Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 95 of 332
Found at i:30518368 original size:16 final size:15
Alignment explanation
Indices: 30518328--30518368 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
30518318 TTTCAATTTT
30518328 ATTTT-AATAAT-AA
1 ATTTTAAATAATAAA
30518341 ATTTTAAA-AATAAGA
1 ATTTTAAATAATAA-A
30518356 ATTTTAAATAATA
1 ATTTTAAATAATA
30518369 TTCTTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.33
14 3 0.12
15 9 0.38
16 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
ATTTTAAATAATAAA
Found at i:30520446 original size:31 final size:31
Alignment explanation
Indices: 30520404--30520471 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
30520394 AAATTTCAAA
* *
30520404 AAATTATTAAATTATTT-AAAATTTTTCATTT
1 AAATCATTAAATTATTTGAAAATTTTT-ATTC
*
30520435 AAATCATTAAATTATTTGAAAGTTTTTATTC
1 AAATCATTAAATTATTTGAAAATTTTTATTC
30520466 AAATCA
1 AAATCA
30520472 CTGGATGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.49
Consensus pattern (31 bp):
AAATCATTAAATTATTTGAAAATTTTTATTC
Found at i:30524848 original size:39 final size:39
Alignment explanation
Indices: 30524754--30524848 Score: 92
Period size: 39 Copynumber: 2.5 Consensus size: 39
30524744 GATATTTTTG
* *
30524754 ATATAAAAT-ATATATTATATATTATATTAACTTAATAT
1 ATATAATATAATATATAATATATTATATTAACTTAATAT
*
30524792 -T-TAAGTATTAATTTATAATATATTATATT-A-TTATATTAT
1 ATATAA-TA-TAATATATAATATATTATATTAACTTA-A-TAT
30524831 ATATAATATAATATATAA
1 ATATAATATAATATATAA
30524849 AACATAAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
36 3 0.07
37 5 0.11
38 3 0.07
39 29 0.63
40 3 0.07
41 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (39 bp):
ATATAATATAATATATAATATATTATATTAACTTAATAT
Found at i:30525325 original size:17 final size:19
Alignment explanation
Indices: 30525299--30525340 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
30525289 GTAATAATGT
*
30525299 TGTGACAAAA-GT-ATATG
1 TGTGAAAAAATGTGATATG
*
30525316 TGTGAAAAAATGTGATATT
1 TGTGAAAAAATGTGATATG
30525335 TGTGAA
1 TGTGAA
30525341 TTGTGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 2 0.10
19 10 0.48
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.33
Consensus pattern (19 bp):
TGTGAAAAAATGTGATATG
Found at i:30525583 original size:22 final size:22
Alignment explanation
Indices: 30525554--30525610 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
30525544 TAGCACGTTA
30525554 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
30525577 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
30525598 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
30525611 CGTTTGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:30540120 original size:12 final size:12
Alignment explanation
Indices: 30540103--30540164 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
30540093 TATATTACTC
*
30540103 TTTTATTTTTAT
1 TTTTATTATTAT
30540115 TTTTATT-TT-T
1 TTTTATTATTAT
*
30540125 TTCTTGTTACTTA-
1 TT-TTATTA-TTAT
30540138 TTTTATTATTAT
1 TTTTATTATTAT
*
30540150 TATTATTATTAT
1 TTTTATTATTAT
30540162 TTT
1 TTT
30540165 ATACTTTCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
10 3 0.07
11 9 0.22
12 25 0.61
13 4 0.10
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:30540148 original size:3 final size:3
Alignment explanation
Indices: 30540135--30540166 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
30540125 TTCTTGTTAC
30540135 TTA TT- TTA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
30540167 ACTTTCATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:30541610 original size:16 final size:16
Alignment explanation
Indices: 30541591--30541621 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30541581 ATTTTAATAT
*
30541591 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
30541607 TATTTAATATTAAAA
1 TATTTAATATTAAAA
30541622 CAATACACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:30541783 original size:41 final size:41
Alignment explanation
Indices: 30541706--30541916 Score: 228
Period size: 41 Copynumber: 5.2 Consensus size: 41
30541696 AATAGCAGCG
* * * *
30541706 GCTAAAAA-TAGAGCAATAGCGGCATTTTACTG-AAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCACTTT-CGGTAAAACGCC
*
30541746 GCTAAAAACCAGAGCATTAGCTGCACTTTCGGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
* * *
30541787 GCTAAAAACCAGTGCATTAGAGGCGCTTTCGGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
* **
30541828 GCTAAAAACTAGAGCATTAGCGGCACTTTCAATAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
* * * * * * *
30541869 ACTAAATACCAGAGAATTAGCGGCGCTTTTGCTAAAATGCC
1 GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
*
30541910 ACTAAAA
1 GCTAAAA
30541917 GTCATATAAC
Statistics
Matches: 144, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
40 10 0.07
41 134 0.93
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (41 bp):
GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
Found at i:30542241 original size:7 final size:7
Alignment explanation
Indices: 30542220--30542284 Score: 51
Period size: 7 Copynumber: 9.0 Consensus size: 7
30542210 AGGTGTAAAT
*
30542220 GTTTGGG
1 GTTTAGG
*
30542227 GTTAAGG
1 GTTTAGG
30542234 GTTTAGG
1 GTTTAGG
30542241 GTTTAGG
1 GTTTAGG
30542248 GTTTATGG
1 GTTTA-GG
*
30542256 G-ATAGGG
1 GTTTA-GG
*
30542263 GTTAAGAG
1 GTTTAG-G
*
30542271 GTTTAAG
1 GTTTAGG
30542278 GTTTAGG
1 GTTTAGG
30542285 TTAATTAGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
7 36 0.80
8 9 0.20
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (7 bp):
GTTTAGG
Found at i:30545696 original size:29 final size:29
Alignment explanation
Indices: 30545657--30545747 Score: 164
Period size: 29 Copynumber: 3.1 Consensus size: 29
30545647 GAGTCTAGAT
30545657 TTCAGCAATTTTTTAATGTAGTCAATGTTA
1 TTCAG-AATTTTTTAATGTAGTCAATGTTA
30545687 TTCAGAATTTTTTAATGTAGTCAATGTTA
1 TTCAGAATTTTTTAATGTAGTCAATGTTA
*
30545716 TTTAGAATTTTTTAATGTAGTCAATGTTA
1 TTCAGAATTTTTTAATGTAGTCAATGTTA
30545745 TTC
1 TTC
30545748 CGGTATAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
29 54 0.92
30 5 0.08
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (29 bp):
TTCAGAATTTTTTAATGTAGTCAATGTTA
Found at i:30547428 original size:18 final size:18
Alignment explanation
Indices: 30547407--30547445 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
30547397 TTTTCATAAC
*
30547407 TTTTTTAATATTTTATTAT
1 TTTTTTAA-ATTTTATGAT
30547426 TTTTTTAAATTTTATGAT
1 TTTTTTAAATTTTATGAT
30547444 TT
1 TT
30547446 AGCGGCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTTTTAAATTTTATGAT
Found at i:30553758 original size:188 final size:188
Alignment explanation
Indices: 30553430--30553781 Score: 578
Period size: 188 Copynumber: 1.9 Consensus size: 188
30553420 TCGAAATAAT
* *
30553430 AAACTTTAGGTCCAGTTTTGGGGTAAATTTCGATTGGTGCCGTTCATACCAATTGATTTTATCAA
1 AAACTTTAGGTCCAGTTTTGGGGTAAATTTCGATTGGTACCATTCATACCAATTGATTTTATCAA
* * *
30553495 TATTGATTGAAATATGGTGTATCGGTTGGTACCAAAGAAATTGAAAGTGTAGATACTAATATAAT
66 TATTGATTGAAATATGGTCTATCGATTGGTACCAAAGAAATTGAAAGTGTAGATACTAATATAAC
*
30553560 TATATTCAAAATAGAAGTACCATATTAAAAGATTGTTCTGGTAGTAAATCAGAACAAC
131 CATATTCAAAATAGAAGTACCATATTAAAAGATTGTTCTGGTAGTAAATCAGAACAAC
* * * *
30553618 AAACTTTAGGTTCAGTTTTGGTGTAAATTTCGATTGGTACCATTCATACCAATTGATTTTGTCAG
1 AAACTTTAGGTCCAGTTTTGGGGTAAATTTCGATTGGTACCATTCATACCAATTGATTTTATCAA
* *
30553683 TATTGATTGAAATATGGTCTATTGATTGGTACCAAATAAATTGAAAGTGTAGATACTAATATAAC
66 TATTGATTGAAATATGGTCTATCGATTGGTACCAAAGAAATTGAAAGTGTAGATACTAATATAAC
* *
30553748 CATTTTCAAAATAGAAGTACCATATTAAGAGATT
131 CATATTCAAAATAGAAGTACCATATTAAAAGATT
30553782 TCATAACAGA
Statistics
Matches: 150, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
188 150 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (188 bp):
AAACTTTAGGTCCAGTTTTGGGGTAAATTTCGATTGGTACCATTCATACCAATTGATTTTATCAA
TATTGATTGAAATATGGTCTATCGATTGGTACCAAAGAAATTGAAAGTGTAGATACTAATATAAC
CATATTCAAAATAGAAGTACCATATTAAAAGATTGTTCTGGTAGTAAATCAGAACAAC
Found at i:30557657 original size:20 final size:21
Alignment explanation
Indices: 30557616--30557658 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
30557606 AAACAAAAAC
*
30557616 AAAAGAAAAAGTAAAGAAGAA
1 AAAAGAAAAAGTAAAAAAGAA
30557637 AAAAG-AAAAG-AAAAAATGAA
1 AAAAGAAAAAGTAAAAAA-GAA
30557657 AA
1 AA
30557659 CCTAAGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (21 bp):
AAAAGAAAAAGTAAAAAAGAA
Found at i:30558281 original size:213 final size:213
Alignment explanation
Indices: 30557866--30558503 Score: 974
Period size: 213 Copynumber: 3.0 Consensus size: 213
30557856 ACCTAGACTT
* * * *
30557866 CGGTGTCATGACACCTTTGATAGTGGTGCACTCGTGGTTTTGAGGGTTTTCAGTGTCGCGGCATC
1 CGGTGTCATGACACCTTTGATAGTGGTGCACTCGTGGTTTTGGGGGTTATCGGTGTCGCGACATC
* *
30557931 ACTTGTGGTGACCACAATTTCTTCACTTCAACA-TATTAGGGTTATCACGACCTCAAAGGCTCAA
66 ACTTGTGGTGACCACAATTTCTTCACTTCAACACTATTAGGGATATCACGACCTCAGAGGCTCAA
* * * *
30557995 TGTCGCGACTTCGAGCTTGGTGTCACGACTCTCTCGATAGTAGGCTACAAGTTGATTTCTTGTTG
131 TATCGCGACTTCGGGCTTGGTGTCAAGACTTTCTCGATAGTAGGCTACAAGTTGATTTCTTGTTG
30558060 TAGTGTTGCATCTTTGAG
196 TAGTGTTGCATCTTTGAG
* *
30558078 CGGTGTCACGACACCTTTGATAGTTGTGCACTCGTGGTTTTGGGGGTTATCGGTGTCGCGACATC
1 CGGTGTCATGACACCTTTGATAGTGGTGCACTCGTGGTTTTGGGGGTTATCGGTGTCGCGACATC
* * *
30558143 ACTTGTGGTGACCAAAATTTCTTCACTTCAACACTATAAGGGATATCACGACCTTAGAGGCTCAA
66 ACTTGTGGTGACCACAATTTCTTCACTTCAACACTATTAGGGATATCACGACCTCAGAGGCTCAA
*
30558208 TATCGCGACTTCGGGCTTGGTGTCAAGACTTTCTCGATAGTAGGCTACAAGTTGATTTCTTATTG
131 TATCGCGACTTCGGGCTTGGTGTCAAGACTTTCTCGATAGTAGGCTACAAGTTGATTTCTTGTTG
*
30558273 TAGTGTTGCTTCTTTGAG
196 TAGTGTTGCATCTTTGAG
* * * * * *
30558291 AGATGTCATGACACCTTTGATAATGGTACACTCATGGTTTTGGGGGTTCTCGGTGTCGCGACATC
1 CGGTGTCATGACACCTTTGATAGTGGTGCACTCGTGGTTTTGGGGGTTATCGGTGTCGCGACATC
* *
30558356 ACTTGTGGTGACCACAATTTCTTCACTTCAACACCATTAGGAATATCACGACCTCAGAGGCTCAA
66 ACTTGTGGTGACCACAATTTCTTCACTTCAACACTATTAGGGATATCACGACCTCAGAGGCTCAA
* * * *
30558421 TATTGTGACTTCGGGCTTGGTGTCATGACTCTT-TCGATAGTAGGCTACAAATTGATTTCTTGTT
131 TATCGCGACTTCGGGCTTGGTGTCAAGACT-TTCTCGATAGTAGGCTACAAGTTGATTTCTTGTT
* *
30558485 GTAGTATTTCATCTTTGAG
195 GTAGTGTTGCATCTTTGAG
30558504 GCAAAGGGAC
Statistics
Matches: 386, Mismatches: 38, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
212 91 0.24
213 293 0.76
214 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (213 bp):
CGGTGTCATGACACCTTTGATAGTGGTGCACTCGTGGTTTTGGGGGTTATCGGTGTCGCGACATC
ACTTGTGGTGACCACAATTTCTTCACTTCAACACTATTAGGGATATCACGACCTCAGAGGCTCAA
TATCGCGACTTCGGGCTTGGTGTCAAGACTTTCTCGATAGTAGGCTACAAGTTGATTTCTTGTTG
TAGTGTTGCATCTTTGAG
Found at i:30560914 original size:27 final size:26
Alignment explanation
Indices: 30560897--30560966 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
30560887 ATATTAAGTC
30560897 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
30560924 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
30560952 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
30560967 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:30560960 original size:28 final size:28
Alignment explanation
Indices: 30560897--30560994 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
30560887 ATATTAAGTC
*
30560897 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30560924 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30560952 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30560981 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30560995 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30561458 original size:12 final size:12
Alignment explanation
Indices: 30561441--30561466 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30561431 TGGGCATACT
30561441 TATGTATATATA
1 TATGTATATATA
30561453 TATGTATATATA
1 TATGTATATATA
30561465 TA
1 TA
30561467 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:30569363 original size:29 final size:28
Alignment explanation
Indices: 30569302--30569400 Score: 128
Period size: 29 Copynumber: 3.5 Consensus size: 28
30569292 ATATTAAGTC
*
30569302 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30569329 CGCACACTTAGTGCTAATATAATCAAACT
1 CGCACACTTAGTGCT-ATATAATCAAACT
* * * *
30569358 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30569387 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30569401 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 14 0.22
28 12 0.19
29 38 0.59
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30569865 original size:12 final size:12
Alignment explanation
Indices: 30569848--30569874 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
30569838 TGGGCATACT
30569848 TATGTATATATA
1 TATGTATATATA
30569860 TATGTATATATA
1 TATGTATATATA
30569872 TAT
1 TAT
30569875 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:30576296 original size:91 final size:91
Alignment explanation
Indices: 30576138--30576371 Score: 297
Period size: 91 Copynumber: 2.6 Consensus size: 91
30576128 GGGTAACCAT
* * * * * * *
30576138 CCGATAACATGCCAATTTGCTCATAAGAGTTATTCCAACTGATAATACGCCAGATGCACATAATG
1 CCGATAACACGTCAAATTACTCATAAGAGCT-TTCCAACCGATAACACGCCAGATGCACATAATG
*
30576203 CAAAGCCCGTAGGCTAAATATTCTCCA
65 CAAAGCCCATAGGCTAAATATTCTCCA
* * ** * * *
30576230 CTGATAACATGTCAAATTACTCATAAGAGCTTTGTAATCGATAACACGCCAGATGCATATAGTGC
1 CCGATAACACGTCAAATTACTCATAAGAGCTTTCCAACCGATAACACGCCAGATGCACATAATGC
*
30576295 AAAGCCCATAGGCTAAATATTCTCCC
66 AAAGCCCATAGGCTAAATATTCTCCA
* *
30576321 CCGATAACACGTCATATTGCTCATAAGAGCTTTCCAACCGATAACACGCCA
1 CCGATAACACGTCAAATTACTCATAAGAGCTTTCCAACCGATAACACGCCA
30576372 TAATCTCTGA
Statistics
Matches: 121, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
91 95 0.79
92 26 0.21
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (91 bp):
CCGATAACACGTCAAATTACTCATAAGAGCTTTCCAACCGATAACACGCCAGATGCACATAATGC
AAAGCCCATAGGCTAAATATTCTCCA
Found at i:30578155 original size:38 final size:38
Alignment explanation
Indices: 30578108--30578180 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
30578098 AATATTATTG
30578108 TTATATTTTTAGGAGTTACTTTAGAAATGAATTGATTA
1 TTATATTTTTAGGAGTTACTTTAGAAATGAATTGATTA
*
30578146 TTATATTTTTGGGAGTTACTTTAGAAATGAATTGA
1 TTATATTTTTAGGAGTTACTTTAGAAATGAATTGA
30578181 ACATTAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.47
Consensus pattern (38 bp):
TTATATTTTTAGGAGTTACTTTAGAAATGAATTGATTA
Found at i:30583418 original size:6 final size:6
Alignment explanation
Indices: 30583407--30583447 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
30583397 TATTTTCACC
30583407 AAAATG AAAATG AAAATG AAAATG AAAATAG AGAAATG AAA
1 AAAATG AAAATG AAAATG AAAATG AAAAT-G A-AAATG AAA
30583448 TAATTTGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 25 0.76
7 4 0.12
8 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:30589215 original size:96 final size:97
Alignment explanation
Indices: 30589046--30589372 Score: 334
Period size: 96 Copynumber: 3.4 Consensus size: 97
30589036 AGGGTAGGAT
* * *
30589046 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCACA-CATCAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCACATC-TCAAGTCGATGCCATGTCCCA
* * *
30589110 GACATGGTCTTACACTGGCTCTCACATATTTG-T
65 GACATGGTCTTACACTGGCTCTCACA-ACTCGAG
* * *
30589143 GTCGATGCCATGTCCCTGACATGGTCTTACACT-G-ACACATCTCATAGTCGATGCCATGTCCTA
1 GCCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCACATCTCA-AGTCGATGCCATGTCCCA
* *
30589206 GACATGGTCTTACACTAG--CTCATAACTCGAG
65 GACATGGTCTTACACTGGCTCTCACAACTCGAG
* * *
30589237 GCCGATGCCATGT-CCTAGACATGGTTTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCC
1 GCCGATGCCATGTCCCT-GACATGGTCTTACACTAGCTCACATCTCAA-GTCGATGCCATGTCCC
* * *
30589301 AAACATGGTCTTACACTGGCTCTCATAA-T-GTG
64 AGACATGGTCTTACACTGGCTCTCACAACTCGAG
* * * * *
30589333 GCTGATG-AATGTCCCAGGCAT-GTCTTACACTAGCACACAT
1 GCCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCACAT
30589373 GTCACTCAAA
Statistics
Matches: 194, Mismatches: 26, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
93 6 0.03
94 48 0.25
95 17 0.09
96 85 0.44
97 31 0.16
98 7 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCACAACTCGAG
Found at i:30589323 original size:48 final size:48
Alignment explanation
Indices: 30589044--30589326 Score: 290
Period size: 48 Copynumber: 5.9 Consensus size: 48
30589034 ATAGGGTAGG
* *
30589044 ATGCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCACA-CATCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC-TCA
* * **
30589092 A-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATCTCA
* * * * *
30589141 GTGTCGATGCCATGTCCCTGACATGGTCTTACACT-G-ACACATCTC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCA
* * * * *
30589186 ATAGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCAT-AACTCG
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATCTCA
* * * *
30589235 AGGCCGATGCCATGTCCTAGACATGGTTTTACACTAGCTCTCATCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCA
*
30589283 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
30589327 AATGTGGCTG
Statistics
Matches: 197, Mismatches: 28, Indels: 20
0.80 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.18
47 38 0.19
48 86 0.44
49 5 0.03
50 32 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCA
Found at i:30589359 original size:142 final size:142
Alignment explanation
Indices: 30589048--30589366 Score: 337
Period size: 142 Copynumber: 2.2 Consensus size: 142
30589038 GGTAGGATGC
* * * * * *
30589048 CGATGCCATGCCCCAGACATGGTCTTACACTGGCTCA-CACATC-AAGTCGATGCCATGTCCCAG
1 CGATGCAATGTCCCAGACATGGTCTTACACTAGCTCATAAC-TCGAGGCCGATGCCATGTCCCAG
* *** * **
30589111 ACATGGTCTTACACTGGCTCTCACATATTTGTGTCGATGCCATGTCCCTGACATGGTCTTACACT
65 ACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACT
30589176 GACACATCTCATAGT
129 GA-ACATCTCATAGT
* * *
30589191 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATAACTCGAGGCCGATGCCATGTCCTAGA
1 CGATGCAATGTCCCAGACATGGTCTTACACTAGCTCATAACTCGAGGCCGATGCCATGTCCCAGA
* *
30589256 CATGGTTTTACACTAGCTCT-CATCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTG-
66 CATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGA
*
30589319 GC-TCTCATAATGT
131 ACATCTCAT-A-GT
*
30589332 GGCTGATG-AATGTCCCAGGCAT-GTCTTACACTAGC
1 --C-GATGCAATGTCCCAGACATGGTCTTACACTAGC
30589367 ACACATGTCA
Statistics
Matches: 149, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
139 6 0.04
140 2 0.01
141 2 0.01
142 49 0.33
143 48 0.32
144 42 0.28
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
CGATGCAATGTCCCAGACATGGTCTTACACTAGCTCATAACTCGAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGA
ACATCTCATAGT
Found at i:30591631 original size:21 final size:22
Alignment explanation
Indices: 30591598--30591639 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
30591588 GATACTTGGT
*
30591598 AAAATGTATCGATACTTTTTGA
1 AAAATGTACCGATACTTTTTGA
30591620 AAAAT-TACCGATACTTTTTG
1 AAAATGTACCGATACTTTTTG
30591640 TAATTTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (22 bp):
AAAATGTACCGATACTTTTTGA
Found at i:30591780 original size:21 final size:19
Alignment explanation
Indices: 30591756--30591800 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
30591746 AAAGCAATAC
* *
30591756 TAACTTGTTTTAAAATAGTT
1 TAACTTGATTAAAAAT-GTT
30591776 GTAACTTGATTAAAAATGTT
1 -TAACTTGATTAAAAATGTT
30591796 TAACT
1 TAACT
30591801 CAATTGGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 3 0.14
21 14 0.64
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (19 bp):
TAACTTGATTAAAAATGTT
Found at i:30596060 original size:46 final size:46
Alignment explanation
Indices: 30596011--30596190 Score: 156
Period size: 46 Copynumber: 3.9 Consensus size: 46
30596001 TACACTGACA
*
30596011 CATCTCATA-GCCGATGCATGTCCCAAACATATCTTACACTGGCTT
1 CATCTCATAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTT
* * * * *
30596056 ACATCTC-TAGGCCGATGCATGTCTCAGACATGCCTTACAGTAGCTCT
1 -CATCTCATAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCT-T
* * *
30596103 CGTCTCA-ATGCCGATGCCATGTCCCAAAAATGGTCTTACACTGGC-T
1 CATCTCATAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTT
* *
30596149 C-TCATAAT-GTGACTGATGCATGTCCCAAACATGTCTTACACT
1 CATC-TCATAG-G-CCGATGCATGTCCCAAACATGTCTTACACT
30596191 AGCACACAAA
Statistics
Matches: 107, Mismatches: 18, Indels: 18
0.75 0.13 0.13
Matches are distributed among these distances:
45 4 0.04
46 62 0.58
47 26 0.24
48 15 0.14
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (46 bp):
CATCTCATAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTT
Found at i:30599893 original size:21 final size:21
Alignment explanation
Indices: 30599852--30599894 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
30599842 TTATTATAAT
* *
30599852 TAACATTATTTTAATATAAAA
1 TAACATTAATTTAATAGAAAA
30599873 TAACATATAATTTAAT-GAAAA
1 TAACAT-TAATTTAATAGAAAA
30599894 T
1 T
30599895 TCATTCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
TAACATTAATTTAATAGAAAA
Found at i:30610846 original size:72 final size:72
Alignment explanation
Indices: 30610725--30610864 Score: 244
Period size: 72 Copynumber: 1.9 Consensus size: 72
30610715 CTGACAAAAT
* *
30610725 AGTTACTCAGGTTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAAACAGTCACCACTAATCA
1 AGTTACTCAAGTTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAAACAATCACCACTAATCA
30610790 TTTCCGC
66 TTTCCGC
* *
30610797 AGTTACTCAAGTTTCAATTCAGTCTCTCAACTTTCGAAAAATAATAAAACAATCACCACTAATCA
1 AGTTACTCAAGTTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAAACAATCACCACTAATCA
30610862 TTT
66 TTT
30610865 TCCGTTACTG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (72 bp):
AGTTACTCAAGTTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAAACAATCACCACTAATCA
TTTCCGC
Found at i:30612491 original size:34 final size:35
Alignment explanation
Indices: 30612448--30612526 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
30612438 ATAGGTAAGC
30612448 TTATATTGAACTTGAT-TATTCGATTACATGTGAA-
1 TTATATTGAACTT-ATATATTCGATTACATGTGAAG
* **
30612482 TTATATTGAACTTATATATTCGGTTTTATGTGAAG
1 TTATATTGAACTTATATATTCGATTACATGTGAAG
*
30612517 TTATTTTGAA
1 TTATATTGAA
30612527 TGTGCATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 2 0.05
34 28 0.72
35 9 0.23
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTATATTGAACTTATATATTCGATTACATGTGAAG
Found at i:30615569 original size:46 final size:46
Alignment explanation
Indices: 30615519--30615644 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
30615509 TGGTTGAGCA
*
30615519 TCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
30615565 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
30615611 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
30615645 AGGGCGGGTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:30623149 original size:40 final size:40
Alignment explanation
Indices: 30623094--30623338 Score: 338
Period size: 40 Copynumber: 6.2 Consensus size: 40
30623084 CGGATGATAA
*
30623094 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
30623134 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
30623174 CGTAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
* *
30623214 CAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
30623254 CGAAGGCATTTGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
* * *
30623294 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
30623333 CGAAGG
1 CGAAGG
30623339 TACTTGGTTT
Statistics
Matches: 193, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
39 16 0.08
40 175 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:30627417 original size:23 final size:23
Alignment explanation
Indices: 30627387--30627434 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
30627377 AGTTGAACTA
30627387 TAGGTTACATGTGATGTTTTATT
1 TAGGTTACATGTGATGTTTTATT
30627410 TAGGTTACATGTGATGTTTTATT
1 TAGGTTACATGTGATGTTTTATT
30627433 TA
1 TA
30627435 ACTTCTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.52
Consensus pattern (23 bp):
TAGGTTACATGTGATGTTTTATT
Found at i:30630062 original size:16 final size:16
Alignment explanation
Indices: 30630041--30630072 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30630031 AGAATGGAGT
30630041 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
30630057 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
30630073 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:30633547 original size:25 final size:26
Alignment explanation
Indices: 30633505--30633558 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
30633495 AAAAGATAGG
* * *
30633505 AAACAAAATAAGTCTAAG-AAAATAA
1 AAACAAAACAACTATAAGAAAAATAA
30633530 AAACAAAACAACTATAAGCAAAAATAA
1 AAACAAAACAACTATAAG-AAAAATAA
30633557 AA
1 AA
30633559 TTAAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.62
27 9 0.38
ACGTcount: A:0.70, C:0.11, G:0.06, T:0.13
Consensus pattern (26 bp):
AAACAAAACAACTATAAGAAAAATAA
Found at i:30635313 original size:16 final size:15
Alignment explanation
Indices: 30635255--30635314 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
30635245 AAAAAGCATG
*
30635255 ATAAATACAATAAAA
1 ATAAATAAAATAAAA
*
30635270 ATAAATAAGAATAGAA
1 ATAAATAA-AATAAAA
30635286 ATAAGAGT--AATAATAA
1 ATAA-A-TAAAATAA-AA
30635302 ATAAATAAAATAA
1 ATAAATAAAATAA
30635315 CGAGTGAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
14 1 0.03
15 12 0.33
16 21 0.58
17 1 0.03
18 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (15 bp):
ATAAATAAAATAAAA
Found at i:30639674 original size:10 final size:10
Alignment explanation
Indices: 30639624--30639675 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
30639614 AAATCTATCG
*
30639624 AAAA-TAATC
1 AAAATTAATT
*
30639633 AAAATTAATC
1 AAAATTAATT
30639643 AAAATTAATTAT
1 AAAATTAA-T-T
30639655 AAAATTAATT
1 AAAATTAATT
30639665 AAAATTAATT
1 AAAATTAATT
30639675 A
1 A
30639676 TTTTAATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
9 4 0.10
10 25 0.64
11 2 0.05
12 8 0.21
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:30639686 original size:22 final size:22
Alignment explanation
Indices: 30639633--30639676 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
30639623 GAAAATAATC
*
30639633 AAAATTAATCAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
30639655 AAAATTAATTAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
30639677 TTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:30643237 original size:16 final size:15
Alignment explanation
Indices: 30643216--30643256 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
30643206 AAAGTTGATA
30643216 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
30643232 ATAATTGATATAATT
1 ATAATTAATATAATT
30643247 ATATATTAAT
1 ATA-ATTAAT
30643257 GATTATCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:30644128 original size:34 final size:34
Alignment explanation
Indices: 30644081--30644151 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
30644071 AAAGACCAAC
*
30644081 CTATAGGGTAACATCCCTAAAGGTGTCTTGTATG
1 CTATAGGGCAACATCCCTAAAGGTGTCTTGTATG
30644115 CTATAGGGCAACATCCCTAAAGGTGTCTTGTATG
1 CTATAGGGCAACATCCCTAAAGGTGTCTTGTATG
30644149 CTA
1 CTA
30644152 ACCTATAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (34 bp):
CTATAGGGCAACATCCCTAAAGGTGTCTTGTATG
Found at i:30647975 original size:10 final size:10
Alignment explanation
Indices: 30647953--30647999 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
30647943 AAATCAGTTG
30647953 AAAA-TAATT
1 AAAATTAATT
*
30647962 AAAATTAATC
1 AAAATTAATT
30647972 AAAATTAATTAT
1 AAAATTAA-T-T
30647984 AAAATTAATT
1 AAAATTAATT
30647994 AAAATT
1 AAAATT
30648000 CAATGTGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 4 0.12
10 19 0.58
11 2 0.06
12 8 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTAATT
Found at i:30651541 original size:16 final size:16
Alignment explanation
Indices: 30651506--30651541 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
30651496 TCGAAATGCT
*
30651506 GAAATACCGAAAAATT
1 GAAATACCGAAAAATC
*
30651522 GAAATACCGAAAAGTC
1 GAAATACCGAAAAATC
30651538 GAAA
1 GAAA
30651542 GTTTAGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (16 bp):
GAAATACCGAAAAATC
Found at i:30656516 original size:11 final size:11
Alignment explanation
Indices: 30656499--30656542 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
30656489 AATCATTTAA
30656499 TAATAAAATAT
1 TAATAAAATAT
* *
30656510 TACTAAAAATCT
1 TAAT-AAAATAT
30656522 TAATAAAATAT
1 TAATAAAATAT
*
30656533 TAATTAAATA
1 TAATAAAATA
30656543 ATGTTTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:30661269 original size:42 final size:43
Alignment explanation
Indices: 30661161--30661271 Score: 100
Period size: 43 Copynumber: 2.6 Consensus size: 43
30661151 AACAAGTACA
* * * * *
30661161 ATGTCGACGTCCC-GAACGTGGTCTTACATGTAATTCGATATCG
1 ATGTCGATGTCCCAG-ACATGGTCTTACACGAAATTAGATATCG
* ** * * *
30661204 ATGCCTCTGTTCCAAACAGGGTCTTACACGAAATTAGATA-CG
1 ATGTCGATGTCCCAGACATGGTCTTACACGAAATTAGATATCG
30661246 ATGTCGATGTCCCAGACATGGTCTTA
1 ATGTCGATGTCCCAGACATGGTCTTA
30661272 AATGTAAATC
Statistics
Matches: 50, Mismatches: 17, Indels: 3
0.71 0.24 0.04
Matches are distributed among these distances:
42 22 0.44
43 28 0.56
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (43 bp):
ATGTCGATGTCCCAGACATGGTCTTACACGAAATTAGATATCG
Found at i:30664433 original size:46 final size:47
Alignment explanation
Indices: 30664329--30664448 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
30664319 TGTCTTCGAC
** * *
30664329 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
30664377 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
30664423 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
30664449 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:30668712 original size:48 final size:46
Alignment explanation
Indices: 30668655--30668761 Score: 133
Period size: 48 Copynumber: 2.3 Consensus size: 46
30668645 TGTCTTCGAC
* *
30668655 ATGGACTTACATGAATTATTCCTGTCTCCAATAGCATATATATATAAT
1 ATGGACTTACATGAATCATTCCTGTCTCCAA-AGC-CATATATATAAT
* ** * *
30668703 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATAAT
30668749 ATGGACTTACATG
1 ATGGACTTACATG
30668762 GCTCATTTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 21 0.41
47 3 0.06
48 27 0.53
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATAAT
Found at i:30668759 original size:46 final size:48
Alignment explanation
Indices: 30668655--30668774 Score: 154
Period size: 46 Copynumber: 2.5 Consensus size: 48
30668645 TGTCTTCGAC
** * *
30668655 ATGGACTTACATGAATTATTCCTGTCTCCAATAGCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATAGCACATATATATAAT
* * *
30668703 ATGGGCTTACATGGCTCATTCCTGTCTCCAA-AGC-CATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATAGCACATATATATAAT
*
30668749 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
30668775 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
47 3 0.05
48 27 0.43
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAATAGCACATATATATAAT
Found at i:30671474 original size:19 final size:20
Alignment explanation
Indices: 30671446--30671483 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
30671436 CAATATTCAT
*
30671446 ATATTCTTTTATTTTTCAAC
1 ATATTCTTTTATTTATCAAC
30671466 ATATT-TTTTATTTATCAA
1 ATATTCTTTTATTTATCAA
30671484 TATTTTCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATTCTTTTATTTATCAAC
Found at i:30672736 original size:12 final size:12
Alignment explanation
Indices: 30672701--30672739 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
30672691 CATTTAATAA
*
30672701 TAAAATATTACT
1 TAAAATATTAAT
*
30672713 AAAAATA-TAAT
1 TAAAATATTAAT
30672724 TAAAATATTAAT
1 TAAAATATTAAT
30672736 TAAA
1 TAAA
30672740 TAACATTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAATATTAAT
Found at i:30673180 original size:21 final size:21
Alignment explanation
Indices: 30673155--30673198 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
30673145 ACTTCTCCCA
30673155 TTTTTATCACTTTTATTTC-CT
1 TTTTTATCAC-TTTATTTCACT
* *
30673176 TTTTTTTCTCTTTATTTCACT
1 TTTTTATCACTTTATTTCACT
30673197 TT
1 TT
30673199 ATTGAGGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTATCACTTTATTTCACT
Found at i:30679483 original size:24 final size:24
Alignment explanation
Indices: 30679453--30679505 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
30679443 TGTTGTTTTT
30679453 GCTACTGTTTTCTCACTTTTTGCC
1 GCTACTGTTTTCTCACTTTTTGCC
30679477 GCTACTGTTTTCTCACTTTTTGCC
1 GCTACTGTTTTCTCACTTTTTGCC
*
30679501 ACTAC
1 GCTAC
30679506 CTTCCATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.11, C:0.30, G:0.11, T:0.47
Consensus pattern (24 bp):
GCTACTGTTTTCTCACTTTTTGCC
Found at i:30683717 original size:22 final size:22
Alignment explanation
Indices: 30683692--30683766 Score: 116
Period size: 22 Copynumber: 3.4 Consensus size: 22
30683682 CGGATTTAGC
* *
30683692 TCACGAGCTTAACCCC-AGATCA
1 TCACTAGCTT-ACCCCTAGCTCA
30683714 TCACTAGCTTACCCCTAGCTCA
1 TCACTAGCTTACCCCTAGCTCA
30683736 TCACTAGCTTACCCCTAGCTCA
1 TCACTAGCTTACCCCTAGCTCA
30683758 TCACTAGCT
1 TCACTAGCT
30683767 CATGCACCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
21 5 0.10
22 45 0.90
ACGTcount: A:0.25, C:0.39, G:0.11, T:0.25
Consensus pattern (22 bp):
TCACTAGCTTACCCCTAGCTCA
Found at i:30683764 original size:11 final size:11
Alignment explanation
Indices: 30683711--30683769 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
30683701 TAACCCCAGA
30683711 TCATCACTAGC
1 TCATCACTAGC
* * *
30683722 TTACCCCTAGC
1 TCATCACTAGC
30683733 TCATCACTAGC
1 TCATCACTAGC
* * *
30683744 TTACCCCTAGC
1 TCATCACTAGC
30683755 TCATCACTAGC
1 TCATCACTAGC
30683766 TCAT
1 TCAT
30683770 GCACCTATAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.24, C:0.39, G:0.08, T:0.29
Consensus pattern (11 bp):
TCATCACTAGC
Found at i:30685471 original size:10 final size:11
Alignment explanation
Indices: 30685435--30685474 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
30685425 ATATAGTACA
*
30685435 AAAAAAATTCA
1 AAAAAAATTCG
30685446 AAAAAAATTCG
1 AAAAAAATTCG
*
30685457 AAAAAAATTTG
1 AAAAAAATTCG
30685468 AAAAAAA
1 AAAAAAA
30685475 AAATTTGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:30685490 original size:14 final size:14
Alignment explanation
Indices: 30685457--30685483 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30685447 AAAAAATTCG
30685457 AAAAAAATTTGAAA
1 AAAAAAATTTGAAA
30685471 AAAAAAATTTGAA
1 AAAAAAATTTGAA
30685484 GTGAAAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AAAAAAATTTGAAA
Found at i:30690078 original size:28 final size:28
Alignment explanation
Indices: 30690010--30690163 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
30690000 CATGAGATTG
* * * *
30690010 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
30690039 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
30690067 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
30690095 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
30690123 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
30690150 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
30690164 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.64
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:30701330 original size:5 final size:5
Alignment explanation
Indices: 30701320--30701352 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
30701310 ACTTTGTAAA
30701320 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
30701353 GAACACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:30701733 original size:50 final size:50
Alignment explanation
Indices: 30701677--30702024 Score: 369
Period size: 50 Copynumber: 6.9 Consensus size: 50
30701667 TGCGACCTAT
*
30701677 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACTTAA
1 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
* * * * * *
30701727 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
1 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
* **
30701777 CAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACATGCGTGACTTAA
1 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
** ** *
30701827 CCGTCTGAG-ACACGTAGTAGCCTATACTTAGTACTACACACGTGA-TCGAA
1 CAATCTG-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA
* * ** * * * * *
30701877 GTTAA-CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
1 --CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
* * * * *
30701928 CAATATGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
1 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
*
30701978 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACT
1 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
30702025 CACAATGAAT
Statistics
Matches: 242, Mismatches: 49, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
49 3 0.01
50 206 0.85
51 33 0.14
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAA
Found at i:30701840 original size:100 final size:99
Alignment explanation
Indices: 30701662--30702011 Score: 436
Period size: 100 Copynumber: 3.5 Consensus size: 99
30701652 CTTAATTCTA
**
30701662 ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACTTAA
1 ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACATGC-TGACTTAA
*
30701727 CCATCTGATACACGTAGTAGCCTGCACTTAGTACT
65 CCATCTGAGACACGTAGTAGCCTGCACTTAGTACT
*
30701762 ACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACATGCGTGACTTAA
1 ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACATGC-TGACTTAA
* **
30701827 CCGTCTGAGACACGTAGTAGCCTATACTTAGTACT
65 CCATCTGAGACACGTAGTAGCCTGCACTTAGTACT
* * ** * * ** * *
30701862 ACACACGTGATCGAAGTTAA-CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGC-GACC
1 ACACATGCGA-CCTA-TCAATCTGGTACACGTAGTAGCCTGCACTTAGTACT--ACATGCTGACT
* * *
30701925 TATCAATATG-GTACACGTAGTAGCCTGCACTTAGTACT
62 TAACCATCTGAG-ACACGTAGTAGCCTGCACTTAGTACT
30701963 ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTAC
1 ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTAC
30702012 AACACACGTG
Statistics
Matches: 210, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
99 3 0.01
100 129 0.61
101 69 0.33
102 3 0.01
103 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
ACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACATGCTGACTTAAC
CATCTGAGACACGTAGTAGCCTGCACTTAGTACT
Found at i:30701924 original size:151 final size:150
Alignment explanation
Indices: 30701664--30702022 Score: 447
Period size: 151 Copynumber: 2.4 Consensus size: 150
30701654 TAATTCTAAC
* * * * *
30701664 ACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGA-CTTAA-
1 ACATGCGACCTAACAATCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGTGATC-GAAG
** * * * ** * * *
30701727 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGT
65 TTAACGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACACGT
30701792 AGTAGCCTGCACTTAGTACT-
130 AGTAGCCTGCACTTAGTACTA
* ** * *
30701812 ACATGCGTGACTTAACCGTCTGAG-ACACGTAGTAGCCTATACTTAGTACTACACACGTGATCGA
1 ACATGC--GACCTAACAATCTG-GTACACGTAGTAGCCTACACTTAGTACAACACACGTGATCGA
30701876 AGTTAACGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACAC
63 AGTTAACGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACAC
30701941 GTAGTAGCCTGCACTTAGTACTA
128 GTAGTAGCCTGCACTTAGTACTA
* *
30701964 CACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGA
1 -ACATGCGACCTAACAATCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGTGA
30702023 CTCACAATGA
Statistics
Matches: 178, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
148 6 0.03
150 46 0.26
151 120 0.67
153 6 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (150 bp):
ACATGCGACCTAACAATCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGTGATCGAAGT
TAACGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACACGTA
GTAGCCTGCACTTAGTACTA
Found at i:30702400 original size:19 final size:20
Alignment explanation
Indices: 30702372--30702418 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
30702362 AAGAACATGT
30702372 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
30702393 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
30702412 TATATAT
1 TATATAT
30702419 TCTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:30712836 original size:19 final size:19
Alignment explanation
Indices: 30712812--30712848 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
30712802 AAAGAGAAGA
30712812 GAAGAACAAGTGATTTTGG
1 GAAGAACAAGTGATTTTGG
30712831 GAAGAACAAGTGATTTTG
1 GAAGAACAAGTGATTTTG
30712849 AATATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.30, T:0.27
Consensus pattern (19 bp):
GAAGAACAAGTGATTTTGG
Found at i:30713275 original size:19 final size:20
Alignment explanation
Indices: 30713253--30713290 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
30713243 CAAGAAAATA
*
30713253 TTGATAAAT-AAAGAATATG
1 TTGAAAAATAAAAGAATATG
30713272 TTGAAAAATAAAAGAATAT
1 TTGAAAAATAAAAGAATAT
30713291 ATGAATATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGAAAAATAAAAGAATATG
Found at i:30718190 original size:284 final size:284
Alignment explanation
Indices: 30717680--30718233 Score: 946
Period size: 284 Copynumber: 2.0 Consensus size: 284
30717670 AGCCTGCACC
** *
30717680 TATTTTATGAAAAATTTTGAAAATTATATTTGCCACAAGGCCTAGCACACGGGCGTGTAACTTGG
1 TATTTTATGAAAAATTTTGAAAATTATATTCACCACAAGGCCTAGCACACGAGCGTGTAACTTGG
* * *
30717745 CTGTGTGACTTCTTTTGTTGCATGACGTCATAAATAGAGAGTTACATGGGTTAAGGACACGGGCG
66 CTGTGTGACTTCTTTTGTTGCATAACGTCATAAACAGAGAGTTACATGGGTTAAAGACACGGGCG
*
30717810 TGTGTGACCACACGGCCAACCCACACGAGCGTGTCCCAAGCCACACAGGCTTGTTACCTGTTTTG
131 TGTGTGACCACACAGCCAACCCACACGAGCGTGTCCCAAGCCACACAGGCTTGTTACCTGTTTTG
*
30717875 ATGAAAAAATTTCTAAGTGTTGTAGAATTTTCTAAATTATCGGTTTAGTCCTGAACCACCTCCAA
196 ATGAAAAAATTTCTAAGTGTTGTAGAATTTTCTAAATTATCGGTTTAGTCCCGAACCACCTCCAA
30717940 TGCATGTTTTGGGCATCGTAGGTT
261 TGCATGTTTTGGGCATCGTAGGTT
*
30717964 TATTTTATGAAAAATTTTGAAAATTATATTCACCACACGGCCTAGCACACGAGCGTGTAACTTGG
1 TATTTTATGAAAAATTTTGAAAATTATATTCACCACAAGGCCTAGCACACGAGCGTGTAACTTGG
* *
30718029 CTGTGTGACTTCTTTTGTTGCATAATGTCATAAACAGAGAGTTACATGGGTTAAAGACACGGGTG
66 CTGTGTGACTTCTTTTGTTGCATAACGTCATAAACAGAGAGTTACATGGGTTAAAGACACGGGCG
* * * *
30718094 TGTGTGACCACACAGCCAACCCATACGGGCGTGTTCCAAGCCACACGGGCTTGTTACCTGTTTTG
131 TGTGTGACCACACAGCCAACCCACACGAGCGTGTCCCAAGCCACACAGGCTTGTTACCTGTTTTG
* * *
30718159 ATGAAAAATTTTCTAAGTGTTGTAGAATTTTCTAAATTCTCGGTTTAGTCCCGAACCACTTCCAA
196 ATGAAAAAATTTCTAAGTGTTGTAGAATTTTCTAAATTATCGGTTTAGTCCCGAACCACCTCCAA
30718224 TGCATGTTTT
261 TGCATGTTTT
30718234 AGGCCTTTTA
Statistics
Matches: 252, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 252 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (284 bp):
TATTTTATGAAAAATTTTGAAAATTATATTCACCACAAGGCCTAGCACACGAGCGTGTAACTTGG
CTGTGTGACTTCTTTTGTTGCATAACGTCATAAACAGAGAGTTACATGGGTTAAAGACACGGGCG
TGTGTGACCACACAGCCAACCCACACGAGCGTGTCCCAAGCCACACAGGCTTGTTACCTGTTTTG
ATGAAAAAATTTCTAAGTGTTGTAGAATTTTCTAAATTATCGGTTTAGTCCCGAACCACCTCCAA
TGCATGTTTTGGGCATCGTAGGTT
Found at i:30726687 original size:20 final size:20
Alignment explanation
Indices: 30726659--30726710 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
30726649 TGGGTGAGGG
30726659 ACACAGGCGTGTCCCTAAGC
1 ACACAGGCGTGTCCCTAAGC
*
30726679 ACACGGGCGTGTCCCTAAGC
1 ACACAGGCGTGTCCCTAAGC
30726699 ACACAGGCGTGT
1 ACACAGGCGTGT
30726711 GTTTTGCCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.23, C:0.33, G:0.29, T:0.15
Consensus pattern (20 bp):
ACACAGGCGTGTCCCTAAGC
Found at i:30741900 original size:19 final size:20
Alignment explanation
Indices: 30741863--30741900 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30741853 ATAAGGTGGT
30741863 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
30741883 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
30741901 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:30749085 original size:46 final size:46
Alignment explanation
Indices: 30749035--30749207 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
30749025 TGGTTGAGCA
30749035 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
30749081 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
30749126 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
30749174 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
30749208 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:30749191 original size:93 final size:93
Alignment explanation
Indices: 30749032--30749202 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
30749022 GGATGGTTGA
* *
30749032 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
30749097 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
30749125 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
30749190 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
30749203 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:30749469 original size:19 final size:20
Alignment explanation
Indices: 30749432--30749469 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30749422 ATAAGGTGGT
30749432 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
30749452 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
30749470 TGGTACCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:30757750 original size:22 final size:21
Alignment explanation
Indices: 30757724--30757764 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
30757714 ATTGTTTATG
30757724 TTTATGTTTATATTATTATTTA
1 TTTATGTTTAT-TTATTATTTA
*
30757746 TTTATGTTTATTTCTTATT
1 TTTATGTTTATTTATTATT
30757765 CCTATTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTATGTTTATTTATTATTTA
Found at i:30758598 original size:21 final size:20
Alignment explanation
Indices: 30758567--30758606 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
30758557 TTCTTGAAAC
*
30758567 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
30758587 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
30758607 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:30760979 original size:140 final size:141
Alignment explanation
Indices: 30760646--30761003 Score: 369
Period size: 140 Copynumber: 2.5 Consensus size: 141
30760636 AATACCGATA
30760646 CATGTCCCAAACATGGTCTTACACTGGCTCATCTATCAA-GT--CGATGCTATGTCCCAGACATG
1 CATGTCCCAAA-ATGGTCTTACACTGGCTC-TC-AT-AATGTGCCGATGC-ATGTCCCAGACAT-
* *
30760708 GTCTTACACTGACTATCGAAATCGAGGTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCT
60 GTCTTACACTGGCTATC-AAATCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCT
**
30760773 CACATATCCGTGCTGATGC
124 -ACATATCAATGCTGATGC
* * * *
30760792 CATGTCCCATACATGGTCTTACACT-GAT-ACAT-TTCGTAGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCA-AAATGGTCTTACACTGGCTCTCATAAT-GT-GCCGATGCATGTCCCAGACATGTC
* * * *
30760854 TTACACTGGCT-T-AAATCTCGAGGCCGATG-TATGTGCCAGACAT-GTCTTACACTAGCTCT-C
63 TTACACTGGCTATCAAA--TCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTAC
* *
30760914 GTCTCAATGCTGATGC
126 ATATCAATGCTGATGC
*
30760930 CATGTCCCAGAAATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACATGTCT
1 CATGTCCCA-AAATGGTCTTACACTGGCTCTCATAATGT-GCCGATGCATGTCCCAGACATGTCT
30760995 TACACTGGC
64 TACACTGGC
30761004 ACACAAATAA
Statistics
Matches: 180, Mismatches: 21, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
138 36 0.20
139 2 0.01
140 57 0.32
141 12 0.07
142 15 0.08
143 14 0.08
144 13 0.07
145 8 0.04
146 22 0.12
147 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (141 bp):
CATGTCCCAAAATGGTCTTACACTGGCTCTCATAATGTGCCGATGCATGTCCCAGACATGTCTTA
CACTGGCTATCAAATCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATC
AATGCTGATGC
Found at i:30761002 original size:46 final size:47
Alignment explanation
Indices: 30760640--30761003 Score: 236
Period size: 46 Copynumber: 7.7 Consensus size: 47
30760630 GGGTATAATA
* **
30760640 CCGATACATGTCCCAAACATGGTCTTACACTGGCTCATC-T-ATCAAG
1 CCGATGCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAATCGTG
* * * * *
30760686 TCGATGCTATGTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGG
1 CCGATGC-ATGTCCCAAACATGGTCTTACACTGGCTCTC-ATAATCG-TG
* * * *
30760735 TCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGTG
1 CCGATG-CATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-CGTG
* * * * *
30760785 CTGATGCCATGTCCCATACATGGTCTTACACT-GAT-ACAT-TTCGTAG
1 CCGATG-CATGTCCCAAACATGGTCTTACACTGGCTCTCATAATCGT-G
* *
30760831 CCGATGCATGTCCCAGACAT-GTCTTACACTGGCT-T-A-AATCTCGAGG
1 CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCTCATAA--TCG-TG
* * * * * * *
30760877 CCGATGTATGTGCCAGACAT-GTCTTACACTAGCTCTCGT-CTCAATG
1 CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATC-GTG
*
30760923 CTGATGCCATGTCCCAGAA-ATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCA-AACATGGTCTTACACTGGCTCTCATAATCGT-G
30760971 CCGATGCATGTCCCAAACAT-GTCTTACACTGGC
1 CCGATGCATGTCCCAAACATGGTCTTACACTGGC
30761004 ACACAAATAA
Statistics
Matches: 250, Mismatches: 43, Indels: 50
0.73 0.13 0.15
Matches are distributed among these distances:
44 11 0.04
45 18 0.07
46 72 0.29
47 48 0.19
48 30 0.12
49 37 0.15
50 32 0.13
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATCGTG
Found at i:30762852 original size:49 final size:50
Alignment explanation
Indices: 30762780--30762908 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 50
30762770 TAATGCTGAT
**
30762780 GCCATGTCCCAGACATGGTCTTACACTGACTATCGA-A-ATTGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATC-ACATATCCAGGCCGAC
* * * *
30762829 GCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACATATCCAGGCCGAC
30762879 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
30762909 ACATCTCGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
48 2 0.03
49 31 0.45
50 35 0.51
51 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCCAGGCCGAC
Found at i:30762959 original size:46 final size:48
Alignment explanation
Indices: 30762772--30763040 Score: 222
Period size: 46 Copynumber: 5.6 Consensus size: 48
30762762 ATAGGGTATA
* *
30762772 ATGCTGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCGAAAT-T-G-
1 ATGCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CT-T--ACATCTCGT
* * * * *
30762821 AGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATC-C
1 ATGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCTCGT
30762871 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGT
1 ATGCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCGT
*
30762918 A-GCCGATGCATGTCCCAAACAT-GTCTTACACTAGCTTACATCTCG-
1 ATGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGT
* ** ** *
30762963 AGGCTAATGCATGTCCCAGACAT-GTCTTACACTAGCTCCCATCTC-A
1 ATGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGT
30763009 ATGCCGATGTCATGTCCCAGACATGGTCTTAC
1 ATGCCGATG-CATGTCCCAGACATGGTCTTAC
30763041 TCTGGCTCTC
Statistics
Matches: 186, Mismatches: 21, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
46 65 0.35
47 15 0.08
48 10 0.05
49 36 0.19
50 34 0.18
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGT
Found at i:30777778 original size:42 final size:42
Alignment explanation
Indices: 30777724--30777841 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
30777714 TTAGGGTTAC
30777724 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
30777766 TGAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATTGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
** * *
30777809 CAAGATTACATGTAAGACCATATTTGGGATATG
1 TGAGATTACGTGTAAGACCATATCTGGGATATG
30777842 AGATTGGTAC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:30779466 original size:31 final size:31
Alignment explanation
Indices: 30779429--30779632 Score: 311
Period size: 31 Copynumber: 6.6 Consensus size: 31
30779419 TGTGTGCAAT
30779429 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
30779460 GTGAAAAGTGGTAACTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
30779491 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
30779522 GTGAAAAGTAGTAGCTTCAGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
30779553 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
30779584 GTGAAAACTGGTAGC-TCTAGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
*
30779615 GTGAATAGTGGTAGCTTC
1 GTGAAAAGTGGTAGCTTC
30779633 ACCTATCGAA
Statistics
Matches: 158, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
30 2 0.01
31 154 0.97
32 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:30779588 original size:93 final size:93
Alignment explanation
Indices: 30779429--30779695 Score: 323
Period size: 93 Copynumber: 2.9 Consensus size: 93
30779419 TGTGTGCAAT
* * * *
30779429 GTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAACTTCGGCTACCTGATCAGTG
1 GTGAAAAGTGGTAGCTTCAGCTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
*
30779494 AAAAGTGGTAGCTTCGGCTACCTGATCA
66 AAAAGTGGTAGCTTCGGCTACCTAATCA
*
30779522 GTGAAAAGTAGTAGCTTCAGCTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
1 GTGAAAAGTGGTAGCTTCAGCTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
* *
30779587 AAAACTGGTAGC-TCTAGCTACCTAATCA
66 AAAAGTGGTAGCTTC-GGCTACCTAATCA
* * * * * *
30779615 GTGAATAGTGGTAGCTTCACCTATC-GAAT-GTGAAAAG-GGATAGCTTCGGCTATC-GAAT-GT
1 GTGAAAAGTGGTAGCTTCAGCTACCTGATTAGTGAAAAGTGG-TAGCTTCGGCTACCTGATTAGT
*
30779675 GAAAAG-GGATAGCTTTGGCTA
65 GAAAAGTGG-TAGCTTCGGCTA
30779696 TCGAATGTGA
Statistics
Matches: 152, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
88 2 0.01
89 15 0.10
90 6 0.04
91 21 0.14
92 5 0.03
93 103 0.68
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (93 bp):
GTGAAAAGTGGTAGCTTCAGCTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
AAAAGTGGTAGCTTCGGCTACCTAATCA
Found at i:30779658 original size:29 final size:29
Alignment explanation
Indices: 30779626--30779710 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
30779616 TGAATAGTGG
**
30779626 TAGCTTCACCTATCGAATGTGAAAAGGGA
1 TAGCTTCGGCTATCGAATGTGAAAAGGGA
30779655 TAGCTTCGGCTATCGAATGTGAAAAGGGA
1 TAGCTTCGGCTATCGAATGTGAAAAGGGA
*
30779684 TAGCTTTGGCTATCGAATGTGAAAAGG
1 TAGCTTCGGCTATCGAATGTGAAAAGG
30779711 TTAGGTATAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (29 bp):
TAGCTTCGGCTATCGAATGTGAAAAGGGA
Found at i:30779740 original size:33 final size:33
Alignment explanation
Indices: 30779703--30779961 Score: 265
Period size: 33 Copynumber: 7.9 Consensus size: 33
30779693 CTATCGAATG
*
30779703 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
* * * * *
30779736 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
* * * * *
30779768 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
* * * * *
30779800 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
* *
30779832 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
* *
30779865 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGTAAGGTATACTTTGTGTATACCACA
*
30779898 TGAAAAGG-AAGGGTATACTTTGTGTATACCATA
1 TGAAAAGGTAA-GGTATACTTTGTGTATACCACA
* * *
30779931 TGAAAAGGAAAGGTATACTTAGTGTGTACCA
1 TGAAAAGGTAAGGTATACTTTGTGTATACCA
30779962 TTCAGAAAGA
Statistics
Matches: 210, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
32 92 0.44
33 116 0.55
34 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (33 bp):
TGAAAAGGTAAGGTATACTTTGTGTATACCACA
Found at i:30779777 original size:32 final size:32
Alignment explanation
Indices: 30779703--30779839 Score: 229
Period size: 32 Copynumber: 4.2 Consensus size: 32
30779693 CTATCGAATG
* * * *
30779703 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
30779736 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
30779768 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
30779800 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
30779832 TGAAAAGG
1 TGAAAAGG
30779840 AAAGGTATAC
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 75 0.75
33 25 0.25
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (32 bp):
TGAAAAGGTTATGTACACTTTGTGTGTACACT
Found at i:30779784 original size:19 final size:19
Alignment explanation
Indices: 30779760--30779819 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
30779750 ACACTTTGTG
30779760 TGTACACTTGAAAAGGTTA
1 TGTACACTTGAAAAGGTTA
* *
30779779 TGTACACTT-----TG-TG
1 TGTACACTTGAAAAGGTTA
30779792 TGTACACTTGAAAAGGTTA
1 TGTACACTTGAAAAGGTTA
30779811 TGTACACTT
1 TGTACACTT
30779820 TGTGTGTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
13 10 0.32
14 1 0.03
18 1 0.03
19 19 0.61
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (19 bp):
TGTACACTTGAAAAGGTTA
Found at i:30779962 original size:66 final size:64
Alignment explanation
Indices: 30779703--30779959 Score: 286
Period size: 64 Copynumber: 4.0 Consensus size: 64
30779693 CTATCGAATG
* * ** *
30779703 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGG-AAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTACACT
* * * * ** *
30779768 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT-TGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TGAAAAGG-AAGGTATACTTTGTGTATACCA-TATGAAAAGGAAAGGTACACTTTGTGTGTACAC
30779831 T
64 T
* *
30779832 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATAC-CA
1 TGAAAAGG-AAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTACAC-
30779896 T
64 T
* *
30779897 ATGAAAAGGAAGGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTAGTGTGTAC
1 -TGAAAAGGAA-GGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTAC
30779960 CATTCAGAAA
Statistics
Matches: 170, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
64 59 0.35
65 54 0.32
66 57 0.34
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (64 bp):
TGAAAAGGAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTACACT
Found at i:30782416 original size:10 final size:10
Alignment explanation
Indices: 30782395--30782448 Score: 65
Period size: 10 Copynumber: 5.5 Consensus size: 10
30782385 TACTTAAATT
30782395 TAAA-AAAGA
1 TAAATAAAGA
*
30782404 TAAATATAGA
1 TAAATAAAGA
30782414 TAAATAAAGA
1 TAAATAAAGA
**
30782424 TATTTAAAGA
1 TAAATAAAGA
*
30782434 TACATAAAGA
1 TAAATAAAGA
30782444 TAAAT
1 TAAAT
30782449 GGAGATGAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
9 4 0.11
10 33 0.89
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (10 bp):
TAAATAAAGA
Found at i:30785300 original size:48 final size:47
Alignment explanation
Indices: 30785239--30785509 Score: 241
Period size: 48 Copynumber: 5.7 Consensus size: 47
30785229 TGATATATGT
*
30785239 GCTAGTGTAAGACCATGTCTGGGCCATGGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-ACCACATTATGAGA
* * * * * *
30785287 GCCAATGTAAGACCATGTCTGGG-CATGGCATCAGCA-TTGATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCACCACAT--TATGAGA
*
30785334 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA-CCACATTATGAGA
* * * *
30785382 GCTAGTGTAAGACCATGCCTGGTACATGGAAT--CGACATTGA-GACGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCACCACATT-ATGA---GA
* ** *
30785430 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-C-TTGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCACCACATT---ATGAGA
*
30785478 GCTAGTGTAAGACCGTGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
30785510 TCATAATTTA
Statistics
Matches: 182, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
45 9 0.05
46 4 0.02
47 35 0.19
48 129 0.71
49 2 0.01
50 2 0.01
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCACCACATTATGAGA
Found at i:30785392 original size:95 final size:95
Alignment explanation
Indices: 30785229--30785509 Score: 334
Period size: 96 Copynumber: 2.9 Consensus size: 95
30785219 GAAAATTGGG
* * * * *
30785229 TGATATATGTGCTAGTGTAAGACCATGTCTGGGCCATGGCATCGACCACATTATGAGAGCCAATG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACATTATGAGAGCTAGTG
30785294 TAAGACCATGTCTGGGCATGGCATC-AGCAT
66 TAAGACCATGTCTGGGCATGGCATCGA-CAT
30785324 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCTACATTATGAGAGCTAGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACATTATGAGAGCTAGT
* * *
30785388 GTAAGACCATGCCTGGTACATGGAATCGACAT
65 GTAAGACCATGTCTGG-GCATGGCATCGACAT
* * * * * ** * *
30785420 TGAGACGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA-CATGTGAGCTAGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTACATTATGAGAGCTAGT
*
30785484 GTAAGACCGTGTCTGGGACATGGCAT
65 GTAAGACCATGTCTGGG-CATGGCAT
30785510 TCATAATTTA
Statistics
Matches: 159, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
94 1 0.01
95 72 0.45
96 82 0.52
97 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (95 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACATTATGAGAGCTAGTG
TAAGACCATGTCTGGGCATGGCATCGACAT
Found at i:30790853 original size:42 final size:42
Alignment explanation
Indices: 30790798--30790913 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 42
30790788 AAAGTTACTA
* *
30790798 AGATTATGTGTAAGACCATATCTAGGATATGACATCGATATG
1 AGATTACGTGTAAGACCATATCTAGGATATGACATCGATACG
* * * *
30790840 AGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACG
1 AGA-TTACGTGTAAGACCATATCTAGGATA-TGACATCGATACG
*
30790883 AGATTACATGTAAGACCATATCTAGGATATG
1 AGATTACGTGTAAGACCATATCTAGGATATG
30790914 GCATTGGTAC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.43
43 35 0.57
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTAGGATATGACATCGATACG
Found at i:30800883 original size:25 final size:26
Alignment explanation
Indices: 30800855--30800903 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
30800845 TTATAAAATT
*
30800855 ATTTTAAAAAATACAT-TTCAAATGA
1 ATTTGAAAAAATACATATTCAAATGA
* *
30800880 ATTTGAATAAATACTTATTCAAAT
1 ATTTGAAAAAATACATATTCAAAT
30800904 TAGCTGAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (26 bp):
ATTTGAAAAAATACATATTCAAATGA
Found at i:30801930 original size:27 final size:27
Alignment explanation
Indices: 30801890--30801947 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
30801880 TTCAGTATTC
30801890 TTTTTGGATTTTTCTCATATTTTT-GGAT
1 TTTTTGGATTTTTCT--TATTTTTAGGAT
30801918 TTTTTGGA-TTTTCTTATTTTTAAGGAT
1 TTTTTGGATTTTTCTTATTTTT-AGGAT
30801945 TTT
1 TTT
30801948 ACATTTTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.25
27 13 0.46
28 8 0.29
ACGTcount: A:0.16, C:0.05, G:0.14, T:0.66
Consensus pattern (27 bp):
TTTTTGGATTTTTCTTATTTTTAGGAT
Found at i:30806051 original size:79 final size:82
Alignment explanation
Indices: 30805940--30806124 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
30805930 GCTACTCGTT
* *
30805940 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
30806003 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
30806020 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
30806083 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
30806100 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
30806125 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:30806124 original size:40 final size:40
Alignment explanation
Indices: 30805921--30806124 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
30805911 CGGAATTTAA
** *
30805921 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30805961 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
30806001 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30806040 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
30806080 CCGGATATGGTCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
30806120 CCGGA
1 CCGGA
30806125 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:30812520 original size:18 final size:19
Alignment explanation
Indices: 30812499--30812538 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
30812489 TACTAGAAAA
*
30812499 ATATATTATT-TTAATTTT
1 ATATATTATTATAAATTTT
30812517 ATATATTATTATAAATTTT
1 ATATATTATTATAAATTTT
30812536 ATA
1 ATA
30812539 ACATTGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATATATTATTATAAATTTT
Found at i:30814980 original size:28 final size:29
Alignment explanation
Indices: 30814925--30814982 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
30814915 TCCAGGGGTT
*
30814925 TTCACACGGCCTGGCACACGCTCGTGTCC
1 TTCACACGGCCTGACACACGCTCGTGTCC
30814954 TTCACACGGCCATGACACAC-CT-GTGTCC
1 TTCACACGGCC-TGACACACGCTCGTGTCC
30814982 T
1 T
30814983 AGCCCGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 7 0.26
29 13 0.48
30 7 0.26
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.22
Consensus pattern (29 bp):
TTCACACGGCCTGACACACGCTCGTGTCC
Found at i:30815494 original size:4 final size:4
Alignment explanation
Indices: 30815485--30815512 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
30815475 AAGTTTTATT
30815485 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
30815513 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:30819384 original size:30 final size:31
Alignment explanation
Indices: 30819340--30819405 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 31
30819330 CAGGCTGAGG
30819340 ACACGGGTGTGTGTGACCACACGGCCTAACCC
1 ACACGGGTGTGTGTGACCACACGGCCT-ACCC
30819372 ACACGGGTGTGTGTGACCACACGGCCTACCC
1 ACACGGGTGTGTGTGACCACACGGCCTACCC
30819403 ACA
1 ACA
30819406 TAGGCATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 7 0.21
32 27 0.79
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.15
Consensus pattern (31 bp):
ACACGGGTGTGTGTGACCACACGGCCTACCC
Found at i:30820391 original size:37 final size:38
Alignment explanation
Indices: 30820341--30820443 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 38
30820331 CATGTGAGTA
* * *
30820341 CGTGTAAGACCATAGCTAGGCTATGGCATGGTAAT-AG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGCAATGAG
* * *
30820378 CGTGTATGACCATAGCTGGGTTATGGCATCGCGATGAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGCAATGAG
*
30820416 -ATGTAAGACCATAGCTGGGCTATGGCAT
1 CGTGTAAGACCATAGCTGGGCTATGGCAT
30820444 TGTGATACAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 54 0.96
38 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (38 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATCGCAATGAG
Found at i:30824390 original size:28 final size:28
Alignment explanation
Indices: 30824359--30824428 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
30824349 ATATATGTGG
30824359 CACTTAGTGTGCGAAATATTAAGAATGA
1 CACTTAGTGTGCGAAATATTAAGAATGA
* * * * ** *
30824387 CACTTGGTGTGCCAGATATTCAGTGTGG
1 CACTTAGTGTGCGAAATATTAAGAATGA
30824415 CACTTAGTGTGCGA
1 CACTTAGTGTGCGA
30824429 GACATCGAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTAAGAATGA
Found at i:30827258 original size:46 final size:47
Alignment explanation
Indices: 30827030--30827379 Score: 253
Period size: 46 Copynumber: 7.5 Consensus size: 47
30827020 GCCAATGCTG
* *
30827030 TGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCTGATTCA
1 TGTCCCAGACATGGTCTTACACTGACTTACATCTCG-AGGCCGATGCA
* * * * *
30827075 TGTCCCAGGCAT-GTCTTACATTGACTTACGTCCCGAGGCTGATGCA
1 TGTCCCAGACATGGTCTTACACTGACTTACATCTCGAGGCCGATGCA
* * * * *
30827121 TGTCCCAGACATGGTCTTACAC-AAGCTCTAGCATATCTG-TGCCGATACCG
1 TGTCCCAGACATGGTCTTACACTGA-CT-TA-CATCTC-GAGGCCGAT-GCA
* * *
30827171 TGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTGACT-TACAT-CTCGAGGCCGATGCA
*
30827218 TGTCCCAGACAT-GTCTTACACTGACTTACGTCTCGAGGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTGACTTACATCTCGAGGCCGATGCA
* * *
30827264 TGTCCCAGACAT-GTCTTACACTGGCAC-T-CGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACT-G-ACTTACATCTCGAGGCCGATG-CA
* * * * **
30827311 TGTCCCAGACATGGTCTTACATTGGCTCT-CATAAT-GTGGATGATGCA
1 TGTCCCAGACATGGTCTTACACTGACT-TACAT-CTCGAGGCCGATGCA
30827358 TGTCCCAGACAT-GTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
30827380 AGCTCACAAT
Statistics
Matches: 248, Mismatches: 36, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
44 12 0.05
45 14 0.06
46 98 0.40
47 55 0.22
48 30 0.12
49 11 0.04
50 28 0.11
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
TGTCCCAGACATGGTCTTACACTGACTTACATCTCGAGGCCGATGCA
Found at i:30827363 original size:140 final size:142
Alignment explanation
Indices: 30826978--30827379 Score: 472
Period size: 140 Copynumber: 2.8 Consensus size: 142
30826968 GTGCCGGTGT
* * ** * * **
30826978 CATGTCCTAGACATGGTCTTACACAAGCTCTAGCATATCTGTGCCAATGCTGTGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACAAGCACTA-CATATCAATGCCGATACCATGTCCCAGACATG
* * * * * * * *
30827043 GTCTTACACTGACACATC-T--CGTAGCTGATTCATGTCCCAGGCATGTCTTACATTGACTTACG
65 GTCTTACACTGGCTC-TCATAATGTGGATGATGCATGTCCCAGACATGTCTTACACTGACTTACG
*
30827105 TCCCGAGGCTGATG
129 TCCCGAGGCCGATG
* ** *
30827119 CATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGCCGATACCGTGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACAAGCACTA-CATATCAATGCCGATACCATGTCCCAGACATG
**
30827184 GTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGT
65 GTCTTACACTGGCTCTCATAATGTGGATGATGCATGTCCCAGACATGTCTTACACTGACTTACGT
*
30827249 CTCGAGGCCGATG
130 CCCGAGGCCGATG
** * * *
30827262 CATGTCCCAGACAT-GTCTTACACTGGCACT-CGTCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGCCGATACCATGTCCCAGACATGG
*
30827325 TCTTACATTGGCTCTCATAATGTGGATGATGCATGTCCCAGACATGTCTTACACT
66 TCTTACACTGGCTCTCATAATGTGGATGATGCATGTCCCAGACATGTCTTACACT
30827380 AGCTCACAAT
Statistics
Matches: 232, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
140 81 0.35
141 75 0.32
142 13 0.06
143 63 0.27
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (142 bp):
CATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGCCGATACCATGTCCCAGACATGG
TCTTACACTGGCTCTCATAATGTGGATGATGCATGTCCCAGACATGTCTTACACTGACTTACGTC
CCGAGGCCGATG
Found at i:30828897 original size:38 final size:39
Alignment explanation
Indices: 30828855--30829063 Score: 109
Period size: 40 Copynumber: 5.3 Consensus size: 39
30828845 GTTAATTATA
30828855 CTGATTGCACACA-CGCCACTGTTTGTACTTCGATACCC
1 CTGATTGCACACAGCGCCACTGTTTGTACTTCGATACCC
* * * *
30828893 CTGATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCC
1 CTGATTGCACACA-GCGCCACTGTTTGTACTTCGATACCC
* * * * * * * * * *
30828933 TTAATTGCACATATGTGCCCCTATTTTTCCTTTGGTACCC
1 CTGATTGCACACA-GCGCCACTGTTTGTACTTCGATACCC
* * * *
30828973 CTAATTACACATA-CGTACCCCTGTTTGTACTTCGATACCC
1 CTGATTGCACACAGCG--CCACTGTTTGTACTTCGATACCC
* * * * * * *
30829013 CTAATTACACATACGTGGCC-CTATTTGTACTTTGGTACCC
1 CTGATTGCACACA-G-CGCCACTGTTTGTACTTCGATACCC
*
30829053 CTAATTGCACA
1 CTGATTGCACA
30829064 TACGTGCCCC
Statistics
Matches: 141, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
38 13 0.09
40 125 0.89
41 2 0.01
43 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.34
Consensus pattern (39 bp):
CTGATTGCACACAGCGCCACTGTTTGTACTTCGATACCC
Found at i:30828915 original size:20 final size:20
Alignment explanation
Indices: 30828890--30828954 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
30828880 TACTTCGATA
30828890 CCCCTGATTGCACATATGTG
1 CCCCTGATTGCACATATGTG
* * * ** *
30828910 CCCCTGTTTGTACTTCGGTA
1 CCCCTGATTGCACATATGTG
* *
30828930 CCCTTAATTGCACATATGTG
1 CCCCTGATTGCACATATGTG
30828950 CCCCT
1 CCCCT
30828955 ATTTTTCCTT
Statistics
Matches: 30, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.34
Consensus pattern (20 bp):
CCCCTGATTGCACATATGTG
Found at i:30828923 original size:40 final size:40
Alignment explanation
Indices: 30828876--30829085 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
30828866 CACGCCACTG
* * * *
30828876 TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTG
1 TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
* *
30828916 TTTGTACTTCGGTACCCTTAATTGCACATATGTGCCCCTA
1 TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
* * * * * *
30828956 TTTTTCCTTTGGTACCCCTAATTACACATACGTACCCCTG
1 TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
* * *
30828996 TTTGTACTTCGATACCCCTAATTACACATACGTGGCCCTA
1 TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
*
30829036 TTTGTACTTTGGTACCCCTAATTGCACATACGTGCCCCTA
1 TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
*
30829076 TTTATACTTC
1 TTTGTACTTC
30829086 ATTAATTTCA
Statistics
Matches: 145, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (40 bp):
TTTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTA
Found at i:30828990 original size:20 final size:20
Alignment explanation
Indices: 30828967--30829075 Score: 76
Period size: 20 Copynumber: 5.5 Consensus size: 20
30828957 TTTTCCTTTG
*
30828967 GTACCCCTAATTACACATAC
1 GTACCCCTAATTGCACATAC
** * *
30828987 GTACCCCTGTTTGTAC-TTC
1 GTACCCCTAATTGCACATAC
*
30829006 GATACCCCTAATTACACATAC
1 G-TACCCCTAATTGCACATAC
** * * * **
30829027 GTGGCCCTATTTGTACTTTG
1 GTACCCCTAATTGCACATAC
30829047 GTACCCCTAATTGCACATAC
1 GTACCCCTAATTGCACATAC
*
30829067 GTGCCCCTA
1 GTACCCCTA
30829076 TTTATACTTC
Statistics
Matches: 61, Mismatches: 26, Indels: 4
0.67 0.29 0.04
Matches are distributed among these distances:
19 3 0.05
20 55 0.90
21 3 0.05
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.31
Consensus pattern (20 bp):
GTACCCCTAATTGCACATAC
Found at i:30831263 original size:30 final size:30
Alignment explanation
Indices: 30831227--30831283 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
30831217 TGAGCATTTT
* *
30831227 CACACGGGATGGACATACGCCCGTGTGAGC
1 CACACGGGATGGACACACGCCCATGTGAGC
*
30831257 CACACGGGCTGGACACACGCCCATGTG
1 CACACGGGATGGACACACGCCCATGTG
30831284 CCAGCTCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.23, C:0.33, G:0.32, T:0.12
Consensus pattern (30 bp):
CACACGGGATGGACACACGCCCATGTGAGC
Found at i:30841201 original size:28 final size:27
Alignment explanation
Indices: 30841087--30841266 Score: 209
Period size: 27 Copynumber: 6.6 Consensus size: 27
30841077 GTAAATTGTA
30841087 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* ** *
30841114 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
30841141 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
**
30841168 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
*
30841196 TAGCACTAAGTGTGCGAGTTTGATTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* * *
30841224 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGATTTGACTATG
*
30841251 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
30841267 GACTTAATAT
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 83 0.62
28 50 0.38
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:30843292 original size:26 final size:25
Alignment explanation
Indices: 30843263--30843331 Score: 86
Period size: 26 Copynumber: 2.8 Consensus size: 25
30843253 CAGACTCACT
30843263 TTAGCTCGTATGAGCTTACCTATATA
1 TTAGCTCGTATGAGCTTACCTAT-TA
* *
30843289 TTAGCTCGTAAGAGCTTA-CTATTC
1 TTAGCTCGTATGAGCTTACCTATTA
* *
30843313 TCAGCTCATATGAGCTTAC
1 TTAGCTCGTATGAGCTTAC
30843332 TGTTTCAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.43
25 4 0.11
26 17 0.46
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (25 bp):
TTAGCTCGTATGAGCTTACCTATTA
Found at i:30843343 original size:23 final size:23
Alignment explanation
Indices: 30843265--30843362 Score: 99
Period size: 23 Copynumber: 4.1 Consensus size: 23
30843255 GACTCACTTT
* *
30843265 AGCTCGTATGAGCTTACCTATATATT
1 AGCTCATATGAGCTTA-CTAT-T-TC
* *
30843291 AGCTCGTAAGAGCTTACTATTCTC
1 AGCTCATATGAGCTTACTATT-TC
*
30843315 AGCTCATATGAGCTTACTGTTTC
1 AGCTCATATGAGCTTACTATTTC
30843338 AGCTCAT-TAGAGCTTACTATTTC
1 AGCTCATAT-GAGCTTACTATTTC
30843361 AG
1 AG
30843363 GTTAATAGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
22 1 0.02
23 24 0.38
24 20 0.31
25 4 0.06
26 15 0.23
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTATTTC
Found at i:30843371 original size:23 final size:23
Alignment explanation
Indices: 30843299--30843376 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
30843289 TTAGCTCGTA
* *
30843299 AGAGCTTACTATTCTCA-GCTCAT
1 AGAGCTTACTATT-TCAGGTTAAT
* * * *
30843322 ATGAGCTTACTGTTTCAGCTCATT
1 A-GAGCTTACTATTTCAGGTTAAT
30843346 AGAGCTTACTATTTCAGGTTAAT
1 AGAGCTTACTATTTCAGGTTAAT
30843369 AGAGCTTA
1 AGAGCTTA
30843377 TTGTCCATCA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
23 30 0.70
24 13 0.30
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (23 bp):
AGAGCTTACTATTTCAGGTTAAT
Found at i:30845988 original size:43 final size:43
Alignment explanation
Indices: 30845926--30846071 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
30845916 ACCGAGATGA
* * *
30845926 GATTACAGGTAAGACCATGTCTGGGACATTGGCTTCATTATGCT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCATTAT-AT
*
30845970 -ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCATTATAT
* * * * * *
30846012 GATTTCGTGTAAGACC-TGTCTGGGACAGTGGTATTGA-TATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCA-TCATTATAT
*
30846054 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
30846072 ATTTGGGATA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 33 0.39
43 52 0.61
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCATTATAT
Found at i:30847579 original size:24 final size:24
Alignment explanation
Indices: 30847528--30847844 Score: 474
Period size: 24 Copynumber: 13.0 Consensus size: 24
30847518 GCTTTATCAT
*
30847528 ATAACTGGAGGCGT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
30847553 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
30847577 ATAACTGGGGGATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
30847601 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
30847625 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
30847650 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
30847675 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
30847700 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
30847724 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
30847748 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
30847772 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
30847796 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
30847821 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
30847845 CACTTCCTCC
Statistics
Matches: 272, Mismatches: 17, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
24 167 0.61
25 105 0.39
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:30847918 original size:20 final size:20
Alignment explanation
Indices: 30847893--30847959 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
30847883 TTATGAATAC
30847893 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
30847913 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
30847933 GTCATGTGCAAATCATACAT
1 ATCATGTGCATATCATACAT
*
30847953 ACCATGT
1 ATCATGT
30847960 TTATCAAAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:30848017 original size:26 final size:25
Alignment explanation
Indices: 30847988--30848042 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
30847978 TCAAATTCAT
* *
30847988 ATTTAAACCCTAGGGGTATAATGGTC
1 ATTTAAA-CCTAGGGGCAAAATGGTC
**
30848014 ATTTTTACCTAGGGGCAAAATGGTC
1 ATTTAAACCTAGGGGCAAAATGGTC
30848039 ATTT
1 ATTT
30848043 TCATTTTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (25 bp):
ATTTAAACCTAGGGGCAAAATGGTC
Found at i:30848035 original size:25 final size:25
Alignment explanation
Indices: 30847996--30848043 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
30847986 ATATTTAAAC
* *
30847996 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
30848021 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
30848044 CATTTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:30849235 original size:27 final size:27
Alignment explanation
Indices: 30849205--30849269 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
30849195 GGGCGTATTC
30849205 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
30849232 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
30849259 GTCTTTTTACC
1 GTCATTTTACC
30849270 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:30849353 original size:27 final size:27
Alignment explanation
Indices: 30849323--30849634 Score: 116
Period size: 27 Copynumber: 11.4 Consensus size: 27
30849313 GTAAATCTAA
30849323 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
30849350 AAACCAAAATGGTATTTCCA-TAATTTT-T
1 AAACC--AAGGGTATTT-TAGTAATTTTGT
* *
30849378 AGAAAGTCAAGGGTATTTCT-GTAACTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
* * * **
30849408 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *** ** ***
30849435 GAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* **
30849462 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * **
30849489 AAA-CTAGTGATATTTTAGCAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * *
30849516 AGA-CTAGGGTATTTTGGTAATTTTACT
1 AAACCAAGGGTATTTTAGTAATTTT-GT
* * *
30849543 AATCGAA-GGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
30849569 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * ****
30849596 AAATCGAGGGTAAAACAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
30849623 AAATCGAGGGTA
1 AAACCAAGGGTA
30849635 AAACAGTAAT
Statistics
Matches: 227, Mismatches: 44, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
26 24 0.11
27 160 0.70
28 5 0.02
29 32 0.14
30 5 0.02
31 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:30849619 original size:107 final size:107
Alignment explanation
Indices: 30849415--30849620 Score: 227
Period size: 107 Copynumber: 1.9 Consensus size: 107
30849405 TGTAAATCAG
* * *
30849415 GGGTATTTTGGTAATTTTACGAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACGAATCGAAGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTAG
* ****
30849480 TAATTTTACAAACTAGTGATATTTTAGCAATTTTACAGACTA
66 TAATTTTACAAACGAGTGATAAAACAGCAATTTTACAGACTA
* * ***
30849522 GGGTATTTTGGTAATTTTACTAATCGAAGGTATTTTGGTAATTTTGTAAACCAAG-GGTATTTTA
1 GGGTATTTTGGTAATTTTACGAATCGAAGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTA
** * *
30849586 GTAATTTTGTAAATCGAG-GGTAAAACAGTAATTTT
65 GTAATTTTACAAA-CGAGTGATAAAACAGCAATTTT
30849621 GTAAATCGAG
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
107 75 0.94
108 5 0.06
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (107 bp):
GGGTATTTTGGTAATTTTACGAATCGAAGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTAG
TAATTTTACAAACGAGTGATAAAACAGCAATTTTACAGACTA
Found at i:30849635 original size:27 final size:27
Alignment explanation
Indices: 30849585--30849742 Score: 244
Period size: 27 Copynumber: 5.9 Consensus size: 27
30849575 AGGGTATTTT
*
30849585 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
30849612 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
30849639 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
30849666 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
30849693 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
30849720 GGTAATTTTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
30849743 CTTTGGTAAT
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:30849660 original size:81 final size:81
Alignment explanation
Indices: 30849575--30849755 Score: 263
Period size: 81 Copynumber: 2.2 Consensus size: 81
30849565 TTGTAAACCA
* * *
30849575 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACA
1 AGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACA
30849640 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
*** * * *
30849656 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 AGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACA
*
30849721 GTAATTTTATAAATCG
66 GTAATTCTATAAATCG
*
30849737 AGGGTACTTTGGTAATTTT
1 AGGGTAATTTGGTAATTTT
30849756 ACAATTTGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACA
GTAATTCTATAAATCG
Done.