGATCT--GA-TTA
* *
25004626 CATGTAAGACCATGTCTGGGACATTGGCATCGTATCTGATTA
1 CGTGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGATTA
* * *
25004668 CGTGTAAGACCATGTCTGGGACATTGGCATTGTATCTGATTT
1 CGTGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGATTA
* * * *
25004710 CGTGTAAGACCCTGTCGGGGACAGAGGCATCGACACTGAATTA
1 CGTGTAAGACCATGTCTGGGACATAGGCATCGA-TCTG-ATTA
* * *
25004753 CATGTAAGACCACGTCTGGGACGTAGGCAT
1 CGTGTAAGACCATGTCTGGGACATAGGCAT
25004783 TGTACTCCAT
Statistics
Matches: 133, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 72 0.54
43 29 0.22
44 28 0.21
45 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGGGACATAGGCATCGATCTGATTA
Found at i:25004770 original size:85 final size:84
Alignment explanation
Indices: 25004584--25004786 Score: 212
Period size: 85 Copynumber: 2.4 Consensus size: 84
25004574 AGAGATATCG
** * * * * *
25004584 TGTAAGACCGTGTCTGGGACATAGGCCTCG-ATTTGAGATTTACATGTAAGACCATGTCTGGGAC
1 TGTAAGACCACGTCTGGGACATAGGCATTGTATCT--GATTT-CGTGTAAGACCATGTCGGGGAC
** * *
25004648 ATTGGCATCGTATCTGATTACG
63 AGAGGCATCGTAACTGATTACA
* * *
25004670 TGTAAGACCATGTCTGGGACATTGGCATTGTATCTGATTTCGTGTAAGACCCTGTCGGGGACAGA
1 TGTAAGACCACGTCTGGGACATAGGCATTGTATCTGATTTCGTGTAAGACCATGTCGGGGACAGA
25004735 GGCATCG-ACACTGAATTACA
66 GGCATCGTA-ACTG-ATTACA
*
25004755 TGTAAGACCACGTCTGGGACGTAGGCATTGTA
1 TGTAAGACCACGTCTGGGACATAGGCATTGTA
25004787 CTCCATTATG
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.01
84 30 0.30
85 39 0.39
86 26 0.26
87 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (84 bp):
TGTAAGACCACGTCTGGGACATAGGCATTGTATCTGATTTCGTGTAAGACCATGTCGGGGACAGA
GGCATCGTAACTGATTACA
Found at i:25006331 original size:79 final size:82
Alignment explanation
Indices: 25006220--25006404 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
25006210 GCTACTCGTT
* * *
25006220 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
25006283 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
25006300 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
25006363 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
25006380 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25006405 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:25006404 original size:40 final size:40
Alignment explanation
Indices: 25006201--25006404 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
25006191 CGGAATTTAA
** *
25006201 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25006241 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
25006281 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25006320 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25006360 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25006400 CCGGA
1 CCGGA
25006405 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25013764 original size:40 final size:39
Alignment explanation
Indices: 25013716--25013844 Score: 145
Period size: 37 Copynumber: 3.3 Consensus size: 39
25013706 GCTACTCGTT
* *
25013716 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGATT-TAGTAACTCACA
* * *
25013756 CAATTGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACA
* * * * *
25013795 CAAATGCCTTC-GG-CTTAGCCCGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACA
25013832 CAAATGCCTTCGG
1 CAAATGCCTTCGG
25013845 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
37 32 0.41
38 3 0.04
39 21 0.27
40 23 0.29
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACA
Found at i:25013830 original size:37 final size:39
Alignment explanation
Indices: 25013716--25013895 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
25013706 GCTACTCGTT
* * *
25013716 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* *
25013756 CAATTGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* *
25013795 CAAATGCCTTC-GG-CTTAGCCCGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* * * * *
25013832 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
25013873 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
25013896 GACATCATTC
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
37 34 0.29
38 2 0.02
39 29 0.25
40 42 0.36
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:25022650 original size:42 final size:42
Alignment explanation
Indices: 25022515--25022707 Score: 156
Period size: 42 Copynumber: 4.5 Consensus size: 42
25022505 ATCAGAGATA
* * * * *
25022515 TCGTGTAAGACCGTGTCTGGGACACAGGCCTTGATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGATCTGA-ATT
* * *
25022558 TACGTGTAAGACCATGTCTGGAACATTGGCCTCGTATCTGAA-T
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGAATT
* * *
25022601 ACATGTAAGACCATGTCTGGGACATTGGCATCGTATCT-AATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGAATT
* * * * *
25022643 TCGTGTAAGACCCTATCGGGGACAGAGGCATCGACACTGAATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGA-TCTGAATT
* * *
25022686 ACATGTAAGACCACGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
25022708 TGTAGGAATT
Statistics
Matches: 121, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
41 3 0.02
42 63 0.52
43 22 0.18
44 28 0.23
45 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCGATCTGAATT
Found at i:25028470 original size:24 final size:23
Alignment explanation
Indices: 25028443--25028497 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
25028433 TTTATTTCAG
25028443 CATACTTAAGTAAAAATATTGAAA
1 CATACTTAA-TAAAAATATTGAAA
*
25028467 CATACTTTTATAAAAATATTGAAA
1 CATAC-TTAATAAAAATATTGAAA
25028491 CATACTT
1 CATACTT
25028498 TTAAATTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 2 0.07
24 24 0.83
25 3 0.10
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (23 bp):
CATACTTAATAAAAATATTGAAA
Found at i:25028498 original size:24 final size:24
Alignment explanation
Indices: 25028453--25028500 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
25028443 CATACTTAAG
25028453 TAAAAATATTGAAACATACTTTTA
1 TAAAAATATTGAAACATACTTTTA
25028477 TAAAAATATTGAAACATACTTTTA
1 TAAAAATATTGAAACATACTTTTA
25028501 AATTCATGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAAAATATTGAAACATACTTTTA
Found at i:25029935 original size:27 final size:27
Alignment explanation
Indices: 25029905--25029987 Score: 139
Period size: 27 Copynumber: 3.1 Consensus size: 27
25029895 CTCGATTTAA
*
25029905 AGAATTACTGAAATACCCCTGTAAGGT
1 AGAATTACTGAAATACCCCTGTAGGGT
*
25029932 AGAATTACCGAAATACCCCTGTAGGGT
1 AGAATTACTGAAATACCCCTGTAGGGT
*
25029959 AGAATTACTAAAATACCCCTGTAGGGT
1 AGAATTACTGAAATACCCCTGTAGGGT
25029986 AG
1 AG
25029988 GACTACCAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AGAATTACTGAAATACCCCTGTAGGGT
Found at i:25030002 original size:27 final size:26
Alignment explanation
Indices: 25029905--25030013 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 26
25029895 CTCGATTTAA
* *
25029905 AGAATTACTGAAATACCCCTGTAAGGT
1 AGAATTAC-CAAATACCCCTGTAGGGT
25029932 AGAATTACCGAAATACCCCTGTAGGGT
1 AGAATTACC-AAATACCCCTGTAGGGT
*
25029959 AGAATTACTAAAATACCCCTGTAGGGT
1 AGAATTAC-CAAATACCCCTGTAGGGT
* * *
25029986 AGGACTACCAATTTACCCCTAG-AGGGT
1 AGAATTACCAA-ATACCCCT-GTAGGGT
25030013 A
1 A
25030014 AAATGACTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 2 0.03
27 68 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (26 bp):
AGAATTACCAAATACCCCTGTAGGGT
Found at i:25030003 original size:54 final size:54
Alignment explanation
Indices: 25029905--25030022 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
25029895 CTCGATTTAA
* *
25029905 AGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCT-GTAGGGT
1 AGAATTACTAAAATACCCCTGTAAGGTAGAACTACCGAAATACCCCTAG-AGGGT
* * *
25029959 AGAATTACTAAAATACCCCTGTAGGGTAGGACTACC-AATTTACCCCTAGAGGGT
1 AGAATTACTAAAATACCCCTGTAAGGTAGAACTACCGAA-ATACCCCTAGAGGGT
* *
25030013 AAAATGACTA
1 AGAATTACTA
25030023 TTTTGCCCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.04
54 52 0.95
55 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (54 bp):
AGAATTACTAAAATACCCCTGTAAGGTAGAACTACCGAAATACCCCTAGAGGGT
Found at i:25030763 original size:26 final size:27
Alignment explanation
Indices: 25030734--25030793 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
25030724 CCACATATAT
*
25030734 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
25030760 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
25030787 ATATCTG
1 ATATCTG
25030794 CCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:25032535 original size:38 final size:38
Alignment explanation
Indices: 25032475--25032604 Score: 127
Period size: 38 Copynumber: 3.4 Consensus size: 38
25032465 CTAAGCACGA
* *
25032475 AGCCTGAATAACACCAGTACAAAGACTACTAGGCATAG
1 AGCCTGAATAACACCAGCACAAAGACTACTAGGCACAG
* * * *
25032513 AGCCTGAATATCATCAGCACAAAGCCTATTAGGCACAG
1 AGCCTGAATAACACCAGCACAAAGACTACTAGGCACAG
** * * *
25032551 AGCCCAAATAACACCGACACACAAAGCCTACTAGGCAGAG
1 AGCCTGAATAACACC-A-GCACAAAGACTACTAGGCACAG
25032591 AG-CTCGAATAACAC
1 AGCCT-GAATAACAC
25032605 TGAGTTTCTA
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
38 43 0.58
39 2 0.03
40 29 0.39
ACGTcount: A:0.41, C:0.28, G:0.18, T:0.14
Consensus pattern (38 bp):
AGCCTGAATAACACCAGCACAAAGACTACTAGGCACAG
Found at i:25035555 original size:26 final size:26
Alignment explanation
Indices: 25035525--25035582 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
25035515 TCATGCGGTG
25035525 GTACTTAGCCAACCCTAGAAAGCTTC
1 GTACTTAGCCAACCCTAGAAAGCTTC
* * * *
25035551 GTACTTGGCCGACCTTAGAAAGCTTT
1 GTACTTAGCCAACCCTAGAAAGCTTC
25035577 GTACTT
1 GTACTT
25035583 CAGATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (26 bp):
GTACTTAGCCAACCCTAGAAAGCTTC
Found at i:25037918 original size:121 final size:121
Alignment explanation
Indices: 25037704--25037947 Score: 427
Period size: 121 Copynumber: 2.0 Consensus size: 121
25037694 GGTAAATTTA
* *
25037704 AGTTAATATTATTAAAACAAAGGTTAAAAATTCATTTGGTTCATTCATCTTCCACGAAAAATAGA
1 AGTTAATATTATTAAAACAAAAGTTAAAAATTCATTTGGTTCATTCATCTTCCACCAAAAATAGA
* * *
25037769 AAGAAAAGATAGGGTTTAAGTGTTTGAAGCATTTGGCCATGGTCCAAGCTTGATTG
66 AAGAAAAGATAGGGTTTAACTGCTTGAAGCATTTGACCATGGTCCAAGCTTGATTG
25037825 AGTTAATATTATTAAAACAAAAGTTAAAAATTCATTTGGTTCATTCATCTTCCACCAAAAATA-A
1 AGTTAATATTATTAAAACAAAAGTTAAAAATTCATTTGGTTCATTCATCTTCCACCAAAAATAGA
25037889 AATGAAAAGATAGGGTTTAACTGCTTGAAGCATTTGACCATGGTCCAAGCTTGATTG
66 AA-GAAAAGATAGGGTTTAACTGCTTGAAGCATTTGACCATGGTCCAAGCTTGATTG
25037946 AG
1 AG
25037948 GTATGTGTTT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
120 3 0.03
121 114 0.97
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (121 bp):
AGTTAATATTATTAAAACAAAAGTTAAAAATTCATTTGGTTCATTCATCTTCCACCAAAAATAGA
AAGAAAAGATAGGGTTTAACTGCTTGAAGCATTTGACCATGGTCCAAGCTTGATTG
Found at i:25052848 original size:39 final size:39
Alignment explanation
Indices: 25052821--25052979 Score: 228
Period size: 39 Copynumber: 4.1 Consensus size: 39
25052811 TGTCCAGCAC
*
25052821 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
25052860 ATAGCCTGCCGACATAAAGTCCAGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* * * *
25052899 ATAGCCTGCAGACATGAAGTCCGAATATAATTCTCGCTT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* * *
25052938 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
25052977 ATA
1 ATA
25052980 TATATTCACA
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (39 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
Found at i:25058197 original size:13 final size:11
Alignment explanation
Indices: 25058156--25058192 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
25058146 TGATTTTATC
25058156 AAAAAATCAG-
1 AAAAAATCAGA
25058166 -AAAAAT-AGA
1 AAAAAATCAGA
25058175 AAAAAATCAGA
1 AAAAAATCAGA
25058186 AAAAAAT
1 AAAAAAT
25058193 TTCAGCATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 2 0.08
9 6 0.25
10 6 0.25
11 10 0.42
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (11 bp):
AAAAAATCAGA
Found at i:25060267 original size:6 final size:6
Alignment explanation
Indices: 25060256--25060303 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
25060246 AAGATAATAT
*
25060256 AGAAAA AGAAAA AGAACA AGAAAA A-AAAGA GAGAAAA AGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA-A -AGAAAA AGAAAA AGAAA
25060304 GAAAATCGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 3 0.08
6 29 0.78
7 2 0.05
8 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:25060316 original size:17 final size:16
Alignment explanation
Indices: 25060256--25060308 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
25060246 AAGATAATAT
25060256 AGAAAAAGAAAAAGAA
1 AGAAAAAGAAAAAGAA
* *
25060272 CA-AGAAA-AAAAAGAG
1 -AGAAAAAGAAAAAGAA
25060287 AGAAAAAGAAAAAGAA
1 AGAAAAAGAAAAAGAA
25060303 AGAAAA
1 AGAAAA
25060309 TCGAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.03
15 11 0.37
16 17 0.57
17 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (16 bp):
AGAAAAAGAAAAAGAA
Found at i:25060317 original size:25 final size:25
Alignment explanation
Indices: 25060264--25060318 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
25060254 ATAGAAAAAG
* *
25060264 AAAAAGAACAAGAAAAAAAAGAGAG
1 AAAAAGAAAAAGAAAAAAAAGAGAA
* **
25060289 AAAAAGAAAAAGAAAGAAAATCGAA
1 AAAAAGAAAAAGAAAAAAAAGAGAA
25060314 AAAAA
1 AAAAA
25060319 TAAAGGAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAAGAAAAAGAAAAAAAAGAGAA
Found at i:25060947 original size:17 final size:18
Alignment explanation
Indices: 25060925--25060958 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25060915 CACATTGAAG
25060925 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
25060942 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
25060959 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:25064670 original size:150 final size:150
Alignment explanation
Indices: 25064487--25064786 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
25064477 TCACATGCCA
*
25064487 ACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCTAACACATTAAACTTTAA
1 ACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTTTAA
25064552 AGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATTCCAAGAGCTAAGAC
66 AGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATTCCAAGAGCTAAGAC
25064617 TTGAACCTTGGACCCCTTGC
131 TTGAACCTTGGACCCCTTGC
25064637 ACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTTTAA
1 ACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTTTAA
25064702 AGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATTCCAAGAGCTAAGAC
66 AGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATTCCAAGAGCTAAGAC
25064767 TTGAACCTTGGACCCCTTGC
131 TTGAACCTTGGACCCCTTGC
25064787 TTCCTCTATG
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (150 bp):
ACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTTTAA
AGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATTCCAAGAGCTAAGAC
TTGAACCTTGGACCCCTTGC
Found at i:25073574 original size:21 final size:21
Alignment explanation
Indices: 25073550--25073591 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25073540 TCATCAGATC
*
25073550 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
25073571 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
25073592 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:25076900 original size:40 final size:40
Alignment explanation
Indices: 25076840--25077023 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
25076830 TATTCGAATG
*
25076840 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
25076880 ATATCCGGACTAAGATCCGAAGGCACTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
25076920 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
25076960 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
25077000 AAATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
25077024 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:25076973 original size:80 final size:80
Alignment explanation
Indices: 25076840--25077023 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
25076830 TATTCGAATG
* * *
25076840 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
25076904 ACTTGTGCGAGTTG-CT
65 ACTTATGCGAG-TGACC
* *
25076920 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* *
25076985 TTTATGCTAGTGACC
66 CTTATGCGAGTGACC
*
25077000 AAATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
25077024 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
CTTATGCGAGTGACC
Found at i:25079179 original size:30 final size:30
Alignment explanation
Indices: 25079134--25079193 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25079124 ATTTAATACG
25079134 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
25079164 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
25079194 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:25084599 original size:27 final size:26
Alignment explanation
Indices: 25084551--25084602 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
25084541 GCGAGGCTGC
*
25084551 CAGATATTGTGACGAAGTCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
* *
25084577 CAGATATCTGTGGCGAGGCCACCAAA
1 CAGATAT-TGTGACGAAGCCACCAAA
25084603 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:25085507 original size:20 final size:20
Alignment explanation
Indices: 25085479--25085519 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
25085469 AAAGCGAAAG
*
25085479 GGATCAGCCAAGAAGGGTAT
1 GGATAAGCCAAGAAGGGTAT
25085499 GGATAAGCCAAGAAGGGTAT
1 GGATAAGCCAAGAAGGGTAT
25085519 G
1 G
25085520 CTTACTCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.37, T:0.15
Consensus pattern (20 bp):
GGATAAGCCAAGAAGGGTAT
Found at i:25087555 original size:29 final size:29
Alignment explanation
Indices: 25087483--25087606 Score: 151
Period size: 29 Copynumber: 4.3 Consensus size: 29
25087473 AAGTCTACAT
* * *
25087483 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATACGGCCCATTAGGCCCAAATC
* **
25087511 TCATTCATATAGCCCATTAGGCCCAAATC
1 ACATTCATACGGCCCATTAGGCCCAAATC
* * * *
25087540 AAATTCGTATGTCCCATTAGGCCCAAATC
1 ACATTCATACGGCCCATTAGGCCCAAATC
25087569 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATACGGCCCATTAGGCCCAAATC
25087598 ACATTCATA
1 ACATTCATA
25087607 TACATGCTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 20 0.24
29 62 0.76
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATACGGCCCATTAGGCCCAAATC
Found at i:25091887 original size:25 final size:25
Alignment explanation
Indices: 25091859--25091915 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
25091849 TAAGTTTAAA
25091859 CTGAAAATACTATAGATAGTATATT
1 CTGAAAATACTATAGATAGTATATT
* * * *
25091884 CTGATACTACTGTAGGTAGTATATT
1 CTGAAAATACTATAGATAGTATATT
*
25091909 GTGAAAA
1 CTGAAAA
25091916 CACTTTAGTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (25 bp):
CTGAAAATACTATAGATAGTATATT
Found at i:25091928 original size:25 final size:25
Alignment explanation
Indices: 25091859--25091928 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
25091849 TAAGTTTAAA
*
25091859 CTGAAAATACTATAGATAGTATATT
1 CTGAAAACACTATAGATAGTATATT
* * *
25091884 CTG-ATACTACTGTAGGTAGTATATT
1 CTGAAAAC-ACTATAGATAGTATATT
* * *
25091909 GTGAAAACACTTTAGTTAGT
1 CTGAAAACACTATAGATAGT
25091929 GTACCCTGAG
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
24 2 0.06
25 30 0.86
26 3 0.09
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (25 bp):
CTGAAAACACTATAGATAGTATATT
Found at i:25096137 original size:27 final size:27
Alignment explanation
Indices: 25096105--25096156 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
25096095 GTCATACATA
25096105 TCATAGGGGTAT-ATCAGTCATTTCAGC
1 TCATAGGGGTATAAT-AGTCATTTCAGC
25096132 TCATAGGGGTATAATAGTCATTTCA
1 TCATAGGGGTATAATAGTCATTTCA
25096157 TCAAATTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (27 bp):
TCATAGGGGTATAATAGTCATTTCAGC
Found at i:25102628 original size:9 final size:9
Alignment explanation
Indices: 25102614--25102650 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
25102604 ACAAAAGCCG
25102614 AAATGCCAA
1 AAATGCCAA
25102623 AAATGCCAA
1 AAATGCCAA
*
25102632 AAA-GCC-G
1 AAATGCCAA
25102639 AAATGCCAA
1 AAATGCCAA
25102648 AAA
1 AAA
25102651 GCTGAAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 3 0.12
8 6 0.25
9 15 0.62
ACGTcount: A:0.57, C:0.22, G:0.14, T:0.08
Consensus pattern (9 bp):
AAATGCCAA
Found at i:25102642 original size:16 final size:16
Alignment explanation
Indices: 25102623--25102657 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
25102613 GAAATGCCAA
25102623 AAATGCCAAAAAGCCG
1 AAATGCCAAAAAGCCG
*
25102639 AAATGCCAAAAAGCTG
1 AAATGCCAAAAAGCCG
25102655 AAA
1 AAA
25102658 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.20, G:0.17, T:0.09
Consensus pattern (16 bp):
AAATGCCAAAAAGCCG
Found at i:25102960 original size:28 final size:29
Alignment explanation
Indices: 25102850--25102964 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
25102840 GTGAGCATGA
* *
25102850 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
25102878 ATATAAATGTGATTTGGGCCTAATTGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
25102907 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
25102936 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
25102964 A
1 A
25102965 GATATAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:25107694 original size:45 final size:44
Alignment explanation
Indices: 25107543--25107698 Score: 192
Period size: 45 Copynumber: 3.5 Consensus size: 44
25107533 GCATTTTGCC
* *
25107543 TGCTAGGCTCGAAGCCCG-ATA-TCATTTCACC-GACATTATAGCT
1 TGCTAGGCTCAAAGCCCGAATAGT-ATCTCACCAG-CATTATAGCT
* * *
25107586 TGCTAGGCTCTAAAGCCCAAATAGTATCTCACCGGCATTATAGCC
1 TGCTAGGCTC-AAAGCCCGAATAGTATCTCACCAGCATTATAGCT
25107631 TGCTAGGCTCAAAAGCCCGAATAGTATCTCACCAGCATTATAGCT
1 TGCTAGGCTC-AAAGCCCGAATAGTATCTCACCAGCATTATAGCT
*
25107676 TGCTAGGCTCAAGGGCCCGAATA
1 TGCTAGGCTCAA-AGCCCGAATA
25107699 ATACTGTGCA
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
43 10 0.10
44 8 0.08
45 79 0.80
46 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (44 bp):
TGCTAGGCTCAAAGCCCGAATAGTATCTCACCAGCATTATAGCT
Found at i:25108545 original size:47 final size:46
Alignment explanation
Indices: 25108486--25108580 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 46
25108476 AAGATTTTCT
* * *
25108486 TTAACTAAGTAACTTATCTGGAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATAATAAGAG-AAATTTAACAAGC
* *
25108533 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATAATAAGAGAAATTTAACAAGC
25108579 TT
1 TT
25108581 TAAATTCAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 14 0.33
47 29 0.67
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGAAAATAATAAGAGAAATTTAACAAGC
Found at i:25110251 original size:32 final size:32
Alignment explanation
Indices: 25110215--25110279 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
25110205 AACCCATCAT
* *
25110215 AATATCAATTGGGCCTGGCCCATCTCAGAATC
1 AATATCAATTGGGCCTAGCCCATATCAGAATC
*
25110247 AATATCAGTTGGGCCTAGCCCATATCAGAATC
1 AATATCAATTGGGCCTAGCCCATATCAGAATC
25110279 A
1 A
25110280 GACTCATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (32 bp):
AATATCAATTGGGCCTAGCCCATATCAGAATC
Found at i:25110620 original size:27 final size:27
Alignment explanation
Indices: 25110585--25110651 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
25110575 CGAGGGCAAA
* * *
25110585 CAGTCATTTTACCCTACAGGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
* *
25110612 CGGTAATTTTACATTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
25110639 TAGTAATTTTACA
1 CAGTAATTTTACA
25110652 AACCGAGGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:25125269 original size:21 final size:21
Alignment explanation
Indices: 25125232--25125271 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
25125222 AATCATTAAA
*
25125232 TTGATGTTATGATATGTGTCT
1 TTGATGTTATGAAATGTGTCT
25125253 TTGATGTGTAT-AAATGTGT
1 TTGATGT-TATGAAATGTGT
25125272 GAGGGATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGATGTTATGAAATGTGTCT
Found at i:25127305 original size:48 final size:48
Alignment explanation
Indices: 25127054--25127320 Score: 255
Period size: 48 Copynumber: 5.6 Consensus size: 48
25127044 ACATTTGAGT
* * * * *
25127054 GATATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * * ** *
25127102 GATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATAGTATAAGCCAC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * *
25127150 AACATGAGAGCCAGGGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
25127198 GATGTGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** *
25127246 CTTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
25127294 GACAAGTGAGCCAGTGTTAGACCATGT
1 GATATGTGAGCCAGTGTAAGACCATGT
25127321 TTAGCATCGA
Statistics
Matches: 169, Mismatches: 50, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 169 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:25127320 original size:96 final size:96
Alignment explanation
Indices: 25127055--25127290 Score: 366
Period size: 96 Copynumber: 2.5 Consensus size: 96
25127045 CATTTGAGTG
* *
25127055 ATATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATGTGTGTGCTAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGTGTGCTAGTGTA
* *
25127120 AGACCATGTTTGGGACATAGTATAAGCCACA
66 AGACCATGTCTGGGACATAGCATAAGCCACA
* *
25127151 ACATGAGAGCCAGGGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGTGTGCTAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGTGTGCTAGTGTA
* * *
25127216 AGACCATGTCTGGGACATGGCAT-CGACCACC
66 AGACCATGTCTGGGACATAGCATAAG-CCACA
*
25127247 TTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
25127291 CTCGACAAGT
Statistics
Matches: 127, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
95 1 0.01
96 126 0.99
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (96 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGTGTGCTAGTGTA
AGACCATGTCTGGGACATAGCATAAGCCACA
Found at i:25152475 original size:16 final size:15
Alignment explanation
Indices: 25152451--25152480 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25152441 AAATATTTTA
25152451 TTACAAATTTCACTC
1 TTACAAATTTCACTC
25152466 TTACATAATTTCACT
1 TTACA-AATTTCACT
25152481 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:25152810 original size:50 final size:50
Alignment explanation
Indices: 25152692--25152973 Score: 291
Period size: 50 Copynumber: 5.6 Consensus size: 50
25152682 CTGGTACGCA
* *
25152692 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACAAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GATACACG
*
25152741 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * *** * * *
25152791 TAGTAGCCTGGACTTAGTACTACACATGTGATCGAAGTTGTCGGGA-ACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATC-TGATACACG
* * * *
25152842 AAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * * *
25152892 TAGTAGCCTGCACTTATTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGATACACG
* *
25152944 TAGTAGCCTACACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
25152974 TTCTCACAAT
Statistics
Matches: 189, Mismatches: 37, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
49 33 0.17
50 80 0.42
51 37 0.20
52 39 0.21
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
Found at i:25152884 original size:101 final size:99
Alignment explanation
Indices: 25152678--25152924 Score: 318
Period size: 101 Copynumber: 2.5 Consensus size: 99
25152668 GTAACCGAAG
* * * *
25152678 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATTCGGTACACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATTCGGGACACGAA
*
25152743 GTAGCCTGCACTTAGTACTACACACGTGACCTAA
66 GTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * **
25152777 CCATCTGATACACGTAGTAGCCTGGACTTAGTACTACACATGTGATCGAA-GTTGTCGGGA-ACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAACAAT-TCGGGACACG
*
25152840 CAAAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
64 --AAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* *
25152878 CTATCTGGTACACGTAGTAGCCTGCACTTATTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
25152925 TAAAACCATC
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
99 44 0.35
100 9 0.07
101 73 0.58
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATTCGGGACACGAA
GTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:25155285 original size:15 final size:13
Alignment explanation
Indices: 25155252--25155290 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
25155242 CTTTTTGTAC
25155252 ATATATAAAATTA
1 ATATATAAAATTA
*
25155265 ATATATGAAATTA
1 ATATATAAAATTA
25155278 ATTCATATAAAAT
1 A-T-ATATAAAAT
25155291 ATTAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 13 0.59
14 1 0.05
15 8 0.36
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (13 bp):
ATATATAAAATTA
Found at i:25162587 original size:28 final size:28
Alignment explanation
Indices: 25162511--25162581 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
25162501 TATATATGTA
* *
25162511 TATGGCACTTAGTGTGCAAAATATTAAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
* * *
25162539 AATGGCACTTGGTGTGCGAGATATTGAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
25162567 TATGGCACTTAGTGT
1 TATGGCACTTAGTGT
25162582 ATGAGACATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.32
Consensus pattern (28 bp):
TATGGCACTTAGTGTGCGAGATATTAAG
Found at i:25166435 original size:27 final size:26
Alignment explanation
Indices: 25166390--25166442 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
25166380 TAGGTAGTAC
*
25166390 TTCTGGTGGCCTCGCCACATATATCTG
1 TTCTGGTGACCTCGCCACA-ATATCTG
* *
25166417 TTCTGGTGACTTCGTCACAATATCTG
1 TTCTGGTGACCTCGCCACAATATCTG
25166443 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGACCTCGCCACAATATCTG
Found at i:25167358 original size:42 final size:41
Alignment explanation
Indices: 25167298--25167592 Score: 195
Period size: 42 Copynumber: 6.8 Consensus size: 41
25167288 TCGTAATAGC
25167298 GTGTAAGACCATGA-CTGGGACATGGCATCAATATGAGATCTT
1 GTGTAAGACCAT-ATCTGGGACATGGCATCAATATGAGAT-TT
*
25167340 GTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTT
1 GTGTAAGACCATATCTGGGACATGGCAT---CA---ATATGAGAT-TT
* * * *
25167388 GTGTTAGACCATATCTGGGATATGACATCAACTTCGATATGAGATTAC
1 GTGTAAGACCATATCTGGGACATGGCATC-A-----ATATGAGATT-T
* * *
25167436 GTGTAAGACCATATCTGGGATATGGCTTCGATATGAGATTT
1 GTGTAAGACCATATCTGGGACATGGCATCAATATGAGATTT
* * * * *
25167477 CATGTAAGACCGTGTCTAGG--ATGCGACATCAATATGTGATTT
1 -GTGTAAGACCATATCTGGGACATG-G-CATCAATATGAGATTT
* * * *
25167519 CGTATAAGACCATGTCTGGGACATGGCATCGATGTGAGACTTT
1 -GTGTAAGACCATATCTGGGACATGGCATCAATATGAGA-TTT
25167562 GTGTAAGACCATAGT-T-GGACTATGGCATCAA
1 GTGTAAGACCATA-TCTGGGAC-ATGGCATCAA
25167593 GTAAACACGT
Statistics
Matches: 208, Mismatches: 26, Indels: 38
0.76 0.10 0.14
Matches are distributed among these distances:
40 3 0.01
41 6 0.03
42 110 0.53
43 5 0.02
44 3 0.01
45 3 0.01
46 1 0.00
47 1 0.00
48 76 0.37
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGACATGGCATCAATATGAGATTT
Found at i:25167397 original size:48 final size:48
Alignment explanation
Indices: 25167322--25167461 Score: 210
Period size: 48 Copynumber: 2.9 Consensus size: 48
25167312 CTGGGACATG
*
25167322 GCATCAATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* *
25167370 GCATCGATATGAGATCTTGTGTTAGACCATATCTGGGATATGACATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* * *
25167418 ACTTCGATATGAGAT-TACGTGTAAGACCATATCTGGGATATGGC
1 GCATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATATGGC
25167462 TTCGATATGA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.01
48 82 0.99
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
Found at i:25171270 original size:28 final size:28
Alignment explanation
Indices: 25171200--25171282 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 28
25171190 TATATATGTA
* * * *
25171200 TATGGCACTTAGTGTGCAAAATATTAAG
1 TATGACACTTAGTGTGCGAGATATTGAG
* * *
25171228 AATGACATTTGGTGTGCGAGATATTGAG
1 TATGACACTTAGTGTGCGAGATATTGAG
* * *
25171256 TATGTCACTTAGTGTACGAGACATTGA
1 TATGACACTTAGTGTGCGAGATATTGA
25171283 AGATGCAATG
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
TATGACACTTAGTGTGCGAGATATTGAG
Found at i:25179762 original size:38 final size:38
Alignment explanation
Indices: 25179711--25179866 Score: 134
Period size: 38 Copynumber: 3.9 Consensus size: 38
25179701 AGAATGAAAA
*
25179711 AACGTGGTGCTAAGTAGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
* * *
25179749 AACGTGGTGCTAAGTGGAT-TGCCACAGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCAC-GGT---TATA-CG--T--GT
* * * *
25179795 AACGTGCTGCTAAGTGGATATACCATGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
* *
25179833 AACGTGGTGGTAAGTGGATATGCCACGGTTATAC
1 AACGTGGTGCTAAGTGGATATACCACGGTTATAC
25179867 ATGTTAATTT
Statistics
Matches: 92, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
37 5 0.05
38 50 0.54
40 1 0.01
41 4 0.04
42 3 0.03
43 3 0.03
44 1 0.01
46 21 0.23
47 4 0.04
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
Found at i:25179891 original size:84 final size:84
Alignment explanation
Indices: 25179709--25179894 Score: 193
Period size: 84 Copynumber: 2.2 Consensus size: 84
25179699 TCAGAATGAA
* * * *
25179709 AAAACGTGGTGCTAAGTAGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATTGCCAC
1 AAAA-GTGGCGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATTGCCAC
* *
25179774 AGTTACATATATCGATTCATT
65 AGTTA-ATACATCGATTAATT
* * *
25179795 -AACGT-GCTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGGTAAGTGGATATGCCA
1 AAAAGTGGC-GCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGAT-TGCCA
*
25179858 CGGTT-ATACAT-G-TTAATTT
64 CAGTTAATACATCGATTAA-TT
25179877 GAAAAGTGGCGCTAAGTG
1 -AAAAGTGGCGCTAAGTG
25179895 TTATGCCACA
Statistics
Matches: 83, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
81 3 0.04
82 3 0.04
83 6 0.07
84 58 0.70
85 13 0.16
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (84 bp):
AAAAGTGGCGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATTGCCACA
GTTAATACATCGATTAATT
Found at i:25196360 original size:21 final size:21
Alignment explanation
Indices: 25196334--25196373 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
25196324 ATTCAGTCGA
25196334 AAAAAAATATAAACTAAATCG
1 AAAAAAATATAAACTAAATCG
25196355 AAAAAAATATAAACTAAAT
1 AAAAAAATATAAACTAAAT
25196374 TGTAAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (21 bp):
AAAAAAATATAAACTAAATCG
Found at i:25196507 original size:22 final size:22
Alignment explanation
Indices: 25196482--25196526 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25196472 AAAATTTCAC
25196482 TGTTTTGCTGTTATTTTAATAT
1 TGTTTTGCTGTTATTTTAATAT
* *
25196504 TGTTTTGTTGTTATTTTACTAT
1 TGTTTTGCTGTTATTTTAATAT
25196526 T
1 T
25196527 ATATTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.04, G:0.13, T:0.67
Consensus pattern (22 bp):
TGTTTTGCTGTTATTTTAATAT
Found at i:25196543 original size:33 final size:33
Alignment explanation
Indices: 25196492--25196594 Score: 98
Period size: 36 Copynumber: 3.0 Consensus size: 33
25196482 TGTTTTGCTG
* * *
25196492 TTATTTTAATATTGTTTTGTTGTTATTTTACTA
1 TTATATTACTATTGTTTTGTTATTATTTTACTA
* *
25196525 TTATATTACTATTGTTTTGTTTTTATTGTTTAGATA
1 TTATATTACTATTGTTTTGTTATTA-T-TTTA-CTA
* * *
25196561 TTATATAACTTTTGTTTTATTATTAATTTTACTA
1 TTATATTACTATTGTTTTGTTATT-ATTTTACTA
25196595 CTATTTTATA
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
33 22 0.39
34 3 0.05
35 8 0.14
36 23 0.40
37 1 0.02
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (33 bp):
TTATATTACTATTGTTTTGTTATTATTTTACTA
Found at i:25200407 original size:14 final size:14
Alignment explanation
Indices: 25200386--25200426 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
25200376 TTGCACCTTG
25200386 CACAACTTGCACAT
1 CACAACTTGCACAT
** *
25200400 TGCAACTTGCAAAT
1 CACAACTTGCACAT
25200414 CACAACTTGCACA
1 CACAACTTGCACA
25200427 ATTAGGAAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (14 bp):
CACAACTTGCACAT
Found at i:25202871 original size:13 final size:13
Alignment explanation
Indices: 25202853--25202877 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25202843 GTATACTCAG
25202853 TCCCATTATTAGA
1 TCCCATTATTAGA
25202866 TCCCATTATTAG
1 TCCCATTATTAG
25202878 GCATTACGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (13 bp):
TCCCATTATTAGA
Found at i:25206661 original size:14 final size:14
Alignment explanation
Indices: 25206640--25206680 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
25206630 TTGCTACTTG
25206640 CACAACTTGCACAT
1 CACAACTTGCACAT
** *
25206654 TGCAACTTGCAAAT
1 CACAACTTGCACAT
25206668 CACAACTTGCACA
1 CACAACTTGCACA
25206681 ATTAGGTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (14 bp):
CACAACTTGCACAT
Found at i:25208608 original size:23 final size:23
Alignment explanation
Indices: 25208578--25208626 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
25208568 ATACAAGGAA
25208578 TAATTGCTTGCTTAAGATAGATT
1 TAATTGCTTGCTTAAGATAGATT
25208601 TAATTGCTTGCTTAAGATAGATT
1 TAATTGCTTGCTTAAGATAGATT
25208624 TAA
1 TAA
25208627 CTCAATTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (23 bp):
TAATTGCTTGCTTAAGATAGATT
Found at i:25213274 original size:17 final size:16
Alignment explanation
Indices: 25213236--25213280 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
25213226 ACTAGAAAAG
25213236 TGCGAGCTCACCAAGA
1 TGCGAGCTCACCAAGA
25213252 TCGCGAGCTCACC-AGCA
1 T-GCGAGCTCACCAAG-A
25213269 CTGCGAGCTCAC
1 -TGCGAGCTCAC
25213281 TAAACTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 3 0.12
17 22 0.85
18 1 0.04
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.13
Consensus pattern (16 bp):
TGCGAGCTCACCAAGA
Found at i:25219561 original size:19 final size:20
Alignment explanation
Indices: 25219521--25219565 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
25219511 GCATAATAGA
*
25219521 GGCACCAAAGTGCAGACAAG
1 GGCACCAAAGTGCAAACAAG
*
25219541 GGCA-CAAATGTGCAAACAGG
1 GGCACCAAA-GTGCAAACAAG
25219561 GGCAC
1 GGCAC
25219566 TGTAGTGCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.38, C:0.24, G:0.31, T:0.07
Consensus pattern (20 bp):
GGCACCAAAGTGCAAACAAG
Found at i:25219941 original size:27 final size:27
Alignment explanation
Indices: 25219903--25219956 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
25219893 CATCTCATAA
25219903 ATATTCAATAGTTTTCTAATAAATCCT
1 ATATTCAATAGTTTTCTAATAAATCCT
25219930 ATATTCAATAGTTTTCTAATAAATCCT
1 ATATTCAATAGTTTTCTAATAAATCCT
25219957 TTCTCAGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (27 bp):
ATATTCAATAGTTTTCTAATAAATCCT
Found at i:25224711 original size:65 final size:66
Alignment explanation
Indices: 25224639--25224774 Score: 174
Period size: 65 Copynumber: 2.1 Consensus size: 66
25224629 TACTTTGTTT
* * *
25224639 TTATTCTTTGTAT-CAAGAAAA-TAAACATA-TTTAAAATAACATAAATATGCCAAAATAACACC
1 TTATTCTTT-TATGCAAGAAAACAAAACATACTTAAAAACAACATAAA-ATGCCAAAATAACACC
25224701 AAC
64 AAC
* *
25224704 TTATTC-TTTATGCAAGAAAACAAAACATACTTAAAAACAACATAAAATGCTAAAATAAGACCAA
1 TTATTCTTTTATGCAAGAAAACAAAACATACTTAAAAACAACATAAAATGCCAAAATAACACCAA
25224768 C
66 C
25224769 TT-TTCT
1 TTATTCT
25224775 AATGATTCTC
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
63 3 0.05
64 13 0.21
65 32 0.52
66 14 0.23
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (66 bp):
TTATTCTTTTATGCAAGAAAACAAAACATACTTAAAAACAACATAAAATGCCAAAATAACACCAA
C
Found at i:25228216 original size:42 final size:42
Alignment explanation
Indices: 25228164--25228286 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
25228154 CTTAGTACCG
* * * *
25228164 TATCAATGCCATACCCCGGATATGGTCTTACATGAAAT-ATCA
1 TATCGATGCCATATCCCAGATATGGTCTTACACGAAATCA-CA
* * *
25228206 TATCGATGCCATATCCCTGACATGGTCTTATACGAAATCACA
1 TATCGATGCCATATCCCAGATATGGTCTTACACGAAATCACA
* *
25228248 TA-CTGATGCCATATCCCAGATATGGTCTTATACGGAATC
1 TATC-GATGCCATATCCCAGATATGGTCTTACACGAAATC
25228287 TCGATAGTAC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.97
43 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACACGAAATCACA
Found at i:25235563 original size:125 final size:125
Alignment explanation
Indices: 25235297--25235571 Score: 406
Period size: 125 Copynumber: 2.2 Consensus size: 125
25235287 CGTCTGTGAC
**
25235297 ACACGGCCTAGCACATGGGCATGTGGTTTGGTCGTGTGTCCCTTGCAACTTAAATTTGAGAAACA
1 ACACGGCCTAGCACATGGGCATGTGGTTTGGTCACGTGTCCCTTGCAACTTAAATTTGAGAAACA
* * * * * *
25235362 GAATGCTCAGAATTGAGCATACGGGCAAAGACATGAGCGTGTGTCTCAGCCATGTGTGCT
66 GAATGCTCAGAATTGAGCACACAGACAAAGACACGAGCGTGTGTCTCAACCATGTGTACT
* * *
25235422 ACACAGCTTAGCACATGGGCATGTGGTTTGGTCACGTGTCCCTTGCAACTTAAATTTGAGAAATA
1 ACACGGCCTAGCACATGGGCATGTGGTTTGGTCACGTGTCCCTTGCAACTTAAATTTGAGAAACA
*
25235487 GAATGCTCAGAATTGAGCACACAGACAAAGACACGGGCGTGTGTCTCAACCATGTGTACT
66 GAATGCTCAGAATTGAGCACACAGACAAAGACACGAGCGTGTGTCTCAACCATGTGTACT
* * * *
25235547 ACTCGGCCCAGAACATGAGCATGTG
1 ACACGGCCTAGCACATGGGCATGTG
25235572 TCTTGGCCGT
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
125 132 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (125 bp):
ACACGGCCTAGCACATGGGCATGTGGTTTGGTCACGTGTCCCTTGCAACTTAAATTTGAGAAACA
GAATGCTCAGAATTGAGCACACAGACAAAGACACGAGCGTGTGTCTCAACCATGTGTACT
Found at i:25240310 original size:24 final size:24
Alignment explanation
Indices: 25240278--25240424 Score: 215
Period size: 24 Copynumber: 6.2 Consensus size: 24
25240268 GCCTAGCCTA
*
25240278 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
25240302 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* * *
25240326 TTTTGATAA-TTGGGCAGAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
25240349 TTTTAATAACTGGGGCATAAGCAC
1 TTTTAATAACTGGGGCATAAGCCC
* *
25240373 TTTTGATAACTGGGGCAGAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
25240397 TTTTAATAACTAGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
25240421 TTTT
1 TTTT
25240425 GCATTTCCTC
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 20 0.19
24 88 0.81
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:25240362 original size:71 final size:72
Alignment explanation
Indices: 25240278--25240424 Score: 224
Period size: 71 Copynumber: 2.1 Consensus size: 72
25240268 GCCTAGCCTA
* * * *
25240278 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAA-TTGGGCA
1 TTTTAATAACTGGGGCAAAAGCACTTTTAATAACTGGGGCAGAAGCCCTTTTAATAACTAGGGCA
25240342 GAAGCCC
66 GAAGCCC
* *
25240349 TTTTAATAACTGGGGCATAAGCACTTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTAGGGCA
1 TTTTAATAACTGGGGCAAAAGCACTTTTAATAACTGGGGCAGAAGCCCTTTTAATAACTAGGGCA
*
25240414 TAAGCCC
66 GAAGCCC
25240421 TTTT
1 TTTT
25240425 GCATTTCCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
71 52 0.76
72 16 0.24
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (72 bp):
TTTTAATAACTGGGGCAAAAGCACTTTTAATAACTGGGGCAGAAGCCCTTTTAATAACTAGGGCA
GAAGCCC
Found at i:25240413 original size:48 final size:48
Alignment explanation
Indices: 25240278--25240425 Score: 244
Period size: 48 Copynumber: 3.1 Consensus size: 48
25240268 GCCTAGCCTA
* *
25240278 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
25240326 TTTTGATAA-TTGGGCAGAAGCCCTTTTAATAACTGGGGCATAAGCAC
1 TTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
25240373 TTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTAGGGCATAAGCCC
1 TTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGCATAAGCCC
25240421 TTTTG
1 TTTTG
25240426 CATTTCCTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 44 0.48
48 48 0.52
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (48 bp):
TTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:25240499 original size:20 final size:20
Alignment explanation
Indices: 25240474--25240539 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
25240464 TATGAATACC
25240474 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
25240494 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
25240514 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
25240534 CCATGT
1 TCATGT
25240540 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:25240504 original size:11 final size:11
Alignment explanation
Indices: 25240474--25240528 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
25240464 TATGAATACC
25240474 TCATGTGCATA
1 TCATGTGCATA
*
25240485 TCA--TACATA
1 TCATGTGCATA
25240494 TCATGTGCATA
1 TCATGTGCATA
* *
25240505 TCA--TACATG
1 TCATGTGCATA
25240514 TCATGTGCATA
1 TCATGTGCATA
25240525 TCAT
1 TCAT
25240529 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:25249860 original size:37 final size:38
Alignment explanation
Indices: 25249789--25249887 Score: 94
Period size: 37 Copynumber: 2.6 Consensus size: 38
25249779 TTAAAGACCC
* ** ** *
25249789 GCAGGCTTCGTGCTGCTAAAATATCCGGGTTAAAT-CA
1 GCAGGCTTCGTGCTGGTATTATATCAAGGATAAATCCA
25249826 GCAGGCTTCGTGCTGGTATTATATCAAGGATAAATCCCA
1 GCAGGCTTCGTGCTGGTATTATATCAAGGATAAAT-CCA
* **
25249865 -CAGGCCTAATGCTGGTATTATAT
1 GCAGGCTTCGTGCTGGTATTATAT
25249888 TCAGGCCTTC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
37 29 0.57
38 20 0.39
39 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (38 bp):
GCAGGCTTCGTGCTGGTATTATATCAAGGATAAATCCA
Found at i:25249962 original size:43 final size:42
Alignment explanation
Indices: 25249864--25249966 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 42
25249854 GATAAATCCC
*
25249864 ACAGGCCTAATGCTGGT-ATTATATTCAGGCCTTCATGCCTA
1 ACAGGCCTAATGCCGGTGATTATATTCAGGCCTTCATGCCTA
* * ** * * *
25249905 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 ACAGGCCTAATGCCGGTGAT-TATATTCAGGCCTTCATGCCTA
*
25249948 ACAGGCGTAATGCCGGTGA
1 ACAGGCCTAATGCCGGTGA
25249967 AATGATATGT
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
41 12 0.25
42 2 0.04
43 34 0.71
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.28
Consensus pattern (42 bp):
ACAGGCCTAATGCCGGTGATTATATTCAGGCCTTCATGCCTA
Found at i:25257903 original size:13 final size:13
Alignment explanation
Indices: 25257887--25257920 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
25257877 CAAAGCATAC
25257887 GGGCGTGTCTTGT
1 GGGCGTGTCTTGT
25257900 GGGCGTGTCTTGT
1 GGGCGTGTCTTGT
*
25257913 GGCCGTGT
1 GGGCGTGT
25257921 GAACAAGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.00, C:0.18, G:0.47, T:0.35
Consensus pattern (13 bp):
GGGCGTGTCTTGT
Found at i:25265334 original size:40 final size:40
Alignment explanation
Indices: 25265202--25265386 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
25265192 TTGAATGATG
* * * *
25265202 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
25265242 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
25265281 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
25265321 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
25265362 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25265387 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.26
40 84 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25265338 original size:79 final size:81
Alignment explanation
Indices: 25265202--25265382 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 81
25265192 TTGAATGATG
* * *
25265202 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCACTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
25265266 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * * **
25265281 TCCGGGTTAAGTCCCGAAGGCACTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCACTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
25265344 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* *
25265361 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
25265383 TTTGAACGAG
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 60 0.69
80 26 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCACTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGTTACTATA
Found at i:25265408 original size:79 final size:79
Alignment explanation
Indices: 25265255--25265419 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
25265245 GGACTAAGAT
* * * **
25265255 CCGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCACTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCACTTGAACGAGTTACTAA
*
25265320 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
25265334 CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCAATTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCACTTGAACGAGTTA-CT
* *
25265398 ATATCC-GGTTAAATT
64 AAATCCGGGTTAAATC
25265413 CCGAAGG
1 CCGAAGG
25265420 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 40 0.54
80 34 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCACTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25265417 original size:119 final size:119
Alignment explanation
Indices: 25265202--25265419 Score: 264
Period size: 119 Copynumber: 1.8 Consensus size: 119
25265192 TTGAATGATG
* *
25265202 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
25265267 GTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCACTTGTGCGAGTTACTAAA
66 GAACGAGTTACTAATCCGGGTTAAATCCCGAAGGCACTTGTGCGAGTTACTAAA
* * * * * *
25265321 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
25265384 TTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 TTGAACGAGTTA-CTA-ATCCGGGTTAAATCCCGAAGG
25265420 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
118 3 0.04
119 70 0.84
120 10 0.12
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAATCCGGGTTAAATCCCGAAGGCACTTGTGCGAGTTACTAAA
Found at i:25267207 original size:40 final size:40
Alignment explanation
Indices: 25267100--25267350 Score: 372
Period size: 40 Copynumber: 6.4 Consensus size: 40
25267090 TGATAACCGA
* * * *
25267100 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTTCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
*
25267140 GCTAAGT-CCGAAGGCA-TTGTGCGAGTTACCA-TATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TCCGG
25267178 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
25267218 GCTAAGTCCCGAAGGCATTTGTGGCG-GTTACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGT-GCGAGTTACTAGTTCCGG
25267258 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
25267298 GCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-TAT-CGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TCCGG
*
25267336 GCTATGTCCCGAAGG
1 GCTAAGTCCCGAAGG
25267351 TATTCGAGCG
Statistics
Matches: 197, Mismatches: 7, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
37 1 0.01
38 40 0.20
39 37 0.19
40 115 0.58
41 4 0.02
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGG
Found at i:25269756 original size:20 final size:20
Alignment explanation
Indices: 25269731--25269775 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
25269721 AGGGACTAAA
* *
25269731 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
25269751 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
25269771 ATGAA
1 ATGAA
25269776 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:25273432 original size:22 final size:22
Alignment explanation
Indices: 25273404--25273525 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
25273394 TTCCACATCC
25273404 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
25273426 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
25273450 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
25273473 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
25273497 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
25273520 ATCACA
1 ATCACA
25273526 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:25273439 original size:47 final size:47
Alignment explanation
Indices: 25273370--25273892 Score: 768
Period size: 47 Copynumber: 11.0 Consensus size: 47
25273360 ACAATTGCCC
* * * *
25273370 TTCGGACTTATCACATTTATACACTTCCACATCCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
25273417 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
* *
25273464 TTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCA
* *
25273511 TTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCA
* *
25273558 TTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCA
* *
25273605 TTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCA
* *
25273652 TTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCA
25273699 TTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCA
*
25273748 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
* *
25273795 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
*
25273842 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCA
25273891 TT
1 TT
25273893 GAATAATTCA
Statistics
Matches: 447, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 368 0.82
49 77 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
Found at i:25275751 original size:56 final size:56
Alignment explanation
Indices: 25275684--25275803 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
25275674 TATTAGTTTA
25275684 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
25275740 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
25275796 TTGCCCAT
1 TTGCCCAT
25275804 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:25276399 original size:13 final size:14
Alignment explanation
Indices: 25276381--25276414 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
25276371 TTTATCTTTG
25276381 TCTTTAAT-TTTAA
1 TCTTTAATCTTTAA
25276394 TCTTTAATCTTTAA
1 TCTTTAATCTTTAA
25276408 T-TTTAAT
1 TCTTTAAT
25276415 GTTAGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTTAATCTTTAA
Found at i:25276401 original size:7 final size:7
Alignment explanation
Indices: 25276381--25276414 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
25276371 TTTATCTTTG
25276381 TCTTTAA
1 TCTTTAA
25276388 T-TTTAA
1 TCTTTAA
25276394 TCTTTAA
1 TCTTTAA
25276401 TCTTTAA
1 TCTTTAA
25276408 T-TTTAA
1 TCTTTAA
25276414 T
1 T
25276415 GTTAGTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (7 bp):
TCTTTAA
Found at i:25276406 original size:20 final size:19
Alignment explanation
Indices: 25276368--25276414 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
25276358 TTTATTTCTC
* *
25276368 ATTTTTATCTTTGTCTTTA
1 ATTTTAATCTTTATCTTTA
25276387 ATTTTAATCTTTAATCTTTA
1 ATTTTAATCTTT-ATCTTTA
25276407 ATTTTAAT
1 ATTTTAAT
25276415 GTTAGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTAATCTTTATCTTTA
Found at i:25276520 original size:44 final size:44
Alignment explanation
Indices: 25276469--25276555 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
25276459 TACTAATAAG
25276469 TTTGTTTATTTTTAAACAGTCCAATTTTCAAATAAAGTTTGGGT
1 TTTGTTTATTTTTAAACAGTCCAATTTTCAAATAAAGTTTGGGT
* *
25276513 TTTGTTTATTTTTAAGCAGTCCAATTTTCAAATAATGTTTGGG
1 TTTGTTTATTTTTAAACAGTCCAATTTTCAAATAAAGTTTGGG
25276556 CTCAAGGCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (44 bp):
TTTGTTTATTTTTAAACAGTCCAATTTTCAAATAAAGTTTGGGT
Found at i:25278496 original size:38 final size:38
Alignment explanation
Indices: 25278453--25278529 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
25278443 TTTCAAATTA
25278453 ACATGTATAACCATAGCATATCCACTTAGCACCACATT
1 ACATGTATAACCATAGCATATCCACTTAGCACCACATT
* * * *
25278491 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
1 ACATGTATAACCATAGCATATCCACTTAGCACCACATT
25278529 A
1 A
25278530 ATGAATCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCATAGCATATCCACTTAGCACCACATT
Found at i:25278605 original size:48 final size:48
Alignment explanation
Indices: 25278493--25278628 Score: 186
Period size: 48 Copynumber: 2.9 Consensus size: 48
25278483 ACCACATTAC
* * *
25278493 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
** * *
25278540 ACATGT-ATCCGTGGTATATTCACTTAGCACCACGTTACATGATTCAAT
1 ATGTGTAAT-CGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
25278588 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATG
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATG
25278629 TATAACCGCG
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
46 1 0.01
47 29 0.38
48 44 0.58
49 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.32
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
Found at i:25284200 original size:42 final size:43
Alignment explanation
Indices: 25284141--25284233 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
25284131 GATTTACGTA
* ** *
25284141 TAAGACCATGTCTGGGACATTGACATCG-TATCT-AATTTCATG
1 TAAGACCATATCTGGGACAGAGACATCGATAT-TGAATTACATG
* *
25284183 TAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATATCTGGGACAGAGACATCGATATTGAATTACATG
25284226 TAAGACCA
1 TAAGACCA
25284234 CGTCCGGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (43 bp):
TAAGACCATATCTGGGACAGAGACATCGATATTGAATTACATG
Found at i:25284251 original size:43 final size:42
Alignment explanation
Indices: 25284141--25284251 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
25284131 GATTTACGTA
* * * *
25284141 TAAGACCATGTCTGGGACATTGACATCGTATCTAATTTCATG
1 TAAGACCACGTCTGGGACATAGGCATCGTATCTAATTACATG
* *
25284183 TAAGACC-CTATCTGGGACAGAGGCATCGATAT-TGAATTACATG
1 TAAGACCAC-GTCTGGGACATAGGCATCG-TATCT-AATTACATG
* *
25284226 TAAGACCACGTCCGGGACATCGGCAT
1 TAAGACCACGTCTGGGACATAGGCAT
25284252 TGTACTTGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
42 23 0.42
43 31 0.56
44 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATAGGCATCGTATCTAATTACATG
Found at i:25286201 original size:63 final size:66
Alignment explanation
Indices: 25286024--25286204 Score: 192
Period size: 68 Copynumber: 2.8 Consensus size: 66
25286014 GATGGTATGT
** * * * * *
25286024 AGCTAGGTCACATGTATTGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACGAGACATTATGA
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGA-ATTATAA
25286089 TG
65 TG
* * *
25286091 TAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ATAAGAGAGCTACGAG-A-TA-A
1 -AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GTACAAGAGAGCTACGAGAATTATA
25286152 ACTG
64 A-TG
*
25286156 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGC
25286205 CAAAATTATG
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 43 0.45
64 1 0.01
65 4 0.04
66 1 0.01
68 45 0.47
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (66 bp):
AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGAATTATAAT
G
Found at i:25305611 original size:47 final size:47
Alignment explanation
Indices: 25305559--25306060 Score: 797
Period size: 47 Copynumber: 10.6 Consensus size: 47
25305549 GATAATTGTG
* *
25305559 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
25305606 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25305653 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25305702 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
25305749 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25305796 ATGTGAAAGTGTATATATATGTGATAACGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25305845 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25305894 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25305941 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
25305988 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25306035 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25306061 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 26, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
47 288 0.68
49 137 0.32
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25305666 original size:96 final size:96
Alignment explanation
Indices: 25305559--25306060 Score: 804
Period size: 96 Copynumber: 5.3 Consensus size: 96
25305549 GATAATTGTG
25305559 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
25305622 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
25305653 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25305718 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
25305749 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
25305812 ATATGTGATAACGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
25305845 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
25305910 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25305941 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
25306004 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
25306035 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
25306061 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 19, Indels: 16
0.92 0.05 0.04
Matches are distributed among these distances:
94 144 0.38
95 3 0.01
96 189 0.50
98 45 0.12
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25305708 original size:143 final size:143
Alignment explanation
Indices: 25305559--25306060 Score: 828
Period size: 143 Copynumber: 3.5 Consensus size: 143
25305549 GATAATTGTG
*
25305559 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25305624 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
25305689 GCCGATGTGATGA
131 GCCGATGTGATGA
*
25305702 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
25305767 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAACGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
25305832 GCCGATGTGATGA
131 GCCGATGTGATGA
25305845 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
25305910 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
25305973 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* * * * * * * * *
25305988 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25306053 GTGATAAG
66 GTGATAAG
25306061 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 56 0.17
143 190 0.56
145 93 0.27
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:25309150 original size:32 final size:32
Alignment explanation
Indices: 25309105--25309174 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
25309095 ACTAGATAAA
*
25309105 AACACATTTGAAATGTCAAGAGTCATCACACT
1 AACACATTAGAAATGTCAAGAGTCATCACACT
25309137 AACACATTAGAAATGTCAAGAGTCATCACACT
1 AACACATTAGAAATGTCAAGAGTCATCACACT
*
25309169 ATCACA
1 AACACA
25309175 GTTTTATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (32 bp):
AACACATTAGAAATGTCAAGAGTCATCACACT
Found at i:25310860 original size:46 final size:48
Alignment explanation
Indices: 25310792--25310919 Score: 135
Period size: 46 Copynumber: 2.8 Consensus size: 48
25310782 CTATGTTGAT
* * * *
25310792 AAACAGTAAGCTCTATT-AAGCTGAAAAT-GGTAAGCTCTACTGAGCTG
1 AAACAGTAAGCTCT-TTCGAGCTGAAAATCAGTAAGCTCCAATGAGCTG
25310839 -AACAGTAAGCTCTTTCGAGCTG--AATCAGTAAGCTCCAATGAGCTG
1 AAACAGTAAGCTCTTTCGAGCTGAAAATCAGTAAGCTCCAATGAGCTG
* * *
25310884 AAATAGTAAGCTCTTACGAGTTG--AATCAGTAAGCTC
1 AAACAGTAAGCTCTTTCGAGCTGAAAATCAGTAAGCTC
25310920 ATACAAGCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
44 3 0.04
45 18 0.25
46 50 0.70
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (48 bp):
AAACAGTAAGCTCTTTCGAGCTGAAAATCAGTAAGCTCCAATGAGCTG
Done.