Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 93 of 332
Found at i:29788899 original size:4 final size:4
Alignment explanation
Indices: 29788890--29788918 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
29788880 CTGTAAATTG
29788890 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
29788919 CCTTGAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:29790831 original size:3 final size:3
Alignment explanation
Indices: 29790823--29790850 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
29790813 CCAAAAGTTC
29790823 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
29790851 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:29805752 original size:43 final size:41
Alignment explanation
Indices: 29805688--29805817 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 41
29805678 CATAGGATTT
*
29805688 TCGATATGTGATTACTTGTAAGACGACGTCTGGGACGTTGGCA
1 TCGATATGTGATTAC-AGTAAGAC-ACGTCTGGGACGTTGGCA
* * ** *
29805731 TCGATATGTGTTTACGAGTAAGACCCTGTCTGGGACAATGGCT
1 TCGATATGTGATTAC-AGTAAGACAC-GTCTGGGACGTTGGCA
* *
29805774 TCGATATGTGATTACATGTTAGACCACGTCTAGGACGTTGGCA
1 TCGATATGTGATTACA-GTAAGA-CACGTCTGGGACGTTGGCA
29805817 T
1 T
29805818 TGTACGATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
42 2 0.03
43 66 0.94
44 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
TCGATATGTGATTACAGTAAGACACGTCTGGGACGTTGGCA
Found at i:29807875 original size:48 final size:48
Alignment explanation
Indices: 29807804--29808124 Score: 339
Period size: 48 Copynumber: 6.7 Consensus size: 48
29807794 TATAATGTGT
*
29807804 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
** *** * *
29807852 GCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCGTTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTATGAGA
* *
29807900 GCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCCACATTAAGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *** * *
29807948 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTG-TTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCCACATTATGAGA
**
29807996 GCTAGTGTAAGACCATGTCTGGGACATGAAATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * *
29808044 GCCAATGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGA
* *
29808092 GCTAGTGTAAGACCATGTCTAGGATATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
29808125 TGCAATTTAC
Statistics
Matches: 224, Mismatches: 40, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
45 4 0.02
46 1 0.00
47 3 0.01
48 212 0.95
49 3 0.01
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:29807962 original size:96 final size:96
Alignment explanation
Indices: 29807798--29808124 Score: 501
Period size: 96 Copynumber: 3.4 Consensus size: 96
29807788 GGGTGTTATA
* *
29807798 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCTAGTGTAAG
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAG
*
29807863 ACCATGTCTGGGACATGGCATTAGCGTTGAT
66 ACCATGTCTGGGACATGGCATCAGCGTTGAT
* *
29807894 ATGTGTGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCCACATTAAGAGAGCCAGTGTAAG
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAG
*
29807959 ACCATGTCTGGGACATGGCATCAGTGTTGAT
66 ACCATGTCTGGGACATGGCATCAGCGTTGAT
** *
29807990 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGAAATCGGCCACATTATGAGAGCCAATGTAAG
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAG
* * *
29808055 ACCATGTCTGGGACATGGCATCGGCATTGAG
66 ACCATGTCTGGGACATGGCATCAGCGTTGAT
*** * *
29808086 ATGAAAGCTAGTGTAAGACCATGTCTAGGATATGGCATC
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
29808125 TGCAATTTAC
Statistics
Matches: 209, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 209 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCGTTGAT
Found at i:29810971 original size:59 final size:59
Alignment explanation
Indices: 29810899--29811020 Score: 244
Period size: 59 Copynumber: 2.1 Consensus size: 59
29810889 TTATGGATAC
29810899 TTTACGATGAGTACAGGTATGTATGCTAAACTTATGAGTAATGCTTTAATAAAGATCGA
1 TTTACGATGAGTACAGGTATGTATGCTAAACTTATGAGTAATGCTTTAATAAAGATCGA
29810958 TTTACGATGAGTACAGGTATGTATGCTAAACTTATGAGTAATGCTTTAATAAAGATCGA
1 TTTACGATGAGTACAGGTATGTATGCTAAACTTATGAGTAATGCTTTAATAAAGATCGA
29811017 TTTA
1 TTTA
29811021 TGTCCGTATG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (59 bp):
TTTACGATGAGTACAGGTATGTATGCTAAACTTATGAGTAATGCTTTAATAAAGATCGA
Found at i:29813860 original size:93 final size:93
Alignment explanation
Indices: 29813747--29813918 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
29813737 CGCCCATAAG
* *
29813747 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
29813812 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
29813840 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
29813905 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
29813919 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:29813915 original size:46 final size:46
Alignment explanation
Indices: 29813740--29813915 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
29813730 TGTAACCCGC
* * *
29813740 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
29813786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
29813836 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
29813879 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
29813916 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:29824752 original size:15 final size:15
Alignment explanation
Indices: 29824734--29824769 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
29824724 CATGAGTGGG
29824734 TTAATCCTAAGTGCC
1 TTAATCCTAAGTGCC
29824749 TTAATCCTAAGTGCC
1 TTAATCCTAAGTGCC
29824764 TTAATC
1 TTAATC
29824770 ATTTTGACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (15 bp):
TTAATCCTAAGTGCC
Found at i:29842791 original size:22 final size:23
Alignment explanation
Indices: 29842766--29842852 Score: 92
Period size: 22 Copynumber: 3.9 Consensus size: 23
29842756 TGATGAATAA
29842766 TAAGCTCTACTGAGCTGAAAC-G
1 TAAGCTCTACTGAGCTGAAACAG
29842788 TAAGCTCTA-TCGAGCTG-AACAG
1 TAAGCTCTACT-GAGCTGAAACAG
* *
29842810 TAAGCTCATAC-GAGTTGAAACGG
1 TAAGCTC-TACTGAGCTGAAACAG
* *
29842833 TAAGCTCCAATGAGCTGAAA
1 TAAGCTCTACTGAGCTGAAA
29842853 ATAATAAGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
21 4 0.07
22 29 0.54
23 21 0.39
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (23 bp):
TAAGCTCTACTGAGCTGAAACAG
Found at i:29842849 original size:45 final size:44
Alignment explanation
Indices: 29842766--29842851 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 44
29842756 TGATGAATAA
*
29842766 TAAGCTCTACTGAGCTGAAACGTAAGCTCTATCGAGCTGAACAG
1 TAAGCTCTACTGAGCTGAAACGTAAGCTCAATCGAGCTGAACAG
*
29842810 TAAGCTCATAC-GAGTTGAAACGGTAAGCTCCAAT-GAGCTGAA
1 TAAGCTC-TACTGAGCTGAAAC-GTAAGCT-CAATCGAGCTGAA
29842852 AATAATAAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
44 16 0.43
45 18 0.49
46 3 0.08
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (44 bp):
TAAGCTCTACTGAGCTGAAACGTAAGCTCAATCGAGCTGAACAG
Found at i:29847259 original size:48 final size:48
Alignment explanation
Indices: 29847203--29847382 Score: 252
Period size: 48 Copynumber: 3.8 Consensus size: 48
29847193 TTAATGAGAT
* *
29847203 CCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGAG
* *
29847251 CCAGTGTAAGACCATGTCTGGTACATGGCATCAGCGTTGATATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGAG
* * ** *
29847299 CCAGTGTAAGACCATGTCTAGGACATGGCATTAGTTTTGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGAG
* * *
29847347 CTAGAGTAAGACCATGTTTGGGACATGGCATCAGCA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
29847383 CTGACATGAG
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGAG
Found at i:29847405 original size:96 final size:96
Alignment explanation
Indices: 29847196--29847409 Score: 234
Period size: 96 Copynumber: 2.2 Consensus size: 96
29847186 ACCATGGTTA
* * * * * *
29847196 ATGAGATCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGAGCCAGTGTAAG
1 ATGAGAGCCAGTATAAGACCATGTCTAGGACATGGCATCAGCATTGATATGTGAGCCAGAGTAAG
* ** *
29847261 ACCATGTCTGGTACATGGCATCAGCGTTGAT
66 ACCATGTCTGGGACATGGCATCAGCACTGAC
* * * ** * *
29847292 ATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTAGTTTTGATATGTGTGCTAGAGTAAG
1 ATGAGAGCCAGTATAAGACCATGTCTAGGACATGGCATCAGCATTGATATGTGAGCCAGAGTAAG
*
29847357 ACCATGTTTGGGACATGGCATCAGCACTGAC
66 ACCATGTCTGGGACATGGCATCAGCACTGAC
29847388 ATGAGA-CTTC-GTATAAGACCAT
1 ATGAGAGC--CAGTATAAGACCAT
29847410 ATCCAGGATA
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
95 1 0.01
96 96 0.98
97 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (96 bp):
ATGAGAGCCAGTATAAGACCATGTCTAGGACATGGCATCAGCATTGATATGTGAGCCAGAGTAAG
ACCATGTCTGGGACATGGCATCAGCACTGAC
Found at i:29849015 original size:19 final size:19
Alignment explanation
Indices: 29848991--29849076 Score: 163
Period size: 19 Copynumber: 4.5 Consensus size: 19
29848981 GCCTAAGGAC
29848991 ACGGGCGTGTCGAAGGCAT
1 ACGGGCGTGTCGAAGGCAT
29849010 ACGGGCGTGTCGAAGGCAT
1 ACGGGCGTGTCGAAGGCAT
*
29849029 ACAGGCGTGTCGAAGGCAT
1 ACGGGCGTGTCGAAGGCAT
29849048 ACGGGCGTGTCGAAGGCAT
1 ACGGGCGTGTCGAAGGCAT
29849067 ACGGGCGTGT
1 ACGGGCGTGT
29849077 TCCCGTGTCC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.21, C:0.21, G:0.42, T:0.16
Consensus pattern (19 bp):
ACGGGCGTGTCGAAGGCAT
Found at i:29850069 original size:28 final size:30
Alignment explanation
Indices: 29850031--29850090 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
29850021 TAAAGTGATT
* *
29850031 TTGAGTAAAAGTGCATATT-AGGGATTAAA
1 TTGAGTAAAAGTGCAAATTGAGAGATTAAA
*
29850060 TTGAG-AAAAGTGTAAATTGAGAGATTAAA
1 TTGAGTAAAAGTGCAAATTGAGAGATTAAA
29850089 TT
1 TT
29850091 ATGAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (30 bp):
TTGAGTAAAAGTGCAAATTGAGAGATTAAA
Found at i:29856863 original size:26 final size:26
Alignment explanation
Indices: 29856827--29856879 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29856817 AAGTTTTGAA
*
29856827 TGCAGTTTTTGGCATGTCTGAATCTT
1 TGCAGTTTTTGGAATGTCTGAATCTT
29856853 TGCAGTTTTTGGAATGTCTGAATCTT
1 TGCAGTTTTTGGAATGTCTGAATCTT
29856879 T
1 T
29856880 TACTCACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.13, G:0.23, T:0.47
Consensus pattern (26 bp):
TGCAGTTTTTGGAATGTCTGAATCTT
Found at i:29886577 original size:40 final size:40
Alignment explanation
Indices: 29886522--29886704 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
29886512 ATTTGAATAC
29886522 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
29886562 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
29886602 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
29886642 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
29886682 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
29886705 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:29894941 original size:40 final size:40
Alignment explanation
Indices: 29894886--29895068 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
29894876 ATTTGAATAC
29894886 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
29894926 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
29894966 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
29895006 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
29895046 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
29895069 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:29905030 original size:18 final size:18
Alignment explanation
Indices: 29905007--29905042 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
29904997 GCTTAGTAAG
29905007 CCATATACAAATAAAGTA
1 CCATATACAAATAAAGTA
29905025 CCATATACAAATAAAGTA
1 CCATATACAAATAAAGTA
29905043 ATCACATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.22
Consensus pattern (18 bp):
CCATATACAAATAAAGTA
Found at i:29907706 original size:43 final size:43
Alignment explanation
Indices: 29907659--29907848 Score: 258
Period size: 43 Copynumber: 4.4 Consensus size: 43
29907649 TATCCTAAAT
* * *
29907659 ATGGTCTTACATGTTATCAC-ATATCGATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCACAATA-CAATGCCAATGTCCCAGAC
* * *
29907702 ATGGTCTTACACGAAATCA-TATAACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAAT-ACAATGCCAATGTCCCAGAC
*
29907745 ATCGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
* * *
29907788 ATGGTCTTAAATGTAAACACAATACAATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
29907831 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
29907849 GCATCTCGGT
Statistics
Matches: 129, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 126 0.98
44 3 0.02
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
Found at i:29910086 original size:10 final size:10
Alignment explanation
Indices: 29910067--29910105 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
29910057 TGCTTTTGTA
29910067 CATGATATGC
1 CATGATATGC
*
29910077 CATAATATGC
1 CATGATATGC
29910087 ACATGATATGC
1 -CATGATATGC
29910098 CATGATAT
1 CATGATAT
29910106 ATTCACATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:29910092 original size:21 final size:21
Alignment explanation
Indices: 29910066--29910105 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
29910056 CTGCTTTTGT
29910066 ACATGATATGCCATAATATGC
1 ACATGATATGCCATAATATGC
*
29910087 ACATGATATGCCATGATAT
1 ACATGATATGCCATAATAT
29910106 ATTCACATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATAATATGC
Found at i:29910233 original size:24 final size:24
Alignment explanation
Indices: 29910201--29910247 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
29910191 CAGTTTGTCA
**
29910201 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
29910224 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
29910248 ATGATAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:29915297 original size:17 final size:17
Alignment explanation
Indices: 29915257--29915299 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
29915247 GAGGCTGAAA
*
29915257 TCGGGCACAATGGGCTT
1 TCGGGCCCAATGGGCTT
29915274 TCGGGCCCAATGGGCTT
1 TCGGGCCCAATGGGCTT
29915291 TCGGGCCCA
1 TCGGGCCCA
29915300 TTTGGGTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.14, C:0.30, G:0.35, T:0.21
Consensus pattern (17 bp):
TCGGGCCCAATGGGCTT
Found at i:29915649 original size:10 final size:10
Alignment explanation
Indices: 29915634--29915672 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
29915624 TGCTTTTGTA
29915634 CATGATATGC
1 CATGATATGC
*
29915644 CATGATATAC
1 CATGATATGC
29915654 ACATGATATGC
1 -CATGATATGC
*
29915665 CTTGATAT
1 CATGATAT
29915673 ATTCACATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:29915680 original size:23 final size:21
Alignment explanation
Indices: 29915633--29915673 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
29915623 CTGCTTTTGT
29915633 ACATGATATGCCATGATATAC
1 ACATGATATGCCATGATATAC
*
29915654 ACATGATATGCCTTGATATA
1 ACATGATATGCCATGATATA
29915674 TTCACATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (21 bp):
ACATGATATGCCATGATATAC
Found at i:29915787 original size:25 final size:24
Alignment explanation
Indices: 29915719--29915788 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
29915709 AGGAAGTGCT
*
29915719 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCC-AGTTTACCA
*
29915744 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCC-CAGTTTACCA
*
29915769 AAAACGGCTTTGCACCAGTT
1 AAAAGGGCTTTGC-CCAGTT
29915789 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
25 38 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTACCA
Found at i:29915801 original size:24 final size:25
Alignment explanation
Indices: 29915719--29915801 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 25
29915709 AGGAAGTGCT
*
29915719 AAAAG-GGCTTTGCC-CTAGTTTACC
1 AAAAGAGGCTTTGCCTC-AGTTTATC
29915743 GAAAAG-GGCTTTGCCTCAGTTTATC
1 -AAAAGAGGCTTTGCCTCAGTTTATC
*
29915768 AAAA-ACGGCTTTGCAC-CAG-TTATT
1 AAAAGA-GGCTTTGC-CTCAGTTTATC
29915792 AAAAGAGGCT
1 AAAAGAGGCT
29915802 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
24 16 0.31
25 33 0.65
26 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCTCAGTTTATC
Found at i:29925918 original size:65 final size:65
Alignment explanation
Indices: 29925814--29925944 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
29925804 ACACGCTGCG
29925814 AACTTACTCTGTATGCATAACAGCCTAATACACCACTCCTTAGGTGTAGCCCTGGCATCGTTCTT
1 AACTTACTCTGTATGCATAACAGCCTAATACACCACTCCTTAGGTGTAGCCCTGGCATCGTTCTT
*
29925879 AACTTGCTCTGTATGCATAACAGCCTAATACACCACTCCTTAGGTGTAGCCCTGGCATCGTTCTT
1 AACTTACTCTGTATGCATAACAGCCTAATACACCACTCCTTAGGTGTAGCCCTGGCATCGTTCTT
29925944 A
1 A
29925945 TTGGCGTAGA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (65 bp):
AACTTACTCTGTATGCATAACAGCCTAATACACCACTCCTTAGGTGTAGCCCTGGCATCGTTCTT
Found at i:29928189 original size:40 final size:39
Alignment explanation
Indices: 29928134--29928344 Score: 208
Period size: 40 Copynumber: 5.3 Consensus size: 39
29928124 ATTTGAATGA
* *
29928134 TATCCGGGCTAAGTCCCGAGGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-TT
* *
29928174 TATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGAGTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-TT
* * *
29928214 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * * *
29928254 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * * * * * *
29928294 TACCCGGGTTAAGACCCGGAGGCAATTGTGCTTGTGGTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
29928333 ATATCC-GGCTAA
1 -TATCCGGGCTAA
29928345 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 8 0.05
40 139 0.93
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
Found at i:29934912 original size:27 final size:27
Alignment explanation
Indices: 29934870--29934983 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
29934860 CAGCATGGCT
* *
29934870 ACCAGA-ACAGATATTGTGACAGAGTC
1 ACCAGATACAGATATTGTGGCAGAGCC
*
29934896 ACCAGATACATATATTGTGGCAGAGCC
1 ACCAGATACAGATATTGTGGCAGAGCC
* *
29934923 ACTAGAAACAGATATTTGTGGCAGAGCC
1 ACCAGATACAGATA-TTGTGGCAGAGCC
* *
29934951 ACCAGAT-TAGATGTTTGTGGCAGAGCC
1 ACCAGATACAGAT-ATTGTGGCAGAGCC
29934978 ACCAGA
1 ACCAGA
29934984 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.08
27 51 0.68
28 18 0.24
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
ACCAGATACAGATATTGTGGCAGAGCC
Found at i:29934969 original size:55 final size:54
Alignment explanation
Indices: 29934870--29934984 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
29934860 CAGCATGGCT
*
29934870 ACCAG-AACAGATATTGTGACAGAGTCACCAGATACATATATTGTGGCAGAGCC
1 ACCAGAAACAGATATTGTGACAGAGCCACCAGATACATATATTGTGGCAGAGCC
* * * *
29934923 ACTAGAAACAGATATTTGTGGCAGAGCCACCAGATTAGATGT-TTGTGGCAGAGCC
1 ACCAGAAACAGATA-TTGTGACAGAGCCACCAGA-TACATATATTGTGGCAGAGCC
29934978 ACCAGAA
1 ACCAGAA
29934985 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 4 0.08
54 8 0.15
55 36 0.68
56 5 0.09
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (54 bp):
ACCAGAAACAGATATTGTGACAGAGCCACCAGATACATATATTGTGGCAGAGCC
Found at i:29936199 original size:25 final size:22
Alignment explanation
Indices: 29936145--29936199 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
29936135 TTTCGGCCAG
29936145 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
29936167 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
29936192 AGGAAGAA
1 A-GAAGAA
29936200 TTCAGCACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:29937609 original size:56 final size:56
Alignment explanation
Indices: 29937523--29937647 Score: 189
Period size: 56 Copynumber: 2.2 Consensus size: 56
29937513 CCTACGTTTC
* **
29937523 ACACTTTGCCATAGAT-CAACCATGGTCTTATCTGTCAATTCATCACTGATCACTGA
1 ACACTTTGCCAT-GGTCCAACCATGGTCTTATCCATCAATTCATCACTGATCACTGA
*
29937579 ACACTTTGTCATGGTCCAACCATGGTCTTATCCATCAATTCATCACTGATCACTGA
1 ACACTTTGCCATGGTCCAACCATGGTCTTATCCATCAATTCATCACTGATCACTGA
*
29937635 ACAGTTTGCCATG
1 ACACTTTGCCATG
29937648 TTTAGCACAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
55 2 0.03
56 60 0.97
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (56 bp):
ACACTTTGCCATGGTCCAACCATGGTCTTATCCATCAATTCATCACTGATCACTGA
Found at i:29937669 original size:27 final size:27
Alignment explanation
Indices: 29937639--29937701 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
29937629 CACTGAACAG
**
29937639 TTTGCCATGTTTAGCACACTATATCAC
1 TTTGCCATAATTAGCACACTATATCAC
* * *
29937666 TTTGCCATAATTGGCACACTTTATCAT
1 TTTGCCATAATTAGCACACTATATCAC
*
29937693 TTTTCCATA
1 TTTGCCATA
29937702 GTTCAACTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.41
Consensus pattern (27 bp):
TTTGCCATAATTAGCACACTATATCAC
Found at i:29937828 original size:31 final size:31
Alignment explanation
Indices: 29937764--29937968 Score: 304
Period size: 31 Copynumber: 6.5 Consensus size: 31
29937754 AGTGTAGCTA
* *
29937764 AAGCTACCACTTATCACTTG-TCACTTGTAGCCG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCG
*
29937797 AAGCTACCACTATTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
29937828 AAGCTATCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* * *
29937859 GAGGTACCACTTTTCACTGATCTGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
29937890 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
29937921 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
29937952 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
29937969 ATTTTACACA
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
31 137 0.87
32 2 0.01
33 18 0.11
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCG
Found at i:29938009 original size:32 final size:33
Alignment explanation
Indices: 29937973--29938073 Score: 109
Period size: 33 Copynumber: 3.1 Consensus size: 33
29937963 TTTCACATTT
* *
29937973 TACACACAAGACGTACATTTCCGTTTCAAG-TG
1 TACACACAAGATGTACATTTCCTTTTCAAGTTG
**
29938005 TACACACAA-AGTGTATGTTTCCTTTTCAAGTTG
1 TACACACAAGA-TGTACATTTCCTTTTCAAGTTG
* *
29938038 TACACACACAG-TGTACATTTCCTTTTCCATTTG
1 TACACACA-AGATGTACATTTCCTTTTCAAGTTG
29938071 TAC
1 TAC
29938074 CATTTAGGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
31 1 0.02
32 24 0.42
33 31 0.54
34 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (33 bp):
TACACACAAGATGTACATTTCCTTTTCAAGTTG
Found at i:29938045 original size:33 final size:33
Alignment explanation
Indices: 29937985--29938073 Score: 117
Period size: 33 Copynumber: 2.7 Consensus size: 33
29937975 CACACAAGAC
*
29937985 GTACATTTCCGTTTCAAG-TGTACACACAAAGT
1 GTACATTTCCTTTTCAAGTTGTACACACAAAGT
** *
29938017 GTATGTTTCCTTTTCAAGTTGTACACACACAGT
1 GTACATTTCCTTTTCAAGTTGTACACACAAAGT
* *
29938050 GTACATTTCCTTTTCCATTTGTAC
1 GTACATTTCCTTTTCAAGTTGTAC
29938074 CATTTAGGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 15 0.31
33 33 0.69
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.39
Consensus pattern (33 bp):
GTACATTTCCTTTTCAAGTTGTACACACAAAGT
Found at i:29939827 original size:31 final size:31
Alignment explanation
Indices: 29939766--29939840 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 31
29939756 CTAAATAAAT
*
29939766 AATATTAAAATAATAATAAATATCTCATTAA
1 AATATTAAAATAATAATAAATATCTAATTAA
** *
29939797 AATATTAATAA-AATAATATTTTTCTAATTAA
1 AATATTAA-AATAATAATAAATATCTAATTAA
29939828 TTAAT-TTAAAATA
1 --AATATTAAAATA
29939841 TCATCAACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
31 26 0.72
32 7 0.19
33 3 0.08
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (31 bp):
AATATTAAAATAATAATAAATATCTAATTAA
Found at i:29940241 original size:18 final size:19
Alignment explanation
Indices: 29940205--29940242 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
29940195 AACTCAAAAT
29940205 TTTTCTTTTTGTCACTTTA
1 TTTTCTTTTTGTCACTTTA
29940224 TTTTCTTATTT-T-ACTTTA
1 TTTTCTT-TTTGTCACTTTA
29940242 T
1 T
29940243 CAAGGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTCTTTTTGTCACTTTA
Found at i:29942520 original size:31 final size:31
Alignment explanation
Indices: 29942459--29942533 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 31
29942449 CTAAATAAAT
*
29942459 AATATTAAAATAATAATAAATATCTCATTAA
1 AATATTAAAATAATAATAAATATCTAATTAA
** *
29942490 AATATTAATAA-AATAATATTTTTCTAATTAA
1 AATATTAA-AATAATAATAAATATCTAATTAA
29942521 TTAAT-TTAAAATA
1 --AATATTAAAATA
29942534 TCATCAACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
31 26 0.72
32 7 0.19
33 3 0.08
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (31 bp):
AATATTAAAATAATAATAAATATCTAATTAA
Found at i:29951790 original size:37 final size:37
Alignment explanation
Indices: 29951731--29951839 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
29951721 AGCTCAGACG
* *
29951731 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
29951768 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
29951805 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
29951840 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:29952101 original size:98 final size:98
Alignment explanation
Indices: 29951985--29952266 Score: 489
Period size: 98 Copynumber: 2.9 Consensus size: 98
29951975 GCACATCGCC
*
29951985 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATTTCACATT
29952050 GACCATTCGGCTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCACATATGCATATCTCA
* *
29952083 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATTTCACATT
*
29952148 GACCATTCGACTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCACATATGCATATCTCA
*
29952181 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATTTCACATT
29952244 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCGGCTTTACCACATAT
29952267 ATGCATGTTC
Statistics
Matches: 176, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
95 1 0.01
96 34 0.19
98 141 0.80
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATTTCACATT
GACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:29952109 original size:48 final size:48
Alignment explanation
Indices: 29951985--29952267 Score: 453
Period size: 48 Copynumber: 5.8 Consensus size: 48
29951975 GCACATCGCC
*
29951985 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
29952035 TAAATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
29952083 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
29952131 TACATATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCA
1 TAC--ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
29952181 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
29952229 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
29952268 TGCATGTTCA
Statistics
Matches: 218, Mismatches: 9, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
48 128 0.59
49 4 0.02
50 86 0.39
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:29952316 original size:47 final size:47
Alignment explanation
Indices: 29952237--29952477 Score: 338
Period size: 47 Copynumber: 5.1 Consensus size: 47
29952227 CATACATATT
* * * * * *
29952237 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
29952284 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
29952331 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * *
29952378 TCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * ***
29952425 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
29952472 TCACAT
1 TCACAT
29952478 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:29952333 original size:25 final size:25
Alignment explanation
Indices: 29952305--29952382 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
29952295 ATTCGGCCTT
29952305 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
* *
29952330 AT--CACAT-TGGCCAT--TCGGCCTT-
1 ATCACACATAT-G-CATGCTC-ACATTC
29952352 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
29952377 ATCACA
1 ATCACA
29952383 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 5 0.12
23 12 0.30
24 12 0.30
25 11 0.28
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:29952404 original size:22 final size:22
Alignment explanation
Indices: 29952330--29952448 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
29952320 GCTCACATTC
*
29952330 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGACCTT
*
29952352 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGACCTT
29952376 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
* *
29952399 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
29952423 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
29952446 ATC
1 ATC
29952449 TCATATATAC
Statistics
Matches: 73, Mismatches: 8, Indels: 32
0.65 0.07 0.28
Matches are distributed among these distances:
22 18 0.25
23 20 0.27
24 20 0.27
25 15 0.21
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:29960673 original size:24 final size:24
Alignment explanation
Indices: 29960646--29960705 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
29960636 AGCTCCCGTT
29960646 ATATGGCTCTTTGTGAACTTCCCG
1 ATATGGCTCTTTGTGAACTTCCCG
* *
29960670 ATATGGTTCTTTGTGAACTTCCTG
1 ATATGGCTCTTTGTGAACTTCCCG
*
29960694 ATTATAGCTCTT
1 A-TATGGCTCTT
29960706 ATGAGCTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 23 0.74
25 8 0.26
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (24 bp):
ATATGGCTCTTTGTGAACTTCCCG
Found at i:29960714 original size:24 final size:24
Alignment explanation
Indices: 29960687--29960763 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
29960677 TCTTTGTGAA
29960687 CTTCCTGATTATAGCTCTTATGAG
1 CTTCCTGATTATAGCTCTTATGAG
* * * *
29960711 CTTCCCGTTATATAGC-CTGGATAAG
1 CTTCCTGAT-TATAGCTCT-TATGAG
29960736 CTTCCTGATTATAGCTCTTATGAG
1 CTTCCTGATTATAGCTCTTATGAG
29960760 CTTC
1 CTTC
29960764 TCGTTATATA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
24 23 0.55
25 19 0.45
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (24 bp):
CTTCCTGATTATAGCTCTTATGAG
Found at i:29960724 original size:25 final size:25
Alignment explanation
Indices: 29960696--29960827 Score: 94
Period size: 25 Copynumber: 5.4 Consensus size: 25
29960686 ACTTCCTGAT
29960696 TATAGCTCTTATGAGCTTCCCGTTA
1 TATAGCTCTTATGAGCTTCCCGTTA
* * * *
29960721 TATAGC-CTGGATAAGCTTCCTGAT-
1 TATAGCTCT-TATGAGCTTCCCGTTA
*
29960745 TATAGCTCTTATGAGCTTCTCGTTA
1 TATAGCTCTTATGAGCTTCCCGTTA
* * *
29960770 TATAGC-CTGGATAAGCTT-CC-TGA
1 TATAGCTCT-TATGAGCTTCCCGTTA
* * *
29960793 TATAACTCTTTGTGAGCTTCCCATTA
1 TATAGCTC-TTATGAGCTTCCCGTTA
*
29960819 TATGGCTCT
1 TATAGCTCT
29960828 AGAGAGAGCT
Statistics
Matches: 79, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
23 7 0.09
24 28 0.35
25 36 0.46
26 8 0.10
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (25 bp):
TATAGCTCTTATGAGCTTCCCGTTA
Found at i:29960740 original size:49 final size:49
Alignment explanation
Indices: 29960687--29960821 Score: 218
Period size: 49 Copynumber: 2.8 Consensus size: 49
29960677 TCTTTGTGAA
29960687 CTTCCTGATTATAGCTCTTATGAGCTTCCCGTTATATAGCCTGGATAAG
1 CTTCCTGATTATAGCTCTTATGAGCTTCCCGTTATATAGCCTGGATAAG
*
29960736 CTTCCTGATTATAGCTCTTATGAGCTTCTCGTTATATAGCCTGGATAAG
1 CTTCCTGATTATAGCTCTTATGAGCTTCCCGTTATATAGCCTGGATAAG
* * *
29960785 CTTCCTGA-TATAACTCTTTGTGAGCTTCCCATTATAT
1 CTTCCTGATTATAGCTC-TTATGAGCTTCCCGTTATAT
29960822 GGCTCTAGAG
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
48 7 0.09
49 73 0.91
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (49 bp):
CTTCCTGATTATAGCTCTTATGAGCTTCCCGTTATATAGCCTGGATAAG
Found at i:29968790 original size:25 final size:25
Alignment explanation
Indices: 29968762--29968876 Score: 115
Period size: 25 Copynumber: 4.6 Consensus size: 25
29968752 CGGGCACACC
*
29968762 ACAGCTTGTATGAGCTTCTCAATTT
1 ACAGCTCGTATGAGCTTCTCAATTT
* * *
29968787 ACAGCTCGTATGAGTTTCCCGATTT
1 ACAGCTCGTATGAGCTTCTCAATTT
* *
29968812 ACAGTTCGTATGAGCTT-TCCAATTC
1 ACAGCTCGTATGAGCTTCT-CAATTT
* * * *
29968837 ACAGCTCATATGAGCTTCCCGATTC
1 ACAGCTCGTATGAGCTTCTCAATTT
*
29968862 ATAGCTCGTATGAGC
1 ACAGCTCGTATGAGC
29968877 ATACAGGAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (25 bp):
ACAGCTCGTATGAGCTTCTCAATTT
Found at i:29968849 original size:50 final size:50
Alignment explanation
Indices: 29968761--29968876 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
29968751 GCGGGCACAC
* * * *
29968761 CACAGCTTGTATGAGCTTCTCAATTTACAGCTCGTATGAGTTTCCCGATT
1 CACAGCTCGTATGAGCTTCTCAATTCACAGCTCATATGAGCTTCCCGATT
* *
29968811 TACAGTTCGTATGAGCTT-TCCAATTCACAGCTCATATGAGCTTCCCGATT
1 CACAGCTCGTATGAGCTTCT-CAATTCACAGCTCATATGAGCTTCCCGATT
*
29968861 CATAGCTCGTATGAGC
1 CACAGCTCGTATGAGC
29968877 ATACAGGAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.02
50 55 0.98
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (50 bp):
CACAGCTCGTATGAGCTTCTCAATTCACAGCTCATATGAGCTTCCCGATT
Found at i:29974202 original size:49 final size:50
Alignment explanation
Indices: 29974135--29974381 Score: 300
Period size: 49 Copynumber: 5.0 Consensus size: 50
29974125 AGCTATTGTG
* *
29974135 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
29974185 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
29974235 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
29974285 AGGTCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
29974335 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
29974382 CTTTGGCTAC
Statistics
Matches: 165, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.48
50 47 0.28
51 38 0.23
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:29974272 original size:28 final size:27
Alignment explanation
Indices: 29974240--29974323 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
29974230 AACTTCGATC
29974240 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
* * *
29974268 ACGTGTATCAG-A-T-GGT-TAGGT-C-
1 ACGTGTGT-AGTACTAAGTGCAGGTACT
29974290 ACGTGTGTAGTACTAAGTGCAGGTTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
29974318 ACGTGT
1 ACGTGT
29974324 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTGCAGGTACT
Found at i:29980385 original size:22 final size:23
Alignment explanation
Indices: 29980354--29980479 Score: 87
Period size: 24 Copynumber: 5.2 Consensus size: 23
29980344 ATAGCCATTT
*
29980354 TACCCCACAGGGTA-GGTAATTC
1 TACCCTACAGGGTATGGTAATTC
*
29980376 TACCCTACAGGGTATTCGGTATTTC
1 TACCCTACAGGGTA-T-GGTAATTC
*
29980401 TA-CCTACAGGGTATTTTGTAATTC
1 TACCCTACAGGGTA--TGGTAATTC
*
29980425 TA-TCTACAGGAGTATTCGGTAATTC
1 TACCCTACAGG-GTA-T-GGTAATTC
* *
29980450 TATCCTACAGGAGTATTTCGTAATTC
1 TACCCTACAGG-GTA--TGGTAATTC
29980476 TACC
1 TACC
29980480 AGGGATATTT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
22 13 0.15
24 28 0.32
25 23 0.26
26 21 0.24
27 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (23 bp):
TACCCTACAGGGTATGGTAATTC
Found at i:29980440 original size:49 final size:51
Alignment explanation
Indices: 29980369--29980479 Score: 165
Period size: 49 Copynumber: 2.2 Consensus size: 51
29980359 CACAGGGTAG
* *
29980369 GTAATTCTACCCTACAGGGTATTCGGTATTTCTA-CCTACAGG-GTATTTT
1 GTAATTCTACCCTACAGGGTATTCGGTAATTCTATCCTACAGGAGTATTTC
*
29980418 GTAATTCTA-TCTACAGGAGTATTCGGTAATTCTATCCTACAGGAGTATTTC
1 GTAATTCTACCCTACAGG-GTATTCGGTAATTCTATCCTACAGGAGTATTTC
29980469 GTAATTCTACC
1 GTAATTCTACC
29980480 AGGGATATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
48 7 0.13
49 24 0.44
50 8 0.15
51 15 0.28
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (51 bp):
GTAATTCTACCCTACAGGGTATTCGGTAATTCTATCCTACAGGAGTATTTC
Found at i:29980492 original size:49 final size:48
Alignment explanation
Indices: 29980382--29980501 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 48
29980372 ATTCTACCCT
* *
29980382 ACAGGG-TATTCGGTATTTCTACCTACAGGGTATTTTGTAATTCTATC
1 ACAGGGATATTCGGTAATTCTACCTACAGGGTATTTCGTAATTCTATC
29980429 TACA-GGAGTATTCGGTAATTCTATCCTACAGGAGTATTTCGTAATTCTA-C
1 -ACAGGGA-TATTCGGTAATTCTA-CCTACAGG-GTATTTCGTAATTCTATC
29980479 -CAGGGATATTTCGGTAATTCTAC
1 ACAGGGATA-TTCGGTAATTCTAC
29980502 AACTTATCCA
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
47 2 0.03
48 8 0.12
49 30 0.47
50 9 0.14
51 15 0.23
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (48 bp):
ACAGGGATATTCGGTAATTCTACCTACAGGGTATTTCGTAATTCTATC
Found at i:29980499 original size:23 final size:26
Alignment explanation
Indices: 29980368--29980501 Score: 151
Period size: 24 Copynumber: 5.4 Consensus size: 26
29980358 CCACAGGGTA
29980368 GGTAATTCTACCCTACAGG-GTA-TTC
1 GGTAATTCTA-CCTACAGGAGTATTTC
*
29980393 GGTATTTCTACCTACAGG-GTATTT-
1 GGTAATTCTACCTACAGGAGTATTTC
* *
29980417 TGTAATTCTATCTACAGGAGTA-TTC
1 GGTAATTCTACCTACAGGAGTATTTC
29980442 GGTAATTCTATCCTACAGGAGTATTTC
1 GGTAATTCTA-CCTACAGGAGTATTTC
*
29980469 -GTAATTCTACC-A-GGGA-TATTTC
1 GGTAATTCTACCTACAGGAGTATTTC
29980491 GGTAATTCTAC
1 GGTAATTCTAC
29980502 AACTTATCCA
Statistics
Matches: 96, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
22 6 0.06
23 13 0.14
24 29 0.30
25 25 0.26
26 20 0.21
27 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
GGTAATTCTACCTACAGGAGTATTTC
Found at i:29989527 original size:26 final size:27
Alignment explanation
Indices: 29989498--29989551 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
29989488 TCACACAAGT
*
29989498 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
29989524 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
29989551 T
1 T
29989552 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:29989694 original size:27 final size:27
Alignment explanation
Indices: 29989552--29989697 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
29989542 GGGGCAAAAT
* *
29989552 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
29989579 GGTAATTTTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
29989606 GGTATTTCTACCCTACAAGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
29989633 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
29989660 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
29989687 GGTAATTCTAC
1 GGTAATTCTAC
29989698 AACTTATCCA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:30001243 original size:46 final size:44
Alignment explanation
Indices: 30001162--30001273 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 44
30001152 GTGTTGCCAG
* * * *
30001162 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTGAA
1 TGTAAGACATGTCTTGGACATACATCAGCCTCGAGATGT--GTCAA
*
30001208 TGTAAGAGATGTCTTGGACATACATCAG-CTACGAGATGTGTCAA
1 TGTAAGACATGTCTTGGACATACATCAGCCT-CGAGATGTGTCAA
*
30001252 TGTAAGACCATGTCTTAGACAT
1 TGTAAGA-CATGTCTTGGACAT
30001274 GGCATCGGCA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 11 0.19
45 14 0.25
46 32 0.56
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
TGTAAGACATGTCTTGGACATACATCAGCCTCGAGATGTGTCAA
Found at i:30001371 original size:99 final size:96
Alignment explanation
Indices: 30001247--30001422 Score: 246
Period size: 99 Copynumber: 1.8 Consensus size: 96
30001237 TACGAGATGT
* * *
30001247 GTCAATGTAAGACCATGTCTTAGACATGGCATCGGCATGGATATGTGA-GAGCTAGTGTAAGACC
1 GTCAATGTAAGACCATGTCTGAGACATGGCATCGAC-TGG--ATG-GATGAGCCAGTGTAAGACC
* *
30001311 ATGTTTGGGACATGGCGTCAACCTTGATTTCGATA
62 ATGTCTAGGACATGGCGTCAACCTTGATTTCGATA
* *
30001346 GTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGT
1 GTCAATGTAAGACCATGTCTGAGACATGGCATCGACTGGATGGATGAGCCAGTGTAAGACCATGT
30001411 CTAGGACATGGC
66 CTAGGACATGGC
30001423 ATCAGCATTA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.03
96 32 0.46
98 2 0.03
99 33 0.48
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
GTCAATGTAAGACCATGTCTGAGACATGGCATCGACTGGATGGATGAGCCAGTGTAAGACCATGT
CTAGGACATGGCGTCAACCTTGATTTCGATA
Found at i:30001372 original size:49 final size:47
Alignment explanation
Indices: 30001295--30001426 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 47
30001285 GGATATGTGA
* * * *
30001295 GAGCTAGTGTAAGACCATGTTTGGGACATGGCGTCAACCTTGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAA-CTTGA--TCGAT
* * *
30001345 -AGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGATCGAT
30001391 GAGCCAGTGTAAGACCATGTCT-AGGACATGGCATCA
1 GAGCCAGTGTAAGACCATGTCTGA-GACATGGCATCA
30001427 GCATTATACC
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 5 0.07
47 31 0.44
48 5 0.07
49 30 0.42
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGATCGAT
Found at i:30001412 original size:47 final size:47
Alignment explanation
Indices: 30001252--30001425 Score: 165
Period size: 49 Copynumber: 3.6 Consensus size: 47
30001242 GATGTGTCAA
* * * *
30001252 TGTAAGACCATGTCTTAGACATGGCATCGGCATGGATATGTGA-GAGCTAG
1 TGTAAGACCATGTCTGAGACATGGCATCGAC-TTG--ATG-GATGAGCCAG
* * * * * *
30001302 TGTAAGACCATGTTTGGGACATGGCGTCAACCTTGATTTCGAT-AGTCAG
1 TGTAAGACCATGTCTGAGACATGGCATCGA-CTTGA--TGGATGAGCCAG
30001351 TGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGATGAGCCAG
30001398 TGTAAGACCATGTCT-AGGACATGGCATC
1 TGTAAGACCATGTCTGA-GACATGGCATC
30001426 AGCATTATAC
Statistics
Matches: 102, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
46 5 0.05
47 31 0.30
48 6 0.06
49 32 0.31
50 27 0.26
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGATGAGCCAG
Found at i:30003641 original size:14 final size:15
Alignment explanation
Indices: 30003608--30003649 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
30003598 TTGACACCAA
30003608 AATTCAAATACTTAAAC
1 AATTCAAA-A-TTAAAC
30003625 AATTCAAAATT-AAC
1 AATTCAAAATTAAAC
30003639 AATTCAAAATT
1 AATTCAAAATT
30003650 TAAAGCTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.56
15 2 0.08
16 1 0.04
17 8 0.32
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
AATTCAAAATTAAAC
Found at i:30006332 original size:35 final size:35
Alignment explanation
Indices: 30006282--30006351 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
30006272 AGAAAGTTTG
*
30006282 AAAGTCATTACGGCTAATTATCGGTGTAATTACCC
1 AAAGTCATTACGGCTAATTATCGATGTAATTACCC
*
30006317 AAAGTCATTATGGCTAATTATCGATGTAATTACCC
1 AAAGTCATTACGGCTAATTATCGATGTAATTACCC
30006352 TAATTCTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (35 bp):
AAAGTCATTACGGCTAATTATCGATGTAATTACCC
Found at i:30018069 original size:17 final size:18
Alignment explanation
Indices: 30018047--30018083 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
30018037 GTTAAATAAC
*
30018047 AATAAATTATATAA-ATA
1 AATAAATAATATAATATA
30018064 AATAAATAATATAATATA
1 AATAAATAATATAATATA
30018082 AA
1 AA
30018084 ATGAAGCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATAATATAATATA
Found at i:30018254 original size:36 final size:36
Alignment explanation
Indices: 30018207--30018280 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
30018197 TTATTGCTAA
30018207 ATTATTGGTTCCAATTTTAAAAACACATAATTATAC
1 ATTATTGGTTCCAATTTTAAAAACACATAATTATAC
30018243 ATTATTGGTTCCAATTTTAAAAACACATAATTATAC
1 ATTATTGGTTCCAATTTTAAAAACACATAATTATAC
30018279 AT
1 AT
30018281 GCAAATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (36 bp):
ATTATTGGTTCCAATTTTAAAAACACATAATTATAC
Found at i:30023150 original size:21 final size:22
Alignment explanation
Indices: 30023123--30023172 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
30023113 AATATAAAAG
*
30023123 TAATTTTAT-ATTAATATTTATA
1 TAATTTTATAATTAA-ATTTAAA
30023145 T-ATTTTATAATTAAATTTAAA
1 TAATTTTATAATTAAATTTAAA
30023166 TAATTTT
1 TAATTTT
30023173 TATCATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TAATTTTATAATTAAATTTAAA
Found at i:30025465 original size:196 final size:196
Alignment explanation
Indices: 30025129--30025514 Score: 544
Period size: 196 Copynumber: 2.0 Consensus size: 196
30025119 GTCTTTTGAC
* * * *
30025129 CTCTCATTAAAACTAAATCACCACGAGACACCTTAATGCTGTTTGACTCGATGTTGATTCCACAA
1 CTCTCATCAAAACTAAAGCACCACGAGACACCTTAACGCTATTTGACTCGATGTTGATTCCACAA
**
30025194 CCCTTCAAGTTTAAATTTCCTAAGGAAATGAGGTTTTTCTTTAAATCAGTCACATGTCTAACATC
66 CCCTTCAAGTCAAAATTTCCTAAGGAAATGAGGTTTTTCTTTAAATCAGTCACATGTCTAACATC
* * * * * *
30025259 TGACAAAGTTCTAATAATTCTATCC-TGCATTCTGATTTGAATGGTGCCCATACCAATTATTTCA
131 TGAAAAAGTTCTAATAATTCT-GCCATGCATTCTAATCTAAACGGTGCCCATACCAATTATTTCA
30025323 AG
195 AG
* *
30025325 CTCTCATCAAAACTAAAGCACCACGAGATACCTTAACG-TCATTTGACTCGATGTTGATTCTACA
1 CTCTCATCAAAACTAAAGCACCACGAGACACCTTAACGCT-ATTTGACTCGATGTTGATTCCACA
** * * * *
30025389 ACCCTTTGAGTCAAAATTTCCTAGGGAGATGATGTTTTTCTTTAAATCTA-TCACATGTCTGACA
65 ACCCTTCAAGTCAAAATTTCCTAAGGAAATGAGGTTTTTCTTTAAATC-AGTCACATGTCTAACA
30025453 TCTGAAAAAGTTCTAATAATTCTGCCATGCATTCTAATCTAAACGGTGCCCATACCAATTAT
129 TCTGAAAAAGTTCTAATAATTCTGCCATGCATTCTAATCTAAACGGTGCCCATACCAATTAT
30025515 CTTACAAGGT
Statistics
Matches: 167, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
195 3 0.02
196 163 0.98
197 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (196 bp):
CTCTCATCAAAACTAAAGCACCACGAGACACCTTAACGCTATTTGACTCGATGTTGATTCCACAA
CCCTTCAAGTCAAAATTTCCTAAGGAAATGAGGTTTTTCTTTAAATCAGTCACATGTCTAACATC
TGAAAAAGTTCTAATAATTCTGCCATGCATTCTAATCTAAACGGTGCCCATACCAATTATTTCAA
G
Found at i:30025948 original size:30 final size:30
Alignment explanation
Indices: 30025914--30026011 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
30025904 AGCTCACTCC
30025914 TAGCTCATATTCAGCTTACGAGCTAAACCT
1 TAGCTCATATTCAGCTTACGAGCTAAACCT
** * * * *
30025944 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTTACGAGCTAAACCT
* * * *
30025974 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTTACGAGCTAAACCT
30026004 TAGCTCAT
1 TAGCTCAT
30026012 TTTAGTTTAA
Statistics
Matches: 51, Mismatches: 15, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (30 bp):
TAGCTCATATTCAGCTTACGAGCTAAACCT
Found at i:30028606 original size:21 final size:20
Alignment explanation
Indices: 30028576--30028643 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
30028566 ACATTCTTGT
*
30028576 AAAGAGAAAGCAAAGAAAAGA
1 AAAGAAAAAGCAAA-AAAAGA
*
30028597 AAAGAAAAAGCAAAAGAAGA
1 AAAGAAAAAGCAAAAAAAGA
* *
30028617 AAATGAAAACGAAATAAAAAGA
1 AAA-GAAAAAGCAA-AAAAAGA
30028639 AAAGA
1 AAAGA
30028644 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 8 0.20
21 23 0.57
22 9 0.22
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:30028611 original size:6 final size:5
Alignment explanation
Indices: 30028576--30028643 Score: 52
Period size: 5 Copynumber: 13.0 Consensus size: 5
30028566 ACATTCTTGT
*
30028576 AAAGA GAAAGC AAAGA AAAGA AAAGAA AAAGCA AAAG- -AAGA AAATGA
1 AAAGA -AAAGA AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAA-GA
30028623 AAACGA AATA-A AAAGA AAAGA
1 AAA-GA AA-AGA AAAGA AAAGA
30028644 GAGGCAAGAG
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.06
4 1 0.02
5 24 0.46
6 23 0.44
7 1 0.02
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:30028722 original size:11 final size:12
Alignment explanation
Indices: 30028691--30028721 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30028681 TTGAGAGAAC
30028691 TTGAAAAAGCCT
1 TTGAAAAAGCCT
*
30028703 TTGAAAAAGTCT
1 TTGAAAAAGCCT
30028715 TTGAAAA
1 TTGAAAA
30028722 GCAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:30028758 original size:30 final size:30
Alignment explanation
Indices: 30028724--30028805 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
30028714 TTTGAAAAGC
*
30028724 AAAAAGAAAATGTAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATG-AAAAGAAATATGAGAGTG
* * *
30028754 AAAAAGAGAACGAAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAGAAATATGAGAGTG
*
30028784 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATG-AAAAGAAAT
30028806 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.63, C:0.01, G:0.22, T:0.13
Consensus pattern (30 bp):
AAAAAGAAAATGAAAAGAAATATGAGAGTG
Found at i:30033145 original size:49 final size:48
Alignment explanation
Indices: 30033079--30033250 Score: 159
Period size: 49 Copynumber: 3.5 Consensus size: 48
30033069 GTTGTGTGTT
*
30033079 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCC
* * * **
30033128 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGCC
* * * * * * **
30033177 AGTGTAAGACCTGTCTAGAACATGCCATTGACTTCAAT-G-TGTTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCC
*
30033224 AGTGTAAGACCATGTTTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
30033251 GTCGGCATCT
Statistics
Matches: 97, Mismatches: 23, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
47 15 0.15
48 12 0.12
49 70 0.72
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCC
Found at i:30046357 original size:16 final size:15
Alignment explanation
Indices: 30046336--30046383 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
30046326 GATGTGAATA
30046336 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
30046352 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
30046367 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
30046383 A
1 A
30046384 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:30046366 original size:8 final size:8
Alignment explanation
Indices: 30046332--30046383 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
30046322 CAATGATGTG
*
30046332 AATAATAA
1 AATATTAA
30046340 AATATATAA
1 AATAT-TAA
30046349 AATA-TAA
1 AATATTAA
30046356 AATATTAA
1 AATATTAA
*
30046364 AATATCAA
1 AATATTAA
*
30046372 AATATTAG
1 AATATTAA
30046380 AATA
1 AATA
30046384 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:30046383 original size:24 final size:24
Alignment explanation
Indices: 30046331--30046387 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
30046321 ACAATGATGT
*
30046331 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
30046355 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
30046379 GAATAATAA
1 GAATAATAA
30046388 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:30046565 original size:25 final size:25
Alignment explanation
Indices: 30046537--30046585 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
30046527 CGTGATAATA
**
30046537 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
*
30046562 TTAAAAATACATATATAATATAGT
1 TTAAAAATACATACATAATATAGT
30046586 TAAGATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:30046651 original size:27 final size:25
Alignment explanation
Indices: 30046616--30046677 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
30046606 ACATGTAGAA
*
30046616 AAAAAATATATAAATAATATAATAT
1 AAAAGATATATAAATAATATAATAT
* * *
30046641 TAAAGATATATAAATAAAATAGTAT
1 AAAAGATATATAAATAATATAATAT
*
30046666 AAAATATATATA
1 AAAAGATATATA
30046678 TACGTAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (25 bp):
AAAAGATATATAAATAATATAATAT
Found at i:30046658 original size:14 final size:13
Alignment explanation
Indices: 30046618--30046668 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
30046608 ATGTAGAAAA
30046618 AAAATATATAAAT
1 AAAATATATAAAT
* *
30046631 AATATA-AT-ATT
1 AAAATATATAAAT
30046642 AAAGATATATAAAT
1 AAA-ATATATAAAT
30046656 AAAATAGTATAAA
1 AAAATA-TATAAA
30046669 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 5 0.17
13 10 0.33
14 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:30046678 original size:27 final size:27
Alignment explanation
Indices: 30046551--30046689 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 27
30046541 AAATATGTAC
* *
30046551 ATAATATAGTGTTAAAA-ATACATAT--
1 ATAATATAGT-ATAAAATATATATATAA
* *
30046576 ATAATATAGT-TAAGATATATACATAA
1 ATAATATAGTATAAAATATATATATAA
* * * *
30046602 GATAACAT-GTAGAAAAAAAATATATAA
1 -ATAATATAGTATAAAATATATATATAA
* * *
30046629 ATAATATAATAT-TAA-AGATATATAA
1 ATAATATAGTATAAAATATATATATAA
* *
30046654 ATAAAATAGTATAAAATATATATATAC
1 ATAATATAGTATAAAATATATATATAA
*
30046681 GTAATATAG
1 ATAATATAG
30046690 AATTTAAAAT
Statistics
Matches: 85, Mismatches: 21, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
23 4 0.05
24 6 0.07
25 29 0.34
26 12 0.14
27 34 0.40
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (27 bp):
ATAATATAGTATAAAATATATATATAA
Found at i:30047283 original size:30 final size:30
Alignment explanation
Indices: 30047247--30047330 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 30
30047237 CAAGTGGTGG
30047247 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
* * * **
30047277 TGGAGCAATTGT-GTCTAGTGGATTTGGTGG
1 TGGAGCAAGTGTGGT-TAGTGGAGTAGGTAA
*
30047307 TGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGAGCAA-GTGTGGTTAGTGGAGT
30047331 TGGTGGTGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.09
30 38 0.88
31 1 0.02
ACGTcount: A:0.21, C:0.05, G:0.44, T:0.30
Consensus pattern (30 bp):
TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
Found at i:30047334 original size:30 final size:30
Alignment explanation
Indices: 30047286--30047405 Score: 204
Period size: 30 Copynumber: 4.0 Consensus size: 30
30047276 ATGGAGCAAT
* * *
30047286 TGTGTCTAGTGGATTTGGTGGTGGAGAAGG
1 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
30047316 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
*
30047346 AGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
30047376 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
30047406 CTAAGATTTA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.20, C:0.03, G:0.49, T:0.28
Consensus pattern (30 bp):
TGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
Found at i:30048212 original size:101 final size:101
Alignment explanation
Indices: 30048088--30048271 Score: 228
Period size: 101 Copynumber: 1.8 Consensus size: 101
30048078 AATTGACTCT
* * * *
30048088 TTAAAAAAATAGACATTAAAACAGAAATTAAAAATAGCTCAGCACATGAGCCAAGGCTCAACTCA
1 TTAAAAAAATAGACATTAAAACAGAAATTAAAAAGACCTCAGCACATGACCCAAGACTCAACTCA
30048153 CCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAA
66 CCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAA
* * ** *** *
30048189 TTAAAAAAA-AGA-ATTTAAAAACAGAATTTGAAAAGACCTTGGCGTGTGACCCGAGACTCAACT
1 TTAAAAAAATAGACA-TT-AAAACAGAAATTAAAAAGACCTCAGCACATGACCCAAGACTCAACT
30048252 CACCTCTCGCAATATGAGTT
64 CACCTCTCGCAATATGAGTT
30048272 GATTCTTAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
99 1 0.01
100 5 0.07
101 63 0.91
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (101 bp):
TTAAAAAAATAGACATTAAAACAGAAATTAAAAAGACCTCAGCACATGACCCAAGACTCAACTCA
CCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAA
Found at i:30048222 original size:14 final size:13
Alignment explanation
Indices: 30048174--30048222 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
30048164 ATGAGTTTTT
30048174 TTTAAAACACAGAAA
1 TTTAAAA-ACAG-AA
* *
30048189 TTAAAAAAAAGAA
1 TTTAAAAACAGAA
30048202 TTTAAAAACAGAA
1 TTTAAAAACAGAA
*
30048215 TTTGAAAA
1 TTTAAAAA
30048223 GACCTTGGCG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
13 20 0.69
14 3 0.10
15 6 0.21
ACGTcount: A:0.63, C:0.06, G:0.08, T:0.22
Consensus pattern (13 bp):
TTTAAAAACAGAA
Found at i:30048299 original size:14 final size:14
Alignment explanation
Indices: 30048280--30048311 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
30048270 TTGATTCTTA
30048280 AAAAGCATAAATTG
1 AAAAGCATAAATTG
30048294 AAAAGCATAAATTG
1 AAAAGCATAAATTG
30048308 AAAA
1 AAAA
30048312 TACCTCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
AAAAGCATAAATTG
Found at i:30048414 original size:192 final size:188
Alignment explanation
Indices: 30048141--30048489 Score: 563
Period size: 192 Copynumber: 1.8 Consensus size: 188
30048131 ACATGAGCCA
*
30048141 AGGCTCAACTCACCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAATTAAAAAAAAGAATTTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAATTAAAAAAAAGAAATTA
*
30048206 AAAACAGAATTTGAAAAGACCTTGGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGT
66 AAAACAGAATTTGAAAAGACCTCGGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGT
*
30048271 TGATTCTTAAAAAGCATAAATTGAAAAGCATAAATTGAAAATACCTCAATGTGCCCTG
131 TGATTCTTAAAAAGCAGAAATTGAAAAGCATAAATTGAAAATACCTCAATGTGCCCTG
* * *
30048329 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAACACAGAAATTTAAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAG-T--TTTTTTTAAAACACAGAAA-TTAAAAAAAAGAA
* *
30048394 ATTAAAGACAGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
62 ATTAAAAACAGAATTTGAAAAGACCTCGGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATAT
* * *
30048459 GAGTTGATTTTTGAAAAGTAGAAATTGAAAA
127 GAGTTGATTCTTAAAAAGCAGAAATTGAAAA
30048490 CGCCTCAGCG
Statistics
Matches: 146, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 27 0.18
189 1 0.01
191 18 0.12
192 100 0.68
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.26
Consensus pattern (188 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTTTTTTTAAAACACAGAAATTAAAAAAAAGAAATTA
AAAACAGAATTTGAAAAGACCTCGGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGT
TGATTCTTAAAAAGCAGAAATTGAAAAGCATAAATTGAAAATACCTCAATGTGCCCTG
Found at i:30048531 original size:75 final size:74
Alignment explanation
Indices: 30048403--30048694 Score: 282
Period size: 75 Copynumber: 3.8 Consensus size: 74
30048393 AATTAAAGAC
* * * *
30048403 AGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA-T
1 AGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
30048467 TTTTGAAAAGT
64 TTTTGAAAAGT
** * *
30048478 AGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTTAACTCACCTCTTGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
30048543 CTTTTGAAAAATCT
64 -TTTTG-AAAA-GT
* * * *
30048557 AAAAAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGTAATATGAGTTGAT
1 ---AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
30048622 TTTTTG-AAAGAC
63 TTTTTGAAAAG-T
* ** * * * *
30048634 AGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACTTCTTGCAGTATGAGTTGA
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
30048695 ATTATGAAAC
Statistics
Matches: 179, Mismatches: 30, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
74 50 0.28
75 55 0.31
76 1 0.01
77 8 0.04
78 4 0.02
79 6 0.03
80 34 0.19
82 21 0.12
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (74 bp):
AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGAAAAGT
Found at i:30060391 original size:16 final size:15
Alignment explanation
Indices: 30060370--30060417 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
30060360 TATGTGAATA
30060370 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
30060386 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
30060401 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
30060417 A
1 A
30060418 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:30060400 original size:8 final size:8
Alignment explanation
Indices: 30060366--30060417 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
30060356 CAATTATGTG
*
30060366 AATAATAA
1 AATATTAA
30060374 AATATATAA
1 AATAT-TAA
30060383 AATA-TAA
1 AATATTAA
30060390 AATATTAA
1 AATATTAA
*
30060398 AATATCAA
1 AATATTAA
*
30060406 AATATTAG
1 AATATTAA
30060414 AATA
1 AATA
30060418 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:30060417 original size:24 final size:24
Alignment explanation
Indices: 30060365--30060421 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
30060355 ACAATTATGT
*
30060365 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
30060389 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
30060413 GAATAATAA
1 GAATAATAA
30060422 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:30060599 original size:25 final size:25
Alignment explanation
Indices: 30060571--30060619 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
30060561 CGTGATAATA
**
30060571 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
*
30060596 TTAAAAATACATATATAATATAGT
1 TTAAAAATACATACATAATATAGT
30060620 TAAGATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:30060684 original size:25 final size:25
Alignment explanation
Indices: 30060655--30060788 Score: 86
Period size: 25 Copynumber: 5.6 Consensus size: 25
30060645 TAGAAAAAAT
30060655 ATATATATATAATATAATATTAAAG
1 ATATATATATAATATAATATTAAAG
* * * * *
30060680 ATATATAAATAAAATAGTATAAAAT
1 ATATATATATAATATAATATTAAAG
*
30060705 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATATA--TAATATA-ATATTAAAG
** * *
30060731 A-ATATACCTAATGT-AT-TAAAAG
1 ATATATATATAATATAATATTAAAG
30060753 A-ATATATATAATATAATATT-AAG
1 ATATATATATAATATAATATTAAAG
*
30060776 AAATATA-ATAATA
1 ATATATATATAATA
30060789 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
21 4 0.05
22 11 0.13
23 17 0.21
24 6 0.07
25 33 0.40
26 1 0.01
27 10 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATATATAATATAATATTAAAG
Found at i:30061345 original size:30 final size:31
Alignment explanation
Indices: 30061275--30061439 Score: 180
Period size: 30 Copynumber: 5.5 Consensus size: 31
30061265 TAGGTACAAG
* *
30061275 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* ** * *
30061305 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* * *
30061335 TGGTGGTGGAG-AATGTGTAGCTAGTGGATT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* *
30061365 TGGTGGTGGA-AAAGGAGTGGCTAGTAGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
30061395 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
30061425 TGGTGGTGGA-AAAGG
1 TGGTGGTGGAGAAAGG
30061440 CTAAGATTTA
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.02
30 115 0.98
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (31 bp):
TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
Found at i:30066590 original size:38 final size:38
Alignment explanation
Indices: 30066539--30066696 Score: 172
Period size: 38 Copynumber: 3.9 Consensus size: 38
30066529 ATTCATTAAT
30066539 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* *
30066577 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
* *
30066624 ATGGTGCTAAGTGGATATACCACGATTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* * *
30066662 GTGCTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
30066697 TAATTTGAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
38 61 0.61
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 29 0.29
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
Found at i:30066629 original size:85 final size:85
Alignment explanation
Indices: 30066483--30066689 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
30066473 ACATATTGAT
* **
30066483 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
*
30066548 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGATTAA
30066568 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
30066633 AGTGGATATACCACGATTAA
66 AGTGGATATACCACGATTAA
*
30066653 ACATGTAACGTGCTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
30066690 TACATGTTAA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
AGTGGATATACCACGATTAA
Found at i:30068473 original size:21 final size:20
Alignment explanation
Indices: 30068426--30068473 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
30068416 TTTTGATCAT
30068426 ATTATTAAATTAACTTTAAA
1 ATTATTAAATTAACTTTAAA
* *
30068446 ATAATTATAATTTAA-TTTAGA
1 ATTATTA-AA-TTAACTTTAAA
30068467 ATTATTA
1 ATTATTA
30068474 GTTGAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTATTAAATTAACTTTAAA
Found at i:30070892 original size:40 final size:40
Alignment explanation
Indices: 30070837--30071060 Score: 299
Period size: 40 Copynumber: 5.5 Consensus size: 40
30070827 TATTCGGATG
30070837 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACT
*
30070877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTACT
* *
30070920 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
** *
30070960 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* * * *
30071000 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
30071040 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
30071061 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 12 0.07
40 113 0.69
43 37 0.23
44 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:30070980 original size:83 final size:80
Alignment explanation
Indices: 30070841--30071060 Score: 286
Period size: 83 Copynumber: 2.7 Consensus size: 80
30070831 CGGATGATAT
* *
30070841 CCGGGCTAAGTCCCGAAGGCATTTGTG-TAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGTCCCGAAGGCATTC
*
30070905 GTGCGAGTAGTTG-CTATAC
65 ATGC---TAG-TGACTATAC
30070924 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
30070989 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
30071004 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAG
30071061 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 63 0.50
84 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:30078430 original size:14 final size:12
Alignment explanation
Indices: 30078401--30078439 Score: 60
Period size: 12 Copynumber: 3.1 Consensus size: 12
30078391 AAATTGAAAG
30078401 TTTTGTTTTTTT
1 TTTTGTTTTTTT
30078413 TTTTGTTTTTTT
1 TTTTGTTTTTTT
30078425 GCTTTTGTTTTTTT
1 --TTTTGTTTTTTT
30078439 T
1 T
30078440 GCGAATAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.52
14 12 0.48
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:30084816 original size:41 final size:42
Alignment explanation
Indices: 30084770--30085113 Score: 316
Period size: 41 Copynumber: 8.4 Consensus size: 42
30084760 AAAGAATGAG
*
30084770 AAATAGCGGTGTTTTTATCTAAAACGCCACTAAAAA-TAGAT
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* * *
30084811 AAATAGCGGTGTTTTTGTCTAAAATGCCACTAAAAAC-AGAT
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* * * **
30084852 TAATAGCGGTGTTTTTAAT-T-AAACGCCACTAAAAACTGGGG
1 AAATAGCGGCGTTTTT-ATCTAAAACGCCACTAAAAACTAGAT
** *
30084893 AAATAGCGGCGTTTTTATCCCAAATGCCACT-AAAACTA-AT
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* * *
30084933 CAATAGCGGCGTTTTTTATCTAAAATGCCA-TGAAAAACTAGAG
1 AAATAGCGGCG-TTTTTATCTAAAACGCCACT-AAAAACTAGAT
* *
30084976 AAATAGCGGCGTTTTTGTC-CAAACGCCACTAAAAACT-GAT
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* * * * * *
30085016 CAATAGCGACATTTTTATCCAAAACGCCACTAAAAACTGGAG
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* * * *
30085058 AAAAAGCGGCGTTTTTGTC-CAAACACCACT-AAAACT-GAT
1 AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
* *
30085097 CAATAGTGGCGTTTTTA
1 AAATAGCGGCGTTTTTA
30085114 GGCCCAAACG
Statistics
Matches: 249, Mismatches: 42, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
39 15 0.06
40 51 0.20
41 131 0.53
42 41 0.16
43 11 0.04
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (42 bp):
AAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAT
Found at i:30084857 original size:82 final size:82
Alignment explanation
Indices: 30084771--30085113 Score: 394
Period size: 82 Copynumber: 4.2 Consensus size: 82
30084761 AAGAATGAGA
* * * *
30084771 AATAGCGGTGTTTTTATCTAAAACGCCACTAAAAA-TAGATAAATAGCGGTGTTTTTGTCTAAAA
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTC-CAAA
*
30084835 TGCCACTAAAAACAGATT
65 TGCCACTAAAAACAGATC
* * * *
30084853 AATAGCGGTGTTTTTAAT-T-AAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTATCCCAA
1 AATAGCGGCGTTTTT-ATCTAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGT-CCAA
30084916 ATGCCACT-AAAACTA-ATC
64 ATGCCACTAAAAAC-AGATC
*
30084934 AATAGCGGCGTTTTTTATCTAAAATGCCA-TGAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAA
1 AATAGCGGCG-TTTTTATCTAAAACGCCACT-AAAAACTAGAGAAATAGCGGCGTTTTTGTCCAA
* *
30084998 ACGCCACTAAAAACTGATC
64 ATGCCACTAAAAACAGATC
* * * * * *
30085017 AATAGCGACATTTTTATCCAAAACGCCACTAAAAACTGGAGAAAAAGCGGCGTTTTTGTCCAAAC
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAAAT
* *
30085082 ACCACT-AAAACTGATC
66 GCCACTAAAAACAGATC
*
30085098 AATAGTGGCGTTTTTA
1 AATAGCGGCGTTTTTA
30085114 GGCCCAAACG
Statistics
Matches: 226, Mismatches: 24, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
81 56 0.25
82 117 0.52
83 53 0.23
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (82 bp):
AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAAAT
GCCACTAAAAACAGATC
Found at i:30084955 original size:123 final size:123
Alignment explanation
Indices: 30084766--30085073 Score: 354
Period size: 123 Copynumber: 2.5 Consensus size: 123
30084756 CGCAAAAGAA
* * * *
30084766 TGAGAAATAGCGGTGTTTTTATCTAAAACGCCACTAAAAATAGATAAATAGCGGTGTTTTTGTCT
1 TGAGAAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAATAGATAAATAGCGGCGTTTTTATCT
** * *
30084831 AAAATGCCACT-AAAAAC-AGATTAATAGCGGTGTTTTTAAT-TAAACGCCACTAAAAAC
66 AAAATGCCA-TGAAAAACTAGAGAAATAGCGGCGTTTTT-ATCCAAACGCCACTAAAAAC
* * * * *
30084888 TGGGGAAATAGCGGCGTTTTTATCCCAAATGCCACTAAAACTA-ATCAATAGCGGCGTTTTTTAT
1 T-GAGAAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAATAGATAAATAGCGGCG-TTTTTAT
*
30084952 CTAAAATGCCATGAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAAACGCCACTAAAAAC
64 CTAAAATGCCATGAAAAACTAGAGAAATAGCGGCGTTTTTATCCAAACGCCACTAAAAAC
** * * * * *
30085012 TGATCAATAGCGACATTTTTATCCAAAACGCCACTAAAAACTGGAGAAAAAGCGGCGTTTTT
1 TGAGAAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAA-TAGATAAATAGCGGCGTTTTT
30085074 GTCCAAACAC
Statistics
Matches: 153, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
122 13 0.08
123 90 0.59
124 40 0.26
125 10 0.07
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (123 bp):
TGAGAAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAATAGATAAATAGCGGCGTTTTTATCT
AAAATGCCATGAAAAACTAGAGAAATAGCGGCGTTTTTATCCAAACGCCACTAAAAAC
Found at i:30085661 original size:21 final size:21
Alignment explanation
Indices: 30085624--30085663 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
30085614 TAAGTTTATA
*
30085624 GTTTGGGGTTTGTTATTTTGG
1 GTTTGGGGTTAGTTATTTTGG
30085645 GTTTGGGGTATAG-TATTTT
1 GTTTGGGGT-TAGTTATTTT
30085664 AAATTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (21 bp):
GTTTGGGGTTAGTTATTTTGG
Found at i:30085726 original size:15 final size:15
Alignment explanation
Indices: 30085703--30085762 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
30085693 TTGAAAGTGT
30085703 TTAGGGTTTAGGGTA
1 TTAGGGTTTAGGGTA
* * *
30085718 TTAGTGTTTAAGGTT
1 TTAGGGTTTAGGGTA
30085733 TTAAGGG-TTAGGGTA
1 TT-AGGGTTTAGGGTA
30085748 TTAGGGTTTAAGGGT
1 TTAGGGTTT-AGGGT
30085763 TAGTTGATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
14 4 0.11
15 24 0.67
16 8 0.22
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.42
Consensus pattern (15 bp):
TTAGGGTTTAGGGTA
Found at i:30085743 original size:22 final size:22
Alignment explanation
Indices: 30085698--30085766 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
30085688 GGTGTTTGAA
30085698 AGTGT-TTAGGGTTT-AGGGTATT
1 AGTGTATTAGGGTTTAAGGG--TT
*
30085720 AGTGT-TTAAGGTTTTAAGGGTT
1 AGTGTATT-AGGGTTTAAGGGTT
*
30085742 AGGGTATTAGGGTTTAAGGGTT
1 AGTGTATTAGGGTTTAAGGGTT
30085764 AGT
1 AGT
30085767 TGATTAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 28 0.70
23 8 0.20
24 4 0.10
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (22 bp):
AGTGTATTAGGGTTTAAGGGTT
Found at i:30085751 original size:8 final size:7
Alignment explanation
Indices: 30085701--30085763 Score: 56
Period size: 8 Copynumber: 8.4 Consensus size: 7
30085691 GTTTGAAAGT
30085701 GTTTAGG
1 GTTTAGG
30085708 GTTTAGG
1 GTTTAGG
*
30085715 GTATTAGT
1 GT-TTAGG
30085723 GTTTAAGG
1 GTTT-AGG
*
30085731 TTTTAAGG
1 GTTT-AGG
30085739 G-TTAGG
1 GTTTAGG
30085745 GTATTAGG
1 GT-TTAGG
30085753 GTTTAAGG
1 GTTT-AGG
30085761 GTT
1 GTT
30085764 AGTTGATTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
6 4 0.09
7 15 0.32
8 28 0.60
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:30086831 original size:17 final size:17
Alignment explanation
Indices: 30086811--30086857 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
30086801 AAACCCTTAT
30086811 TTTCCCCTAAATTAAAA
1 TTTCCCCTAAATTAAAA
* *
30086828 TTTCCCTTAAACCTTAAAT
1 TTTCCCCTAAA--TTAAAA
30086847 TTTCCCC-AAAT
1 TTTCCCCTAAAT
30086858 CAAACCCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 1 0.04
17 10 0.40
18 3 0.12
19 11 0.44
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTCCCCTAAATTAAAA
Found at i:30086850 original size:19 final size:17
Alignment explanation
Indices: 30086809--30086857 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
30086799 CGAAACCCTT
30086809 ATTTTCCCCTAAATTAA
1 ATTTTCCCCTAAATTAA
* *
30086826 AATTTCCCTTAAACCTTAA
1 ATTTTCCCCTAAA--TTAA
30086845 ATTTTCCCC-AAAT
1 ATTTTCCCCTAAAT
30086858 CAAACCCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
16 1 0.04
17 11 0.42
18 3 0.12
19 11 0.42
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTTCCCCTAAATTAA
Found at i:30087290 original size:8 final size:8
Alignment explanation
Indices: 30087279--30087305 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
30087269 ATGTTTGGGT
30087279 TTTTGAAA
1 TTTTGAAA
30087287 TTTTGAAA
1 TTTTGAAA
30087295 TTTTGAAA
1 TTTTGAAA
30087303 TTT
1 TTT
30087306 GATTTAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (8 bp):
TTTTGAAA
Found at i:30089235 original size:25 final size:25
Alignment explanation
Indices: 30089207--30089281 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 25
30089197 TCCGCATCGT
* * *
30089207 CGTTGGCAGCCCTATGCTGCATCTC
1 CGTTGGCATCCCTCTGCTACATCTC
30089232 CGTTGGCATCCCTCTGCTACATCTC
1 CGTTGGCATCCCTCTGCTACATCTC
* *
30089257 CGTCGGCATCCCTCTGCTACTTCTC
1 CGTTGGCATCCCTCTGCTACATCTC
30089282 TAGTTTTCTG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.11, C:0.40, G:0.19, T:0.31
Consensus pattern (25 bp):
CGTTGGCATCCCTCTGCTACATCTC
Found at i:30090539 original size:9 final size:9
Alignment explanation
Indices: 30090525--30090828 Score: 116
Period size: 9 Copynumber: 34.1 Consensus size: 9
30090515 TATTATTTAA
30090525 TACATAACT
1 TACATAACT
*
30090534 TACATAATT
1 TACATAACT
30090543 TACATAACT
1 TACATAACT
30090552 TACATAA--
1 TACATAACT
30090559 TACATAACT
1 TACATAACT
*
30090568 TACATAATT
1 TACATAACT
* *
30090577 TAAAGATCAAAT
1 T--ACAT-AACT
**
30090589 TTTATAACT
1 TACATAACT
30090598 TACATAA-T
1 TACATAACT
***
30090606 TTTGTAACT
1 TACATAACT
30090615 TACATAA--
1 TACATAACT
* *
30090622 TACATGAGT
1 TACATAACT
*
30090631 TACATAATT
1 TACATAACT
* *
30090640 TAAAGATCAAAT
1 T--ACAT-AACT
* * *
30090652 TTCAAAATT
1 TACATAACT
30090661 TACATAA--
1 TACATAACT
30090668 TACATAACT
1 TACATAACT
30090677 TACATAA--
1 TACATAACT
30090684 TACATAACT
1 TACATAACT
*
30090693 TACATAATT
1 TACATAACT
* *
30090702 TAAAGATCAAAT
1 T--ACAT-AACT
*
30090714 TTCATAACT
1 TACATAACT
*
30090723 TAGATAA--
1 TACATAACT
30090730 TACATAACT
1 TACATAACT
* *
30090739 TATATAATT
1 TACATAACT
* *
30090748 TAAAGATCAAAT
1 T--ACAT-AACT
*
30090760 TTCATAACT
1 TACATAACT
*
30090769 TACATAATT
1 TACATAACT
30090778 TACATAACT
1 TACATAACT
30090787 TACATAA--
1 TACATAACT
* *
30090794 TAAATATCT
1 TACATAACT
30090803 TACATAA--
1 TACATAACT
*
30090810 TACATGACT
1 TACATAACT
30090819 TACATAACT
1 TACATAACT
30090828 T
1 T
30090829 TATTATACTT
Statistics
Matches: 216, Mismatches: 52, Indels: 54
0.67 0.16 0.17
Matches are distributed among these distances:
7 44 0.20
8 5 0.02
9 132 0.61
10 7 0.03
11 12 0.06
12 16 0.07
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (9 bp):
TACATAACT
Found at i:30090564 original size:16 final size:16
Alignment explanation
Indices: 30090522--30090825 Score: 146
Period size: 16 Copynumber: 19.2 Consensus size: 16
30090512 AAATATTATT
30090522 TAATACATAACTTACA
1 TAATACATAACTTACA
30090538 TAATTTACATAACTTACA
1 TAA--TACATAACTTACA
30090556 TAATACATAACTTACA
1 TAATACATAACTTACA
** **
30090572 TAATTTA-AAGAT-CA
1 TAATACATAACTTACA
**
30090586 -AATTTTATAACTTACA
1 TAA-TACATAACTTACA
***
30090602 TAATTTTGTAACTTACA
1 TAA-TACATAACTTACA
* *
30090619 TAATACATGAGTTACA
1 TAATACATAACTTACA
** **
30090635 TAATTTA-AAGAT-CA
1 TAATACATAACTTACA
* * *
30090649 -AATTTCAAAATTTACA
1 TAA-TACATAACTTACA
30090665 TAATACATAACTTACA
1 TAATACATAACTTACA
30090681 TAATACATAACTTACA
1 TAATACATAACTTACA
** **
30090697 TAATTTA-AAGAT-CA
1 TAATACATAACTTACA
* *
30090711 -AATTTCATAACTTAGA
1 TAA-TACATAACTTACA
*
30090727 TAATACATAACTTATA
1 TAATACATAACTTACA
** **
30090743 TAATTTA-AAGAT-CA
1 TAATACATAACTTACA
*
30090757 -AATTTCATAACTTACA
1 TAA-TACATAACTTACA
30090773 TAATTTACATAACTTACA
1 TAA--TACATAACTTACA
* *
30090791 TAATAAATATCTTACA
1 TAATACATAACTTACA
*
30090807 TAATACATGACTTACA
1 TAATACATAACTTACA
30090823 TAA
1 TAA
30090826 CTTTATTATA
Statistics
Matches: 223, Mismatches: 46, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
13 8 0.04
14 20 0.09
15 24 0.11
16 115 0.52
17 24 0.11
18 32 0.14
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (16 bp):
TAATACATAACTTACA
Found at i:30090707 original size:62 final size:63
Alignment explanation
Indices: 30090527--30090830 Score: 332
Period size: 62 Copynumber: 4.8 Consensus size: 63
30090517 TTATTTAATA
30090527 CATAACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAA-TTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *** * *
30090591 TATAACTTACATAATTTTGTAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *
30090654 CAAAATTTACATAA-TACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* * ** ** **
30090716 CATAACTTAGATAA-TACATAACTTATATAATTTA-AAGAT-CA-AATTTCATAACTTACATAAT
1 CATAACTTACATAATTACATAACTTACATAATACATAACTTACATAATTT-A-AAGAT-CA-AAT
30090777 TT
62 TT
* * *
30090779 ACATAACTTACATAA-TAAATATCTTACATAATACATGACTTACATAACTTTA
1 -CATAACTTACATAATTACATAACTTACATAATACATAACTTACATAA-TTTA
30090831 TTATACTTAT
Statistics
Matches: 198, Mismatches: 33, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
59 5 0.03
60 3 0.02
61 6 0.03
62 73 0.37
63 60 0.30
64 41 0.21
65 2 0.01
66 2 0.01
67 3 0.02
68 3 0.02
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (63 bp):
CATAACTTACATAATTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
Found at i:30090720 original size:46 final size:46
Alignment explanation
Indices: 30090670--30090794 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
30090660 TTACATAATA
30090670 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *
30090716 CATAACTTAGATAATACATAACTTATATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
30090762 CATAACTTACATAATTTACATAACTTACATAAT
1 CATAACTTACATAA--TACATAACTTACATAAT
30090795 AAATATCTTA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 57 0.78
48 16 0.22
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.36
Consensus pattern (46 bp):
CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
Found at i:30099799 original size:70 final size:70
Alignment explanation
Indices: 30099712--30099843 Score: 201
Period size: 70 Copynumber: 1.9 Consensus size: 70
30099702 TTTATTACTA
* * * * *
30099712 ATTAATTTGCTGCTGTAATGCTGTAAATTATTGGTTGTCCAAATTAGGACAAATTTATGGTGCTT
1 ATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTGCTT
30099777 TGCTG
66 TGCTG
* *
30099782 ATTAATATGCTGTTGTAATACTGTAAATTATTGGCTGTCTAAATTAGGACAAAATCATGGTG
1 ATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
30099844 TTATGTGCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 55 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (70 bp):
ATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTGCTT
TGCTG
Found at i:30100674 original size:43 final size:43
Alignment explanation
Indices: 30100616--30100786 Score: 218
Period size: 43 Copynumber: 4.0 Consensus size: 43
30100606 TATCGAAATG
* *
30100616 TGATATACGGGCTTCGGGCCTAGCTGGCTATAATGCCGATGAAA
1 TGATAT-CGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
*
30100660 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * * * *
30100703 TAATATCAGGCCTCGGGCCTAGCAAGCTATAATGTCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** * *
30100746 TGATATCGGGCTTCAAGCCTAACAGGCGA-AATGCCGGTGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
30100787 TGAATTCAGA
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 11 0.10
43 92 0.84
44 6 0.06
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Done.