Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1684

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11279
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:4788 original size:20 final size:20

Alignment explanation


    Indices: 4760--4799  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       4750 TTCACCTCAT

                *               
       4760 GCATTGCATCATATGCATTA
          1 GCATCGCATCATATGCATTA

                                
       4780 GCATCGCATCATATGCATTA
          1 GCATCGCATCATATGCATTA

       4800 AAGACCTTTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33


Consensus pattern (20 bp):   
GCATCGCATCATATGCATTA
Done.