Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2917

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 27927
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31


Found at i:26768 original size:26 final size:26

Alignment explanation


    Indices: 26739--26790  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      26729 TATGCTACAT

                                      
      26739 AGAATTATTTGCCATTTTTTATGAAA
          1 AGAATTATTTGCCATTTTTTATGAAA

                      *               
      26765 AGAATTATTTTCCATTTTTTATGAAA
          1 AGAATTATTTGCCATTTTTTATGAAA

      26791 CTCATACTAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.35, C:0.08, G:0.10, T:0.48


Consensus pattern (26 bp):   
AGAATTATTTGCCATTTTTTATGAAA
Done.