Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 85 of 332
Found at i:26642119 original size:82 final size:81
Alignment explanation
Indices: 26642001--26642156 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26641991 TGCTATACAA
* * *
26642001 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26642066 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26642083 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26642147 CACTTAGTGC
65 CACTTAGTGC
26642157 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26649554 original size:39 final size:40
Alignment explanation
Indices: 26649461--26649623 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
26649451 TGGATGATAA
** * *
26649461 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTAACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
26649501 CCGGGATAAGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26649540 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26649580 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
26649620 CCGG
1 CCGG
26649624 TTAAATTCCG
Statistics
Matches: 114, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 37 0.32
40 76 0.67
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26649592 original size:79 final size:80
Alignment explanation
Indices: 26649461--26649623 Score: 233
Period size: 79 Copynumber: 2.0 Consensus size: 80
26649451 TGGATGATAA
*
26649461 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTAACTAGTTCCGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTAACTAGTTCCGGGATAAGTCCCGAAGGCATTTG
*
26649526 TGC-AGTTA-CTATAT
66 AGCGAG-TAGCTATAT
** * *
26649540 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTAACTAGT-TCCGGGATAAGTCCCGAAGGCATTT
26649604 GAGCGAGTAGCTATAT
65 GAGCGAGTAGCTATAT
26649620 CCGG
1 CCGG
26649624 TTAAATTCCG
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 62 0.83
80 12 0.16
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTAACTAGTTCCGGGATAAGTCCCGAAGGCATTTG
AGCGAGTAGCTATAT
Found at i:26657586 original size:40 final size:40
Alignment explanation
Indices: 26657531--26657748 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
26657521 TGGATGATAA
** * *
26657531 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
26657571 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26657611 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26657651 CCGGGCTATGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26657691 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26657731 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26657749 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26670470 original size:27 final size:27
Alignment explanation
Indices: 26670439--26670616 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26670429 TAAATTGTAC
26670439 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26670466 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26670492 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26670520 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26670548 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26670575 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26670602 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26670617 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26670553 original size:82 final size:81
Alignment explanation
Indices: 26670440--26670595 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26670430 AAATTGTACA
* *
26670440 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26670504 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26670521 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26670586 TGCGAGTTGA
65 TGCGAATTGA
26670596 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26670607 original size:82 final size:81
Alignment explanation
Indices: 26670436--26670616 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26670426 GATTAAATTG
* *
26670436 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26670501 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26670517 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26670581 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26670599 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26670617 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26672659 original size:29 final size:30
Alignment explanation
Indices: 26672593--26672662 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
26672583 TAAGTCTTCA
*
26672593 AAAATAAAGAAGAGAAAATAAAATTTAAAT
1 AAAATAAAGAAGAGAAAATAAAATTCAAAT
* *
26672623 AAATATAAA-AATA-AAAATAAAATTCATAGT
1 AAA-ATAAAGAAGAGAAAATAAAATTCA-AAT
26672653 AAAATAAAGA
1 AAAATAAAGA
26672663 GACTCAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 17 0.50
30 12 0.35
31 5 0.15
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.21
Consensus pattern (30 bp):
AAAATAAAGAAGAGAAAATAAAATTCAAAT
Found at i:26672805 original size:15 final size:15
Alignment explanation
Indices: 26672768--26672798 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26672758 ATCTAACTGT
26672768 TCAAAGCACTGCTGC
1 TCAAAGCACTGCTGC
26672783 TCAAAGCACTGCTGC
1 TCAAAGCACTGCTGC
26672798 T
1 T
26672799 TTAAGCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (15 bp):
TCAAAGCACTGCTGC
Found at i:26674474 original size:17 final size:18
Alignment explanation
Indices: 26674452--26674485 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26674442 GAAAAAGAAA
*
26674452 TAAGGGA-AAGGGAGGGG
1 TAAGGGAGAAGAGAGGGG
26674469 TAAGGGAGAAGAGAGGG
1 TAAGGGAGAAGAGAGGG
26674486 TCAGGCGGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.56, T:0.06
Consensus pattern (18 bp):
TAAGGGAGAAGAGAGGGG
Found at i:26690418 original size:42 final size:42
Alignment explanation
Indices: 26690359--26690444 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
26690349 TAGAAATGTA
26690359 AAGATTTTCTCGAGTTTAAACAAGGCTGTATGTCTATCACAG
1 AAGATTTTCTCGAGTTTAAACAAGGCTGTATGTCTATCACAG
26690401 AAGATTTTCTCGAGTTTAAACAAGGCTGTATGTCTATCACAG
1 AAGATTTTCTCGAGTTTAAACAAGGCTGTATGTCTATCACAG
26690443 AA
1 AA
26690445 TATGAGCGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (42 bp):
AAGATTTTCTCGAGTTTAAACAAGGCTGTATGTCTATCACAG
Found at i:26691918 original size:26 final size:26
Alignment explanation
Indices: 26691889--26691938 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26691879 GGTACATGAG
**
26691889 AATGTGTATTGATTATCGTCAGTTAA
1 AATGTGTATCAATTATCGTCAGTTAA
26691915 AATGTGTATCAATTATCGTCAGTT
1 AATGTGTATCAATTATCGTCAGTT
26691939 GAATAAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (26 bp):
AATGTGTATCAATTATCGTCAGTTAA
Found at i:26700755 original size:21 final size:20
Alignment explanation
Indices: 26700717--26700756 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26700707 CACTTGAAGC
*
26700717 AGGGCACACGCCCGTGTGGA
1 AGGGCACACGCCCATGTGGA
*
26700737 AGGGCAACACGCCTATGTGG
1 AGGGC-ACACGCCCATGTGG
26700757 CCATTCTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGGA
Found at i:26702065 original size:49 final size:49
Alignment explanation
Indices: 26702012--26702174 Score: 142
Period size: 44 Copynumber: 3.4 Consensus size: 49
26702002 TTCGATGACG
* *
26702012 TGTCCCAGATAGCTCTTACACTAACTTTCATATATCAAGGCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGCCGATGCCA
* * * **
26702061 TGTCCCAGACAGGTCTTACACTGAC--ACACA-A-CAA-GCTAATGCCA
1 TGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGCCGATGCCA
** * * * *
26702105 TGTCTGAGATAGGTCTTACACTAGCTTGT-ATATCTCGAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTAACTT-TCATATATCAAGGCCGATGCCA
*
26702153 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
26702175 GGCTCACATA
Statistics
Matches: 86, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
44 28 0.33
45 3 0.03
46 3 0.03
47 3 0.03
48 22 0.26
49 27 0.31
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGCCGATGCCA
Found at i:26707299 original size:46 final size:46
Alignment explanation
Indices: 26707232--26707401 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
26707222 AACCCGCCCC
* * *
26707232 TAAGTGAACTCGAACTCAACTCAACGAGCTCAGGCGTTTGCATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTTGCATCTA
* * *
26707278 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-T-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC-ATTTGCATCTA
* * * * *
26707326 TCA-CGAACTTGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CATTTGCATCTA
*
26707371 TAAGTGAACTCGGACTCAACTGAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
26707402 GGATGCTCAA
Statistics
Matches: 98, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 53 0.54
47 25 0.26
48 3 0.03
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTTGCATCTA
Found at i:26707423 original size:46 final size:43
Alignment explanation
Indices: 26707280--26707415 Score: 114
Period size: 47 Copynumber: 3.0 Consensus size: 43
26707270 TGCATCTATA
26707280 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
26707327 CA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
*
26707373 AGTGAACTCGGACTCAACTGAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
26707416 CCTAGTGACA
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 27 0.38
47 29 0.40
48 1 0.01
49 4 0.06
50 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:26718465 original size:18 final size:17
Alignment explanation
Indices: 26718416--26718472 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 17
26718406 CCCATGCTTA
*
26718416 AATTTTT-ATTTTTGATG
1 AATTTTTGATTGTTG-TG
26718433 AATTTTTGA--GTTGTG
1 AATTTTTGATTGTTGTG
26718448 CAATTTTTGATTGTTGTG
1 -AATTTTTGATTGTTGTG
26718466 -ATTTTTG
1 AATTTTTG
26718473 GTGTTTGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 2 0.06
16 19 0.54
17 7 0.20
18 7 0.20
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (17 bp):
AATTTTTGATTGTTGTG
Found at i:26720726 original size:55 final size:55
Alignment explanation
Indices: 26720637--26720762 Score: 159
Period size: 55 Copynumber: 2.3 Consensus size: 55
26720627 ATATTAAGTC
* *
26720637 CGCACACTCAGTGCTATTAATCAACTCGCACACTTA-G-TGCTACATAGTCAAACT
1 CGCACACTTAGTGCTAATAATCAACTCGCACACTTAGGATGCTACATAGTC-AACT
* *
26720691 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGTATGCTACATAGTCAATT
1 CGCACACTTAGTGCTA-ATAATCAACTCGCACACTTAG-G-ATGCTACATAGTCAACT
26720749 CGCACAC-TAGTGCT
1 CGCACACTTAGTGCT
26720763 GCACAATTTA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
54 15 0.24
55 18 0.29
57 8 0.13
58 10 0.16
59 12 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTAATAATCAACTCGCACACTTAGGATGCTACATAGTCAACT
Found at i:26720740 original size:31 final size:27
Alignment explanation
Indices: 26720637--26720762 Score: 157
Period size: 28 Copynumber: 4.6 Consensus size: 27
26720627 ATATTAAGTC
* * *
26720637 CGCACACTCAGTGCTA-TTAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26720663 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
26720691 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26720718 CGCACACTTAGTGTATGCTACATAGTCAATT
1 CGCACACTTA--G--TGCTACATAGTCAACT
26720749 CGCACAC-TAGTGCT
1 CGCACACTTAGTGCT
26720763 GCACAATTTA
Statistics
Matches: 90, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
26 19 0.21
27 18 0.20
28 28 0.31
29 1 0.01
30 2 0.02
31 22 0.24
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26720781 original size:59 final size:59
Alignment explanation
Indices: 26720674--26720789 Score: 139
Period size: 59 Copynumber: 2.0 Consensus size: 59
26720664 GCACACTTAG
* * *
26720674 TGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGTA
1 TGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTAAACCCGCACACGTAGTGTA
* *
26720733 TGCTACATAGTC-AATTCGCACAC-TAGTGCTGCACA-ATTTAAACCCGCACACGTAGTG
1 TGCTACATAGTCAAACTCGCACACTTAGTGCT--ACATA-GTAAACCCGCACACGTAGTG
26720790 CCAATCTCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
57 7 0.14
58 11 0.22
59 31 0.63
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (59 bp):
TGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTAAACCCGCACACGTAGTGTA
Found at i:26727051 original size:26 final size:26
Alignment explanation
Indices: 26727021--26727072 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26727011 ACCAATGAAC
*
26727021 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
26727047 CGGGGAATCAGCACATAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
26727073 TTCACATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:26728473 original size:39 final size:40
Alignment explanation
Indices: 26728373--26728555 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
26728363 ATTTGAATGA
*
26728373 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
26728413 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
26728453 TATCC-GGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
26728492 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* *
26728532 TACCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCA
26728556 ATTGTGCTTG
Statistics
Matches: 134, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 31 0.23
40 103 0.77
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:26728510 original size:79 final size:80
Alignment explanation
Indices: 26728372--26728562 Score: 235
Period size: 79 Copynumber: 2.4 Consensus size: 80
26728362 CATTTGAATG
* * * * *
26728372 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
26728437 TTTATGCTAG-TGATT
66 TTTATGCGAGTTG-CT
*
26728452 TTATCC-GGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
*
26728515 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTTGCT
* * *
26728531 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
26728563 TTGTGGTTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
79 62 0.65
80 33 0.35
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTATGCGAGTTGCT
Found at i:26736611 original size:40 final size:40
Alignment explanation
Indices: 26736463--26736653 Score: 206
Period size: 40 Copynumber: 4.8 Consensus size: 40
26736453 CATTTGAATG
* * **
26736463 ATATCCGGGCTAAGTCCCGAAGGCATTTATGTTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
26736503 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
26736543 TTATCCGGGCTCAGACCTGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
26736583 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * *
26736623 ATACCCGGGTTAAGACCCGAAGGCAATTGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTG
26736654 ATTGTGGTTA
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
40 131 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:26736666 original size:80 final size:79
Alignment explanation
Indices: 26736467--26736674 Score: 195
Period size: 80 Copynumber: 2.6 Consensus size: 79
26736457 TGAATGATAT
* * * * *
26736467 CCGGGCTAAGTCCCGAAGGCATTTATGTTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGTT-GTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* * * * *
26736532 TGCTAGTGATTTTAT
65 CGCGAGTGACTATAC
* * ** * * *
26736547 CCGGGCTCAGACCTGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTG-TTGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
26736612 CGCGAGTTG-CTATAC
65 CGCGAG-TGACTATAC
* *
26736627 CCGGGTTAAGACCCGAAGGCAATTGTGATTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTG-TTGTGGTTATATCCGGGCTAA
26736675 ATTCTGAAGA
Statistics
Matches: 100, Mismatches: 26, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
79 6 0.06
80 92 0.92
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGTTGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTAC
GCGAGTGACTATAC
Found at i:26741040 original size:40 final size:40
Alignment explanation
Indices: 26740962--26741185 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
26740952 ACCCAAGTAT
* * *
26740962 CTTCGGGATTTAG-CCGGATATAG-CAACTCGAACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
26741001 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26741041 CTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26741081 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
26741124 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26741164 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
26741186 CATTCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26741158 original size:83 final size:79
Alignment explanation
Indices: 26740962--26741185 Score: 279
Period size: 83 Copynumber: 2.8 Consensus size: 79
26740952 ACCCAAGTAT
* * * * *
26740962 CTTCGGGATTTAGCCGGATATAGCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
**
26741027 ACTAGCATGAATGC
66 ACTAGCACAAATGC
* * *
26741041 CTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
26741105 CAACTACTCGCACAAATGC
65 C-ACTA---GCACAAATGC
* *
26741124 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCC-GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26741186 CATTCGAATA
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.38
82 2 0.02
83 62 0.50
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:26753031 original size:49 final size:49
Alignment explanation
Indices: 26752968--26753198 Score: 248
Period size: 49 Copynumber: 4.7 Consensus size: 49
26752958 CTGGTACGCA
* * *
26752968 TAGTAGCATGCACTTAGTACTACACTTGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * ** * *
26753017 TAATAGCCTGCACTTAGTACTACACATATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * * * *
26753067 TAGTAGCC-GCACTTTGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* *
26753117 TAGTAGCCTGCACTTAGTACTACTCATGTGAACAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
26753166 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
26753199 TCACAATAGA
Statistics
Matches: 144, Mismatches: 34, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
49 88 0.61
50 37 0.26
51 19 0.13
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:26755028 original size:66 final size:65
Alignment explanation
Indices: 26754901--26755028 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 65
26754891 TACTATGTGT
* * *
26754901 ACACCATGTAGACAAGAGAGCTAAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTAAGGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAAG
26754966 G
65 G
* * *
26754967 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTAAG-GATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
26755029 TTCACCATGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
66 47 0.87
67 5 0.09
68 2 0.04
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTAAGGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:26757333 original size:13 final size:13
Alignment explanation
Indices: 26757317--26757341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26757307 CGAACGAAAT
26757317 TTTCATGAAATCA
1 TTTCATGAAATCA
26757330 TTTCATGAAATC
1 TTTCATGAAATC
26757342 GTAGACCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TTTCATGAAATCA
Found at i:26759608 original size:46 final size:46
Alignment explanation
Indices: 26759558--26759677 Score: 213
Period size: 46 Copynumber: 2.6 Consensus size: 46
26759548 TGGTTGAGCA
*
26759558 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
26759604 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
26759650 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
26759678 TTTGCTTATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:26759914 original size:9 final size:10
Alignment explanation
Indices: 26759886--26759917 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
26759876 GGTTGAGTAT
26759886 TGATGAAAAA
1 TGATGAAAAA
26759896 TGATGAAAAA
1 TGATGAAAAA
*
26759906 TGATTAAAAA
1 TGATGAAAAA
26759916 TG
1 TG
26759918 TGATATGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (10 bp):
TGATGAAAAA
Found at i:26763998 original size:49 final size:49
Alignment explanation
Indices: 26763942--26764172 Score: 241
Period size: 49 Copynumber: 4.7 Consensus size: 49
26763932 ATGGTACGCA
*
26763942 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** * * *
26763991 TAGTAGCCTACACTTAGTACTACAC-TCGTGACCTAACAATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACAT-GTGACC-AATTATCCGGTACACG
* ** * ** * *
26764041 CAGTAGCC-GCACTTAGTACTACACACATGATCGAAGTTATTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* *
26764091 TAGTAGCCAGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
26764140 TAGTAGCCTGTACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
26764173 TCACAATAGA
Statistics
Matches: 143, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
48 1 0.01
49 89 0.62
50 34 0.24
51 19 0.13
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:26764155 original size:100 final size:99
Alignment explanation
Indices: 26763942--26764172 Score: 245
Period size: 100 Copynumber: 2.3 Consensus size: 99
26763932 ATGGTACGCA
** *
26763942 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACATGACCAATTATCCAGTACACATAGTAGCCTACACTTA
* * *
26764007 GTACTACACTCGTGACCTAACAATCTGATACATG
66 GTACTACACTCGCGACCTAACAATCCGATACACG
* * *** *
26764041 CAGTAGCC-GCACTTAGTACTACACACATGATCGAAGTTATTGGGTACGCATAGTAGCC-AGCAC
1 TAGTAGCCTGCACTTAGTACTACACACATGA-CCAA-TTATCCAGTACACATAGTAGCCTA-CAC
** *
26764104 TTAGTACTACACAT-GCGACC-AATTATCCGGTACACG
63 TTAGTACTACAC-TCGCGACCTAACAATCCGATACACG
* *
26764140 TAGTAGCCTGTACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACATGACC
26764173 TCACAATAGA
Statistics
Matches: 108, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
98 20 0.19
99 30 0.28
100 57 0.53
101 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCAATTATCCAGTACACATAGTAGCCTACACTTA
GTACTACACTCGCGACCTAACAATCCGATACACG
Found at i:26772133 original size:12 final size:13
Alignment explanation
Indices: 26772111--26772139 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26772101 TAAACTAGCA
26772111 AAAATGAAAACCC
1 AAAATGAAAACCC
26772124 AAAA-GAAAACCC
1 AAAATGAAAACCC
26772136 AAAA
1 AAAA
26772140 ACTATTCGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.21, G:0.07, T:0.03
Consensus pattern (13 bp):
AAAATGAAAACCC
Found at i:26773021 original size:27 final size:26
Alignment explanation
Indices: 26772969--26773021 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
26772959 ATATATAATT
* * *
26772969 ATTATAAAATAATTATTTTTACTTAA
1 ATTATAAAATAATTAATTTCAATTAA
*
26772995 ATTATTAACATAATTAATTTCAATTAA
1 ATTA-TAAAATAATTAATTTCAATTAA
26773022 TTTTATACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (26 bp):
ATTATAAAATAATTAATTTCAATTAA
Found at i:26776137 original size:47 final size:47
Alignment explanation
Indices: 26776065--26776193 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 47
26776055 TCATTTGTGC
* * *
26776065 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAT-T-ATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCA-ATGTGACGAGA
* *
26776111 GCTAGTGTAAGACCATGTTTGGGACATGACATCAG-CATTGTGACGAGA
1 GCTAGTGTAAGA-CATGTTTGGGACATG-CATCGGCCAATGTGACGAGA
*
26776159 GCTAGTGTAAGACAAGTTTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC
26776194 TCGAGATGTA
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
46 18 0.25
47 32 0.45
48 21 0.30
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAATGTGACGAGA
Found at i:26776279 original size:45 final size:44
Alignment explanation
Indices: 26776162--26776279 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 44
26776152 GACGAGAGCT
*
26776162 AGTGTAAGACAAGTTTGGGACAT-GCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACAAGTTTGGGACATGGCATCGG-CTACGAGATG--A-TC
* *
26776208 AATGTAAGACAAG-TTGGGACA-CGCATCGGCTACGAGATGATC
1 AGTGTAAGACAAGTTTGGGACATGGCATCGGCTACGAGATGATC
* *
26776250 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CAAGTTTGGGACATGGCATC
26776280 AACACAGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
42 9 0.15
43 4 0.07
44 9 0.15
45 27 0.44
46 12 0.20
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (44 bp):
AGTGTAAGACAAGTTTGGGACATGGCATCGGCTACGAGATGATC
Found at i:26781217 original size:48 final size:48
Alignment explanation
Indices: 26781149--26781473 Score: 506
Period size: 48 Copynumber: 6.8 Consensus size: 48
26781139 TACAAGATAA
* * * * *
26781149 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
26781197 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
26781245 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
26781293 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
26781341 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
26781389 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
26781437 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
26781474 TGTTGTAACA
Statistics
Matches: 255, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 255 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:26781332 original size:144 final size:144
Alignment explanation
Indices: 26781149--26781473 Score: 578
Period size: 144 Copynumber: 2.3 Consensus size: 144
26781139 TACAAGATAA
* * * * * *
26781149 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
26781214 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
26781279 GAAATATGTATGAG
131 GAAATATGTATGAG
*
26781293 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
26781358 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
26781423 GAAATATGTATGAG
131 GAAATATGTATGAG
26781437 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
26781474 TGTTGTAACA
Statistics
Matches: 172, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 172 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
GAAATATGTATGAG
Found at i:26784581 original size:46 final size:47
Alignment explanation
Indices: 26784434--26784581 Score: 123
Period size: 46 Copynumber: 3.2 Consensus size: 47
26784424 GTAACCCGCC
26784434 CCTAAGTGAACTC-GGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT
1 CCTAAGTGAACTCAGG-CTCAACTCAACGAGTTCGGATG-CTA--TACCAT
* * ** * *
26784483 -CTCA-CGAACTCAGATTCAACTCAACGAGTTC-GA-AC-ATTCGCAT
1 CCTAAGTGAACTCAGGCTCAACTCAACGAGTTCGGATGCTATAC-CAT
*
26784526 CCGTAAGTGAACTCAGGCTCAACTCAACGAGTTCGGATGCTAAACCAT
1 CC-TAAGTGAACTCAGGCTCAACTCAACGAGTTCGGATGCTATACCAT
26784574 CCT-AGTGA
1 CCTAAGTGA
26784582 CATGTCACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
44 2 0.03
45 2 0.03
46 31 0.40
47 25 0.32
48 10 0.13
49 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
CCTAAGTGAACTCAGGCTCAACTCAACGAGTTCGGATGCTATACCAT
Found at i:26799951 original size:32 final size:32
Alignment explanation
Indices: 26799915--26799979 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
26799905 GATAGTAGGA
26799915 TAGTGTAATGAAGTCTCTGATGATCCCCAAAT
1 TAGTGTAATGAAGTCTCTGATGATCCCCAAAT
*
26799947 TAGTGTGATGAAGTCTCTGATGATCCCCAAAT
1 TAGTGTAATGAAGTCTCTGATGATCCCCAAAT
26799979 T
1 T
26799980 CGAGCTAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (32 bp):
TAGTGTAATGAAGTCTCTGATGATCCCCAAAT
Found at i:26810911 original size:35 final size:35
Alignment explanation
Indices: 26810872--26810942 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
26810862 CATCTCCGGA
*
26810872 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
26810907 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
26810942 G
1 G
26810943 TGATCCTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:26814278 original size:35 final size:35
Alignment explanation
Indices: 26814232--26814302 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
26814222 TATCTCCAGA
*
26814232 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
26814267 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
26814302 G
1 G
26814303 TGATCTTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:26814517 original size:46 final size:46
Alignment explanation
Indices: 26814451--26814543 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
26814441 AAGGCCTCTC
26814451 CCCCTTATTGTATTCATTCAGTTGTTAATAGAATTTTGAGAGCATT
1 CCCCTTATTGTATTCATTCAGTTGTTAATAGAATTTTGAGAGCATT
26814497 CCCCTTATTGTATTCATTCAGTTGTTAATAGAATTTTGAGAGCATT
1 CCCCTTATTGTATTCATTCAGTTGTTAATAGAATTTTGAGAGCATT
26814543 C
1 C
26814544 ACTCAAACTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (46 bp):
CCCCTTATTGTATTCATTCAGTTGTTAATAGAATTTTGAGAGCATT
Found at i:26821520 original size:28 final size:29
Alignment explanation
Indices: 26821456--26821526 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
26821446 ATGAAATTGG
* * *
26821456 CACTAAGTGTGCGGGTTCAAATTGTATAG
1 CACTAAGTGTGCGAGTTCAAATTATATAA
*
26821485 CACTAAGTGTGCGAGTTC-GATTATATAA
1 CACTAAGTGTGCGAGTTCAAATTATATAA
26821513 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
26821527 ACTTACTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
28 21 0.55
29 17 0.45
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTCAAATTATATAA
Found at i:26825144 original size:20 final size:19
Alignment explanation
Indices: 26825121--26825167 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
26825111 TATTTCTTAA
26825121 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
26825141 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
26825161 AATTAAA
1 AATTAAA
26825168 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:26826349 original size:25 final size:25
Alignment explanation
Indices: 26826296--26826350 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26826286 CGGTTAAAGA
*
26826296 ATTCGCACACACAGTGCCTCAATTT
1 ATTCGCACACACAGTGCCTCAATTC
* *
26826321 ATTCGCACACATAGTTCCT-ATATTC
1 ATTCGCACACACAGTGCCTCA-ATTC
26826346 ATTCG
1 ATTCG
26826351 TTATTACACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTCAATTC
Found at i:26826530 original size:43 final size:43
Alignment explanation
Indices: 26826469--26826610 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
26826459 CTTTGCTCGA
** * *
26826469 ATCACCGGCATTAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
*
26826512 ATCACCGGCACGAAGCCTGCTAGGAATGAAGG-CCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
* * * * **
26826554 ATCACCAGCACAAAGCCTGCTAAGCATGAAGGCCTGGTTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
26826597 ATCACCGGCACGAA
1 ATCACCGGCACGAA
26826611 TGCCCTTCAG
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 37 0.44
43 47 0.56
ACGTcount: A:0.33, C:0.31, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
Found at i:26826664 original size:40 final size:40
Alignment explanation
Indices: 26826599--26826759 Score: 259
Period size: 40 Copynumber: 4.0 Consensus size: 40
26826589 GGTTACACAT
* * * * *
26826599 CACCGGCACGAATGCCCTTCAGGACTTAGCCTAGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
26826639 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
*
26826679 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
*
26826719 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
26826759 C
1 C
26826760 TCTCAATTCT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
Found at i:26830615 original size:20 final size:20
Alignment explanation
Indices: 26830573--26830619 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
26830563 TATTTCTTAA
26830573 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTCTACC
*
26830593 AATTCAAAACTCAATTC-AGC
1 AATT-AAAACTCAATTCTACC
26830613 AATTAAA
1 AATTAAA
26830620 CATGAATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.40
21 12 0.48
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (20 bp):
AATTAAAACTCAATTCTACC
Found at i:26834700 original size:40 final size:41
Alignment explanation
Indices: 26834645--26834728 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 41
26834635 GAAATAAATG
26834645 CAATTTGATAATAAATATACCA-TCAACAAATTGAATATAT
1 CAATTTGATAATAAATATACCATTCAACAAATTGAATATAT
* ** *
26834685 CAATTTGATTATAAATATACCATTCAATGAATTGAATATGT
1 CAATTTGATAATAAATATACCATTCAACAAATTGAATATAT
26834726 CAA
1 CAA
26834729 CATGTAACTC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 21 0.54
41 18 0.46
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (41 bp):
CAATTTGATAATAAATATACCATTCAACAAATTGAATATAT
Found at i:26835665 original size:21 final size:23
Alignment explanation
Indices: 26835622--26835671 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
26835612 ACACATTTTG
26835622 AAATCATT-TCATAATCAAAAGTC
1 AAAT-ATTATCATAATCAAAAGTC
*
26835645 ATATATTATCAT-ATC-AAAGTC
1 AAATATTATCATAATCAAAAGTC
26835666 AAATAT
1 AAATAT
26835672 CAACATCAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 11 0.46
22 6 0.25
23 7 0.29
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (23 bp):
AAATATTATCATAATCAAAAGTC
Found at i:26837083 original size:43 final size:44
Alignment explanation
Indices: 26836972--26837083 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
26836962 AATGCCAATA
* * * * *
26836972 TCCCAGACGTGGTCTTACATGT-AACCAAATATCGATGCTACTG
1 TCCCAAACATGGTCTTACACGTAAATCAAATATCGATGCGACTG
* *
26837015 TCCCATACAGGGTCTTACACG-AAATCAAATAT-GATGGCGA-TG
1 TCCCAAACATGGTCTTACACGTAAATCAAATATCGAT-GCGACTG
*
26837057 TGCCAAACATGGTCTTACACGTAAATC
1 TCCCAAACATGGTCTTACACGTAAATC
26837084 TCAAATCGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 23 0.40
43 34 0.60
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
TCCCAAACATGGTCTTACACGTAAATCAAATATCGATGCGACTG
Found at i:26843220 original size:21 final size:21
Alignment explanation
Indices: 26843186--26843225 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26843176 TTCACAATCA
* *
26843186 AAAGTCATACATTATCATATC
1 AAAGTCAAACATTAACATATC
*
26843207 AAAGTCAAATATTAACATA
1 AAAGTCAAACATTAACATA
26843226 AGGTCTCTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAGTCAAACATTAACATATC
Found at i:26844681 original size:42 final size:42
Alignment explanation
Indices: 26844576--26844745 Score: 189
Period size: 43 Copynumber: 4.0 Consensus size: 42
26844566 CGAAAAGCTC
* * * * * * *
26844576 ATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAACCAA
1 ATACGATGCCAATATCCCAGACATGGTCTTACACGAAATCAA
* * *
26844618 ATATCGATGCCACTATCCCAGACAGGGTCTTAAACGAAATCAA
1 ATA-CGATGCCAATATCCCAGACATGGTCTTACACGAAATCAA
26844661 ATACGATGCCAATATCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAATATCCCAGACATGGTCTTACACG-AAA--TCAA
* *
26844706 AT-CGATGCCAACATCCCAGACATGGTCTTACACAAAATCA
1 ATACGATGCCAATATCCCAGACATGGTCTTACACGAAATCA
26844746 CATATTGGAA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.03
42 32 0.29
43 38 0.35
44 30 0.28
45 6 0.06
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATATCCCAGACATGGTCTTACACGAAATCAA
Found at i:26844724 original size:86 final size:85
Alignment explanation
Indices: 26844576--26844745 Score: 211
Period size: 86 Copynumber: 2.0 Consensus size: 85
26844566 CGAAAAGCTC
* * * *
26844576 ATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAACCAAATATCGATGCCACTATCCCAGAC
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAACCAAATATCGATGCCACTATCCCAGAC
*
26844641 AGGGTCTTAAACGAAATCAA
66 AGGGTCTTAAACAAAATCAA
*
26844661 ATACGATGCCAATATCCCAGACATGGTCTTACACGTAAATCTC-AA-ATCGATGCCAAC-ATCCC
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGT-AA-C-CAAATATCGATGCC-ACTATCCC
* *
26844723 AGACATGGTCTTACACAAAATCA
62 AGACAGGGTCTTAAACAAAATCA
26844746 CATATTGGAA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
85 31 0.42
86 36 0.49
87 5 0.07
88 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACACGTAACCAAATATCGATGCCACTATCCCAGAC
AGGGTCTTAAACAAAATCAA
Found at i:26844725 original size:44 final size:41
Alignment explanation
Indices: 26844593--26844745 Score: 164
Period size: 44 Copynumber: 3.6 Consensus size: 41
26844583 GCCAATGTCT
* * * *
26844593 CAGACGTGGTCTTACATGTAACCAAATATCGATGCC-ACTATCC
1 CAGACATGGTCTTACACGAAATC-AA-ATCGATGCCAAC-ATCC
* * *
26844636 CAGACAGGGTCTTAAACGAAATCAAATACGATGCCAATATCC
1 CAGACATGGTCTTACACGAAATCAAAT-CGATGCCAACATCC
26844678 CAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAACATCC
1 CAGACATGGTCTTACACG-AAA--TCAAATCGATGCCAACATCC
*
26844722 CAGACATGGTCTTACACAAAATCA
1 CAGACATGGTCTTACACGAAATCA
26844746 CATATTGGAA
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
41 5 0.05
42 29 0.31
43 24 0.26
44 30 0.32
45 6 0.06
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (41 bp):
CAGACATGGTCTTACACGAAATCAAATCGATGCCAACATCC
Found at i:26853611 original size:25 final size:25
Alignment explanation
Indices: 26853583--26853632 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26853573 TTTTTTCTCC
*
26853583 TAAATTTT-AATTTTATTTAATTATT
1 TAAATTTTCAA-TTTATTAAATTATT
26853608 TAAATTTTCAATTTATTAAATTATT
1 TAAATTTTCAATTTATTAAATTATT
26853633 AATAGTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
TAAATTTTCAATTTATTAAATTATT
Found at i:26856501 original size:21 final size:21
Alignment explanation
Indices: 26856472--26856512 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26856462 ATTATTAACA
26856472 TAATGAATTTTAATTATTTTG
1 TAATGAATTTTAATTATTTTG
* *
26856493 TAATTAATTTTGATTATTTT
1 TAATGAATTTTAATTATTTT
26856513 CGACAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (21 bp):
TAATGAATTTTAATTATTTTG
Found at i:26856674 original size:21 final size:22
Alignment explanation
Indices: 26856636--26856676 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26856626 AAATTATGTG
*
26856636 TATTAATTTGTAATATAATTAA
1 TATTAATTTATAATATAATTAA
26856658 TATTAATTTAT-ATATAATT
1 TATTAATTTATAATATAATT
26856677 TAGTTTGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAATTTATAATATAATTAA
Found at i:26864983 original size:40 final size:40
Alignment explanation
Indices: 26864932--26865212 Score: 474
Period size: 40 Copynumber: 7.0 Consensus size: 40
26864922 TGGATGATAA
* *
26864932 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
*
26864972 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
26865012 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
26865052 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
*
26865092 CCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
26865132 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * * *
26865172 CCAGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTA-CTATAT
26865212 C
1 C
26865213 TGGTTAAATC
Statistics
Matches: 232, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 230 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:26873473 original size:48 final size:48
Alignment explanation
Indices: 26873321--26873545 Score: 178
Period size: 48 Copynumber: 4.8 Consensus size: 48
26873311 GGGTTATGTA
* * *
26873321 CAATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGATATG
1 CAATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATG
* **** * ** *
26873369 TAATATTGTGTAAGACCATAG-CT-GGGC-T---ACCGGCATCAATATG
1 CAATCCCATGTAAGACCAT-GTCTAGGACATGGCATTGGCATCGATATG
** * *
26873412 TGATCGCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACT-TG
1 CAATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA-TATG
26873460 CAATCCCATGTAAGACCGA-GTCTAGGACATGGCATTGGCATCGATATG
1 CAATCCCATGTAAGACC-ATGTCTAGGACATGGCATTGGCATCGATATG
** * * *
26873508 TGATCCCATGTAAGACCATATCTCGGATATGGCATTGG
1 CAATCCCATGTAAGACCATGTCTAGGACATGGCATTGG
26873546 TATCTTACCA
Statistics
Matches: 137, Mismatches: 29, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 26 0.19
44 3 0.02
45 1 0.01
46 1 0.01
47 5 0.04
48 97 0.71
49 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (48 bp):
CAATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATG
Found at i:26876803 original size:28 final size:27
Alignment explanation
Indices: 26876752--26876857 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
26876742 CTGCCAGAAT
* *
26876752 AGATAATGT-GATAGAGTCACCAGATAC
1 AGATAATGTGGCT-GAGCCACCAGATAC
26876779 AGATAATCGTGGCTGAGCCACCAGA-AC
1 AGATAAT-GTGGCTGAGCCACCAGATAC
*
26876806 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCTGAGCCACCAGATAC
26876833 AGATAATTTGTGGCAT-AGCCACCAG
1 AGATAA--TGTGGC-TGAGCCACCAG
26876858 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.01
27 36 0.53
28 29 0.43
29 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
AGATAATGTGGCTGAGCCACCAGATAC
Found at i:26876829 original size:55 final size:54
Alignment explanation
Indices: 26876745--26876857 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
26876735 AGCATGGCTG
* * *
26876745 CCAGAATAGATAATGTGATAGAGTCACCAGATACAGATAA-TCGTGGC-TGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAT-AGCCA
* *
26876799 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCATAGCCA
26876854 CCAG
1 CCAG
26876858 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 18 0.35
55 32 0.63
56 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCATAGCCA
Found at i:26883456 original size:26 final size:26
Alignment explanation
Indices: 26883427--26883479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26883417 TCTGGGACGT
*
26883427 TGGCATTGTACTAGCTTTCTGAGCTA
1 TGGCATTGTACTAGCTTTCCGAGCTA
26883453 TGGCATTGTACTAGCTTTCCGAGCTA
1 TGGCATTGTACTAGCTTTCCGAGCTA
26883479 T
1 T
26883480 CTGCGTATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
TGGCATTGTACTAGCTTTCCGAGCTA
Found at i:26890822 original size:44 final size:42
Alignment explanation
Indices: 26890768--26890870 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 42
26890758 TTACGATATG
* *
26890768 TGATTTCGTGTAAGACCACA-TGTACGACATTGGCATCG-ATT
1 TGATTTCGTGTAAGACCA-AGTCTACGACATCGGCATCGTATT
**
26890809 TGAGATTTACGTGTAAGACCAAGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCAAGTCTACGACATCGGCATCGTATT
26890854 TGATTTCGTGTAAGACC
1 TGATTTCGTGTAAGACC
26890871 CTGTTTAGGA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
41 1 0.02
42 11 0.21
43 11 0.21
44 26 0.49
45 4 0.08
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCAAGTCTACGACATCGGCATCGTATT
Found at i:26893036 original size:32 final size:32
Alignment explanation
Indices: 26893000--26893070 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
26892990 ATGCGGCTCT
* *
26893000 AAGCCTTTAGTAGCAGTATTATAATTGGCACA
1 AAGCCATTAGTAACAGTATTATAATTGGCACA
* * **
26893032 AAGCCATTGGTAACTGTATTATGTTTGGCACA
1 AAGCCATTAGTAACAGTATTATAATTGGCACA
*
26893064 TAGCCAT
1 AAGCCAT
26893071 CAGCGACGGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (32 bp):
AAGCCATTAGTAACAGTATTATAATTGGCACA
Found at i:26893650 original size:27 final size:27
Alignment explanation
Indices: 26893620--26893717 Score: 142
Period size: 27 Copynumber: 3.6 Consensus size: 27
26893610 TTTACCTAAC
* *
26893620 AAGGGTATTTCGGTAATCCTACTCTAT
1 AAGGGTATTTCGATAATCCTACCCTAT
* *
26893647 AAGGGTATTTCGACAATCCTACCCTAC
1 AAGGGTATTTCGATAATCCTACCCTAT
* *
26893674 AGGGGTATTTCGGTAATCCTACCCTAT
1 AAGGGTATTTCGATAATCCTACCCTAT
26893701 AAGGGTATTTCGATAAT
1 AAGGGTATTTCGATAAT
26893718 TTTATAAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
AAGGGTATTTCGATAATCCTACCCTAT
Found at i:26893734 original size:27 final size:26
Alignment explanation
Indices: 26893702--26893994 Score: 216
Period size: 27 Copynumber: 11.0 Consensus size: 26
26893692 CTACCCTATA
*
26893702 AGGGTATTTCGATAATTTTATAAATT
1 AGGGTATTTCGATAATTTTACAAATT
*
26893728 AGTGGTATTTC-ACTAATTTTACAAGTT
1 AG-GGTATTTCGA-TAATTTTACAAATT
* * * *
26893755 AGGGTTATTTTGGTAGTTTTACAAATCG
1 AGGG-TATTTCGATAATTTTACAAAT-T
** * *
26893783 AGGGTATTTTAATAATTTTACAAGTCG
1 AGGGTATTTCGATAATTTTACAAAT-T
* * *
26893810 GGGGTATTTCGATAATTTCACAAATCA
1 AGGGTATTTCGATAATTTTACAAAT-T
* * * *
26893837 AGGGTATTTTGGTAATTTTACAACCTG
1 AGGGTATTTCGATAATTTTACAA-ATT
* *
26893864 GGGGTATTTC-AGTAATTTAACAAATT
1 AGGGTATTTCGA-TAATTTTACAAATT
*
26893890 AAGGGTATTTCGGTAATTTTACAAATT
1 -AGGGTATTTCGATAATTTTACAAATT
* * *
26893917 AAGGGTATTTCGGTAATTTTATAAATCA
1 -AGGGTATTTCGATAATTTTACAAAT-T
*
26893945 AGGGTATTTCGATAATTTTAC-AACT
1 AGGGTATTTCGATAATTTTACAAATT
* *
26893970 CGGATATTTC-ATTAATTTTACAAAT
1 AGGGTATTTCGA-TAATTTTACAAAT
26893995 CGGGGGTTTT
Statistics
Matches: 214, Mismatches: 41, Indels: 24
0.77 0.15 0.09
Matches are distributed among these distances:
24 1 0.00
25 17 0.08
26 10 0.05
27 181 0.85
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATT
Found at i:26893764 original size:54 final size:53
Alignment explanation
Indices: 26893702--26893995 Score: 247
Period size: 54 Copynumber: 5.5 Consensus size: 53
26893692 CTACCCTATA
* * *
26893702 AGGGTATTTCGATAATTTTATAAAT-TAGTGGTATTTCACTAATTTTACAAGTT
1 AGGGTATTTCGATAATTTTACAAATCAAG-GGTATTTCAGTAATTTTACAAGTT
* * * * * * *
26893755 AGGGTTATTTTGGTAGTTTTACAAATCGAGGGTATTTTAATAATTTTACAAGTCG
1 AGGG-TATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGT-T
* * ** * *
26893810 GGGGTATTTCGATAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAACCTG
1 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAA-GTT
* * * * *
26893864 GGGGTATTTC-AGTAATTTAACAAATTAAGGGTATTTCGGTAATTTTACAAATT
1 AGGGTATTTCGA-TAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGTT
* * *
26893917 AAGGGTATTTCGGTAATTTTATAAATCAAGGGTATTTC-GATAATTTTACAA-CT
1 -AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAG-TAATTTTACAAGTT
* *
26893970 CGGATATTTC-ATTAATTTTACAAATC
1 AGGGTATTTCGA-TAATTTTACAAATC
26893996 GGGGGTTTTA
Statistics
Matches: 200, Mismatches: 32, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
52 21 0.10
53 8 0.04
54 165 0.82
55 6 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGTT
Found at i:26893787 original size:81 final size:78
Alignment explanation
Indices: 26893702--26893994 Score: 277
Period size: 81 Copynumber: 3.6 Consensus size: 78
26893692 CTACCCTATA
* *
26893702 AGGGTATTTCGATAATTTTATAAATTAGTGGTATTTCACTAATTTTACAAGTTAGGGTTATTTTG
1 AGGGTATTTCGATAATTTTACAAATTAG-GGTATTTCA-TAATTTTACAAATTAGGG-TATTTTG
*
26893767 GTAGTTTTACAAATCG
63 GTAATTTTACAAATCG
** * ** * *
26893783 AGGGTATTTTAATAATTTTACAAGTCGGGGGTATTTCGATAATTTCACAAATCAAGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAAT-TAGGGTATTTC-ATAATTTTACAAAT-TAGGGTATTTTG
*
26893848 GTAATTTTAC-AACCTG
63 GTAATTTTACAAATC-G
* * * *
26893864 GGGGTATTTC-AGTAATTTAACAAATTAAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTC
1 AGGGTATTTCGA-TAATTTTACAAATT-AGGGTATTTC-ATAATTTTACAAATT-AGGGTATTTT
* *
26893928 GGTAATTTTATAAATCA
62 GGTAATTTTACAAATCG
* * *
26893945 AGGGTATTTCGATAATTTTAC-AACTCGGATATTTCATTAATTTTACAAAT
1 AGGGTATTTCGATAATTTTACAAATTAGGGTATTTCA-TAATTTTACAAAT
26893995 CGGGGGTTTT
Statistics
Matches: 172, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
79 21 0.12
80 7 0.04
81 134 0.78
82 10 0.06
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (78 bp):
AGGGTATTTCGATAATTTTACAAATTAGGGTATTTCATAATTTTACAAATTAGGGTATTTTGGTA
ATTTTACAAATCG
Found at i:26903794 original size:44 final size:44
Alignment explanation
Indices: 26903731--26903817 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
26903721 TTACTCAATA
* *
26903731 AGTTGGCTGAATTGTACATTTCAGAAATTGTGATATTGGAAAAG
1 AGTTGGCTGAATTGTACATTTCAGAAATTGTGAGATTAGAAAAG
26903775 AGTTGGCTGAATTGTACATTTCAGAAATTGTGAGATTAGAAAA
1 AGTTGGCTGAATTGTACATTTCAGAAATTGTGAGATTAGAAAA
26903818 AAGAAAAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (44 bp):
AGTTGGCTGAATTGTACATTTCAGAAATTGTGAGATTAGAAAAG
Found at i:26906775 original size:68 final size:66
Alignment explanation
Indices: 26906703--26906874 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
26906693 CATCATGTGT
* * * *
26906703 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
26906766 TGTAG
62 TGTAG
** * *
26906771 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
26906836 AG
65 AG
* * * *
26906838 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
26906875 GGTGGCACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:26906808 original size:64 final size:64
Alignment explanation
Indices: 26906727--26906910 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
26906717 AGACATTATG
* * *
26906727 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
26906791 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26906856 AA
63 AA
* * * *
26906858 AT-TGGCTAGGTCACATGGGTGGCACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
26906911 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 20 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26912520 original size:45 final size:45
Alignment explanation
Indices: 26912470--26912556 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
26912460 CCAAAACATG
*
26912470 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCGAA
1 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCGAA
26912515 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTC
1 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTC
26912557 AGATAACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCGAA
Found at i:26923220 original size:254 final size:253
Alignment explanation
Indices: 26922751--26923254 Score: 645
Period size: 254 Copynumber: 2.0 Consensus size: 253
26922741 GCCAAACCTA
* * * *
26922751 TCAAATTAACACGGCGTGCGACACGCCCGTGTCTAGCACTCGTGGTCAAACCTGTTAAATTACCA
1 TCAAACTAACACGGCGTGCAACACGCCCGTGTCTAGCACTCGTGGCCAAACCTATTAAATTACCA
* * ** * *
26922816 CGAGCATGGGCTTACATACACGGTTGGGGGAGAAGCGAACGAAGTCAGGCACGGTCGTGCGACAC
66 AGAGCATGGGCCTACATACACGGGCGGGGGAGAAGCGAACGAAGTCAAGCACGATCGTGCGACAC
* *
26922881 GGCCGTGTGCGCCCACACGACCAAGGGACACGGGCATGGAACAATTGTCAAATGCGCCTAAATTC
131 GGCCGTGTGCACCCACACGACCAAGGGACACAGGCATGGAACAATTGTCAAATGCGCCTAAATTC
* *
26922946 AAAATTTGCGAATCACACGGGCTAAAATTAGGGAACACGAGCGTATTCTCTGGCCGTG
196 AAAATTCGCGAATCACACGGGCTAAAATTAGGGAACACGAGCATATTCTCTGGCCGTG
*
26923004 TCAAACTAACACGGGTGTGCAACACGCCCGTGTCTAGCAC-CTGTGGCCAAACCTATTAAATTAC
1 TCAAACTAACAC-GGCGTGCAACACGCCCGTGTCTAGCACTC-GTGGCCAAACCTATTAAATTAC
* * *
26923068 CATAG-GCGTGGGCCTACATACATGGGCGGGGGAGAAGCGAACGAAGTCAAGCACGATCGTGTGA
64 CA-AGAGCATGGGCCTACATACACGGGCGGGGGAGAAGCGAACGAAGTCAAGCACGATCGTGCGA
* * * * * ** * * *
26923132 TATGGTCGTGTGCATCCACACGCCCAAGGGACACAGGTGTGGAATAGTTGTCAGATGCG-CTCAA
128 CACGGCCGTGTGCACCCACACGACCAAGGGACACAGGCATGGAACAATTGTCAAATGCGCCT-AA
* * * * * *
26923196 ATTCAAAATTCGTGAATCACACGGGCTGATATTGGGGAACACGGGCATGTTCTCTGGCC
192 ATTCAAAATTCGCGAATCACACGGGCTAAAATTAGGGAACACGAGCATATTCTCTGGCC
26923255 ATGTGCCCCA
Statistics
Matches: 213, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
253 14 0.07
254 198 0.93
255 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (253 bp):
TCAAACTAACACGGCGTGCAACACGCCCGTGTCTAGCACTCGTGGCCAAACCTATTAAATTACCA
AGAGCATGGGCCTACATACACGGGCGGGGGAGAAGCGAACGAAGTCAAGCACGATCGTGCGACAC
GGCCGTGTGCACCCACACGACCAAGGGACACAGGCATGGAACAATTGTCAAATGCGCCTAAATTC
AAAATTCGCGAATCACACGGGCTAAAATTAGGGAACACGAGCATATTCTCTGGCCGTG
Found at i:26924648 original size:19 final size:20
Alignment explanation
Indices: 26924616--26924653 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26924606 TGTGTAAAAA
*
26924616 TTTTTATTTATTATTTTATG
1 TTTTTACTTATTATTTTATG
26924636 TTTTTACTT-TTATTTTAT
1 TTTTTACTTATTATTTTAT
26924654 TTTAAGACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTTACTTATTATTTTATG
Found at i:26947465 original size:46 final size:46
Alignment explanation
Indices: 26947415--26947586 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
26947405 TGAGCATCCA
26947415 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
26947461 AACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCCG
* *
26947508 AGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
26947554 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26947587 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 4, Indels: 22
0.81 0.03 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 62 0.56
47 29 0.26
48 1 0.01
50 6 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:26947567 original size:93 final size:93
Alignment explanation
Indices: 26947408--26947579 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
26947398 GGATGGTTGA
*
26947408 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
26947473 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TGAGTCCGAGTTCAAGAGATGTAACTAG
* * *
26947501 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
26947566 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
26947580 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCAAGAGATGTAACTAG
Found at i:26950132 original size:42 final size:42
Alignment explanation
Indices: 26950015--26950173 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 42
26950005 CATAGGATTA
* *
26950015 CGATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGAC-ATGGCAT
*
26950058 CGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCAT
1 CGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACAT-GGCAT
* *
26950102 C-ATATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACA-TGGCAT
* * * *
26950144 CGATATTTGATTACATGTAACACCACGTCT
1 CGATATTTGATTTCGTGTAAGACCATGTCT
26950174 AGGATGATGG
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 30 0.31
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
Found at i:26953266 original size:33 final size:33
Alignment explanation
Indices: 26953217--26953283 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
26953207 CCGTGTAGTT
* *
26953217 ACGTCCTGACTGTCAGCTTGTGTGAGCAGGCCC
1 ACGTCCTAACTATCAGCTTGTGTGAGCAGGCCC
26953250 ACGTCCTAACTATCAGCTTGTGTGAGCAGGCCC
1 ACGTCCTAACTATCAGCTTGTGTGAGCAGGCCC
26953283 A
1 A
26953284 TGATTAGCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.24
Consensus pattern (33 bp):
ACGTCCTAACTATCAGCTTGTGTGAGCAGGCCC
Found at i:26956238 original size:17 final size:17
Alignment explanation
Indices: 26956216--26956248 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26956206 ATGAATGAAA
26956216 AAATACTAG-GGCAATTG
1 AAATACT-GTGGCAATTG
26956233 AAATACTGTGGCAATT
1 AAATACTGTGGCAATT
26956249 ATCAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.27
Consensus pattern (17 bp):
AAATACTGTGGCAATTG
Found at i:26971885 original size:22 final size:21
Alignment explanation
Indices: 26971843--26971885 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
26971833 ATGCGTATTG
* *
26971843 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATCCATT
*
26971864 AGTTAGTAAAATGTATTCCATT
1 AGTTA-TAAAATGTAATCCATT
26971886 TATGTGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (21 bp):
AGTTATAAAATGTAATCCATT
Found at i:26972677 original size:39 final size:41
Alignment explanation
Indices: 26972576--26972759 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
26972566 TCGAATGATG
* * * *
26972576 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
26972616 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
26972656 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
26972695 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
26972734 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26972760 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 16
0.82 0.08 0.11
Matches are distributed among these distances:
38 9 0.07
39 51 0.41
40 54 0.44
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:26978196 original size:43 final size:43
Alignment explanation
Indices: 26978135--26978337 Score: 244
Period size: 43 Copynumber: 4.5 Consensus size: 43
26978125 GCTAGTAATA
* * *
26978135 TATTCGGGCCTTCGTGCCTAGCATGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
26978178 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* * *
26978221 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* *
26978264 TATTCAGGCCTTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGATGATGCG
1 ---T-A----TTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* *
26978315 TATTCGGGCCTTTGAGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
26978338 TGCTATAATG
Statistics
Matches: 140, Mismatches: 12, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
43 100 0.71
46 1 0.01
47 2 0.01
48 1 0.01
51 36 0.26
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:26978302 original size:51 final size:51
Alignment explanation
Indices: 26978226--26978326 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
26978216 ATGTGTATTT
* *
26978226 GGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTGTATTCAGGCCTTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGCGTATTCAGGCCTTC
* * *
26978277 GGGCCTTTGTGCCTAGCAGGCTTCGTGCCGATGATGCGTATTCGGGCCTT
1 GGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGCGTATTCAGGCCTT
26978327 TGAGCCTAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.11, C:0.27, G:0.33, T:0.30
Consensus pattern (51 bp):
GGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGCGTATTCAGGCCTTC
Found at i:26980835 original size:22 final size:22
Alignment explanation
Indices: 26980807--26980854 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
26980797 GGCTTTTAGT
26980807 CGTCCTGTCTAGGGCATTAAGC
1 CGTCCTGTCTAGGGCATTAAGC
* * *
26980829 CGTCCTGTCTATGGCGTTGAGC
1 CGTCCTGTCTAGGGCATTAAGC
26980851 CGTC
1 CGTC
26980855 TTGTTGACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.29, G:0.29, T:0.29
Consensus pattern (22 bp):
CGTCCTGTCTAGGGCATTAAGC
Found at i:27020652 original size:68 final size:69
Alignment explanation
Indices: 27020580--27020737 Score: 187
Period size: 68 Copynumber: 2.3 Consensus size: 69
27020570 CATCATGTGT
* ** * *
27020580 ACAAGAGAGCTACGAGATA-CTATGTAGTAGCTAGGTCACATGTGTGAT-AAGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATAGATAAAT-GTAGCTAGGTCACATGTGTGATCAAGGGAAGGA-CACC
27020642 ATGTAG
64 ATGTAG
* * *
27020648 ACAAGAGAGCTACGAGAGAGATAAATGTAGCTAGGTCGCATGTGTGATCCCAAGTGAAGGACACC
1 ACAAGAGAGCTACGAGATAGATAAATGTAGCTAGGTCACATGTGTGAT--CAAGGGAAGGACACC
27020713 ATGTAG
64 ATGTAG
27020719 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
27020738 AATTGGCTAG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
68 39 0.51
69 3 0.04
70 1 0.01
71 33 0.43
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGATAGATAAATGTAGCTAGGTCACATGTGTGATCAAGGGAAGGACACCAT
GTAG
Found at i:27033258 original size:20 final size:20
Alignment explanation
Indices: 27033233--27033271 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27033223 GTCCACATGG
27033233 GCCCGCATTACT-GGCCTTAA
1 GCCCGCATTA-TGGGCCTTAA
27033253 GCCCGCATTATGGGCCTTA
1 GCCCGCATTATGGGCCTTA
27033272 GGCCAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.18, C:0.33, G:0.23, T:0.26
Consensus pattern (20 bp):
GCCCGCATTATGGGCCTTAA
Found at i:27037301 original size:50 final size:48
Alignment explanation
Indices: 27037219--27037346 Score: 123
Period size: 48 Copynumber: 2.6 Consensus size: 48
27037209 GAGTTCATTC
* * * * *
27037219 ATTTGGCTTCAGGCCATGATATCGGCACTTTGG-GTACGAATCATACCTTG
1 ATTTGGCTTCGGGCCATGGTATAGGTATTTTGGAG-ACGAAT--TACCTTG
* * * *
27037269 ATTTGGCTTCGGGACATGGTATAGGTATTTTGGAGATGAGTTATCTTG
1 ATTTGGCTTCGGGCCATGGTATAGGTATTTTGGAGACGAATTACCTTG
* *
27037317 ATTTGGCTTTGAGCCATGGTATAGGTATTT
1 ATTTGGCTTCGGGCCATGGTATAGGTATTT
27037347 ATTGTGCAAG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 33 0.51
50 31 0.48
51 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (48 bp):
ATTTGGCTTCGGGCCATGGTATAGGTATTTTGGAGACGAATTACCTTG
Found at i:27047545 original size:42 final size:42
Alignment explanation
Indices: 27047465--27047545 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
27047455 GGTGTAGACT
* **
27047465 TCACACGCCCAAGACACACGCCCGTGCCTGTGGTCGTGTCCC
1 TCACACGCCCAAGACACACGCCCGTGCCTCTGCCCGTGTCCC
* * * *
27047507 TCACACGGCCGAGACGCACGCCCGTGTCTCTGCCCGTGT
1 TCACACGCCCAAGACACACGCCCGTGCCTCTGCCCGTGT
27047546 GCTTAATTCT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.15, C:0.42, G:0.26, T:0.17
Consensus pattern (42 bp):
TCACACGCCCAAGACACACGCCCGTGCCTCTGCCCGTGTCCC
Found at i:27052041 original size:30 final size:30
Alignment explanation
Indices: 27051983--27052041 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
27051973 ATTTTCGGGC
* * **
27051983 CTAGGGGTAAGATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
27052013 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
27052042 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:27052524 original size:46 final size:46
Alignment explanation
Indices: 27052426--27052548 Score: 160
Period size: 46 Copynumber: 2.6 Consensus size: 46
27052416 TGAGAGCCAG
* *
27052426 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACAAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAACAAGTGCTAA
*
27052474 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAAACGTAAGT-C-AA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAAAC--AAGTGCTAA
*
27052520 TGTAAGATATGTCTGGGACATGCATCGGC
1 TGTAAGACATGTCTGGGACATGCATCGGC
27052549 TATGAGATGT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 43 0.63
47 14 0.21
48 11 0.16
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACAAGTGCTAA
Found at i:27053729 original size:22 final size:21
Alignment explanation
Indices: 27053701--27053741 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
27053691 TCAAATTGGT
*
27053701 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCATGTT-CCCCTCC
27053723 CACACGGGCATGTTCCCCT
1 CACACGGGCATGTTCCCCT
27053742 ATATCTACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.12, C:0.44, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACGGGCATGTTCCCCTCC
Found at i:27063240 original size:40 final size:40
Alignment explanation
Indices: 27063185--27063405 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
27063175 TATTCGAATG
27063185 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27063225 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
27063265 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27063304 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27063344 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
27063384 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
27063406 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 52 0.31
40 114 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27063317 original size:79 final size:80
Alignment explanation
Indices: 27063185--27063405 Score: 367
Period size: 79 Copynumber: 2.8 Consensus size: 80
27063175 TATTCGAATG
*
27063185 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
27063250 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
*
27063265 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
27063329 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * *
27063344 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
27063406 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
79 91 0.68
80 41 0.31
81 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:27071793 original size:40 final size:40
Alignment explanation
Indices: 27071738--27072077 Score: 513
Period size: 40 Copynumber: 8.5 Consensus size: 40
27071728 TTCGAATGAC
27071738 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
27071778 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
27071818 ATCCGGGCTAAGTCCCAAAGGCATTTGTGTTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
27071858 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
** *
27071898 ATTTGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
27071938 ATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* * *
27071978 ATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* * *
27072018 ATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
27072058 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
27072078 TACTTGGGTT
Statistics
Matches: 271, Mismatches: 28, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.05
40 256 0.94
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:27080069 original size:40 final size:40
Alignment explanation
Indices: 27080008--27080347 Score: 522
Period size: 40 Copynumber: 8.5 Consensus size: 40
27079998 TTCGAATGAC
* *
27080008 ATCCGGGCTAAGTCTCAAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
27080048 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
27080088 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* * *
27080128 ATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
27080168 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
27080208 ATCCGGGCTAAGTCCCGAATGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
27080248 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* ** *
27080288 ATCCGGGCTAAGACCTAAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
27080328 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
27080348 TACTTGGGTT
Statistics
Matches: 275, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.04
40 261 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:27083153 original size:18 final size:19
Alignment explanation
Indices: 27083116--27083153 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
27083106 CCTAGCCACG
27083116 ACCTCTCAGTAGCTGCTGAAC
1 ACCTCTCAGTA-C-GCTGAAC
27083137 ACCTCTCAGTA-GCTGAA
1 ACCTCTCAGTACGCTGAA
27083154 TAGTGCCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
21 11 0.65
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (19 bp):
ACCTCTCAGTACGCTGAAC
Found at i:27084313 original size:15 final size:15
Alignment explanation
Indices: 27084293--27084323 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27084283 ACAGTATCAG
27084293 TAATAAACAAAGTAT
1 TAATAAACAAAGTAT
*
27084308 TAATAAACAGAGTAT
1 TAATAAACAAAGTAT
27084323 T
1 T
27084324 TCAGTACAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (15 bp):
TAATAAACAAAGTAT
Found at i:27085553 original size:27 final size:26
Alignment explanation
Indices: 27085515--27085590 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 26
27085505 GTCATACATA
*
27085515 TCATAGGGTATATTAGTCATTTTACC
1 TCATAGGGTATAATAGTCATTTTACC
27085541 TCATAGGGTTATAATAGTCATTTTACC
1 TCATAGGG-TATAATAGTCATTTTACC
27085568 TCATAGGGGTATAATAGTCATTT
1 TCATA-GGGTATAATAGTCATTT
27085591 AAAAAAATTG
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 8 0.17
27 36 0.77
28 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (26 bp):
TCATAGGGTATAATAGTCATTTTACC
Found at i:27090424 original size:48 final size:48
Alignment explanation
Indices: 27090351--27090812 Score: 677
Period size: 48 Copynumber: 9.8 Consensus size: 48
27090341 AGATAAATAT
* * * * *
27090351 ATATATATGTGTGGTGAAGCTGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
* *
27090399 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
* * * * *
27090447 ATATGTACATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
* *
27090495 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
*
27090543 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
27090591 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATA--TG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
* * *
27090635 ---TGTATACGTGGTAAAGCCGACTGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
* * *
27090680 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
*
27090728 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
27090776 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
27090813 TGTTGTAACA
Statistics
Matches: 375, Mismatches: 32, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
41 30 0.08
42 2 0.01
43 4 0.01
44 1 0.00
45 2 0.01
46 5 0.01
47 2 0.01
48 329 0.88
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTG
Found at i:27090752 original size:233 final size:236
Alignment explanation
Indices: 27090351--27090812 Score: 768
Period size: 233 Copynumber: 2.0 Consensus size: 236
27090341 AGATAAATAT
* * * *
27090351 ATATATATGTGTGGTGAAGCTGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA-GTGTGATA---GTACGTGGTAA
27090416 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTACATGTGGTAAAGCCGAATGACGAATGT
62 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTACATGTGGTAAAGCCGAATGACGAATGT
*
27090481 GAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATA
127 GAAATATATATGAGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATA
27090546 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
192 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27090591 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA-TGTG-TA-TACGTGGTAAAGCC
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAGTGTGATAGTACGTGGTAAAGCC
* *
27090653 GACTGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAA
66 GAATGGCTAATGTGAAATATATGTGTGATATGTACATGTGGTAAAGCCGAATGACGAATGTGAAA
* * *
27090718 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
131 TATATATGAGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTA
27090783 TATGTGGTAAAGCCGAATGGCTAATGTGAA
196 TATGTGGTAAAGCCGAATGGCTAATGTGAA
27090813 TGTTGTAACA
Statistics
Matches: 211, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
233 167 0.79
237 2 0.01
238 4 0.02
240 38 0.18
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (236 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAGTGTGATAGTACGTGGTAAAGCC
GAATGGCTAATGTGAAATATATGTGTGATATGTACATGTGGTAAAGCCGAATGACGAATGTGAAA
TATATATGAGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTA
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:27093035 original size:43 final size:42
Alignment explanation
Indices: 27092885--27093033 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 42
27092875 GATTACCGAG
* * * *
27092885 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATTGT
1 ATGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGT
* *
27092927 ATTGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTT
1 A-TGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * * * * * *
27092971 ATATGATATCGTGTAAGACCCTGTCTAGGATAGTGGCATCGAT
1 ATGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCG-T
27093014 ATGTGATAACATGTAAGACC
1 ATGTGATAACATGTAAGACC
27093034 CTATCCGGGA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 85 0.97
44 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:27093045 original size:43 final size:42
Alignment explanation
Indices: 27092885--27093051 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
27092875 GATTACCGAG
* * * * * *
27092885 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATTG-T
1 ATGTGATAACATGTAAGACCCTGTCTGGGATA-TGGCATCGAT
* * * * *
27092927 ATTGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTT
1 A-TGTGATAACATGTAAGACCCTGTCTGGGATA-TGGCATCGAT
* * * *
27092971 ATATGATATCGTGTAAGACCCTGTCTAGGATAGTGGCATCGAT
1 ATGTGATAACATGTAAGACCCTGTCTGGGATA-TGGCATCGAT
* *
27093014 ATGTGATAACATGTAAGACCCTATCCGGGATATGGCAT
1 ATGTGATAACATGTAAGACCCTGTCTGGGATATGGCAT
27093052 TGTATAAGTT
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 7 0.07
43 94 0.91
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
ATGTGATAACATGTAAGACCCTGTCTGGGATATGGCATCGAT
Found at i:27097156 original size:26 final size:26
Alignment explanation
Indices: 27097126--27097175 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27097116 TCTCATCTAT
27097126 ATTTTACCCACT-GTAAAATTTTGACG
1 ATTTTACCC-CTAGTAAAATTTTGACG
*
27097152 ATTTTACCCCTAGTTAAATTTTGA
1 ATTTTACCCCTAGTAAAATTTTGA
27097176 GAAAATAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACG
Found at i:27100892 original size:68 final size:67
Alignment explanation
Indices: 27100819--27100968 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
27100809 CATCATGTGT
* * * *
27100819 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
27100881 ATGTAG
62 ATGTAG
** * *
27100887 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
27100952 AG
66 AG
27100954 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
27100969 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:27100924 original size:64 final size:64
Alignment explanation
Indices: 27100843--27101026 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
27100833 AGACATTATG
* *
27100843 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
27100907 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
27100972 AA
63 AA
* * * *
27100974 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
27101027 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:27103602 original size:40 final size:41
Alignment explanation
Indices: 27103467--27103652 Score: 236
Period size: 41 Copynumber: 4.6 Consensus size: 41
27103457 TACTCGAATG
27103467 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
*
27103508 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAATCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* *
27103549 ACATCCGGACTAAGAT-CCGAAGG-TATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCT-TTTGTGCTAAGCGACT
* * * *
27103589 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* * *
27103629 ATATCCGGGTTAAGACCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
27103653 CTTGTGCGAG
Statistics
Matches: 128, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 59 0.46
41 67 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
Found at i:27103608 original size:81 final size:82
Alignment explanation
Indices: 27103469--27103622 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 82
27103459 CTCGAATGAT
* *
27103469 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
27103534 TTGTGCTAATCGACTAC
66 TTATGCTAATCGACTAC
27103551 ATCCGGACTAAGAT-CCGAAGG-TATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATCCGGACTAAG-TCCCGAAGGCT-TTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGC
27103613 ATTTATGCTA
64 ATTTATGCTA
27103623 GTGACCATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
81 40 0.60
82 26 0.39
83 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAATCGACTAC
Found at i:27109607 original size:28 final size:29
Alignment explanation
Indices: 27109574--27109645 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
27109564 TATAGTAAGT
* * *
27109574 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTAGAAC
*
27109602 TCGCACACTTAGTGCTATACAACTAGAAC
1 CCGCACACTTAGTGCTATACAACTAGAAC
27109631 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
27109646 CGAAATCAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
28 19 0.50
29 19 0.50
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTAGAAC
Found at i:27111700 original size:41 final size:41
Alignment explanation
Indices: 27111643--27111727 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
27111633 ACTTTTGTTG
27111643 TTTGGTGATGAAATATGAAAGATATGTATTAGATTAACATA
1 TTTGGTGATGAAATATGAAAGATATGTATTAGATTAACATA
27111684 TTTGGTGATGAAATATGAAAGATATGTATTAGATTAACATA
1 TTTGGTGATGAAATATGAAAGATATGTATTAGATTAACATA
27111725 TTT
1 TTT
27111728 TGTATTGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.39
Consensus pattern (41 bp):
TTTGGTGATGAAATATGAAAGATATGTATTAGATTAACATA
Found at i:27124767 original size:43 final size:41
Alignment explanation
Indices: 27124715--27124835 Score: 109
Period size: 43 Copynumber: 2.8 Consensus size: 41
27124705 TAAGAATACA
27124715 TCTGGGACATTGGCATCGACTTATGTTTACATGTAAGACCATG
1 TCTGGGACATTGGCATCGA-TT-TGTTTACATGTAAGACCATG
* * * * * *
27124758 TCTGTGACATCGTCATCGTATTTGATGT-CGTGTAAGACCCTG
1 TCTGGGACATTGGCATCG-ATTTG-TTTACATGTAAGACCATG
* *
27124800 TCTGGGACAGTGGCATCGATATTTGATTACATGTAA
1 TCTGGGACATTGGCATCG--ATTTGTTTACATGTAA
27124836 AACTTCGTCT
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
42 29 0.48
43 31 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (41 bp):
TCTGGGACATTGGCATCGATTTGTTTACATGTAAGACCATG
Found at i:27124802 original size:42 final size:43
Alignment explanation
Indices: 27124746--27124826 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
27124736 TATGTTTACA
* *
27124746 TGTAAGACCATGTCTGTGACA-TCGTCATCG-TATTTGATGTCG
1 TGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATGTCG
*
27124788 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGAT
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGAT
27124827 TACATGTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATGTCG
Found at i:27134723 original size:40 final size:40
Alignment explanation
Indices: 27134675--27134855 Score: 244
Period size: 40 Copynumber: 4.5 Consensus size: 40
27134665 CACTCGCTCG
** *
27134675 AATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACA
*
27134715 AATTCCTTCGGGACTTAGCCCGG-ATATAGTAACTAGCAC-
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACA
* *
27134754 AATGCCTTCGGGACTTAGCCCGGAATTAGGAACTCGCA-A
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACA
*
27134793 CAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACA
1 -AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACA
27134834 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
27134856 ATTATCATCC
Statistics
Matches: 127, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
39 32 0.25
40 94 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACA
Found at i:27134771 original size:79 final size:80
Alignment explanation
Indices: 27134675--27134855 Score: 262
Period size: 79 Copynumber: 2.3 Consensus size: 80
27134665 CACTCGCTCG
* ** *
27134675 AATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGC-ACAAATTCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGGAACTCGCAAC-AATGCCTTCGGGACTTAGCCCGG
27134738 -ATATAGTAACTAGCAC-
64 AAT-TAGTAACTAGCACA
27134754 AATGCCTTCGGGACTTAGCCCGGAATTAGGAACTCGCAACAATGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGGAACTCGCAACAATGCCTTCGGGACTTAGCCCGGAA
*
27134819 TTAGTCACTAGCACA
66 TTAGTAACTAGCACA
27134834 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
27134856 ATTATCATCC
Statistics
Matches: 93, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
79 65 0.70
80 28 0.30
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGGAACTCGCAACAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTAGCACA
Found at i:27138529 original size:13 final size:13
Alignment explanation
Indices: 27138492--27138529 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
27138482 TGTGAAATTT
* *
27138492 TAAAAAAATTATA
1 TAAAAAAATAAAA
27138505 TAAAAAAA-AAAA
1 TAAAAAAATAAAA
27138517 TAAAAAAATAAAA
1 TAAAAAAATAAAA
27138530 ATCAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:27142310 original size:29 final size:27
Alignment explanation
Indices: 27142292--27142361 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
27142282 ATATTAAGTC
27142292 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
27142319 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
27142347 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
27142362 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:27142355 original size:28 final size:28
Alignment explanation
Indices: 27142292--27142389 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
27142282 ATATTAAGTC
*
27142292 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
27142319 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
27142347 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
27142376 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27142390 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Done.