Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 99 of 332
Found at i:31910829 original size:23 final size:23
Alignment explanation
Indices: 31910799--31910846 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
31910789 TTATCTTTAA
31910799 GTACCATTTAGTCAATAATGCTT
1 GTACCATTTAGTCAATAATGCTT
31910822 GTACCATTTAGTCAATAATGCTT
1 GTACCATTTAGTCAATAATGCTT
31910845 GT
1 GT
31910847 TTATTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (23 bp):
GTACCATTTAGTCAATAATGCTT
Found at i:31914971 original size:21 final size:21
Alignment explanation
Indices: 31914936--31915013 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
31914926 GTTAACTCAT
31914936 ATGAGTTTTCT-TTTAACCCTA
1 ATGAG-TTTCTGTTTAACCCTA
* * *
31914957 ATGAGTTTCTGTTTAGCTCTT
1 ATGAGTTTCTGTTTAACCCTA
* * *
31914978 TTGAGTTAT-AGTTTAACCCTC
1 ATGAGTT-TCTGTTTAACCCTA
*
31914999 ATGGGTTTCTGTTTA
1 ATGAGTTTCTGTTTA
31915014 GCTCTTATAA
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
20 6 0.14
21 36 0.84
22 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (21 bp):
ATGAGTTTCTGTTTAACCCTA
Found at i:31915038 original size:42 final size:42
Alignment explanation
Indices: 31914950--31915063 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
31914940 GTTTTCTTTT
* * * *
31914950 AACCCTAATGAGTTTCTGTTTAGCTCTTTTGAGTTATAGTTT
1 AACCCTAATGGGTTTCTGTTTAGCTCTTATAAGTTATAGTTC
* *
31914992 AACCCTCATGGGTTTCTGTTTAGCTCTTATAAGCTT-TTGTTC
1 AACCCTAATGGGTTTCTGTTTAGCTCTTATAAG-TTATAGTTC
* * *
31915034 AACCCTTATGGGTTTCAGTTTAGCACTTAT
1 AACCCTAATGGGTTTCTGTTTAGCTCTTAT
31915064 GTGCTTCCGT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 60 0.97
43 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.17, T:0.45
Consensus pattern (42 bp):
AACCCTAATGGGTTTCTGTTTAGCTCTTATAAGTTATAGTTC
Found at i:31923607 original size:42 final size:42
Alignment explanation
Indices: 31923537--31923731 Score: 167
Period size: 42 Copynumber: 4.5 Consensus size: 42
31923527 CAATGTTATG
* * ** * *
31923537 TCCCAGACATGGTCTTACATGGGATCTCACATCGATGCCATA
1 TCCCAGATATGGTCTTACACGAAATCTCATATCGACGCCATA
* * * * *
31923579 TCCCAAATATGGTCTTATACGAATTCTCATTTCGACGCCATG
1 TCCCAGATATGGTCTTACACGAAATCTCATATCGACGCCATA
* * *
31923621 TCCCAGATATGGTCTTACATGAAATATCATATCAACGCCATA
1 TCCCAGATATGGTCTTACACGAAATCTCATATCGACGCCATA
* * *
31923663 TCCCAGATATGGTCTTACATGATAA-CTCATACTAATGCTATGCCATA
1 TCCCAGATATGGTCTTACACGA-AATCTC--A-T-AT-CGACGCCATA
*
31923710 TCCCAGATATGGTCTTATACGA
1 TCCCAGATATGGTCTTACACGA
31923732 GATCCCATCA
Statistics
Matches: 123, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
42 89 0.72
43 2 0.02
44 1 0.01
45 1 0.01
46 2 0.02
47 28 0.23
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACACGAAATCTCATATCGACGCCATA
Found at i:31931988 original size:46 final size:44
Alignment explanation
Indices: 31931884--31931991 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
31931874 TGTCTTTGAC
** * * *
31931884 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
31931928 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
31931974 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
31931992 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:31934440 original size:20 final size:20
Alignment explanation
Indices: 31934342--31934442 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
31934332 ATAAATGCGT
*
31934342 AACAGAGGCACCAAAGTGTA
1 AACAGAGGCACCAAAGTGCA
* *
31934362 GACAGAGGCA-CAAATGTGCT
1 AACAGAGGCACCAAA-GTGCA
* *** **
31934382 ATCAGAGGCACTGTAGTGTG
1 AACAGAGGCACCAAAGTGCA
* *
31934402 AATAGAGACACCAAAGTGCA
1 AACAGAGGCACCAAAGTGCA
*
31934422 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCAAAGTGCA
31934442 A
1 A
31934443 TCCGTAGCAC
Statistics
Matches: 58, Mismatches: 21, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
19 4 0.07
20 53 0.91
21 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.13
Consensus pattern (20 bp):
AACAGAGGCACCAAAGTGCA
Found at i:31940262 original size:45 final size:45
Alignment explanation
Indices: 31940211--31940314 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
31940201 ATAAACCACC
* ** *
31940211 ATGTAGGTTGTGGACAAAACTAACAATATTTGC-AGACAAGCTGCA
1 ATGTAGGTTGTGGACAAAACCAACAATATTCACAAG-CAAGCTACA
* * *
31940256 ATGTAGGTTGTGGACAAAGCCACCAATATTCACAAGCAAGCTACC
1 ATGTAGGTTGTGGACAAAACCAACAATATTCACAAGCAAGCTACA
31940301 ATGTAGGTTGTGGA
1 ATGTAGGTTGTGGA
31940315 TAAACCACCA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 49 0.96
46 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (45 bp):
ATGTAGGTTGTGGACAAAACCAACAATATTCACAAGCAAGCTACA
Found at i:31940377 original size:113 final size:113
Alignment explanation
Indices: 31940179--31940391 Score: 320
Period size: 113 Copynumber: 1.9 Consensus size: 113
31940169 CCAACACAGA
* *
31940179 CAAGCTGCCATATAGGTTGTGGATAAACCACCATGTAGGTTGTGGACAAAACTAACAATATTTGC
1 CAAGCTACCATATAGGTTGTGGATAAACCACCATGTAGGTTGTGGACAAAACGAACAATATTTGC
31940244 AGACAAGCTGCAATGTAGGTTGTGGACAAAGCCACCAATATTCACAAG
66 AGACAAGCTGCAATGTAGGTTGTGGACAAAGCCACCAATATTCACAAG
* * * *
31940292 CAAGCTACCATGTAGGTTGTGGATAAACCACCATG-ATGGTTGTGGACGAAGCGACCAATATTTG
1 CAAGCTACCATATAGGTTGTGGATAAACCACCATGTA-GGTTGTGGACAAAACGAACAATATTTG
* * * *
31940356 TAGATAAGCTGCTATGTAGGTTGTGGACGAAGCCAC
65 CAGACAAGCTGCAATGTAGGTTGTGGACAAAGCCAC
31940392 AAATTCTTCC
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
112 1 0.01
113 88 0.99
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (113 bp):
CAAGCTACCATATAGGTTGTGGATAAACCACCATGTAGGTTGTGGACAAAACGAACAATATTTGC
AGACAAGCTGCAATGTAGGTTGTGGACAAAGCCACCAATATTCACAAG
Found at i:31948263 original size:15 final size:16
Alignment explanation
Indices: 31948243--31948272 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31948233 CGAATAGCAT
31948243 TGTAC-TTGCTCACAA
1 TGTACTTTGCTCACAA
31948258 TGTACTTTGCTCACA
1 TGTACTTTGCTCACA
31948273 TAACATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (16 bp):
TGTACTTTGCTCACAA
Found at i:31954884 original size:3 final size:3
Alignment explanation
Indices: 31954876--31954932 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
31954866 AACTAAAACG
31954876 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
31954924 TAA TAA TAA
1 TAA TAA TAA
31954933 CTATAACTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:31958181 original size:16 final size:14
Alignment explanation
Indices: 31958162--31958203 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 14
31958152 AAGTCTTAAG
31958162 AAAAATAAATAAAA
1 AAAAATAAATAAAA
31958176 CAAAAATAAAATAAAA
1 -AAAAAT-AAATAAAA
31958192 TAAAAATAAATA
1 -AAAAATAAATA
31958204 GACTCAGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAATAAAA
Found at i:31960842 original size:38 final size:38
Alignment explanation
Indices: 31960791--31960867 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
31960781 TGGGCTCTGG
31960791 CCCAAATGTCTTACCCGAAGCCTAACCTATTTTTAAAA
1 CCCAAATGTCTTACCCGAAGCCTAACCTATTTTTAAAA
31960829 CCCAAATGTCTTACCCGAAGCCTAACCTATTTTTAAAA
1 CCCAAATGTCTTACCCGAAGCCTAACCTATTTTTAAAA
31960867 C
1 C
31960868 AGGCCTTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.29
Consensus pattern (38 bp):
CCCAAATGTCTTACCCGAAGCCTAACCTATTTTTAAAA
Found at i:31962411 original size:3 final size:3
Alignment explanation
Indices: 31962403--31962447 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
31962393 AGTATCTCCA
*
31962403 CTT CTT CTT CTT CTT CCT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
31962448 GGTTTGTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:31963212 original size:20 final size:21
Alignment explanation
Indices: 31963177--31963216 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
31963167 GTGTTTTATT
31963177 TAATTTATAAAAATAAAAATA
1 TAATTTATAAAAATAAAAATA
*
31963198 TAATTT-TATAAATAAAAAT
1 TAATTTATAAAAATAAAAAT
31963217 TCATTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATTTATAAAAATAAAAATA
Found at i:31966723 original size:34 final size:35
Alignment explanation
Indices: 31966685--31966785 Score: 159
Period size: 35 Copynumber: 2.9 Consensus size: 35
31966675 AATATTCACC
* * *
31966685 AAAATGAAACAAAAATGATAAGGCTTAAAATTA-A
1 AAAATGAAACAAAAATAATAAGACTTAAAACTACA
31966719 AAAATGAAACAAAAATAATAAGACTTAAAACTACA
1 AAAATGAAACAAAAATAATAAGACTTAAAACTACA
*
31966754 AAAATGAAACAAAAATAATAAGATTTAAAACT
1 AAAATGAAACAAAAATAATAAGACTTAAAACT
31966786 CTAACAACAG
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
34 30 0.48
35 32 0.52
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (35 bp):
AAAATGAAACAAAAATAATAAGACTTAAAACTACA
Found at i:31966764 original size:35 final size:34
Alignment explanation
Indices: 31966685--31966845 Score: 157
Period size: 34 Copynumber: 4.7 Consensus size: 34
31966675 AATATTCACC
* * *
31966685 AAAATGAAACAAAAATGATAAGGCTTAAAATTAA
1 AAAATGAAACAAAAATAATAAGACTTAAAACTAA
31966719 AAAATGAAACAAAAATAATAAGACTTAAAACTACA
1 AAAATGAAACAAAAATAATAAGACTTAAAACTA-A
*
31966754 AAAATGAAACAAAAATAATAAGATTTAAAACTCTAA
1 AAAATGAAACAAAAATAATAAGACTTAAAA--CTAA
* **** *
31966790 CAACA-GAAACACTGCTATTAAGACTTAAAACTAA
1 -AAAATGAAACAAAAATAATAAGACTTAAAACTAA
* *
31966824 AAAATG-GA-AAAAATTATAAGAC
1 AAAATGAAACAAAAATAATAAGAC
31966846 CTATAATTAA
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
32 8 0.08
33 4 0.04
34 35 0.34
35 30 0.29
36 20 0.19
37 6 0.06
ACGTcount: A:0.61, C:0.11, G:0.09, T:0.20
Consensus pattern (34 bp):
AAAATGAAACAAAAATAATAAGACTTAAAACTAA
Found at i:31966895 original size:40 final size:40
Alignment explanation
Indices: 31966832--31966918 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
31966822 AAAAAATGGA
* *
31966832 AAAAATTATAAGACCTATAATTAATAATACAAAAGATTCAC
1 AAAAA-TATAAAACCTATAATTAACAATACAAAAGATTCAC
* * * * *
31966873 AAAAATATAAAACTTATTATTAACACTACAAAATATTTAC
1 AAAAATATAAAACCTATAATTAACAATACAAAAGATTCAC
31966913 AAAAAT
1 AAAAAT
31966919 TCAAATAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 34 0.87
41 5 0.13
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.29
Consensus pattern (40 bp):
AAAAATATAAAACCTATAATTAACAATACAAAAGATTCAC
Found at i:31985581 original size:13 final size:14
Alignment explanation
Indices: 31985565--31985593 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
31985555 ATCAAAATTA
31985565 AAATTTTAAA-TAT
1 AAATTTTAAACTAT
31985578 AAATTTTAAACTAT
1 AAATTTTAAACTAT
31985592 AA
1 AA
31985594 TTAGAGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTTTAAACTAT
Found at i:31987809 original size:17 final size:17
Alignment explanation
Indices: 31987787--31987822 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
31987777 ATCTATTCAC
*
31987787 CAAAAGATACAATTGTT
1 CAAAAGATACAACTGTT
31987804 CAAAAGATACAACTGTT
1 CAAAAGATACAACTGTT
31987821 CA
1 CA
31987823 TCAAGAGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (17 bp):
CAAAAGATACAACTGTT
Found at i:31991690 original size:18 final size:18
Alignment explanation
Indices: 31991659--31991703 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
31991649 GTCAATCATT
31991659 TATTCAGTAACAGTCAAA
1 TATTCAGTAACAGTCAAA
* * *
31991677 TATTCGGTAGCAGTCAAT
1 TATTCAGTAACAGTCAAA
*
31991695 TTTTCAGTA
1 TATTCAGTA
31991704 CGTTTATTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (18 bp):
TATTCAGTAACAGTCAAA
Found at i:31992407 original size:10 final size:10
Alignment explanation
Indices: 31992389--31992429 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
31992379 CAAAATCTCA
31992389 TTTTT-TTTC
1 TTTTTCTTTC
31992398 TTTTTCTTTC
1 TTTTTCTTTC
*
31992408 -TTTCCTTTC
1 TTTTTCTTTC
*
31992417 TTTTTCCTTC
1 TTTTTCTTTC
31992427 TTT
1 TTT
31992430 CCTTCCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 13 0.48
10 14 0.52
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:31992418 original size:19 final size:19
Alignment explanation
Indices: 31992394--31992433 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
31992384 TCTCATTTTT
*
31992394 TTTCTTTTTCTTTCTTTCC
1 TTTCTTTTTCCTTCTTTCC
31992413 TTTCTTTTTCCTTCTTTCC
1 TTTCTTTTTCCTTCTTTCC
31992432 TT
1 TT
31992434 CCCTTGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCTTTTTCCTTCTTTCC
Found at i:31992502 original size:16 final size:17
Alignment explanation
Indices: 31992481--31992513 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
31992471 TCTTTTTCTT
*
31992481 TTCTTTTGTTTC-TTTA
1 TTCTTTTATTTCATTTA
31992497 TTCTTTTATTTCATTTA
1 TTCTTTTATTTCATTTA
31992514 CTTTATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.73
Consensus pattern (17 bp):
TTCTTTTATTTCATTTA
Found at i:31997726 original size:18 final size:18
Alignment explanation
Indices: 31997695--31997739 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
31997685 GTCAATCATT
31997695 TATTCAGTAACAGTCAAA
1 TATTCAGTAACAGTCAAA
* * *
31997713 TATTCGGTAGCAGTCAAT
1 TATTCAGTAACAGTCAAA
*
31997731 TTTTCAGTA
1 TATTCAGTA
31997740 CCTTTATTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (18 bp):
TATTCAGTAACAGTCAAA
Found at i:31998453 original size:19 final size:19
Alignment explanation
Indices: 31998429--31998468 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
31998419 ATCTCAATTT
*
31998429 TTTCTTTTTCTTTCTTTCC
1 TTTCTTTTTCCTTCTTTCC
31998448 TTTCTTTTTCCTTCTTTCC
1 TTTCTTTTTCCTTCTTTCC
31998467 TT
1 TT
31998469 CCCTTGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCTTTTTCCTTCTTTCC
Found at i:31998537 original size:16 final size:17
Alignment explanation
Indices: 31998516--31998548 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
31998506 TCTTTTTCTT
*
31998516 TTCTTTTGTTTC-TTTA
1 TTCTTTTATTTCATTTA
31998532 TTCTTTTATTTCATTTA
1 TTCTTTTATTTCATTTA
31998549 CTTTATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.73
Consensus pattern (17 bp):
TTCTTTTATTTCATTTA
Found at i:32005913 original size:52 final size:53
Alignment explanation
Indices: 32005848--32005960 Score: 147
Period size: 53 Copynumber: 2.2 Consensus size: 53
32005838 ACATGCCTGC
* ** * *
32005848 TATTCAGTTCAATATGCTAAGCTAA-GACAACTATAGGAACATGAAAACCCGT
1 TATTCAGTACAATACACTAAACTAACGAAAACTATAGGAACATGAAAACCCGT
* *
32005900 TATTCAGTACAATACACTAAATTAACGAAAACTATAGGAACATGAAAACCGGT
1 TATTCAGTACAATACACTAAACTAACGAAAACTATAGGAACATGAAAACCCGT
*
32005953 TGTTCAGT
1 TATTCAGT
32005961 TTGATACACC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 20 0.38
53 32 0.62
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.26
Consensus pattern (53 bp):
TATTCAGTACAATACACTAAACTAACGAAAACTATAGGAACATGAAAACCCGT
Found at i:32013992 original size:3 final size:3
Alignment explanation
Indices: 32013963--32014119 Score: 56
Period size: 3 Copynumber: 52.0 Consensus size: 3
32013953 CAATATGACG
* * * * *
32013963 ATA ATA GTA AAA ATA AT- ATA TTAA ATA ATA GTA ATA A-A AGTA ATG
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA
* * * *
32014008 CTA ATA ATA ATA ATA ATA ATA AT- CTA TTA AGTT ATA ATGA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA AT-A ATA ATA
* * * * *
32014053 ATG ATA ATG ATG AT- ATA TTA GATA ATA ATA GTA A-A ATA ATA AGTA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA A-TA
* * *
32014098 ACA ATG ATAA ATT ATA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA
32014120 GTGATGAGAA
Statistics
Matches: 111, Mismatches: 30, Indels: 26
0.66 0.18 0.16
Matches are distributed among these distances:
2 11 0.10
3 85 0.77
4 15 0.14
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32014140 original size:16 final size:16
Alignment explanation
Indices: 32014119--32014150 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32014109 TTATAATAAT
32014119 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
32014135 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
32014151 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:32014277 original size:16 final size:16
Alignment explanation
Indices: 32014252--32014297 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
32014242 TATATACGTA
*
32014252 TAAAAAATAATGATAG
1 TAAAATATAATGATAG
*
32014268 TAAAATATAATAATAG
1 TAAAATATAATGATAG
32014284 TAATAATAATAATG
1 TAA-AAT-ATAATG
32014298 GAATGAAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 17 0.68
17 3 0.12
18 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (16 bp):
TAAAATATAATGATAG
Found at i:32014402 original size:3 final size:3
Alignment explanation
Indices: 32014394--32014432 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
32014384 CTACCATATT
32014394 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32014433 TAGAAATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32014542 original size:3 final size:3
Alignment explanation
Indices: 32014528--32014564 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
32014518 AAATATACAC
32014528 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32014565 ATAAAATGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:32030384 original size:39 final size:40
Alignment explanation
Indices: 32030339--32030563 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
32030329 GCTCCTCGTT
* * * *
32030339 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
32030379 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
32030418 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
32030458 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
32030498 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
32030539 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
32030564 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:32030572 original size:41 final size:41
Alignment explanation
Indices: 32030495--32030572 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32030485 CTTGTATCTC
* * *
32030495 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32030536 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32030573 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32037317 original size:208 final size:208
Alignment explanation
Indices: 32036957--32037362 Score: 559
Period size: 208 Copynumber: 1.9 Consensus size: 208
32036947 AGCTTTATTC
* *
32036957 TTGTTCTCCAATATGAGTAGTTGGTGCCATTGAATAAAGAAGGCTTCAAGGTGGAATGCCCTTCT
1 TTGTTCTCCAATATGAGTAGTTGGTGCCATTGAATAAAGAAGGCCTCAAGATGGAAT--CCTTCT
* * * * *
32037022 CCAATGTCATGAAGCAAATTTCTTGACTTATGGTTTCCATCTTGATATCTCGAGGATCTTCTCTC
64 CCAATGTCATGAAACAAATTTCTTGAATTATGGCTTACATCTTGATATCTCGAAGATCTTCTCTC
*** *
32037087 TTGGTGGTAAAACTGTCTCTAGAGTTCTAGCTTTGATACCAATTATTAAGATCGAAATACACCAA
129 TTGGTGGTAAAACTGTCTCTAGAGTTCTAGCTCCAATACCAATTATTAAGATCAAAATACACCAA
32037152 GAGAGGGGTAAATTT
194 GAGAGGGGTAAATTT
* * * *
32037167 TTGTTCTCTAATATGAGTAGTTGGTGTCATTGAATAAATG-AGGCCTCATGATGGAAT-TTTGCT
1 TTGTTCTCCAATATGAGTAGTTGGTGCCATTGAATAAA-GAAGGCCTCAAGATGGAATCCTT-CT
* *
32037230 CCAATG-CAATGAAACAAATTTCTTGAATTATGGCTTACATCTTGATATCTTGAATATCTTCTCT
64 CCAATGTC-ATGAAACAAATTTCTTGAATTATGGCTTACATCTTGATATCTCGAAGATCTTCTCT
* *
32037294 CTTGGTGGTAAAA-TCGTCTCTAGAGTTCTAGCTCCAATACCAATTGTTAAGATTAAAATACACC
128 CTTGGTGGTAAAACT-GTCTCTAGAGTTCTAGCTCCAATACCAATTATTAAGATCAAAATACACC
32037358 AAGAG
192 AAGAG
32037363 GTGGCGAATT
Statistics
Matches: 173, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
207 4 0.02
208 118 0.68
210 50 0.29
211 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (208 bp):
TTGTTCTCCAATATGAGTAGTTGGTGCCATTGAATAAAGAAGGCCTCAAGATGGAATCCTTCTCC
AATGTCATGAAACAAATTTCTTGAATTATGGCTTACATCTTGATATCTCGAAGATCTTCTCTCTT
GGTGGTAAAACTGTCTCTAGAGTTCTAGCTCCAATACCAATTATTAAGATCAAAATACACCAAGA
GAGGGGTAAATTT
Found at i:32051512 original size:18 final size:18
Alignment explanation
Indices: 32051489--32051539 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
32051479 CGTTTACAGT
*
32051489 ACTATTTACGTATACGGC
1 ACTATTCACGTATACGGC
*
32051507 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
32051525 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
32051540 AGTAGTTGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:32058542 original size:40 final size:40
Alignment explanation
Indices: 32058482--32058585 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
32058472 TTGGCTCGGA
* * *
32058482 TATAACAACCAGCACGAATGCCTTCGAGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGAGACTTAACCCGAT
* * *
32058522 TATAATTACCCGCACAAATGCCTTCGGGACTTAACCCGAT
1 TATAATAACCCGCACGAATGCCTTCGAGACTTAACCCGAT
32058562 TATAATAACCCGCACGAATGCCTT
1 TATAATAACCCGCACGAATGCCTT
32058586 GCACATATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGAGACTTAACCCGAT
Found at i:32061695 original size:26 final size:26
Alignment explanation
Indices: 32061664--32061771 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32061654 TGAAATGCCC
*
32061664 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
32061690 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32061716 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32061742 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32061768 ATCA
1 ATCA
32061772 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32065168 original size:26 final size:24
Alignment explanation
Indices: 32065136--32065197 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
32065126 TTAGTCTCCA
32065136 ACTAACTAAGTACAGTTTTAGAAAGT
1 ACTAACTAAGT--AGTTTTAGAAAGT
*
32065162 ACTAACTATAGTATTTTTAGAAAGT
1 ACTAACTA-AGTAGTTTTAGAAAGT
* *
32065187 TCTATCTAAGT
1 ACTAACTAAGT
32065198 TCAGAAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 3 0.09
25 18 0.56
26 8 0.25
27 3 0.09
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (24 bp):
ACTAACTAAGTAGTTTTAGAAAGT
Found at i:32066066 original size:13 final size:13
Alignment explanation
Indices: 32066048--32066075 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32066038 CACCCTAAAC
32066048 ACAGATACAGAAT
1 ACAGATACAGAAT
32066061 ACAGATACAGAAT
1 ACAGATACAGAAT
32066074 AC
1 AC
32066076 GGAAATAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.18, G:0.14, T:0.14
Consensus pattern (13 bp):
ACAGATACAGAAT
Found at i:32072645 original size:14 final size:14
Alignment explanation
Indices: 32072626--32072658 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
32072616 TGATAGGAAA
32072626 TTAGAAAATACTCT
1 TTAGAAAATACTCT
32072640 TTAGAAAATACTCT
1 TTAGAAAATACTCT
32072654 TTAGA
1 TTAGA
32072659 TAGAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (14 bp):
TTAGAAAATACTCT
Found at i:32073296 original size:18 final size:20
Alignment explanation
Indices: 32073273--32073319 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
32073263 GGACCCAATT
32073273 GAAGGAAAA-AG-GAAAAGA
1 GAAGGAAAAGAGTGAAAAGA
*
32073291 GAAGGACAAAGAGTGAGAAGA
1 GAAGGA-AAAGAGTGAAAAGA
32073312 GAA-GAAAA
1 GAAGGAAAA
32073320 TATTTCATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 6 0.24
19 6 0.24
20 4 0.16
21 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.34, T:0.02
Consensus pattern (20 bp):
GAAGGAAAAGAGTGAAAAGA
Found at i:32075535 original size:22 final size:22
Alignment explanation
Indices: 32075509--32075576 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
32075499 TATAAATTAA
*
32075509 ATAAAGTAAAAAGAAATAAAGC
1 ATAAAGTAAAAAGAAACAAAGC
* * *
32075531 ATAAAATAAATAGAAACAAAAC
1 ATAAAGTAAAAAGAAACAAAGC
*
32075553 A-AAAG-AAAAAGGAAAGAAAGC
1 ATAAAGTAAAAA-GAAACAAAGC
32075574 ATA
1 ATA
32075577 GAAGCATTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.11
21 12 0.33
22 20 0.56
ACGTcount: A:0.71, C:0.06, G:0.13, T:0.10
Consensus pattern (22 bp):
ATAAAGTAAAAAGAAACAAAGC
Found at i:32075958 original size:23 final size:23
Alignment explanation
Indices: 32075928--32075972 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32075918 TGAATTGAAA
32075928 ATTGATTGAAAA-GTGAAAAATG
1 ATTGATTGAAAATGTGAAAAATG
*
32075950 ATTGAATTGAAAATGTGAGAAAT
1 ATTG-ATTGAAAATGTGAAAAAT
32075973 TGTGACTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (23 bp):
ATTGATTGAAAATGTGAAAAATG
Found at i:32076151 original size:22 final size:23
Alignment explanation
Indices: 32076096--32076159 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
32076086 GCCGATCAAA
32076096 CACTTTATGTGTCGTATATCAGG
1 CACTTTATGTGTCGTATATCAGG
*
32076119 CACTTTATGTGTCGTATTTCAGG
1 CACTTTATGTGTCGTATATCAGG
*
32076142 CAC-TTATGTGTTGTATAT
1 CACTTTATGTGTCGTATAT
32076160 TGATCAGGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 13 0.34
23 25 0.66
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (23 bp):
CACTTTATGTGTCGTATATCAGG
Found at i:32085734 original size:23 final size:23
Alignment explanation
Indices: 32085685--32085801 Score: 117
Period size: 23 Copynumber: 4.6 Consensus size: 23
32085675 TTGTGCTATT
32085685 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-T-TA-TA
*
32085712 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGGA-T-TA---TA
*
32085742 CTGGTGTGTTTTGGAAGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
32085765 CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
32085788 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
32085802 TTGGACATTT
Statistics
Matches: 81, Mismatches: 5, Indels: 10
0.84 0.05 0.10
Matches are distributed among these distances:
23 38 0.47
26 2 0.02
27 1 0.01
28 24 0.30
29 14 0.17
30 2 0.02
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.45
Consensus pattern (23 bp):
CTGGTGTGTTTTGGAGGATTATA
Found at i:32085734 original size:28 final size:28
Alignment explanation
Indices: 32085681--32085787 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 28
32085671 CACTTTGTGC
32085681 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
32085710 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* * *
32085738 GATACTGGTGTGTTTTGGAAGA-T-TA-
1 TATTCTGGTGTGTTTTGGAGGATTATAT
32085763 TA--CTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
32085788 CTGGTGTGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
23 17 0.25
24 1 0.01
25 3 0.04
26 2 0.03
27 1 0.01
28 27 0.39
29 18 0.26
ACGTcount: A:0.20, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:32086029 original size:22 final size:23
Alignment explanation
Indices: 32085992--32086036 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
32085982 GCTTTACTGA
32085992 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
32086015 TCAGGCAC-TTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
32086037 CTGATCAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:32091482 original size:33 final size:32
Alignment explanation
Indices: 32091435--32091497 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
32091425 ACAATTGTAA
*
32091435 TATTTTATTTAAATT-AGTAGATATTTATTATT
1 TATTTTATTAAAATTAAG-AGATATTTATTATT
32091467 TATTATTATTAAAATTAAGAGATATTTATTA
1 TATT-TTATTAAAATTAAGAGATATTTATTA
32091498 ATTAAATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 22 0.79
34 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (32 bp):
TATTTTATTAAAATTAAGAGATATTTATTATT
Found at i:32091519 original size:33 final size:33
Alignment explanation
Indices: 32091439--32091519 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
32091429 TTGTAATATT
* * *
32091439 TTATTTAAATT-AGTAGATATTTATTATTTATTA
1 TTATTAAAATTAAG-AGATATTTATTATTAATAA
32091472 TTATTAAAATTAAGAGATATTTATTAATTAAATAA
1 TTATTAAAATTAAGAGATATTTATT-ATT-AATAA
32091507 TTA-TAAAA-TAAGA
1 TTATTAAAATTAAGA
32091520 TTTTTATGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 26 0.62
34 10 0.24
35 6 0.14
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (33 bp):
TTATTAAAATTAAGAGATATTTATTATTAATAA
Found at i:32092091 original size:23 final size:23
Alignment explanation
Indices: 32092061--32092105 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32092051 TGAATTAAAA
32092061 ATTGATTGAAAA-GTGAAAAATG
1 ATTGATTGAAAATGTGAAAAATG
*
32092083 ATTGAATTGAAAATGTGAGAAAT
1 ATTG-ATTGAAAATGTGAAAAAT
32092106 TGTGACTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (23 bp):
ATTGATTGAAAATGTGAAAAATG
Found at i:32099483 original size:10 final size:10
Alignment explanation
Indices: 32099465--32099500 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
32099455 AATTCCAAGT
32099465 TAAATAAAAA
1 TAAATAAAAA
32099475 TAAA-AAAAA
1 TAAATAAAAA
*
32099484 TAATTAAAAA
1 TAAATAAAAA
32099494 TAAATAA
1 TAAATAA
32099501 TTAAGATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:32099498 original size:14 final size:14
Alignment explanation
Indices: 32099466--32099504 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32099456 ATTCCAAGTT
32099466 AAATAAA-AA-TAA
1 AAATAAATAATTAA
32099478 AAA-AAATAATTAA
1 AAATAAATAATTAA
32099491 AAATAAATAATTAA
1 AAATAAATAATTAA
32099505 GATGAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.12
12 5 0.21
13 6 0.25
14 10 0.42
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAAATAATTAA
Found at i:32100649 original size:28 final size:28
Alignment explanation
Indices: 32100587--32100679 Score: 127
Period size: 28 Copynumber: 3.4 Consensus size: 28
32100577 CCACAATTTG
*
32100587 ATTCTCAATTTCTTGTTCTCGA-TTTTT
1 ATTCTCAATTGCTTGTTCTCGATTTTTT
*
32100614 ATTCTCAATTGCTTGTTCTCAATTTTTT
1 ATTCTCAATTGCTTGTTCTCGATTTTTT
*
32100642 ATTCTCAATTG-TTAATTCTCGATTTTTT
1 ATTCTCAATTGCTT-GTTCTCGATTTTTT
*
32100670 ATTCTAAATT
1 ATTCTCAATT
32100680 CCCAATTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
27 22 0.37
28 37 0.63
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.57
Consensus pattern (28 bp):
ATTCTCAATTGCTTGTTCTCGATTTTTT
Found at i:32100673 original size:14 final size:14
Alignment explanation
Indices: 32100587--32100679 Score: 89
Period size: 14 Copynumber: 6.7 Consensus size: 14
32100577 CCACAATTTG
*
32100587 ATTCTCAATTTCTT
1 ATTCTCAATTTTTT
* *
32100601 GTTCTCGA-TTTTT
1 ATTCTCAATTTTTT
**
32100614 ATTCTCAATTGCTT
1 ATTCTCAATTTTTT
*
32100628 GTTCTCAATTTTTT
1 ATTCTCAATTTTTT
* *
32100642 ATTCTCAATTGTTA
1 ATTCTCAATTTTTT
*
32100656 ATTCTCGATTTTTT
1 ATTCTCAATTTTTT
*
32100670 ATTCTAAATT
1 ATTCTCAATT
32100680 CCCAATTTTT
Statistics
Matches: 60, Mismatches: 18, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
13 10 0.17
14 50 0.83
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTCTCAATTTTTT
Found at i:32102393 original size:23 final size:22
Alignment explanation
Indices: 32102344--32102407 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
32102334 CCTGATCAGT
*
32102344 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
* *
32102366 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT-AA
*
32102388 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
32102408 GATCAGTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 15 0.44
22 4 0.12
23 15 0.44
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.16
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTAA
Found at i:32102408 original size:23 final size:23
Alignment explanation
Indices: 32102344--32102409 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
32102334 CCTGATCAGT
32102344 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
32102366 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
32102388 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
32102410 TCAGTAAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:32105591 original size:63 final size:63
Alignment explanation
Indices: 32105492--32105758 Score: 180
Period size: 63 Copynumber: 4.2 Consensus size: 63
32105482 ACAATACGTA
* * * * * * * * * * *
32105492 CAATCATTCCCTGCATCTACACATTCAAC-TTCAGTTTATTTTTCACATGTACTTTAGCACAGG
1 CAATCATTCCCTACATCAACACATACAGCAAT-AGTTTATTTTCCACAAGCACCTCAGCACACG
* *
32105555 CAATCATTCCCTACATCAATACATACAGCAATAGTTTATTTTCCACAAGCACCTCAGCACTCG
1 CAATCATTCCCTACATCAACACATACAGCAATAGTTTATTTTCCACAAGCACCTCAGCACACG
* ** * * * * *
32105618 CAATCATTCCCTACATCAACACATACAACACCAATTTATCTTCCACAAGCA-TTACTGCACGCG
1 CAATCATTCCCTACATCAACACATACAGCAATAGTTTATTTTCCACAAGCACCT-CAGCACACG
** * * * * * * * * * * *
32105681 CAATCATTTACTAC-TCTGACACATTCATCACTAATTTATTTTACATAAGAACCACAACACGCG
1 CAATCATTCCCTACATC-AACACATACAGCAATAGTTTATTTTCCACAAGCACCTCAGCACACG
32105744 CAATCATTCCCTACA
1 CAATCATTCCCTACA
32105759 CCAATACAGT
Statistics
Matches: 161, Mismatches: 38, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
62 3 0.02
63 157 0.98
64 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.07, T:0.29
Consensus pattern (63 bp):
CAATCATTCCCTACATCAACACATACAGCAATAGTTTATTTTCCACAAGCACCTCAGCACACG
Found at i:32105772 original size:63 final size:63
Alignment explanation
Indices: 32105554--32105815 Score: 220
Period size: 63 Copynumber: 4.2 Consensus size: 63
32105544 TTTAGCACAG
* * * ** * * * * *
32105554 GCAATCATTCCCTACATCAATACATACAGCAATAGTTTATTTTCCACAAGCACCTCAGCACTC
1 GCAATCATTCCCTACACCAACACATACATCACCAATTTATTTTACACAAGCACCACAACACGC
* * * * ** **
32105617 GCAATCATTCCCTACATCAACACATACAACACCAATTTATCTTCCACAAGCATTACTGCACGC
1 GCAATCATTCCCTACACCAACACATACATCACCAATTTATTTTACACAAGCACCACAACACGC
** * ** * * * *
32105680 GCAATCATTTACTACTCTGACACATTCATCACTAATTTATTTTACATAAGAACCACAACACGC
1 GCAATCATTCCCTACACCAACACATACATCACCAATTTATTTTACACAAGCACCACAACACGC
* * *
32105743 GCAATCATTCCCTACACCAATACAGT-CATCACCACTTTATTTTACATAAGCACCACAACACGC
1 GCAATCATTCCCTACACCAACACA-TACATCACCAATTTATTTTACACAAGCACCACAACACGC
**
32105806 AAAATCATTC
1 GCAATCATTC
32105816 ACTGCACTGA
Statistics
Matches: 159, Mismatches: 39, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
63 158 0.99
64 1 0.01
ACGTcount: A:0.35, C:0.32, G:0.06, T:0.26
Consensus pattern (63 bp):
GCAATCATTCCCTACACCAACACATACATCACCAATTTATTTTACACAAGCACCACAACACGC
Found at i:32105805 original size:126 final size:126
Alignment explanation
Indices: 32105589--32105828 Score: 266
Period size: 126 Copynumber: 1.9 Consensus size: 126
32105579 ACAGCAATAG
* * * * * *
32105589 TTTATTTTCCACAAGCACCTCAGCACTCGCAATCATTCCCTACATCAACACATACAACACCAATT
1 TTTATTTTACACAAGAACCACAACACGCGCAATCATTCCCTACACCAACACATACAACACCAATT
* ** ** ** * *
32105654 TATCTTCCACAAGCATTACTGCACGCGCAATCATTTACTACTCTGACACATTCATCACTAA
66 TATCTTACACAAGCACCACAACACGCAAAATCATTCACTACACTGACACATTCATCACTAA
* * * *
32105715 TTTATTTTACATAAGAACCACAACACGCGCAATCATTCCCTACACCAATACAGT-CATCACCACT
1 TTTATTTTACACAAGAACCACAACACGCGCAATCATTCCCTACACCAACACA-TACAACACCAAT
* * *
32105779 TTATTTTACATAAGCACCACAACACGCAAAATCATTCACTGCACTGACAC
65 TTATCTTACACAAGCACCACAACACGCAAAATCATTCACTACACTGACAC
32105829 CTTCTCCAGG
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
126 90 0.99
127 1 0.01
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.26
Consensus pattern (126 bp):
TTTATTTTACACAAGAACCACAACACGCGCAATCATTCCCTACACCAACACATACAACACCAATT
TATCTTACACAAGCACCACAACACGCAAAATCATTCACTACACTGACACATTCATCACTAA
Found at i:32111003 original size:14 final size:12
Alignment explanation
Indices: 32110976--32111051 Score: 61
Period size: 11 Copynumber: 6.2 Consensus size: 12
32110966 ATTCCAAAAA
*
32110976 TAATA-TTATTT
1 TAATATTTATAT
32110987 TAATATTTTAATAT
1 TAATA-TTT-ATAT
32111001 TAA-ATTTA-ATT
1 TAATATTTATA-T
32111012 TAATATTTATAT
1 TAATATTTATAT
32111024 TAATAGTATTATAT
1 TAATA-T-TTATAT
*
32111038 TAAT-TTAATAT
1 TAATATTTATAT
32111049 TAA
1 TAA
32111052 AGTGATTATC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
10 1 0.02
11 18 0.33
12 15 0.27
13 5 0.09
14 16 0.29
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (12 bp):
TAATATTTATAT
Found at i:32111024 original size:31 final size:31
Alignment explanation
Indices: 32110989--32111092 Score: 84
Period size: 31 Copynumber: 3.2 Consensus size: 31
32110979 TATTATTTTA
32110989 ATATTTTAATATTAAATTTAATTTAATATTT
1 ATATTTTAATATTAAATTTAATTTAATATTT
* * *
32111020 ATATTAATAGTATTATA-TTAATTTAATATTAAAGT
1 ATATT-TTAATATTAAATTTAATTTAATATT----T
* * *
32111055 GATTATCTTAATGTTAAATTTAATTTAATGTTT
1 -A-TATTTTAATATTAAATTTAATTTAATATTT
32111088 ATATT
1 ATATT
32111093 GTAGATAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
31 21 0.38
32 9 0.16
33 1 0.02
35 1 0.02
36 8 0.15
37 15 0.27
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (31 bp):
ATATTTTAATATTAAATTTAATTTAATATTT
Found at i:32111045 original size:5 final size:6
Alignment explanation
Indices: 32110976--32111051 Score: 52
Period size: 6 Copynumber: 12.5 Consensus size: 6
32110966 ATTCCAAAAA
* *
32110976 TAATAT T-ATTT TAATATTT TAATAT TAA-ATT TAAT-T TAATAT TTATAT
1 TAATAT TAATAT TAATA--T TAATAT TAATA-T TAATAT TAATAT TAATAT
*
32111024 TAATAGT ATTATAT TAAT-T TAATAT TAA
1 TAATA-T -TAATAT TAATAT TAATAT TAA
32111052 AGTGATTATC
Statistics
Matches: 55, Mismatches: 6, Indels: 18
0.70 0.08 0.23
Matches are distributed among these distances:
5 15 0.27
6 28 0.51
7 2 0.04
8 10 0.18
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (6 bp):
TAATAT
Found at i:32111049 original size:25 final size:25
Alignment explanation
Indices: 32111016--32111071 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
32111006 TTAATTTAAT
32111016 ATTT-ATATTAATAGT-ATTATATTA
1 ATTTAATATTAA-AGTGATTATATTA
*
32111040 ATTTAATATTAAAGTGATTATCTTA
1 ATTTAATATTAAAGTGATTATATTA
32111065 ATGTTAA
1 AT-TTAA
32111072 ATTTAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 17 0.61
26 4 0.14
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (25 bp):
ATTTAATATTAAAGTGATTATATTA
Found at i:32112236 original size:42 final size:43
Alignment explanation
Indices: 32112175--32112262 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 43
32112165 TTTTCGCTAT
*
32112175 AGAACATGACCTTTAGCGGCGC-TTCTCATAAAAACGCCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTC-CACAAAAACGCCACTAA
* *
32112218 AGAACATGA-CTTTAGCGGCGCTTTCCCCAAAAACGTCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCACAAAAACGCCACTAA
32112260 AGA
1 AGA
32112263 CCATATCAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
42 29 0.71
43 12 0.29
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.20
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTCCACAAAAACGCCACTAA
Found at i:32112770 original size:23 final size:23
Alignment explanation
Indices: 32112742--32112845 Score: 145
Period size: 23 Copynumber: 4.5 Consensus size: 23
32112732 CTACACAAAG
32112742 AACATTTAAACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
* *
32112765 AGCATTTAAATACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
*
32112788 AAAATTTAAACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
* * *
32112811 AATATCTACACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
*
32112834 AGCATTTAAACA
1 AACATTTAAACA
32112846 GCAGCAACCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (23 bp):
AACATTTAAACACTTCAATTTAC
Found at i:32116178 original size:21 final size:21
Alignment explanation
Indices: 32116154--32116198 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
32116144 GTCAATATAC
32116154 ATGACAATCTATTGGAAGAAG
1 ATGACAATCTATTGGAAGAAG
32116175 ATGACAATCTATTGGAAGAAG
1 ATGACAATCTATTGGAAGAAG
32116196 ATG
1 ATG
32116199 GAAGCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (21 bp):
ATGACAATCTATTGGAAGAAG
Found at i:32116963 original size:72 final size:73
Alignment explanation
Indices: 32116871--32117020 Score: 203
Period size: 72 Copynumber: 2.1 Consensus size: 73
32116861 TTCGGGTATA
* **
32116871 AAATAGAAGAACAGGTTGAGAAAGGCTGAGAAAAAAAAGGAAACTGGGAAAGAAAAGGGAA-TCG
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAAAAAAGGAAACTGGGAAAGAAAAGAAAATTCG
32116935 GGGGAGAG
66 GGGGAGAG
* * * * * * *
32116943 AAATAGAGGAATAGGCTGAGAATGGCTGAGAAAGAAAAGGAAATTGGGAAAGAAGAGAAAATTGG
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAAAAAAGGAAACTGGGAAAGAAAAGAAAATTCG
32117008 GGGGAGAG
66 GGGGAGAG
32117016 AAATA
1 AAATA
32117021 AAACGGTGTC
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
72 52 0.78
73 15 0.22
ACGTcount: A:0.49, C:0.04, G:0.36, T:0.11
Consensus pattern (73 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAAAAAAGGAAACTGGGAAAGAAAAGAAAATTCG
GGGGAGAG
Found at i:32116995 original size:18 final size:18
Alignment explanation
Indices: 32116972--32117008 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32116962 GAATGGCTGA
*
32116972 GAAAGAAAAGGAAATTGG
1 GAAAGAAAAGAAAATTGG
*
32116990 GAAAGAAGAGAAAATTGG
1 GAAAGAAAAGAAAATTGG
32117008 G
1 G
32117009 GGGAGAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.35, T:0.11
Consensus pattern (18 bp):
GAAAGAAAAGAAAATTGG
Found at i:32117542 original size:18 final size:17
Alignment explanation
Indices: 32117519--32117559 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
32117509 TTATCTCTTA
32117519 AATAATTTAAACTATATT
1 AATAATTTAAA-TATATT
*
32117537 AATAATTTTAATATATT
1 AATAATTTAAATATATT
32117554 AA-AATT
1 AATAATT
32117560 AATATTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATAATTTAAATATATT
Found at i:32117984 original size:14 final size:14
Alignment explanation
Indices: 32117929--32118125 Score: 69
Period size: 14 Copynumber: 13.9 Consensus size: 14
32117919 ACTAATTAAT
*
32117929 CTAAACCTTTAACC
1 CTAAACCTTAAACC
** *
32117943 CATATCCCATAAACC
1 C-TAAACCTTAAACC
* *
32117958 C-AAAACATAAACC
1 CTAAACCTTAAACC
*
32117971 ATAAACCTTAAACCC
1 CTAAACCTTAAA-CC
* * *
32117986 CTAACCCAT-ATCC
1 CTAAACCTTAAACC
** *
32117999 CATAAACCCAAAATC
1 C-TAAACCTTAAACC
* *
32118014 ATAAATCTTAAACCC
1 CTAAACCTTAAA-CC
*
32118029 CT-AACACTTAACCC
1 CTAAAC-CTTAAACC
*
32118043 CT-AACCTCTAACCC
1 CTAAACCT-TAAACC
32118057 CTAAACCTTAAACC
1 CTAAACCTTAAACC
* *
32118071 CCAACCCTTAAACC
1 CTAAACCTTAAACC
* * * *
32118085 ATAAATCATAATCC
1 CTAAACCTTAAACC
* *
32118099 CTAAACCCATAATCC
1 CTAAA-CCTTAAACC
*
32118114 ATAAACCTTAAA
1 CTAAACCTTAAA
32118126 ATAGTAAATC
Statistics
Matches: 132, Mismatches: 41, Indels: 20
0.68 0.21 0.10
Matches are distributed among these distances:
13 14 0.11
14 74 0.56
15 44 0.33
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAACCTTAAACC
Found at i:32118024 original size:43 final size:46
Alignment explanation
Indices: 32117938--32118033 Score: 135
Period size: 49 Copynumber: 2.1 Consensus size: 46
32117928 TCTAAACCTT
32117938 TAACCCATATCCCATAAACCCAAAACATAAACCATAAACCTTAAACCCC
1 TAACCCATATCCCATAAACCCAAAACAT--A-CATAAACCTTAAACCCC
*
32117987 TAACCCATATCCCATAAACCC-AAA-AT-CATAAATCTTAAACCCC
1 TAACCCATATCCCATAAACCCAAAACATACATAAACCTTAAACCCC
32118030 TAAC
1 TAAC
32118034 ACTTAACCCC
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
43 20 0.43
47 2 0.04
48 3 0.07
49 21 0.46
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (46 bp):
TAACCCATATCCCATAAACCCAAAACATACATAAACCTTAAACCCC
Found at i:32118101 original size:42 final size:43
Alignment explanation
Indices: 32117929--32118105 Score: 130
Period size: 42 Copynumber: 4.2 Consensus size: 43
32117919 ACTAATTAAT
* * * *
32117929 CTAAACCTTTAACCCATATCCCATAAACCCA-AAA-CATAAACC
1 CTAAACCTTAAACCCCTAACCCATAAA-CCATAAATCATAATCC
* ** * *
32117971 ATAAACCTTAAACCCCTAACCCATATCCCATAAACCCAAAAT-C
1 CTAAACCTTAAACCCCTAACCCATAAACCATAAA-TCATAATCC
* * * * * * * *
32118014 ATAAATCTTAAACCCCTAACACTTAACCCCTAACCTC-TAACCC
1 CTAAACCTTAAACCCCTAACCCATAAACCATAA-ATCATAATCC
*
32118057 CTAAACCTTAAACCCC-AACCCTTAAACCATAAATCATAATCC
1 CTAAACCTTAAACCCCTAACCCATAAACCATAAATCATAATCC
32118099 CTAAACC
1 CTAAACC
32118106 CATAATCCAT
Statistics
Matches: 105, Mismatches: 24, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
41 5 0.05
42 51 0.49
43 45 0.43
44 4 0.04
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.20
Consensus pattern (43 bp):
CTAAACCTTAAACCCCTAACCCATAAACCATAAATCATAATCC
Found at i:32118111 original size:15 final size:15
Alignment explanation
Indices: 32118073--32118120 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
32118063 CTTAAACCCC
* *
32118073 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
32118088 AA-TCATAATCCCTA
1 AACCCATAATCCATA
32118102 AACCCATAATCCATA
1 AACCCATAATCCATA
32118117 AACC
1 AACC
32118121 TTAAAATAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:32118125 original size:22 final size:21
Alignment explanation
Indices: 32118076--32118175 Score: 69
Period size: 22 Copynumber: 4.7 Consensus size: 21
32118066 AAACCCCAAC
*
32118076 CCTTAAACCATAAATCATAAT
1 CCTTAAACCATAAATCATAAA
*
32118097 CCCTAAACCCAT-AATCCATAAA
1 CCTTAAA-CCATAAAT-CATAAA
** *
32118119 CCTTAAAATAGTAAATCCTAAA
1 CCTTAAACCA-TAAATCATAAA
* * * *
32118141 GCTTAAACCCTAAATCACATAT
1 CCTTAAACCATAAATCATA-AA
32118163 CC-TAAACCATAAA
1 CCTTAAACCATAAA
32118176 CCCTAAACTA
Statistics
Matches: 59, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
21 27 0.46
22 29 0.49
23 3 0.05
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAATCATAAA
Found at i:32118180 original size:14 final size:14
Alignment explanation
Indices: 32118073--32118188 Score: 61
Period size: 14 Copynumber: 8.1 Consensus size: 14
32118063 CTTAAACCCC
32118073 AACCCTTAAACCATA
1 AACCC-TAAACCATA
* * * *
32118088 AATCATAATCCCTA
1 AACCCTAAACCATA
*
32118102 AACCCATAATCCATA
1 AACCC-TAAACCATA
* **
32118117 AACCTTAAAATAGTA
1 AACCCTAAACCA-TA
* * *
32118132 AATCCTAAAGCTTA
1 AACCCTAAACCATA
* *
32118146 AACCCTAAATCACA
1 AACCCTAAACCATA
* *
32118160 TATCCTAAACCATA
1 AACCCTAAACCATA
*
32118174 AACCCTAAACTATA
1 AACCCTAAACCATA
32118188 A
1 A
32118189 TGATAAATAA
Statistics
Matches: 72, Mismatches: 27, Indels: 5
0.69 0.26 0.05
Matches are distributed among these distances:
14 48 0.67
15 24 0.33
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (14 bp):
AACCCTAAACCATA
Found at i:32118601 original size:40 final size:40
Alignment explanation
Indices: 32118524--32118602 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
32118514 CTGCTAAAGC
32118524 TCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGG
1 TCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGG
*
32118564 TCGATCTATAGCGGCGTTTTTCTAAAAGCGCCACTAATG
1 TCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATG
32118603 CCACTAAAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
TCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGG
Found at i:32118698 original size:40 final size:40
Alignment explanation
Indices: 32118654--32118736 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
32118644 TTTTGCGGTA
*
32118654 TTTTTTAAAAAGAGCCACTAATGATTGATCTATAGCGGCG
1 TTTTTTAAAAAGAGCCACTAATGATCGATCTATAGCGGCG
* * ** *
32118694 TTTTTTAAAAAGTGCCACTAGTTCTCGATCTATAGTGGCG
1 TTTTTTAAAAAGAGCCACTAATGATCGATCTATAGCGGCG
32118734 TTT
1 TTT
32118737 GGATAAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (40 bp):
TTTTTTAAAAAGAGCCACTAATGATCGATCTATAGCGGCG
Found at i:32123257 original size:15 final size:14
Alignment explanation
Indices: 32123228--32123267 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
32123218 AATTTAGTTG
32123228 ATAAAAAAAATAAA
1 ATAAAAAAAATAAA
*
32123242 ATAAACAAATATAAA
1 ATAAA-AAAAATAAA
32123257 ATAAAATAAAA
1 ATAAAA-AAAA
32123268 ACAGAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (14 bp):
ATAAAAAAAATAAA
Found at i:32124137 original size:13 final size:14
Alignment explanation
Indices: 32124095--32124139 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
32124085 TAATAATGAT
32124095 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
32124110 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
32124123 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
32124136 TAAA
1 TAAA
32124140 ACAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:32125959 original size:20 final size:20
Alignment explanation
Indices: 32125930--32125976 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
32125920 GGCCTGGCCC
*
32125930 CACGGCCATGTCCCAAGCCA
1 CACGGGCATGTCCCAAGCCA
*
32125950 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTCCCAAGCCA
32125970 CACGGGC
1 CACGGGC
32125977 GTGTGCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.43, G:0.28, T:0.09
Consensus pattern (20 bp):
CACGGGCATGTCCCAAGCCA
Found at i:32128360 original size:14 final size:14
Alignment explanation
Indices: 32128341--32128368 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32128331 GTGTTATTCG
32128341 TTAAAAAGAAAGAT
1 TTAAAAAGAAAGAT
32128355 TTAAAAAGAAAGAT
1 TTAAAAAGAAAGAT
32128369 AGTTTGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (14 bp):
TTAAAAAGAAAGAT
Found at i:32132561 original size:42 final size:42
Alignment explanation
Indices: 32132473--32132562 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
32132463 GACTGTCTAC
** *
32132473 TATTGATTATGTGACTGTAACTGTTATACAAGTACTGACTGT
1 TATTGATTATGTGACTGTAACTGTTATACAAGTACTGAAAGA
* * * *
32132515 TATTGGTTATGTGACTGTGACTGTTATACCAGTATTGAAAGA
1 TATTGATTATGTGACTGTAACTGTTATACAAGTACTGAAAGA
32132557 TATTGA
1 TATTGA
32132563 ACGATATGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (42 bp):
TATTGATTATGTGACTGTAACTGTTATACAAGTACTGAAAGA
Found at i:32133265 original size:20 final size:20
Alignment explanation
Indices: 32133236--32133282 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
32133226 GGCCTGGCCC
*
32133236 CACGGCCATGTCCCAAGCCA
1 CACGGGCATGTCCCAAGCCA
*
32133256 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTCCCAAGCCA
32133276 CACGGGC
1 CACGGGC
32133283 GTGTGCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.43, G:0.28, T:0.09
Consensus pattern (20 bp):
CACGGGCATGTCCCAAGCCA
Found at i:32135322 original size:37 final size:37
Alignment explanation
Indices: 32135259--32135330 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
32135249 GAAAGGAAAG
* * *
32135259 ATATTAAATTCCCTTTTGATTCTCTATTTTCCATAAA
1 ATATTAAATTCACTTTTCATTATCTATTTTCCATAAA
*
32135296 ATATTAAATTCAC-TTTCATATATCTATTTTTCATA
1 ATATTAAATTCACTTTTCAT-TATCTATTTTCCATA
32135331 TTTGTTAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 5 0.17
37 25 0.83
ACGTcount: A:0.32, C:0.17, G:0.01, T:0.50
Consensus pattern (37 bp):
ATATTAAATTCACTTTTCATTATCTATTTTCCATAAA
Found at i:32148781 original size:7 final size:7
Alignment explanation
Indices: 32148769--32148799 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
32148759 AAAAATTAGT
32148769 AAAAATA
1 AAAAATA
32148776 AAAAATA
1 AAAAATA
32148783 AAAAAT-
1 AAAAATA
32148789 AAAAATA
1 AAAAATA
32148796 AAAA
1 AAAA
32148800 TCATATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:32148784 original size:13 final size:14
Alignment explanation
Indices: 32148769--32148799 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
32148759 AAAAATTAGT
32148769 AAAAATAAAAAATA
1 AAAAATAAAAAATA
32148783 AAAAAT-AAAAATA
1 AAAAATAAAAAATA
32148796 AAAA
1 AAAA
32148800 TCATATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAAATA
Found at i:32155911 original size:36 final size:36
Alignment explanation
Indices: 32155864--32155936 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
32155854 TCTTTAACAG
32155864 TACAAATGAATGAAAATTTTTAACAGAAATGATCAA
1 TACAAATGAATGAAAATTTTTAACAGAAATGATCAA
32155900 TACAAATGAATGAAAATTTTTAACAGAAATGATCAA
1 TACAAATGAATGAAAATTTTTAACAGAAATGATCAA
32155936 T
1 T
32155937 TTACTCTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (36 bp):
TACAAATGAATGAAAATTTTTAACAGAAATGATCAA
Found at i:32158301 original size:22 final size:20
Alignment explanation
Indices: 32158273--32158317 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 20
32158263 TATTTGATTT
32158273 TGATCTATTCTGCATCTATATC
1 TGATCTATT-TGCATCT-TATC
32158295 TGATCTATTTGCATCTTATC
1 TGATCTATTTGCATCTTATC
32158315 TGA
1 TGA
32158318 ACTGTTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.30
21 7 0.30
22 9 0.39
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (20 bp):
TGATCTATTTGCATCTTATC
Found at i:32163006 original size:40 final size:40
Alignment explanation
Indices: 32162962--32163065 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
32162952 GAATAAGTGT
* *
32162962 TCTTGATAGCACTAGGGTGCTCCTAACAGTACTTTCGTAC
1 TCTTGATAGCACTACGGTGCTCCTAACAGTACTTTCATAC
** * *
32163002 TCTTGATAGCACTATAGTGCTTCTAATAGTACTTTCATAC
1 TCTTGATAGCACTACGGTGCTCCTAACAGTACTTTCATAC
* * *
32163042 TCCTGTTAGTACTACGGTGCTCCT
1 TCTTGATAGCACTACGGTGCTCCT
32163066 GATAGCATAT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (40 bp):
TCTTGATAGCACTACGGTGCTCCTAACAGTACTTTCATAC
Found at i:32163147 original size:20 final size:20
Alignment explanation
Indices: 32163104--32163148 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
32163094 TACGGTGCCT
* *
32163104 TGATTGTACTTTTATGCCCT
1 TGATTGCACTTTTATGCCCC
* *
32163124 TGATTGCACTTTTGTTCCCC
1 TGATTGCACTTTTATGCCCC
32163144 TGATT
1 TGATT
32163149 TTTCTTCGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.22, G:0.16, T:0.49
Consensus pattern (20 bp):
TGATTGCACTTTTATGCCCC
Found at i:32166281 original size:21 final size:23
Alignment explanation
Indices: 32166257--32166299 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32166247 TGATATGGTT
32166257 CATAT-ATATATG-TATTATACA
1 CATATAATATATGATATTATACA
32166278 CATATAAATATATGATATTATA
1 CATAT-AATATATGATATTATA
32166300 TTTAATACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
23 7 0.37
24 7 0.37
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (23 bp):
CATATAATATATGATATTATACA
Found at i:32173370 original size:17 final size:17
Alignment explanation
Indices: 32173345--32173382 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32173335 ATAGTAATTT
* *
32173345 TTTTTATAACTTTAATA
1 TTTTGATAACTTCAATA
32173362 TTTTGATAACTTCAATA
1 TTTTGATAACTTCAATA
32173379 TTTT
1 TTTT
32173383 TTTTACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTTGATAACTTCAATA
Found at i:32193479 original size:46 final size:46
Alignment explanation
Indices: 32193409--32193582 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
32193399 TGTAACCCGC
*
32193409 CCATAAGCGAACT-GGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * *
32193454 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * *
32193504 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
32193547 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
32193583 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 14 0.13
46 50 0.47
47 27 0.25
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:32193528 original size:93 final size:92
Alignment explanation
Indices: 32193416--32193586 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 92
32193406 CGCCCATAAG
* * *
32193416 CGAACTGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32193481 CGAGCTCGGATGCCTAGTTACATTTCA
66 CGAGCTCGGATGCCTAGTTACATTTCA
*
32193508 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACT-GGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32193573 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
32193587 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 6 0.08
93 67 0.92
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTTCA
Found at i:32201099 original size:93 final size:93
Alignment explanation
Indices: 32200991--32201162 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32200981 CCGCCCATAG
* * *
32200991 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32201056 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
32201084 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32201149 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
32201163 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:32201159 original size:46 final size:46
Alignment explanation
Indices: 32200992--32201159 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
32200982 CGCCCATAGC
* *
32200992 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* * * *
32201038 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCATAAGT
* *
32201085 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
*
32201131 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
32201160 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 56 0.56
47 27 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:32203135 original size:17 final size:17
Alignment explanation
Indices: 32203097--32203135 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
32203087 AAAAAAGTAA
*
32203097 AAAAATATTGAAGTTAT
1 AAAAATATTAAAGTTAT
*
32203114 CAAAATATTAAAGTTAT
1 AAAAATATTAAAGTTAT
32203131 AAAAA
1 AAAAA
32203136 AAATTACTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (17 bp):
AAAAATATTAAAGTTAT
Found at i:32205991 original size:46 final size:46
Alignment explanation
Indices: 32205941--32206116 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32205931 TGGTTGAGCA
32205941 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32205987 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32206032 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32206080 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32206117 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32206097 original size:93 final size:93
Alignment explanation
Indices: 32205938--32206109 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32205928 GGATGGTTGA
* *
32205938 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32206003 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32206031 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32206096 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32206110 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32213511 original size:46 final size:45
Alignment explanation
Indices: 32213461--32213635 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
32213451 TGGTTGAGCA
32213461 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
32213507 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
32213553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
32213599 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32213636 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32213615 original size:92 final size:92
Alignment explanation
Indices: 32213458--32213628 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
32213448 GGATGGTTGA
* *
32213458 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32213523 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
32213550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32213615 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32213629 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:32222001 original size:63 final size:63
Alignment explanation
Indices: 32221902--32222025 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 63
32221892 GGAAACTTCA
* * * *
32221902 ATAACCCTTCAACTAGCCGATAGGTCCCTAGTTCACCCAAAAGGAGTTTTGGAGGATGTTTCG
1 ATAACCCTTCAACTAGCCGATAGGTCCCTACTTCACCCAAAAAGAGTTTTAGAGGACGTTTCG
**
32221965 ATAACCCTTCAACTAGTTGATAGGTCCCTACTTCACCCAAAAAGAGTTTTAGAGGACGTTT
1 ATAACCCTTCAACTAGCCGATAGGTCCCTACTTCACCCAAAAAGAGTTTTAGAGGACGTTT
32222026 TAGTAAGGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (63 bp):
ATAACCCTTCAACTAGCCGATAGGTCCCTACTTCACCCAAAAAGAGTTTTAGAGGACGTTTCG
Found at i:32230541 original size:18 final size:19
Alignment explanation
Indices: 32230507--32230542 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32230497 GTAACCTTTG
32230507 TTAAAACTCACTAAGTTTA
1 TTAAAACTCACTAAGTTTA
*
32230526 TTAAAACTTA-TAAGTTT
1 TTAAAACTCACTAAGTTT
32230543 CTAGTTGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (19 bp):
TTAAAACTCACTAAGTTTA
Found at i:32231558 original size:11 final size:11
Alignment explanation
Indices: 32231542--32231571 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
32231532 ATTTTGTATT
32231542 TTTCAAAAAAA
1 TTTCAAAAAAA
32231553 TTTCAAAAAAA
1 TTTCAAAAAAA
32231564 TTTCAAAA
1 TTTCAAAA
32231572 TTACCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (11 bp):
TTTCAAAAAAA
Found at i:32233153 original size:20 final size:21
Alignment explanation
Indices: 32233113--32233153 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32233103 GGGTTGCCTT
**
32233113 GAATGTCGCAACATTCAAAGG
1 GAATGTCGCAACAGACAAAGG
32233134 GAATGTCGCAA-AGACAAAGG
1 GAATGTCGCAACAGACAAAGG
32233154 AAGCCTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.17, G:0.27, T:0.15
Consensus pattern (21 bp):
GAATGTCGCAACAGACAAAGG
Found at i:32233247 original size:60 final size:60
Alignment explanation
Indices: 32233174--32233294 Score: 188
Period size: 60 Copynumber: 2.0 Consensus size: 60
32233164 ACTTAGTAGA
** * * *
32233174 ATTTCGAACACAACTTCAAGAGGTGAGTTATGGGAGATGATGTCATGACATCTATAAGCC
1 ATTTCGAACACAACTTCAAGAGGTGAGTTACAGGAGACGATGTCATAACATCCATAAGCC
*
32233234 ATTTCGAACACAACTTTAAGAGGTGAGTTACAGGAGACGATGTCATAACATCCATAAGCC
1 ATTTCGAACACAACTTCAAGAGGTGAGTTACAGGAGACGATGTCATAACATCCATAAGCC
32233294 A
1 A
32233295 AAGTCGCGAC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (60 bp):
ATTTCGAACACAACTTCAAGAGGTGAGTTACAGGAGACGATGTCATAACATCCATAAGCC
Found at i:32238696 original size:11 final size:11
Alignment explanation
Indices: 32238662--32238707 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
32238652 AATATTAATT
*
32238662 TTATTT-AAGA
1 TTATTTAAAAA
32238672 TT-TTTAAGAAA
1 TTATTTAA-AAA
32238683 TTATTTAAAAA
1 TTATTTAAAAA
*
32238694 TTATTAAAAAA
1 TTATTTAAAAA
32238705 TTA
1 TTA
32238708 AAAAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 3 0.10
10 3 0.10
11 20 0.65
12 5 0.16
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (11 bp):
TTATTTAAAAA
Found at i:32238797 original size:16 final size:16
Alignment explanation
Indices: 32238776--32238806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32238766 ACATGAATAT
*
32238776 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
32238792 TATTTAATATTAAAA
1 TATTTAATATTAAAA
32238807 TAAAGCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:32239555 original size:216 final size:216
Alignment explanation
Indices: 32239181--32239617 Score: 847
Period size: 216 Copynumber: 2.0 Consensus size: 216
32239171 TTTTTGTTTT
32239181 GCATCCTTGTTCTCTTCTTTAGGAATGTGTTGTAATAATCACTAACCAACCTTCTTCAAGAGTAA
1 GCATCCTTGTTCTCTTCTTTAGGAATGTGTTGTAATAATCACTAACCAACCTTCTTCAAGAGTAA
32239246 ATGAATCCGCAAAATTAAAGTAGAATTCAAGGATGACAAGGAGGATTCTTGAATAGCCTTGGCAA
66 ATGAATCCGCAAAATTAAAGTAGAATTCAAGGATGACAAGGAGGATTCTTGAATAGCCTTGGCAA
* *
32239311 TCTCCACACTATCGGTCTAAATCAACACTCGCTCATAATTCCGGCTCTGCAGCATATTCAAACCA
131 CCTCCACACTATCGGTCTAAATCAACACTCGCTCATAATTCCGGCTCTACAGCATATTCAAACCA
32239376 TCAAATATTCCCCATAGTTCA
196 TCAAATATTCCCCATAGTTCA
32239397 GCATCCTTGTTCTCTTCTTTAGGAATGTGTTGTAATAATCACTAACCAACCTTCTTCAAGAGTAA
1 GCATCCTTGTTCTCTTCTTTAGGAATGTGTTGTAATAATCACTAACCAACCTTCTTCAAGAGTAA
32239462 ATGAATCCGCAAAATTAAAGTAGAATTCAAGGATGACAAGGAGGATTCTTGAATAGCCTTGGCAA
66 ATGAATCCGCAAAATTAAAGTAGAATTCAAGGATGACAAGGAGGATTCTTGAATAGCCTTGGCAA
*
32239527 CCTCCACACTATCGGTCTAAATCAACACTCGCTCATAATTCCGGCTCTACAGTATATTCAAACCA
131 CCTCCACACTATCGGTCTAAATCAACACTCGCTCATAATTCCGGCTCTACAGCATATTCAAACCA
32239592 TCAAATATTCCCCATAGTTCA
196 TCAAATATTCCCCATAGTTCA
32239613 GCATC
1 GCATC
32239618 AAAAACTAAA
Statistics
Matches: 218, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
216 218 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (216 bp):
GCATCCTTGTTCTCTTCTTTAGGAATGTGTTGTAATAATCACTAACCAACCTTCTTCAAGAGTAA
ATGAATCCGCAAAATTAAAGTAGAATTCAAGGATGACAAGGAGGATTCTTGAATAGCCTTGGCAA
CCTCCACACTATCGGTCTAAATCAACACTCGCTCATAATTCCGGCTCTACAGCATATTCAAACCA
TCAAATATTCCCCATAGTTCA
Found at i:32248434 original size:31 final size:31
Alignment explanation
Indices: 32248396--32248457 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
32248386 GAACTTGACA
32248396 CTGGCATAACCATGACAATTCCAAGTGAAAT
1 CTGGCATAACCATGACAATTCCAAGTGAAAT
32248427 CTGGCATAACCATGACAATTCCAAGTGAAAT
1 CTGGCATAACCATGACAATTCCAAGTGAAAT
32248458 TTGACAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.23
Consensus pattern (31 bp):
CTGGCATAACCATGACAATTCCAAGTGAAAT
Found at i:32250638 original size:30 final size:30
Alignment explanation
Indices: 32250603--32250844 Score: 145
Period size: 30 Copynumber: 8.1 Consensus size: 30
32250593 AAGTTATACT
* * *
32250603 TTTTCATAGCTCGATAGTCGTAGCTATCCC
1 TTTTCATAGTTTGATAGTCGTAGCCATCCC
* * *
32250633 TTTTCATAATTTGATGGTCGTCA-CCATCCT
1 TTTTCATAGTTTGATAGTCGT-AGCCATCCC
* * *
32250663 TTTTCATTGTTCGATGGTCGTTA-CCATCCC
1 TTTTCATAGTTTGATAGTCG-TAGCCATCCC
* * *
32250693 TTTTCATAATTTGATAG-CGAAAGCTATCCC
1 TTTTCATAGTTTGATAGTCG-TAGCCATCCC
* * *
32250723 TTTTCATAGTATGATAGCCGAAGCCATCCC
1 TTTTCATAGTTTGATAGTCGTAGCCATCCC
* * * * *
32250753 TTTTCATAATTTTATGGTCGTCA-CCATTCT
1 TTTTCATAGTTTGATAGTCGT-AGCCATCCC
* * * *
32250783 TTTTCATAATTTGATGGTCATCA-CCATCCT
1 TTTTCATAGTTTGATAGTCGT-AGCCATCCC
* * * *
32250813 TTTTCATA-ATTGATAGCCGAAGCTATCCC
1 TTTTCATAGTTTGATAGTCGTAGCCATCCC
32250842 TTT
1 TTT
32250845 GCATTCGTCG
Statistics
Matches: 168, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
28 1 0.01
29 18 0.11
30 144 0.86
31 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (30 bp):
TTTTCATAGTTTGATAGTCGTAGCCATCCC
Found at i:32250665 original size:60 final size:59
Alignment explanation
Indices: 32250601--32250790 Score: 204
Period size: 60 Copynumber: 3.2 Consensus size: 59
32250591 CAAAGTTATA
*
32250601 CTTTTTCATAGCTCGATAGTCGTAGCTATCCCTTTTCATAATTTGATGGTCGTCACCATC
1 CTTTTTCATAG-TCGATAGTCGTAGCCATCCCTTTTCATAATTTGATGGTCGTCACCATC
* * * ** *
32250661 CTTTTTCATTGTTCGATGGTCGTTA-CCATCCCTTTTCATAATTTGATAG-CGAAAGCTATC
1 CTTTTTCATAG-TCGATAGTCG-TAGCCATCCCTTTTCATAATTTGATGGTCGTCA-CCATC
* * * * * *
32250721 CCTTTTCATAGTATGATAGCCGAAGCCATCCCTTTTCATAATTTTATGGTCGTCACCATT
1 CTTTTTCATAGT-CGATAGTCGTAGCCATCCCTTTTCATAATTTGATGGTCGTCACCATC
32250781 CTTTTTCATA
1 CTTTTTCATA
32250791 ATTTGATGGT
Statistics
Matches: 104, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
59 5 0.05
60 94 0.90
61 5 0.05
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (59 bp):
CTTTTTCATAGTCGATAGTCGTAGCCATCCCTTTTCATAATTTGATGGTCGTCACCATC
Found at i:32250709 original size:90 final size:90
Alignment explanation
Indices: 32250615--32250844 Score: 234
Period size: 90 Copynumber: 2.6 Consensus size: 90
32250605 TTCATAGCTC
* * * * **
32250615 GATAGTCGTAGCTATCCCTTTTCATAATTTGATGGTCGTCA-CCATCCTTTTTCATTGTTCGATG
1 GATAGTCGTAGCTATCCCTTTTCATAATTTGATAGCCG-AAGCCATCCCTTTTCATAATTCGATG
*
32250679 GTCGTTACCATCCCTTTTCATAATTT
65 GTCGTCACCATCCCTTTTCATAATTT
* * * **
32250705 GATAG-CGAAAGCTATCCCTTTTCATAGTATGATAGCCGAAGCCATCCCTTTTCATAATTTTATG
1 GATAGTCG-TAGCTATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATG
* *
32250769 GTCGTCACCATTCTTTTTCATAATTT
65 GTCGTCACCATCCCTTTTCATAATTT
* * * * *
32250795 GATGGTCATCA-CCATCCTTTTTCATAA-TTGATAGCCGAAGCTATCCCTTT
1 GATAGTCGT-AGCTATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTT
32250845 GCATTCGTCG
Statistics
Matches: 114, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
89 24 0.21
90 88 0.77
91 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (90 bp):
GATAGTCGTAGCTATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGG
TCGTCACCATCCCTTTTCATAATTT
Found at i:32250785 original size:120 final size:119
Alignment explanation
Indices: 32250628--32250844 Score: 337
Period size: 120 Copynumber: 1.8 Consensus size: 119
32250618 AGTCGTAGCT
** * *
32250628 ATCCCTTTTCATAATTTGATGGTCGTCACCATCCTTTTTCATTGTTCGATGGTCGTTACCATCCC
1 ATCCCTTTTCATAATTTGATGGTCGTCACCATCCTTTTTCATAATTCGATGGTCATCACCATCCC
32250693 TTTTCATAATTTGATAG-CGAAAGCTATCCCTTTTCATAGTATGATAGCCGAAGCC
66 TTTTCATAA-TTGATAGCCG-AAGCTATCCCTTTTCATAGTATGATAGCCGAAGCC
* * * *
32250748 ATCCCTTTTCATAATTTTATGGTCGTCACCATTCTTTTTCATAATTTGATGGTCATCACCATCCT
1 ATCCCTTTTCATAATTTGATGGTCGTCACCATCCTTTTTCATAATTCGATGGTCATCACCATCCC
32250813 TTTTCATAATTGATAGCCGAAGCTATCCCTTT
66 TTTTCATAATTGATAGCCGAAGCTATCCCTTT
32250845 GCATTCGTCG
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
119 20 0.23
120 68 0.77
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41
Consensus pattern (119 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACCATCCTTTTTCATAATTCGATGGTCATCACCATCCC
TTTTCATAATTGATAGCCGAAGCTATCCCTTTTCATAGTATGATAGCCGAAGCC
Found at i:32250810 original size:60 final size:59
Alignment explanation
Indices: 32250601--32250823 Score: 198
Period size: 60 Copynumber: 3.7 Consensus size: 59
32250591 CAAAGTTATA
* * * * *
32250601 CTTTTTCATAGCTCGATAGTCGTAGCTATCCCTTTTCATAATTTGATGGTCGTCACCATC
1 CTTTTTCATAGTTTGATGGTCATA-CCATCCCTTTTCATAATTTGATGGTCGTCACCATC
* * * * ** *
32250661 CTTTTTCATTGTTCGATGGTCGTTACCATCCCTTTTCATAATTTGATAG-CGAAAGCTATC
1 CTTTTTCATAGTTTGATGGTC-ATACCATCCCTTTTCATAATTTGATGGTCGTCA-CCATC
* * * * * *
32250721 CCTTTTCATAGTATGATAGCCGA-AGCCATCCCTTTTCATAATTTTATGGTCGTCACCATT
1 CTTTTTCATAGTTTGATGGTC-ATA-CCATCCCTTTTCATAATTTGATGGTCGTCACCATC
* *
32250781 CTTTTTCATAATTTGATGGTCATCACCATCCTTTTTCATAATT
1 CTTTTTCATAGTTTGATGGTCAT-ACCATCCCTTTTCATAATT
32250824 GATAGCCGAA
Statistics
Matches: 129, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
59 5 0.04
60 118 0.91
61 6 0.05
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (59 bp):
CTTTTTCATAGTTTGATGGTCATACCATCCCTTTTCATAATTTGATGGTCGTCACCATC
Found at i:32252302 original size:38 final size:38
Alignment explanation
Indices: 32252229--32252305 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
32252219 AATCAGGGAG
* *
32252229 ATAACATGTGAAGGATCAGATCGGTACATATGTAACAT
1 ATAACATGTGAAGGATCAGATCGGTACAGACGTAACAT
* *
32252267 ATAATATGTGAAGGATCAGATCGGTACCGACGTAACAT
1 ATAACATGTGAAGGATCAGATCGGTACAGACGTAACAT
32252305 A
1 A
32252306 GAAACGTGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (38 bp):
ATAACATGTGAAGGATCAGATCGGTACAGACGTAACAT
Found at i:32265192 original size:46 final size:46
Alignment explanation
Indices: 32265125--32265299 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
32265115 AGTAACCCGC
*
32265125 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
32265171 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
32265221 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
32265264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
32265300 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:32265262 original size:93 final size:93
Alignment explanation
Indices: 32265132--32265304 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
32265122 CGCCCATAAG
* * * *
32265132 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
32265197 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
32265225 CGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32265290 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
32265305 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:32267280 original size:15 final size:15
Alignment explanation
Indices: 32267222--32267301 Score: 67
Period size: 15 Copynumber: 5.4 Consensus size: 15
32267212 CAAAGATAAC
*
32267222 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32267236 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32267251 GAGAAA-CCCGAAATA
1 AAGAAATCCAG-AATA
32267266 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
32267281 AGGAGATCCAGGATA
1 AAGAAATCCAGAATA
32267296 AAGAAA
1 AAGAAA
32267302 CCCAAGACAC
Statistics
Matches: 51, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
14 11 0.22
15 36 0.71
16 4 0.08
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Done.