Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 83 of 332
Found at i:26055585 original size:49 final size:49
Alignment explanation
Indices: 26055429--26055681 Score: 374
Period size: 49 Copynumber: 5.3 Consensus size: 49
26055419 CCCTTCGGGA
* * * * *
26055429 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26055476 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26055523 CTTATCACATATATAT--ACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26055570 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26055619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26055668 CTTATCTCATATAT
1 CTTATCACATATAT
26055682 GCATGTTCAC
Statistics
Matches: 186, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 87 0.47
49 98 0.53
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26055691 original size:96 final size:96
Alignment explanation
Indices: 26055429--26055702 Score: 378
Period size: 96 Copynumber: 2.9 Consensus size: 96
26055419 CCCTTCGGGA
* * * * * * *
26055429 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26055492 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGACCATTAGGC
*
26055523 CTTATCACATATATAT--ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
26055586 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGACCATTAGGC
* *
26055619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26055684 A-TGTTCACATCCATCACAT
66 ACT-TTCACATTCATCACAT
26055703 AGAATCCTAA
Statistics
Matches: 160, Mismatches: 13, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
94 41 0.26
95 2 0.01
96 80 0.50
98 37 0.23
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGACCATTAGGC
Found at i:26060834 original size:47 final size:47
Alignment explanation
Indices: 26060760--26061735 Score: 1574
Period size: 47 Copynumber: 20.5 Consensus size: 47
26060750 GTGTGAATAC
26060760 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26060809 GTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26060856 GTGAAAGTGTATATATATGCGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26060905 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26060952 GTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061001 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26061050 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
26061099 GTGAAAGTGTATATATATGTGATAAGGCCTAATGACTGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061148 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
26061195 GTGAAGGTGTATATATGTGGTAAGGCCTAATGGCCGAAGTGACGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
26061242 GCGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061289 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061336 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26061383 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
26061430 GTGAAGGTGTATATATGTGGTAAGGCCTAATGGCCGAAGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
26061477 GCGAAAGTGTATATATGTTATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061524 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26061571 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATTTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
26061618 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
26061665 GTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
26061712 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
26061736 TCCCGAAGGG
Statistics
Matches: 869, Mismatches: 54, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
47 627 0.72
49 242 0.28
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:26061923 original size:37 final size:37
Alignment explanation
Indices: 26061854--26061932 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26061844 CCGAGCTCTA
* * *
26061854 AAGACCCGATGACTACGCGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
* *
26061891 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
26061928 AAGAC
1 AAGAC
26061933 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
Found at i:26063089 original size:40 final size:40
Alignment explanation
Indices: 26063057--26063557 Score: 541
Period size: 40 Copynumber: 12.6 Consensus size: 40
26063047 CCAGCATGAT
* * * *
26063057 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
26063097 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26063137 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26063177 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
26063217 TGCTTTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
26063257 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26063297 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
26063337 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * * * *
26063377 TGCTCTTCGAAACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* ** * * *
26063418 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * * *
26063458 T-CCCTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAA
* **
26063497 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
26063537 AGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGACTTAGCCCGG
26063558 GCATCATTCG
Statistics
Matches: 402, Mismatches: 48, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
38 4 0.01
39 28 0.07
40 348 0.87
41 22 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:26065462 original size:37 final size:37
Alignment explanation
Indices: 26065412--26065490 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26065402 TTATTACGAA
* * *
26065412 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
26065449 GTCTTACCCGGACAAAATCCCCACCCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26065486 GTCTT
1 GTCTT
26065491 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26065696 original size:47 final size:47
Alignment explanation
Indices: 26065609--26066117 Score: 804
Period size: 47 Copynumber: 10.7 Consensus size: 47
26065599 CCCTTCGGGA
* * * * * *
26065609 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26065656 CCTATCCCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26065703 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26065750 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26065797 CTTATCACATATATACACTTTCAAATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26065844 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26065891 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26065940 CTTATCACATATATACACTTTCACATTTATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26065987 CTTATCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26066034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26066083 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
26066118 AGAATCCTAA
Statistics
Matches: 430, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 338 0.79
49 91 0.21
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26065950 original size:143 final size:143
Alignment explanation
Indices: 26065609--26066096 Score: 822
Period size: 143 Copynumber: 3.4 Consensus size: 143
26065599 CCCTTCGGGA
* * * * * * *
26065609 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCCCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26065672 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26065737 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
26065750 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26065813 ACTTTCAAATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26065878 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
26065891 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
26065956 ACTTTCACATTTATCACATCGGCCACTAGGCCTTATCACATATATACAGTTTCACATTCATCACA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26066021 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
26066034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
26066097 GCATGTTCAC
Statistics
Matches: 328, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
140 1 0.00
141 136 0.41
143 191 0.58
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:26069080 original size:30 final size:30
Alignment explanation
Indices: 26069034--26069093 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
26069024 TTCCCGAGCC
26069034 TAGGGGAAAAAGTGTAA-TTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAACTT-TGCAAAAGTT
*
26069064 TAGGGGCAAAAA-TGTAACTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAACTTTGCAAAAGTT
26069094 CTTATTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 20 0.74
31 7 0.26
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAACTTTGCAAAAGTT
Found at i:26069573 original size:46 final size:45
Alignment explanation
Indices: 26069520--26069692 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
26069510 TTGGGCATCT
* *
26069520 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCAAATGTCC
* * * * *
26069566 GAACTCGTTGAGTTGAGTCCAAGTTCGTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCAA--ATG--TCC
* * *
26069613 GAGCTCGTTGAGTTGAGTCCGAGTTCATTGATGGATGCAAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCATT-ATGGATGCAAATGTCC
* *
26069659 GAGCTCGTTGAGTTGAGTTCGAGTTCATTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGG
26069693 GTGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 56 0.54
47 30 0.29
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCAAATGTCC
Found at i:26071429 original size:25 final size:26
Alignment explanation
Indices: 26071393--26071480 Score: 96
Period size: 25 Copynumber: 3.5 Consensus size: 26
26071383 TATCATATAT
26071393 GCTCT-TTCGAGC-CAT-GATCAGTAA
1 GCTCTATT-GAGCTCATGGATCAGTAA
* *
26071417 GCTTCTCTTGAGCTGATGGAT-AGTAA
1 GC-TCTATTGAGCTCATGGATCAGTAA
*
26071443 GCTCTATTGAGCTGATGGA-CAGTAA
1 GCTCTATTGAGCTCATGGATCAGTAA
26071468 GCTCTATTGAGCT
1 GCTCTATTGAGCT
26071481 GAACAGTAAG
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
24 2 0.04
25 41 0.72
26 11 0.19
27 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
GCTCTATTGAGCTCATGGATCAGTAA
Found at i:26071481 original size:25 final size:25
Alignment explanation
Indices: 26071411--26071493 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
26071401 GAGCCATGAT
*
26071411 CAGTAAGCTTCTCTTGAGCTGATGGA
1 CAGTAAGC-TCTATTGAGCTGATGGA
*
26071437 TAGTAAGCTCTATTGAGCTGATGGA
1 CAGTAAGCTCTATTGAGCTGATGGA
26071462 CAGTAAGCTCTATTGAGCTGA---A
1 CAGTAAGCTCTATTGAGCTGATGGA
26071484 CAGTAAGCTC
1 CAGTAAGCTC
26071494 ATACGAGCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
22 11 0.20
25 36 0.67
26 7 0.13
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (25 bp):
CAGTAAGCTCTATTGAGCTGATGGA
Found at i:26071502 original size:47 final size:49
Alignment explanation
Indices: 26071411--26071504 Score: 113
Period size: 47 Copynumber: 1.9 Consensus size: 49
26071401 GAGCCATGAT
* * *
26071411 CAGTAAGCTTCTCTTGAGCTGATGGATAGTAAGCTCTATTGAGCTGATGGA
1 CAGTAAGCTTCTATTGAGCTGA--GACAGTAAGCTCTATCGAGCTGATGGA
26071462 CAGTAAGC-TCTATTGAGCTGA-ACAGTAAGCTC-ATACGAGCTGA
1 CAGTAAGCTTCTATTGAGCTGAGACAGTAAGCTCTAT-CGAGCTGA
26071505 AACGGTAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
46 2 0.05
47 17 0.44
50 12 0.31
51 8 0.21
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
CAGTAAGCTTCTATTGAGCTGAGACAGTAAGCTCTATCGAGCTGATGGA
Found at i:26075013 original size:27 final size:26
Alignment explanation
Indices: 26074965--26075070 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 26
26074955 AGGAAGCGTC
* * *
26074965 CTGGTGGCTATGCCAGAAATATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
* *
26074992 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26075019 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCT-GAT
* *
26075047 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
26075071 TTCTAACAGC
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 47 0.72
28 17 0.26
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:26075069 original size:54 final size:54
Alignment explanation
Indices: 26074965--26075074 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 54
26074955 AGGAAGCGTC
*
26074965 CTGGTGGCTATGCCAGAAATATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAGAAATATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * **
26075019 CTGGTGGCTCTGCCACG-ATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCA-GAAATATCT-GATCTGGTGACTCTACCACATATATCTGTT
26075073 CT
1 CT
26075075 AACAGCCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCAGAAATATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:26086747 original size:56 final size:56
Alignment explanation
Indices: 26086656--26086778 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
26086646 GAGATTGGCG
* * *
26086656 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
26086713 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
26086768 CTGAGTGTGCG
1 CTAAGTGTGCG
26086779 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:26086765 original size:27 final size:28
Alignment explanation
Indices: 26086656--26086778 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
26086646 GAGATTGGCG
* * * *
26086656 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
26086685 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
26086713 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
26086741 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
26086768 CTGAGTGTGCG
1 CTAAGTGTGCG
26086779 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:26086789 original size:27 final size:27
Alignment explanation
Indices: 26086681--26086791 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
26086671 TAAATTGTAC
* * *
26086681 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
26086709 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
26086737 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
26086764 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
26086791 A
1 A
26086792 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:26088915 original size:52 final size:52
Alignment explanation
Indices: 26088814--26088919 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 52
26088804 CAGGTAGGAG
* **
26088814 ATGTAACATCCCAAATTAGGGTATAGTCAGAACAGTGATTTCGGGACCACAA
1 ATGTAACATCCCAAATTAGGGTATAGTCAGAACAATGATTTCGCAACCACAA
* * * *
26088866 ATGTAACATCCCGAATTAGGGTCTAGTCAGAACAATGGTTTTGCAACCACAA
1 ATGTAACATCCCAAATTAGGGTATAGTCAGAACAATGATTTCGCAACCACAA
26088918 AT
1 AT
26088920 TCGAGATAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (52 bp):
ATGTAACATCCCAAATTAGGGTATAGTCAGAACAATGATTTCGCAACCACAA
Found at i:26112346 original size:18 final size:19
Alignment explanation
Indices: 26112323--26112369 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
26112313 ATTTTTATTA
26112323 TATATTTTACTTATA-A-AT
1 TATATTTTA-TTATATATAT
26112341 TATATTTTATTATATATAT
1 TATATTTTATTATATATAT
26112360 TAT-TTTTATT
1 TATATTTTATT
26112370 TTTTATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 17 0.63
19 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TATATTTTATTATATATAT
Found at i:26112352 original size:39 final size:38
Alignment explanation
Indices: 26112309--26112393 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 38
26112299 AAATAATGTA
*
26112309 TATTATT-T-TTATTATATATTTTACTTATAAATTATATTT
1 TATTATTATATTATT-TATATTTT--TTATAAATTATATAT
* *
26112348 TATTATATATATTATTTTTATTTTTTATAAATTATGTAT
1 TATTAT-TATATTATTTATATTTTTTATAAATTATATAT
26112387 TATTATT
1 TATTATT
26112394 CATTAATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
38 1 0.03
39 25 0.62
40 1 0.03
41 8 0.20
42 5 0.12
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (38 bp):
TATTATTATATTATTTATATTTTTTATAAATTATATAT
Found at i:26112387 original size:24 final size:23
Alignment explanation
Indices: 26112339--26112393 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
26112329 TTACTTATAA
*
26112339 ATTA-TATTTTATTATATATATT
1 ATTATTATTTTATTATAAATATT
*
26112361 ATTTTTATTTT-TTATAAATTATGT
1 ATTATTATTTTATTATAAA-TAT-T
26112385 ATTATTATT
1 ATTATTATT
26112394 CATTAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 9 0.33
23 9 0.33
24 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (23 bp):
ATTATTATTTTATTATAAATATT
Found at i:26112501 original size:17 final size:17
Alignment explanation
Indices: 26112479--26112511 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26112469 TATTTTATTT
26112479 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
26112496 ATATTTTATTATATAT
1 ATATTTTATTACATAT
26112512 TATACCTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:26126111 original size:44 final size:44
Alignment explanation
Indices: 26126060--26126150 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
26126050 GATCTAAGAT
* * *
26126060 GATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAATATAGCA
1 GATTTGGCATCTCTATATTGTCAGAGAGCAAATCAAAGATAGCA
* *
26126104 GATTTGGCATCTCTGTATTGTTAGAGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTATATTGTCAGAGAGCAAATCAAAGATAGCA
26126148 GAT
1 GAT
26126151 CTGACATTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (44 bp):
GATTTGGCATCTCTATATTGTCAGAGAGCAAATCAAAGATAGCA
Found at i:26126426 original size:44 final size:44
Alignment explanation
Indices: 26126372--26126462 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
26126362 GACCTAAGAT
* *
26126372 GATTTGGCATCTCTGTATTGTTAGAGAGAAAATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGATAGCA
* *
26126416 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGATAGCA
26126460 GAT
1 GAT
26126463 CTGACCTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGATAGCA
Found at i:26126571 original size:94 final size:91
Alignment explanation
Indices: 26126415--26126596 Score: 240
Period size: 94 Copynumber: 2.0 Consensus size: 91
26126405 TGAAGATAGC
** * * * *
26126415 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATCTGACCTTCAGATGTTT
1 AGATTTGGCATCTCCATATCGACAGAGAGCAGATCGAACATAGCAGATCTAACCTTCAGATGTTT
*
26126480 -TCACATCGAAGCAGATCTAAGATAAT
66 CT-ACATCGAAGCAGATCCAAGATAAT
*
26126506 AGATTTGGCATCTCCATATCCGACAGAGAGCAGATCGGAGACATAGCAGATCTAACCTTCGGATG
1 AGATTTGGCATCTCCATAT-CGACAGAGAGCAGATC-GA-ACATAGCAGATCTAACCTTCAGATG
*
26126571 TTTCTACATCGAAGTAGATCCAAGAT
63 TTTCTACATCGAAGCAGATCCAAGAT
26126597 GATTTGACAT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
91 17 0.22
92 14 0.18
93 2 0.03
94 44 0.56
95 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (91 bp):
AGATTTGGCATCTCCATATCGACAGAGAGCAGATCGAACATAGCAGATCTAACCTTCAGATGTTT
CTACATCGAAGCAGATCCAAGATAAT
Found at i:26126577 original size:312 final size:312
Alignment explanation
Indices: 26126012--26127030 Score: 1480
Period size: 312 Copynumber: 3.3 Consensus size: 312
26126002 CAGGCTAAAG
* *
26126012 CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGATCTAAGATGATTTGGCATCTCTATA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGACCTAAGATGATTTGGCATCTCTGTA
* * * *
26126077 TTGTCAGAGAGCAGATCGAATATAGCAGATTTGGCATCTCTGTATTGTTAGAGAGCAAATCAAAG
66 TTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * *
26126142 ATAGCAGATCTGACATTCGGATGTTTTCACATCGAAGCAGATCCAAGATAACAGATTTGACTTCT
131 ATAGCAGATCTGACATTCAGATGTTTTCACATCGAAGCAGATCCAAGATAACAGATTTGGCATCT
*
26126207 CCATATTCGACGGAGATCAGATCGGAGACATAGCAGATCTAACCTTTGGATGTTTCTACATCGAA
196 CCATATTCGACGGAGAGCAGATCGGAGACATAGCAGATCTAACCTTTGGATGTTTCTACATCGAA
* *
26126272 GTAGATCCAAGATGATTTGGCATCCTTACGTTTATAAGTAGCAGATCGAAGA
261 GTAGATCCAAGATGATTTGGCATCCTTGCGTTTATAAGGAGCAGATCGAAGA
*
26126324 CATAGCAGATTTGGCTTTTACGTGTTTACGCTAAAGCAGACCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGACCTAAGATGATTTGGCATCTCTGTA
* * * *
26126389 TTGTTAGAGAGAAAATTGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
66 TTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * *
26126454 ATAGCAGATCTGACCTTCAGATGTTTTCACATCGAAGCAGATCTAAGATAATAGATTTGGCATCT
131 ATAGCAGATCTGACATTCAGATGTTTTCACATCGAAGCAGATCCAAGATAACAGATTTGGCATCT
* * *
26126519 CCATATCCGACAGAGAGCAGATCGGAGACATAGCAGATCTAACCTTCGGATGTTTCTACATCGAA
196 CCATATTCGACGGAGAGCAGATCGGAGACATAGCAGATCTAACCTTTGGATGTTTCTACATCGAA
* *
26126584 GTAGATCCAAGATGATTTGACATCCTTGCGTTTATAAGGAGTAGATCGAAGA
261 GTAGATCCAAGATGATTTGGCATCCTTGCGTTTATAAGGAGCAGATCGAAGA
* * * * *
26126636 CATAGCAGATTTGGCTTTCACATGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGACCTAAGATGATTTGGCATCTCTGTA
* * *
26126701 TTGTTAGAGAGCAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAC
66 TTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * * * * * * *
26126766 ATAGCAAATTTGGCATCTCTG-TATTGTCAGA--G-AGCAGATCGAAGATAACAGATTTGGCATC
131 ATAGCAGATCTGACAT-TCAGATGTTTTCACATCGAAGCAGATCCAAGATAACAGATTTGGCATC
* *
26126827 TCCATATTCGACGGAGAGTAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTT-TCACATCG
195 TCCATATTCGACGGAGAGCAGATCGGAGACATAGCAGATCTAACCTTTGGATGTTTCT-ACATCG
* *
26126891 AAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATTGAAGA
259 AAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTATAAGGAGCAGATCGAAGA
* * * * * * *
26126945 TATAGCTGATTAGGCTTTCACGTGTTTACGTTGAAGAAGATCC--A-A-GATTTGGCGTCTCTGT
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGA-CCTAAGATGATTTGGCATCTCTGT
26127006 ATTGTCAGAGAGCAGATCGAAGATA
65 ATTGTCAGAGAGCAGATCGAAGATA
26127031 TCAACATGGC
Statistics
Matches: 638, Mismatches: 66, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
306 38 0.06
307 1 0.00
308 2 0.00
309 167 0.26
310 2 0.00
312 425 0.67
313 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (312 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGACCTAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
ATAGCAGATCTGACATTCAGATGTTTTCACATCGAAGCAGATCCAAGATAACAGATTTGGCATCT
CCATATTCGACGGAGAGCAGATCGGAGACATAGCAGATCTAACCTTTGGATGTTTCTACATCGAA
GTAGATCCAAGATGATTTGGCATCCTTGCGTTTATAAGGAGCAGATCGAAGA
Found at i:26126740 original size:44 final size:44
Alignment explanation
Indices: 26126685--26126855 Score: 243
Period size: 44 Copynumber: 3.9 Consensus size: 44
26126675 ATCTAAGATG
* *
26126685 ATTTGGTATCTCTGTATTGTTAGAGAGCAGATCGAAGATAGCAA
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAA
*
26126729 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAACATAGCAA
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAA
* *
26126773 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAA
** * * *
26126817 ATTTGGCATCTCCATATTCGACGGAGAGTAGATCGAAGA
1 ATTTGGCATCTCTGTATT-GTCAGAGAGCAGATCGAAGA
26126856 CATAGCAGAT
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
44 98 0.85
45 17 0.15
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAA
Found at i:26128620 original size:29 final size:28
Alignment explanation
Indices: 26128587--26128641 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
26128577 TTTAATATTT
26128587 TTATA-AATATTTAATTTATATTAAATACC
1 TTATATAATATTT-ATTTATA-TAAATACC
* *
26128616 TTATATATTATTTATTTTTATAAATA
1 TTATATAATATTTATTTATATAAATA
26128642 TTAGTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.26
29 11 0.48
30 6 0.26
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (28 bp):
TTATATAATATTTATTTATATAAATACC
Found at i:26128665 original size:44 final size:46
Alignment explanation
Indices: 26128582--26128675 Score: 115
Period size: 44 Copynumber: 2.1 Consensus size: 46
26128572 TCAATTTTAA
* * *
26128582 TATTTTTATAAATATTTAATTTATATTAAATACCTTATA-TATTATT
1 TATTTTTATAAATATTTAAGTTATATAAAATACATTATATTATT-TT
26128628 TATTTTTATAAATA-TT-AGTTATATAAAATA-ATGTATATTATTTT
1 TATTTTTATAAATATTTAAGTTATATAAAATACAT-TATATTATTTT
26128672 TATT
1 TATT
26128676 ATATATTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 6 0.14
46 14 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (46 bp):
TATTTTTATAAATATTTAAGTTATATAAAATACATTATATTATTTT
Found at i:26128713 original size:17 final size:18
Alignment explanation
Indices: 26128677--26128714 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26128667 ATTTTTATTA
26128677 TATATTTTACTTATAAAT
1 TATATTTTACTTATAAAT
*
26128695 TATATTTTA-TTATATAT
1 TATATTTTACTTATAAAT
26128712 TAT
1 TAT
26128715 TTCTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TATATTTTACTTATAAAT
Found at i:26128853 original size:17 final size:17
Alignment explanation
Indices: 26128831--26128863 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26128821 TATTTTATTT
26128831 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
26128848 ATATTTTATTATATAT
1 ATATTTTATTACATAT
26128864 TATACCTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:26132386 original size:95 final size:92
Alignment explanation
Indices: 26132163--26132394 Score: 236
Period size: 95 Copynumber: 2.5 Consensus size: 92
26132153 GAATTGACGG
* * *
26132163 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGAC
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGAC
*
26132228 CATGTCAAGACATGACATCGGTATTGA
66 CATGTCAAGACATGACATCGGTATAGA
** **
26132255 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGAACTAAGACAAGGATACCATGTA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGACAAGGATACCATGTA
*** * *
26132319 AGACCATGTTTGGAACATGGCATTTGGTA-AGA
62 AGACCATGTCAAG-ACATGACA-TCGGTATAGA
* * * *
26132351 -TAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAG
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
26132395 TTCTATATGT
Statistics
Matches: 112, Mismatches: 21, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
92 39 0.35
93 1 0.01
94 1 0.01
95 57 0.51
96 9 0.08
97 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (92 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGAC
CATGTCAAGACATGACATCGGTATAGA
Found at i:26135086 original size:26 final size:26
Alignment explanation
Indices: 26135055--26135162 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26135045 TGAAATTCCC
*
26135055 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
26135081 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
26135107 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
26135133 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26135159 ATCA
1 ATCA
26135163 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26135624 original size:53 final size:55
Alignment explanation
Indices: 26135486--26135643 Score: 205
Period size: 55 Copynumber: 2.9 Consensus size: 55
26135476 GGGGCGTTAC
* * * *
26135486 ACTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCGTTGATGAGTT
1 ACTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT
* * *
26135541 ACTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT
1 ACTATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT
* *
26135596 -C-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGT
1 ACTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGT
26135644 ATGTTCAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.04
53 37 0.42
54 1 0.01
55 43 0.48
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (55 bp):
ACTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT
Found at i:26138382 original size:35 final size:35
Alignment explanation
Indices: 26138306--26138386 Score: 82
Period size: 35 Copynumber: 2.4 Consensus size: 35
26138296 TAATACAATT
* *
26138306 AATTTAAAT-TTTAAATTTTAAAATATGCAAAATA
1 AATTTAAATATTTAAATATTAAAATATGAAAAATA
26138340 AGA-TTAAATATTTGAAA-ATTAAAATAT-AAAAACTA
1 A-ATTTAAATATTT-AAATATTAAAATATGAAAAA-TA
26138375 AATTTAAA-ATTT
1 AATTTAAATATTT
26138387 TGTGAAAAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
34 16 0.40
35 21 0.52
36 3 0.08
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (35 bp):
AATTTAAATATTTAAATATTAAAATATGAAAAATA
Found at i:26139552 original size:39 final size:39
Alignment explanation
Indices: 26139499--26139581 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
26139489 CTCTCTCTCG
* * *
26139499 ACAAAAATTACAAAATAA-ATTTTAAAATT-TAAAATATTT
1 ACAAAAATCACAAAA-AATAATTT-AAATTATAAAAAATTT
*
26139538 ACAAAAATCCCAAAAAATAATTTAAATTATAAAAAATTT
1 ACAAAAATCACAAAAAATAATTTAAATTATAAAAAATTT
26139577 A-AAAA
1 ACAAAA
26139582 TATATAAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
38 11 0.29
39 27 0.71
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (39 bp):
ACAAAAATCACAAAAAATAATTTAAATTATAAAAAATTT
Found at i:26146393 original size:16 final size:16
Alignment explanation
Indices: 26146372--26146408 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
26146362 GTACATCGGC
*
26146372 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATACCA
26146388 AAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
26146404 AAAAG
1 AAAAG
26146409 TAGAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.57, C:0.22, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:26146414 original size:16 final size:16
Alignment explanation
Indices: 26146372--26146414 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
26146362 GTACATCGGC
* *
26146372 AAAAGCCGAAATGCCA
1 AAAAGCAGAAATACCA
*
26146388 AAAAGCCGAAATACCA
1 AAAAGCAGAAATACCA
*
26146404 AAAAGTAGAAA
1 AAAAGCAGAAA
26146415 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.58, C:0.19, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAGCAGAAATACCA
Found at i:26146667 original size:29 final size:28
Alignment explanation
Indices: 26146626--26146715 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
26146616 GTGAGCATGG
*
26146626 ATAT-AATGTGATTTGGGCCGGCTGGGCC
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* *
26146654 ATATAAATGAGATTGGGCCTGATGGGCC
1 ATATAAATGTGATTGGGCCGGATGGGCC
* * *
26146682 ATATGAACGTGAATTGGGTCGGATGGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
26146711 ATATA
1 ATATA
26146716 TGCATGTGTG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:26146669 original size:28 final size:28
Alignment explanation
Indices: 26146638--26146715 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
26146628 ATAATGTGAT
*
26146638 TTGGGCCGGCTGGGCCATATAA-ATGAGA
1 TTGGGCCGGATGGGCCATATAACATGA-A
* *
26146666 TTGGGCCTGATGGGCCATATGAACGTGAA
1 TTGGGCCGGATGGGCCATAT-AACATGAA
*
26146695 TTGGGTCGGATGGGCCATATA
1 TTGGGCCGGATGGGCCATATA
26146716 TGCATGTGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 19 0.44
29 21 0.49
30 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (28 bp):
TTGGGCCGGATGGGCCATATAACATGAA
Found at i:26150695 original size:46 final size:46
Alignment explanation
Indices: 26150645--26150817 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
26150635 TGGTTGAGCA
*
26150645 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * *
26150691 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* *
26150736 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* *
26150784 TCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26150818 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 60 0.55
47 29 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:26150801 original size:93 final size:93
Alignment explanation
Indices: 26150642--26150812 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26150632 GGATGGTTGA
26150642 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
26150707 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
26150735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
26150800 TGAGTCCTAGTTC
66 TGAGTCCGAGTTC
26150813 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26151079 original size:19 final size:20
Alignment explanation
Indices: 26151042--26151079 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26151032 ATAAGGTGGT
26151042 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
26151062 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
26151080 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:26154358 original size:8 final size:8
Alignment explanation
Indices: 26154345--26154383 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
26154335 ATCGGCAAAA
26154345 GCCGAAAT
1 GCCGAAAT
26154353 GCCGAAAT
1 GCCGAAAT
*
26154361 GCCGAAAA
1 GCCGAAAT
*
26154369 GCTGAAAT
1 GCCGAAAT
26154377 GCCGAAA
1 GCCGAAA
26154384 AGTCAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:26154662 original size:28 final size:27
Alignment explanation
Indices: 26154603--26154719 Score: 87
Period size: 28 Copynumber: 4.1 Consensus size: 27
26154593 GTGAGCATGG
* * * *
26154603 ATATAATGTGATTTGGGCCGGATGCGCT
1 ATATAATGAGA-TTGGGCCTGATGGGCC
*
26154631 ATATATATGAGATTTGGCCTGATGGGCC
1 ATATA-ATGAGATTGGGCCTGATGGGCC
26154659 ATATGAACGTGA-ATTGGGCC-GAATGGGCC
1 ATAT-AA--TGAGATTGGGCCTG-ATGGGCC
*
26154688 ATACAAATGAGATTGGGCCT-AGTGGGCC
1 ATA-TAATGAGATTGGGCCTGA-TGGGCC
26154716 ATAT
1 ATAT
26154720 GCATGTATGT
Statistics
Matches: 72, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
27 4 0.06
28 40 0.56
29 25 0.35
30 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.27
Consensus pattern (27 bp):
ATATAATGAGATTGGGCCTGATGGGCC
Found at i:26154707 original size:57 final size:57
Alignment explanation
Indices: 26154610--26154720 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
26154600 TGGATATAAT
* * * * * *
26154610 GTGATTTGGGCCGGATGCGCTATATATATGAGATTTGGCCT-GATGGGCCATATGAAC
1 GTGAATTGGGCCGAATGCGCCATACAAATGAGATTGGGCCTAG-TGGGCCATATGAAC
*
26154667 GTGAATTGGGCCGAATGGGCCATACAAATGAGATTGGGCCTAGTGGGCCATATG
1 GTGAATTGGGCCGAATGCGCCATACAAATGAGATTGGGCCTAGTGGGCCATATG
26154721 CATGTATGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
57 45 0.98
58 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.26
Consensus pattern (57 bp):
GTGAATTGGGCCGAATGCGCCATACAAATGAGATTGGGCCTAGTGGGCCATATGAAC
Found at i:26171243 original size:24 final size:23
Alignment explanation
Indices: 26171206--26171251 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
26171196 TCCAGGCTAT
*
26171206 AACAGGAAATTCATAAGAGTTTAG
1 AACAGGAAACTCAT-AGAGTTTAG
* *
26171230 AACAGGAAGCTCATTGAGTTTA
1 AACAGGAAACTCATAGAGTTTA
26171252 ACAAGTAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (23 bp):
AACAGGAAACTCATAGAGTTTAG
Found at i:26179341 original size:18 final size:18
Alignment explanation
Indices: 26179306--26179351 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
26179296 AATAATTATT
26179306 ATCATATTTA-AAATAAA
1 ATCATATTTATAAATAAA
*
26179323 ATCATATTTATATATAAA
1 ATCATATTTATAAATAAA
*
26179341 ATTATATTTAT
1 ATCATATTTAT
26179352 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
ATCATATTTATAAATAAA
Found at i:26179367 original size:22 final size:22
Alignment explanation
Indices: 26179327--26179373 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
26179317 AATAAAATCA
*
26179327 TATTTATATATAAAATTATATT
1 TATTTATATAAAAAATTATATT
26179349 TATTTA-ATAAAAAACTTATATT
1 TATTTATATAAAAAA-TTATATT
26179371 TAT
1 TAT
26179374 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTTATATAAAAAATTATATT
Found at i:26179879 original size:10 final size:10
Alignment explanation
Indices: 26179864--26179932 Score: 95
Period size: 10 Copynumber: 6.9 Consensus size: 10
26179854 AGTTTTGGCT
26179864 TTTATCTTTA
1 TTTATCTTTA
*
26179874 TTTATCTTCA
1 TTTATCTTTA
*
26179884 ATTATCTTTA
1 TTTATCTTTA
26179894 TTTATCTTTA
1 TTTATCTTTA
*
26179904 ATTATCTTTA
1 TTTATCTTTA
26179914 TTTAT-TTGTA
1 TTTATCTT-TA
26179924 TTTATCTTT
1 TTTATCTTT
26179933 TAAAATTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
9 2 0.04
10 47 0.92
11 2 0.04
ACGTcount: A:0.22, C:0.10, G:0.01, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:26189729 original size:42 final size:42
Alignment explanation
Indices: 26189607--26189760 Score: 211
Period size: 42 Copynumber: 3.6 Consensus size: 42
26189597 TACCGTTCCA
*
26189607 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * * *
26189649 ATGCCAATAGCCCAGCTATGATATTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
26189692 ATGCCATATCCTAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
26189734 ATGCCATATCTCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
26189761 AATAAATCTC
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 63 0.65
43 34 0.35
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:26189771 original size:85 final size:85
Alignment explanation
Indices: 26189607--26189771 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 85
26189597 TACCGTTCCA
* *
26189607 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCCAGCTATGATA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGATATGATA
* *
26189672 TTACACGAAGTCTCATATCG
66 TTACAAGAAATCTCATATCG
* * * * *
26189692 ATGCCATATCCTAGATATGGTCTTACACG-AAGTCTCATATTGATGCC-ATATCTCAGATATGGT
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGCCAATAGCCCAGATATGAT
* *
26189755 CTTACAAATAAATCTCA
65 ATTAC-AAGAAATCTCA
26189772 ATAACCCTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 18 0.27
85 49 0.73
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGATATGATA
TTACAAGAAATCTCATATCG
Found at i:26189924 original size:17 final size:17
Alignment explanation
Indices: 26189902--26189947 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
26189892 ATTTCAAAAA
26189902 TATATCATATAAACAAT
1 TATATCATATAAACAAT
* *
26189919 TATATCA-ATTAAGCATT
1 TATATCATA-TAAACAAT
26189936 TATA-CATATAAA
1 TATATCATATAAA
26189948 ATTTAATGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (17 bp):
TATATCATATAAACAAT
Found at i:26190854 original size:18 final size:17
Alignment explanation
Indices: 26190821--26190854 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26190811 AAATTACAGT
*
26190821 TTTTATTATAATTTTGA
1 TTTTATTATAAGTTTGA
26190838 TTTTATTATAGAGTTTG
1 TTTTATTATA-AGTTTG
26190855 TAATATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (17 bp):
TTTTATTATAAGTTTGA
Found at i:26192154 original size:31 final size:31
Alignment explanation
Indices: 26192119--26192263 Score: 149
Period size: 31 Copynumber: 4.7 Consensus size: 31
26192109 TGTGTACAAT
*
26192119 GTGAAAAGCGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
26192150 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
26192181 GTGAAAAGTGGTAGCTCCAGG-TACTTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
* *
26192212 GT-AAATAGTGATAGCTTCGGCTATC-GAGT--
1 GTGAAA-AGTGGTAGCTTCGGCTACCTGA-TCA
26192241 GTGAAAAG-GGATAGCTTCGGCTA
1 GTGAAAAGTGG-TAGCTTCGGCTA
26192264 TCAAATGTGA
Statistics
Matches: 96, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.01
29 16 0.17
30 10 0.10
31 67 0.70
32 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:26192196 original size:62 final size:59
Alignment explanation
Indices: 26192118--26192322 Score: 179
Period size: 58 Copynumber: 3.4 Consensus size: 59
26192108 ATGTGTACAA
*
26192118 TGTGAAAAGCGGTAGCTTCGGCTACCTGATCAGTGAAA-AGT-AGTAGCTTCGGCTACCTGAT
1 TGTGAAAAG-GGTAGCTTCGGCTACCTGATCAGT-AAATAGTGA-TAGCTTCGGCTACC-GAG
* * *
26192179 TAGTGAAAAGTGGTAGCTCCAGG-TACTTGATCAGTAAATAGTGATAGCTTCGGCTATCGAG
1 T-GTGAAAAG-GGTAGCTTC-GGCTACCTGATCAGTAAATAGTGATAGCTTCGGCTACCGAG
* ** * * * *
26192240 TGTGAAAAGGGATAGCTTCGGCTATCAAAT--GTGAAA-AGGGATAGCTTCAGCTATCGAA
1 TGTGAAAAGGG-TAGCTTCGGCTACCTGATCAGT-AAATAGTGATAGCTTCGGCTACCGAG
26192298 TGTGAAAAGGGATAGCTTCGGCTAC
1 TGTGAAAAGGG-TAGCTTCGGCTAC
26192323 TGAATGTGAA
Statistics
Matches: 123, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
58 45 0.37
59 7 0.06
60 18 0.15
61 7 0.06
62 43 0.35
63 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (59 bp):
TGTGAAAAGGGTAGCTTCGGCTACCTGATCAGTAAATAGTGATAGCTTCGGCTACCGAG
Found at i:26192365 original size:29 final size:29
Alignment explanation
Indices: 26192221--26192352 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
26192211 AGTAAATAGT
*
26192221 GATAGCTTCGGCTATCGAGTGTGAAAAGG
1 GATAGCTTCGGCTATCGAATGTGAAAAGG
*
26192250 GATAGCTTCGGCTATCAAATGTGAAAAGG
1 GATAGCTTCGGCTATCGAATGTGAAAAGG
*
26192279 GATAGCTTCAGCTATCGAATGTGAAAAGG
1 GATAGCTTCGGCTATCGAATGTGAAAAGG
26192308 GATAGCTTCGGCTA-CTGAATGTGAAAAGG
1 GATAGCTTCGGCTATC-GAATGTGAAAAGG
*
26192337 GATAGCTTCGACTATC
1 GATAGCTTCGGCTATC
26192353 AAATTTGGAA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
28 1 0.01
29 93 0.98
30 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
GATAGCTTCGGCTATCGAATGTGAAAAGG
Found at i:26192392 original size:33 final size:33
Alignment explanation
Indices: 26192355--26192539 Score: 228
Period size: 33 Copynumber: 5.6 Consensus size: 33
26192345 CGACTATCAA
* *
26192355 ATTTGGAAAGGAAAGGTATACTTTGTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
*
26192388 ATTTGAAAAGGAAATGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
26192421 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
26192454 ATATGAAAAGGAAAGGTATACTTTGTGCATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * * *
26192487 ATATGAAATGGAAAGGTATACCTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
26192520 ACTCGGAAA-GAAAGGTATAC
1 ATTTGAAAAGGAAAGGTATAC
26192540 CTCCAGTGTA
Statistics
Matches: 131, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
32 11 0.08
33 120 0.92
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:26192549 original size:32 final size:33
Alignment explanation
Indices: 26192491--26192568 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
26192481 CATATCATAT
* *** *
26192491 GAAATGGAAAGGTATACCTTGTGTGTACCACTCG
1 GAAAAGGAAAGGTATACCTCCAGTGTACAACT-G
26192525 G-AAA-GAAAGGTATACCTCCAGTGTACAACTG
1 GAAAAGGAAAGGTATACCTCCAGTGTACAACTG
26192556 GAAAAGGAAAGGT
1 GAAAAGGAAAGGT
26192569 CCATCGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
31 2 0.05
32 25 0.68
33 9 0.24
34 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (33 bp):
GAAAAGGAAAGGTATACCTCCAGTGTACAACTG
Found at i:26199509 original size:42 final size:42
Alignment explanation
Indices: 26199401--26199522 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 42
26199391 CATCATACCA
* *
26199401 ATGCCATATCCAAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCAAGATATGGTCTTACACG-AAGTCTCATATCG
* * *
26199443 ATGCCAATATCCTAGATGTGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCAAGATATGGTCTTACACGAAGTCTCATATCG
* * * *
26199486 ATGTCATATCCAATATATAGTCTTACACAAAGTCTCA
1 ATGCCATATCCAAGATATGGTCTTACACGAAGTCTCA
26199523 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 34 0.51
43 33 0.49
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCAAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:26201552 original size:38 final size:38
Alignment explanation
Indices: 26201476--26201557 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 38
26201466 CAGAAACAAT
* * *
26201476 GACATGTTTAACATGTATTCAGTTCATCAGTAATAGTA
1 GACATGTTTAACATGTATCCAGTTCAACAGTAACAGTA
* *
26201514 GACATGTTTAACATGTATCC-GATTTAACCGTAACAGTA
1 GACATGTTTAACATGTATCCAG-TTCAACAGTAACAGTA
*
26201552 GGCATG
1 GACATG
26201558 CAATCTGTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
37 1 0.03
38 36 0.97
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (38 bp):
GACATGTTTAACATGTATCCAGTTCAACAGTAACAGTA
Found at i:26204909 original size:25 final size:25
Alignment explanation
Indices: 26204892--26204942 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26204882 ACAAGCATGA
26204892 ACTAATTTTCTAAATACATAGGGAG
1 ACTAATTTTCTAAATACATAGGGAG
*
26204917 ACTAATTTTCTAAATACCTAGGGAG
1 ACTAATTTTCTAAATACATAGGGAG
26204942 A
1 A
26204943 TGAACCCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (25 bp):
ACTAATTTTCTAAATACATAGGGAG
Found at i:26210524 original size:29 final size:27
Alignment explanation
Indices: 26210506--26210575 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26210496 ATATTAAGTC
26210506 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
26210533 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
26210561 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26210576 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26210569 original size:28 final size:28
Alignment explanation
Indices: 26210506--26210603 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
26210496 ATATTAAGTC
*
26210506 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26210533 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26210561 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26210590 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26210604 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26215248 original size:21 final size:21
Alignment explanation
Indices: 26215222--26215266 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
26215212 ATTGCCTAAG
26215222 TGTAAAAAGTAAAATGTGCTA
1 TGTAAAAAGTAAAATGTGCTA
26215243 TGTAAAAAGTAAAATGTGCTA
1 TGTAAAAAGTAAAATGTGCTA
26215264 TGT
1 TGT
26215267 TAATCCCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.04, G:0.20, T:0.31
Consensus pattern (21 bp):
TGTAAAAAGTAAAATGTGCTA
Found at i:26215862 original size:20 final size:20
Alignment explanation
Indices: 26215837--26215889 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
26215827 ACAGGTGGGA
26215837 CACACGGGCGTGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
26215857 CACACGGGCGTGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
26215877 CACACGGGCGTGT
1 CACACGGGCGTGT
26215890 GCTTTGCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (20 bp):
CACACGGGCGTGTCCCTAAG
Found at i:26217607 original size:19 final size:19
Alignment explanation
Indices: 26217585--26217621 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26217575 AAACCCAAAA
* *
26217585 CCAAATAGTCCCAAAATAT
1 CCAAACAGTCCAAAAATAT
26217604 CCAAACAGTCCAAAAATA
1 CCAAACAGTCCAAAAATA
26217622 ACAAAACACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.27, G:0.05, T:0.16
Consensus pattern (19 bp):
CCAAACAGTCCAAAAATAT
Found at i:26217628 original size:19 final size:19
Alignment explanation
Indices: 26217591--26217629 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26217581 AAAACCAAAT
* * *
26217591 AGTCCCAAAATATCCAAAC
1 AGTCCAAAAATAACAAAAC
26217610 AGTCCAAAAATAACAAAAC
1 AGTCCAAAAATAACAAAAC
26217629 A
1 A
26217630 CCATAAGATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.26, G:0.05, T:0.13
Consensus pattern (19 bp):
AGTCCAAAAATAACAAAAC
Found at i:26218748 original size:12 final size:12
Alignment explanation
Indices: 26218731--26218760 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26218721 GAGCACATAG
*
26218731 CCGTGTCCTAGC
1 CCGTGTCCCAGC
26218743 CCGTGTCCCAGC
1 CCGTGTCCCAGC
26218755 CCGTGT
1 CCGTGT
26218761 TTGATCCCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.43, G:0.27, T:0.23
Consensus pattern (12 bp):
CCGTGTCCCAGC
Found at i:26225895 original size:20 final size:21
Alignment explanation
Indices: 26225870--26225916 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
26225860 ATTAATTATT
*
26225870 TATAAAATT-TAATTTGAATA
1 TATAAAATTATAATTTAAATA
*
26225890 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
26225910 -ATAAAAT
1 TATAAAAT
26225917 AAAACTTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:26229940 original size:19 final size:21
Alignment explanation
Indices: 26229906--26229945 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26229896 TTATTATGAC
26229906 AATTCAAATAATAAA-TGGTG
1 AATTCAAATAATAAATTGGTG
*
26229926 AATTCATAT-ATAAATTGGTG
1 AATTCAAATAATAAATTGGTG
26229946 GCGAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (21 bp):
AATTCAAATAATAAATTGGTG
Found at i:26233516 original size:16 final size:16
Alignment explanation
Indices: 26233495--26233526 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26233485 TATAATTGTC
26233495 ACATAGGTTCAAAACT
1 ACATAGGTTCAAAACT
26233511 ACATAGGTTCAAAACT
1 ACATAGGTTCAAAACT
26233527 TACCAAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (16 bp):
ACATAGGTTCAAAACT
Found at i:26233732 original size:29 final size:29
Alignment explanation
Indices: 26233698--26233771 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
26233688 TAATCAACCA
*
26233698 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
26233727 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
26233756 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
26233772 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:26241322 original size:47 final size:47
Alignment explanation
Indices: 26241269--26242035 Score: 1273
Period size: 47 Copynumber: 16.3 Consensus size: 47
26241259 ACAAGATATG
26241269 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
26241316 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
26241363 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
26241410 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
* *
26241459 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
26241506 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
26241553 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
26241600 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
26241647 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
26241694 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
26241741 TATATGTGACAAGGCCTAATGGCCAATGTGATGACTGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
26241788 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
26241835 TATATGTGACAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
26241882 TATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
26241929 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
26241976 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
26242023 TAAATGTGATAAG
1 TATATGTGATAAG
26242036 TCCCGAAGGG
Statistics
Matches: 670, Mismatches: 48, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
47 626 0.93
49 44 0.07
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:26241537 original size:22 final size:22
Alignment explanation
Indices: 26241509--26241584 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
26241499 AAGTGTATAT
26241509 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
26241531 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
26241555 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
26241578 ATGTGAT
1 ATGTGAT
26241585 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:26244326 original size:21 final size:22
Alignment explanation
Indices: 26244301--26244346 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26244291 TTATTTTGAA
26244301 TTTG-TTGAAAAAGATAAAAAT
1 TTTGTTTGAAAAAGATAAAAAT
* **
26244322 TTTGTTTTAAAAATTTAAAAAT
1 TTTGTTTGAAAAAGATAAAAAT
26244344 TTT
1 TTT
26244347 CCTTTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (22 bp):
TTTGTTTGAAAAAGATAAAAAT
Found at i:26245510 original size:42 final size:42
Alignment explanation
Indices: 26245464--26245638 Score: 230
Period size: 42 Copynumber: 4.2 Consensus size: 42
26245454 CTTTCATATA
*
26245464 CAATGAAAAATAAATGGACCTCCACA-CTCGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCT-GAGCCTCTAAATG
* *
26245506 CAATGAAAAGTAAAT-GATCCTCCACCCCTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGA-CCTCCACACCTGAGCCTCTAAATG
* * *
26245548 CAACGAAAAGTAAATGGACCTCCACACCTGGGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGAGCCTCTAAATG
* *
26245590 CAATGAAAAGTAATTGGACCTCCACACCT-AGGCCCCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGA-GCCTCTAAATG
26245632 CAATGAA
1 CAATGAA
26245639 TGCTTTCCTT
Statistics
Matches: 118, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
41 2 0.02
42 112 0.95
43 4 0.03
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGAGCCTCTAAATG
Found at i:26246068 original size:21 final size:20
Alignment explanation
Indices: 26246044--26246094 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
26246034 TCTATCTAAG
*
26246044 TTTTCTTCTTTTTTTGGTTTC
1 TTTT-TTCTTTTTTTAGTTTC
* *
26246065 TTTTTCTATTTTTTTATTTTC
1 TTTTT-TCTTTTTTTAGTTTC
26246086 TTTTTTCTT
1 TTTTTTCTT
26246095 GATTTAAGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.04, C:0.12, G:0.04, T:0.80
Consensus pattern (20 bp):
TTTTTTCTTTTTTTAGTTTC
Found at i:26250267 original size:22 final size:23
Alignment explanation
Indices: 26250239--26250285 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
26250229 TCCAAGGTTC
26250239 AAATTGTGTAGTGAAACAA-AGA
1 AAATTGTGTAGTGAAACAATAGA
*
26250261 AAATTGTGTAGTGAAAGAATAGA
1 AAATTGTGTAGTGAAACAATAGA
26250284 AA
1 AA
26250286 TCAGCACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.23
Consensus pattern (23 bp):
AAATTGTGTAGTGAAACAATAGA
Found at i:26251364 original size:29 final size:28
Alignment explanation
Indices: 26251322--26251382 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
26251312 GTGAGCATGA
26251322 ATATAAGGTGATTTAGGCCTAACGGGCC
1 ATATAAGGTGATTTAGGCCTAACGGGCC
* * *
26251350 ATATAAAGGTTATTTGGGCCTAATGGGCC
1 ATAT-AAGGTGATTTAGGCCTAACGGGCC
26251379 ATAT
1 ATAT
26251383 GAATAGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTAGGCCTAACGGGCC
Found at i:26251398 original size:29 final size:29
Alignment explanation
Indices: 26251334--26251440 Score: 119
Period size: 29 Copynumber: 3.7 Consensus size: 29
26251324 ATAAGGTGAT
* *
26251334 TTAGGCCTAACGGGCCATAT-AA-AGGTTAT
1 TTAGGCCTAATGGGCCATATGAATAGG--AA
*
26251363 TTGGGCCTAATGGGCCATATGAATAGGAA
1 TTAGGCCTAATGGGCCATATGAATAGGAA
* *
26251392 TTAGGCCCAATGGGCCATATGAATATGAA
1 TTAGGCCTAATGGGCCATATGAATAGGAA
* *
26251421 TTCGGCCTGATGGGCCATAT
1 TTAGGCCTAATGGGCCATAT
26251441 AAATGAGATT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 62 0.93
30 2 0.03
31 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (29 bp):
TTAGGCCTAATGGGCCATATGAATAGGAA
Found at i:26268985 original size:4 final size:4
Alignment explanation
Indices: 26268969--26269002 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
26268959 ACAAATGATC
* *
26268969 GAAT GAGT GAAT GAAT GGAT GAAT GAAT GAAT GA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GA
26269003 TTGATTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (4 bp):
GAAT
Found at i:26269459 original size:15 final size:14
Alignment explanation
Indices: 26269439--26269470 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
26269429 TCTTTTGTGA
26269439 CCTCTTTGTTTTGCT
1 CCTCTTTGTTTTG-T
26269454 CCTCTTTGTTTTGT
1 CCTCTTTGTTTTGT
26269468 CCT
1 CCT
26269471 TAATTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.59
Consensus pattern (14 bp):
CCTCTTTGTTTTGT
Found at i:26277212 original size:19 final size:19
Alignment explanation
Indices: 26277185--26277228 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
26277175 AAAATAGGTT
* *
26277185 GATGCAGCTGAGCGAACTA
1 GATGAAGCTGAACGAACTA
26277204 GATGAAGCTGAACGAACTA
1 GATGAAGCTGAACGAACTA
26277223 GATGAA
1 GATGAA
26277229 TGGCGAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.30, T:0.16
Consensus pattern (19 bp):
GATGAAGCTGAACGAACTA
Found at i:26279257 original size:29 final size:29
Alignment explanation
Indices: 26279218--26279296 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26279208 CTTAATAATC
*
26279218 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26279248 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26279277 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26279297 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26285626 original size:21 final size:21
Alignment explanation
Indices: 26285602--26285645 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26285592 TCTATATGTT
26285602 AAAGGTGTTAAATAGTTATGG
1 AAAGGTGTTAAATAGTTATGG
26285623 AAAGGTGTTAAATAGTTATGG
1 AAAGGTGTTAAATAGTTATGG
26285644 AA
1 AA
26285646 CCTTAATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (21 bp):
AAAGGTGTTAAATAGTTATGG
Found at i:26286701 original size:29 final size:29
Alignment explanation
Indices: 26286668--26286751 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
26286658 GTGAGTTATA
* *
26286668 CTGATTTGGCTTTGGGTCATGCATATCGG
1 CTGATTTGGCTTTAGGCCATGCATATCGG
* *
26286697 CTGATTTGGCTTCAGGCCATGCATATCTG
1 CTGATTTGGCTTTAGGCCATGCATATCGG
*
26286726 CTAATTTGGCTTTAGGCCATG-ATATC
1 CTGATTTGGCTTTAGGCCATGCATATC
26286752 ATTATTTTCG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 5 0.10
29 44 0.90
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (29 bp):
CTGATTTGGCTTTAGGCCATGCATATCGG
Found at i:26293815 original size:27 final size:27
Alignment explanation
Indices: 26293792--26294051 Score: 304
Period size: 27 Copynumber: 9.6 Consensus size: 27
26293782 TTAGTTTACC
* *
26293792 AAATTATCAAAATAACCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
26293819 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
26293846 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
26293873 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
26293900 AAATCACCAAAATACCCCTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
* *
26293927 AAATTACCAAAATACCCCTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
*
26293954 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
*** *
26293981 AAATTACCAAAATACATTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
** * *
26294008 AAATTACCAAAATACCCCTTATTTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
*
26294035 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
26294052 TTGTAGGGTA
Statistics
Matches: 202, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:26293858 original size:54 final size:54
Alignment explanation
Indices: 26293799--26294054 Score: 350
Period size: 54 Copynumber: 4.7 Consensus size: 54
26293789 ACCAAATTAT
* * *
26293799 CAAAATAACCCTGGTTTATAAAATTACTAAAATACCCTTGGTTTATAAAATCAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* *
26293853 CAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* * * * *
26293907 CAAAATACCCCTGGTTTGTGAAATTACCAAAATACCCCTGGTTTGTGAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
** * *
26293961 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACATTTGGTTTGTAAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
** * *
26294015 CAAAATACCCCTTATTTGTGAAATTACCGAAATACCCTTG
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
26294055 TAGGGTAGAA
Statistics
Matches: 181, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
Found at i:26293912 original size:81 final size:81
Alignment explanation
Indices: 26293792--26294054 Score: 359
Period size: 81 Copynumber: 3.2 Consensus size: 81
26293782 TTAGTTTACC
* * * *
26293792 AAATTATCAAAATAACCC-TGGTTTATAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAAT-ACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAA
*
26293856 AATACCCCTAGTTTGTA
65 AATACCCCTAGTTTGTG
* * * *
26293873 AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
26293938 ATACCCCTGGTTTGTG
66 ATACCCCTAGTTTGTG
* * **
26293954 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACATTTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
26294019 ATACCCCTTA-TTTGTG
66 ATACCCC-TAGTTTGTG
*
26294035 AAATTACCGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
26294055 TAGGGTAGAA
Statistics
Matches: 159, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
80 4 0.03
81 154 0.97
82 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGTG
Found at i:26294066 original size:27 final size:27
Alignment explanation
Indices: 26294036--26294231 Score: 268
Period size: 27 Copynumber: 7.3 Consensus size: 27
26294026 TTATTTGTGA
*
26294036 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26294063 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26294090 AATTACTTG-AATACCCGTGTAGGGTAG
1 AATTAC-CGAAATACCCCTGTAGGGTAG
*
26294117 AGTTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26294144 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26294171 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26294198 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26294225 AATTACC
1 AATTACC
26294232 ATTTTACCCC
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26294067 original size:54 final size:52
Alignment explanation
Indices: 26293851--26294232 Score: 202
Period size: 54 Copynumber: 7.1 Consensus size: 52
26293841 TTATAAAATC
** *** * *
26293851 ACCAAAATACCCC-TAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATC
1 ACCAAAATACCCCTTA-TTTGT-AAATTACCGAAATACCCTT-GTGGGTAGAATT
** * * **
26293905 ACCAAAATACCCCTGGTTTGTGAAATTACCAAAATACCCCTGGTTTGT-GAAATT
1 ACCAAAATACCCCTTATTTGT-AAATTACCGAAATA-CCCTTGTGGGTAG-AATT
** * ** ** *
26293959 ACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACATTTGGTTTGTAAAATT
1 ACCAAAATACCCCTTATTTGT-AAATTACCGAAATACCCTT-GTGGGTAGAATT
26294013 ACCAAAATACCCCTTATTTGTGAAATTACCGAAATACCCTTGTAGGGTAGAATT
1 ACCAAAATACCCCTTATTTGT-AAATTACCGAAATACCCTTGT-GGGTAGAATT
* ** * * *
26294067 ATCAAAATACCCCTGTA-GGGTAGAATTACTTG-AATACCCGTGTAGGGTAGAGTT
1 ACCAAAATACCCCT-TATTTGTA-AATTAC-CGAAATACCCTTGT-GGGTAGAATT
* **
26294121 ACCGAAATACCCCTGTA-GGGTAGAATTACCGAAATACTCC-TGTAGGGTAGAATT
1 ACCAAAATACCCCT-TATTTGTA-AATTACCGAAATAC-CCTTGT-GGGTAGAATT
** ** * *
26294175 ACTGAAATACCCCTGTA-GGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATT
1 ACCAAAATACCCCT-TATTTGTA-AATTACCGAAATACCCTTGT-GGGTAGAATT
26294229 ACCA
1 ACCA
26294233 TTTTACCCCT
Statistics
Matches: 278, Mismatches: 38, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.03
54 261 0.94
55 9 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (52 bp):
ACCAAAATACCCCTTATTTGTAAATTACCGAAATACCCTTGTGGGTAGAATT
Found at i:26294094 original size:81 final size:81
Alignment explanation
Indices: 26293978--26294232 Score: 255
Period size: 81 Copynumber: 3.1 Consensus size: 81
26293968 CCCCTGGTTT
** ** * **
26293978 GTAAAATTACCAAAATACATTTGGT-TTGTAAAATTACCAAAATACCCCT-TATTTGT-GAAATT
1 GTAAAATTACCAAAATACACCT-GTAGGGTAGAATTACCAAAATACCCCTGTA-GGGTAG-AATT
26294040 ACCGAAATACCCTTGTAGG
63 ACCGAAATACCCTTGTAGG
* * * *** * *
26294059 GTAGAATTATCAAAATACCCCTGTAGGGTAGAATTACTTGAATACCCGTGTAGGGTAGAGTTACC
1 GTAAAATTACCAAAATACACCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACC
*
26294124 GAAATACCCCTGTAGG
66 GAAATACCCTTGTAGG
* * * **
26294140 GTAGAATTACCGAAATACTCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
1 GTAAAATTACCAAAATACACCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACC
* *
26294205 GAGATACCCTTGTGGG
66 GAAATACCCTTGTAGG
26294221 GTAAAATTACCA
1 GTAAAATTACCA
26294233 TTTTACCCCT
Statistics
Matches: 143, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
80 2 0.01
81 138 0.97
82 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (81 bp):
GTAAAATTACCAAAATACACCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACC
GAAATACCCTTGTAGG
Found at i:26295871 original size:48 final size:48
Alignment explanation
Indices: 26295800--26296235 Score: 746
Period size: 48 Copynumber: 9.0 Consensus size: 48
26295790 AGATAAAAAT
26295800 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
26295848 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
26295896 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
26295944 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26295992 ATATGCATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26296040 ATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26296088 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
26296138 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
26296186 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
26296234 AT
1 AT
26296236 GTGTGTATAT
Statistics
Matches: 373, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 323 0.87
49 4 0.01
50 46 0.12
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:26296429 original size:37 final size:37
Alignment explanation
Indices: 26296377--26296478 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
26296367 GAAATATATT
26296377 CTGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CTGGGTAAGACCCGATGACTACGTGTGGAGATTATG-C
*
26296415 C-GGGTAAGACCCGATGACTACGTGTGGAGATTTTGC
1 CTGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
26296451 CTGGGTAAGACCCGATAACTACGTGTGG
1 CTGGGTAAGACCCGATGACTACGTGTGG
26296479 GGACTATTCG
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
36 2 0.03
37 58 0.95
38 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
CTGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:26297704 original size:27 final size:27
Alignment explanation
Indices: 26297674--26297738 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
26297664 ATTCTATTAA
* * *
26297674 GTGGCTTTGCCA-TATTATCTGATTCTG
1 GTGGCTTTGCCACAAATATCT-ATACTG
*
26297701 GTGGCTATGCCACAAATATCTATACTG
1 GTGGCTTTGCCACAAATATCTATACTG
*
26297728 GAGGCTTTGCC
1 GTGGCTTTGCC
26297739 TCAACTTACT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 25 0.81
28 6 0.19
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTTTGCCACAAATATCTATACTG
Found at i:26297919 original size:6 final size:6
Alignment explanation
Indices: 26297905--26297988 Score: 64
Period size: 6 Copynumber: 13.7 Consensus size: 6
26297895 TTCTGTTACT
* * *
26297905 TGATGC TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * *
26297954 TGATTC TG-TCACC TAATTC TGATTC TTATTC TGAT
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGAT
26297989 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
5 3 0.05
6 51 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:26297932 original size:31 final size:31
Alignment explanation
Indices: 26297889--26297988 Score: 119
Period size: 31 Copynumber: 3.2 Consensus size: 31
26297879 ACATTCTAAT
* * *
26297889 TTTTTATTCTGTTACTTGATGCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
26297920 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * * *
26297951 TTCTGATTCTGTCACCTAATTCTGATTCTTA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
26297982 TTCTGAT
1 TTTTGAT
26297989 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:26301518 original size:27 final size:28
Alignment explanation
Indices: 26301434--26301531 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
26301424 CATGAGATTG
* * * *
26301434 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
26301463 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
26301491 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26301518 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26301532 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26301542 original size:27 final size:27
Alignment explanation
Indices: 26301462--26301544 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
26301452 TAAATTGTAC
* *
26301462 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
26301490 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
26301517 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
26301544 A
1 A
26301545 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:26301545 original size:29 final size:27
Alignment explanation
Indices: 26301434--26301545 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
26301424 CATGAGATTG
** * *
26301434 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
26301463 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
26301491 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
26301518 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
26301546 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:26303454 original size:27 final size:27
Alignment explanation
Indices: 26303424--26303710 Score: 376
Period size: 27 Copynumber: 10.6 Consensus size: 27
26303414 TTAGTTTACC
*
26303424 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
26303451 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26303478 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
26303505 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26303532 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
26303559 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
26303586 AAATTACCAAAATACCCCTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
26303613 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26303640 AAATTACAAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
26303667 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26303694 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
26303711 TTGTAGGGTA
Statistics
Matches: 230, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 230 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:26303725 original size:27 final size:27
Alignment explanation
Indices: 26303695--26303890 Score: 293
Period size: 27 Copynumber: 7.3 Consensus size: 27
26303685 TAATTTGTGA
* *
26303695 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26303722 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26303749 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26303776 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26303803 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26303830 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26303857 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26303884 AATTACC
1 AATTACC
26303891 ATTTTACCCC
Statistics
Matches: 153, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26303726 original size:54 final size:55
Alignment explanation
Indices: 26303614--26303891 Score: 198
Period size: 54 Copynumber: 5.1 Consensus size: 55
26303604 TGGTTTACAA
** * ** * ** *
26303614 AATTACCAAAATACCCCTGGTTTGT-AAAATTACAAAAATACCCTTGGT-TTGTAA
1 AATTACCAAAATACCCCTAATTTGTGAGAATTACCGAAATACCCCT-GTAGGGTAG
* *
26303668 AATTACCAAAATACCCCTAATTTGTGA-AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTAATTTGTGAGAATTACCGAAATACCCCTGTAGGGTAG
** * * *
26303722 AATTACCGGAATACCCCT--GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTAATTTGTG-AGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
26303776 AATTATCGAAATACCCCTGTAA--GGT-AGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCC--TAATTTGTGAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * * *
26303830 AATTACCAAAATACCCCT--GTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTAATTTGTG-AGAATTACCGAAATACCCCTGTAGGGTAG
26303884 AATTACCA
1 AATTACCA
26303892 TTTTACCCCT
Statistics
Matches: 183, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
52 5 0.03
53 3 0.02
54 172 0.94
55 1 0.01
56 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (55 bp):
AATTACCAAAATACCCCTAATTTGTGAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:26304271 original size:22 final size:22
Alignment explanation
Indices: 26304237--26304296 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
26304227 AAATGTTATC
26304237 GATGGCTGT-GTGCCAACCTAAA
1 GATGGCT-TCGTGCCAACCTAAA
* * * * *
26304259 TATGGCTTCGTGCCATCTTGAC
1 GATGGCTTCGTGCCAACCTAAA
26304281 GATGGCTTCGTGCCAA
1 GATGGCTTCGTGCCAA
26304297 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.28
Consensus pattern (22 bp):
GATGGCTTCGTGCCAACCTAAA
Found at i:26304699 original size:6 final size:6
Alignment explanation
Indices: 26304684--26304805 Score: 72
Period size: 6 Copynumber: 19.8 Consensus size: 6
26304674 ATTCTGTTAC
* * *
26304684 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * * * *
26304733 CTAATT CTG-TCA CATAATT CTGATT CTGATT CTG-TCAC CTAATT TTGATT
1 CTGATT CTGAT-T C-TGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT
26304783 CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGA-TT CTGAT
26304806 AAAATGGGTT
Statistics
Matches: 88, Mismatches: 17, Indels: 22
0.69 0.13 0.17
Matches are distributed among these distances:
5 5 0.06
6 72 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:26304712 original size:31 final size:31
Alignment explanation
Indices: 26304661--26304763 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
26304651 TTGCATTCAC
*
26304661 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTAATTCTGTTACCTGATACTG
*
26304693 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTAATTCTGTTACCTGATACTG
* * * * *
26304724 ATTCTGATTCTAATTCTGTCACATAATTCTG
1 ATTCTGATTTTAATTCTGTTACCTGATACTG
26304755 ATTCTGATT
1 ATTCTGATT
26304764 CTGTCACCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 57 0.89
32 7 0.11
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTAATTCTGTTACCTGATACTG
Found at i:26304752 original size:25 final size:25
Alignment explanation
Indices: 26304724--26304791 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
26304714 CCTGATACTG
*
26304724 ATTCTGATTCTAATTCTGTCACATA
1 ATTCTGATTCTGATTCTGTCACATA
*
26304749 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACATA
*
26304774 ATTTTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
26304792 ATTCTAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACATA
Found at i:26304784 original size:31 final size:28
Alignment explanation
Indices: 26304691--26304796 Score: 101
Period size: 31 Copynumber: 3.7 Consensus size: 28
26304681 TACCTGATAC
* *
26304691 TGATTCTGATTTTGATTCTGTTACCTGAT
1 TGATTCTGATTCTGATTCTGTCACCT-AT
*
26304720 ACTGATTCTGATTCTAATTCTGTCA-C-A-
1 --TGATTCTGATTCTGATTCTGTCACCTAT
*
26304747 TAATTCTGATTCTGATTCTGTCACCTAATTT
1 TGATTCTGATTCTGATTCTGTCACCT-A--T
26304778 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCT
26304797 AGTTCTGATA
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
25 21 0.33
26 1 0.02
28 2 0.03
30 1 0.02
31 38 0.60
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (28 bp):
TGATTCTGATTCTGATTCTGTCACCTAT
Found at i:26307004 original size:42 final size:42
Alignment explanation
Indices: 26306914--26307057 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 42
26306904 GTCCCAGGCG
* *
26306914 TGGTCTTACATGTAATCAAATATCGATGCCATTAT-CCCAA-ACA
1 TGGTCTTACACGAAATCAAATAT-GATGCCA--ATGCCCAAGACA
*
26306957 GGGTCTTACACGAAATCAAATATGATGCCAATGCCCAAGACA
1 TGGTCTTACACGAAATCAAATATGATGCCAATGCCCAAGACA
* * **
26306999 TGGTCTTACACATAAATCATAAGT-TGATGCCAACGTCCC-AGATG
1 TGGTCTTACAC-GAAATCA-AA-TATGATGCCAATG-CCCAAGACA
26307043 TGGTCTTACACGAAA
1 TGGTCTTACACGAAA
26307058 ACACATATTG
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
40 2 0.02
41 5 0.06
42 20 0.23
43 29 0.34
44 26 0.30
45 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATATGATGCCAATGCCCAAGACA
Found at i:26307047 original size:44 final size:42
Alignment explanation
Indices: 26306896--26307057 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 42
26306886 AGCTCGTACA
* * * *
26306896 ATGCCAACGTCCC-AGGCGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACG-CCCAAGACATGGTCTTACACGAAATCAAATAT-G
* *
26306939 ATGCCATTA-TCCCAA-ACAGGGTCTTACACGAAATCAAATATG
1 ATGCCA--ACGCCCAAGACATGGTCTTACACGAAATCAAATATG
* *
26306981 ATGCCAATGCCCAAGACATGGTCTTACACATAAATCATAAGT-TG
1 ATGCCAACGCCCAAGACATGGTCTTACAC-GAAATCA-AA-TATG
**
26307025 ATGCCAACGTCCC-AGATGTGGTCTTACACGAAA
1 ATGCCAACG-CCCAAGACATGGTCTTACACGAAA
26307058 ACACATATTG
Statistics
Matches: 97, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
41 5 0.05
42 20 0.21
43 39 0.40
44 27 0.28
45 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGCCCAAGACATGGTCTTACACGAAATCAAATATG
Found at i:26310521 original size:5 final size:5
Alignment explanation
Indices: 26310511--26310535 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26310501 CATGGAGACA
26310511 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
26310536 GGTCAAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:26311597 original size:70 final size:70
Alignment explanation
Indices: 26311514--26311798 Score: 489
Period size: 70 Copynumber: 4.1 Consensus size: 70
26311504 AGTTTATTAT
* *
26311514 TAATTAATATGCTGCTGTTATACTGTAAATTATTGGCTCTCCAAATTAGGACAAATTCATGGTGC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
26311579 TTAGC
66 TTAGC
* *
26311584 TAATTAATATGCTGCTGTAATATTGTAAATTATTGGCTATCCAAATTAGGACAAATTCATGGTGC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
26311649 TTAGC
66 TTAGC
*
26311654 TAATTAATATGCTGCTGTTATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
26311719 TTAGC
66 TTAGC
* * * *
26311724 TAATTAATATGCTACTGTAATATTGTAAATTATTGGCTGTCCAAATTAGTACAAATTCATGGTGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
26311789 TTAGC
66 TTAGC
26311794 TAATT
1 TAATT
26311799 CAAGGAAGAT
Statistics
Matches: 204, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 204 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGTGC
TTAGC
Found at i:26312265 original size:48 final size:47
Alignment explanation
Indices: 26312193--26312417 Score: 227
Period size: 48 Copynumber: 4.7 Consensus size: 47
26312183 TATGTGTGCT
* * * **
26312193 AGTGTAAGAACATGTTTGGAACATGGCATCAACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-TATGAGAGCC
* * *** * *
26312241 AGTGTAAGACCATGTCTGGGACATGACATTGGCGTTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATATGAG-AGCC
26312289 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-TATGAGAGCC
* * * *
26312337 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATATGAGAGCC
* * *
26312385 AATGTAAGACCATGTCTAGGACATAGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
26312418 AATTTACCCT
Statistics
Matches: 145, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.01
48 140 0.97
49 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATATGAGAGCC
Found at i:26312344 original size:96 final size:95
Alignment explanation
Indices: 26312180--26312417 Score: 305
Period size: 96 Copynumber: 2.5 Consensus size: 95
26312170 GACATTTGGG
* * * * **
26312180 TGATATGTGTGCTAGTGTAAGAACATGTTTGGAACATGGCATCAACCACATTATGAGAGCCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
* *
26312245 TAAGACCATGTCTGGGACATGACATTGGCGT
65 TAAGACCATGTCTGGGACATGACATCGGCCT
26312276 TGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
* *
26312341 TAAGACCATGTTTGGGACATGGCATCGGCCT
65 TAAGACCATGTCTGGGACATGACATCGGCCT
* * * * * *
26312372 CGACATGTGAGCCAATGTAAGACCATGTCTAGGACATAGCATCGGC
1 TGATATGTGA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
26312418 AATTTACCCT
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 1 0.01
96 123 0.99
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (95 bp):
TGATATGTGACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGT
AAGACCATGTCTGGGACATGACATCGGCCT
Found at i:26316419 original size:21 final size:22
Alignment explanation
Indices: 26316395--26316438 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26316385 TTTTTTTTGC
*
26316395 AAAATTAAAT-TTTTCTTAAAA
1 AAAATCAAATCTTTTCTTAAAA
**
26316416 AAAATCACTTCTTTTCTTAAAA
1 AAAATCAAATCTTTTCTTAAAA
26316438 A
1 A
26316439 TTAAAGCTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATCAAATCTTTTCTTAAAA
Found at i:26316539 original size:23 final size:24
Alignment explanation
Indices: 26316513--26316571 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
26316503 CTTTAAAATG
26316513 ACAAAAAAAATATT-T-TTATTTTT
1 ACAAAAAAAATATTCTCTT-TTTTT
26316536 ACAAATATAAAA-ATTCTCTTTTTTT
1 ACAAA-A-AAAATATTCTCTTTTTTT
*
26316561 AAAAAAAAAAT
1 ACAAAAAAAAT
26316572 CACTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
23 9 0.30
24 5 0.17
25 14 0.47
26 2 0.07
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.41
Consensus pattern (24 bp):
ACAAAAAAAATATTCTCTTTTTTT
Found at i:26316704 original size:151 final size:151
Alignment explanation
Indices: 26316412--26316708 Score: 400
Period size: 151 Copynumber: 2.0 Consensus size: 151
26316402 AATTTTTCTT
*
26316412 AAAAAAAATCACTTCTTTTCTTAAAAATTAAAGCTTCATTTCAAATTAGTTGAAAAAGATCAAAA
1 AAAAAAAATCACTTCTTTTCTTAAAAATTAAAGCTTCATTTCAAAGTAGTTGAAAAAGATCAAAA
* * * * *
26316477 CTTTGTTTTCAAAATTTAAAATTTTCCTTTAAAATGACAAAAAAAATATTTTTATTTTTACAAAT
66 ATTTATTTTAAAAATTTAAAATTTTCCTTTAAAATGACAAAAAAAAGATTTTTATTTTGACAAAT
26316542 ATAAAAATTCTCTTTTTTTAA
131 ATAAAAATTCTCTTTTTTTAA
* * * ** *
26316563 AAAAAAAATCACTAT-TTTTCTTCAAAATTAAAGTTTTATTTTGAAGTAGTTGAAAAAGTTCAAA
1 AAAAAAAATCACT-TCTTTTCTTAAAAATTAAAGCTTCATTTCAAAGTAGTTGAAAAAGATCAAA
* * *
26316627 AATTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAGAAAATAGATTTTTATTTTGA-AA
65 AATTTATTTTAAAAATTTAAAATTTTCCTTTAAAATGAC-AAAAAAAAGATTTTTATTTTGACAA
* **
26316691 ATCTAAACTTTCTCTTTT
129 ATATAAAAATTCTCTTTT
26316709 AAAACAAAAA
Statistics
Matches: 126, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
151 107 0.85
152 19 0.15
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (151 bp):
AAAAAAAATCACTTCTTTTCTTAAAAATTAAAGCTTCATTTCAAAGTAGTTGAAAAAGATCAAAA
ATTTATTTTAAAAATTTAAAATTTTCCTTTAAAATGACAAAAAAAAGATTTTTATTTTGACAAAT
ATAAAAATTCTCTTTTTTTAA
Found at i:26321450 original size:20 final size:20
Alignment explanation
Indices: 26321425--26321469 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
26321415 GAACTATTCT
*
26321425 ATTTACTTTCTTACCATTTC
1 ATTTACTTACTTACCATTTC
*
26321445 ATTTACTTACTTTCCATTTC
1 ATTTACTTACTTACCATTTC
26321465 ATTTA
1 ATTTA
26321470 TTTAGCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTACTTACTTACCATTTC
Done.