Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3020
Parameters: 2 7 7 80 10 50 1000
Length:  39943

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1793--1831
21
1.9
21
89
5
62
35
17
17
28
1.94
2093--2118
10
2.6
10
100
0
52
34
0
0
65
0.93
5663--5847
79
2.3
81
84
7
236
24
22
27
25
2.00
5664--5847
40
4.6
40
83
9
216
24
22
27
25
2.00
5716--5880
79
2.1
79
84
6
210
26
21
27
25
1.99
13704--13887
79
2.3
80
83
8
216
23
22
28
25
1.99
13704--13887
40
4.7
40
84
6
216
23
22
28
25
1.99
13756--13920
79
2.1
78
83
8
201
25
21
27
25
1.99
20214--20258
20
2.2
20
80
0
54
42
6
0
51
1.28
20397--20452
28
2.0
28
82
10
69
57
5
1
35
1.32
20808--20851
22
2.0
22
82
8
54
45
6
0
47
1.29
20898--20972
39
1.9
39
86
5
107
62
4
1
32
1.22
21138--21172
17
2.1
16
89
10
52
34
0
5
60
1.21
21133--21193
28
2.1
29
88
8
90
31
0
6
62
1.21
21132--21176
18
2.5
19
78
10
58
35
0
4
60
1.17
21157--21186
10
3.0
10
95
0
51
40
0
3
56
1.16
21963--21991
3
9.7
3
100
0
58
68
0
0
31
0.89
22282--22350
9
7.3
9
73
15
59
49
0
1
49
1.09
22282--22340
10
6.0
10
76
9
50
49
0
0
50
1.00
22275--22386
49
2.4
49
84
13
146
43
0
1
54
1.10
24463--24493
4
7.5
4
92
7
53
51
0
0
48
1.00
26174--26239
13
5.1
13
78
7
80
28
9
24
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26166--26239
26
2.9
26
74
9
80
28
9
24
37
1.86
30350--30458
56
1.9
56
85
3
148
24
16
28
30
1.97
36460--36538
18
4.4
18
91
0
131
31
20
31
16
1.95
37311--37543
46
5.1
46
84
0
286
33
18
22
25
1.96
37311--37559
138
1.8
138
84
3
340
36
18
21
24
1.95
38310--38430
44
2.7
45
79
3
138
32
21
19
26
1.97
38519--38686
44
3.8
44
77
6
187
33
25
15
26
1.95
38502--38689
88
2.1
88
88
1
279
31
25
15
27
1.96
38520--38712
88
2.2
88
85
1
253
33
23
17
25
1.96

Tables:   1

The End!