Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2687
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34538
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:1573 original size:30 final size:30
Alignment explanation
Indices: 1539--1635 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
1529 TAAACTAAAA
1539 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
1569 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
*
1599 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1628 ATGAGCTA
1 -TGAGCTA
1636 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 3 0.06
30 45 0.88
31 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:3810 original size:12 final size:12
Alignment explanation
Indices: 3795--3825 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
3785 TTCTTTTTGC
3795 TTTTCAAAGGCT
1 TTTTCAAAGGCT
3807 TTTTCAAAGGCT
1 TTTTCAAAGGCT
3819 TTTTCAA
1 TTTTCAA
3826 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:3895 original size:6 final size:5
Alignment explanation
Indices: 3873--3920 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
3863 CTCTTGCCTC
3873 TCTTT TCTTT T-TATT TCATTT TCTTTT TCTTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TC-TTT TC-TTT TCTTT TCTTT TCTTT
3921 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
4 1 0.03
5 22 0.56
6 15 0.38
7 1 0.03
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:3902 original size:22 final size:22
Alignment explanation
Indices: 3875--3920 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
3865 CTTGCCTCTC
3875 TTTTCTTTTT-ATTTCATTTTCT
1 TTTTCTTTTTCATTTC-TTTTCT
*
3897 TTTTCTTTTTCTTTTCTTTTCT
1 TTTTCTTTTTCATTTCTTTTCT
3919 TT
1 TT
3921 GTTTTCTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTCTTTTTCATTTCTTTTCT
Found at i:4807 original size:22 final size:22
Alignment explanation
Indices: 4782--4865 Score: 91
Period size: 22 Copynumber: 3.8 Consensus size: 22
4772 TTTTATATAC
4782 TTCGATTTTTTTTAATTTTTTT
1 TTCGATTTTTTTTAATTTTTTT
*
4804 TTCGATTTTTTTAAATTTTTTT
1 TTCGATTTTTTTTAATTTTTTT
* * *
4826 TTCGAATTTCCTCTT-CTTTTTTT
1 TTCG-ATTT-TTTTTAATTTTTTT
4849 TT-GATTTTTTTTCAATT
1 TTCGATTTTTTTT-AATT
4866 ACAATATGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.06
21 4 0.08
22 28 0.56
23 13 0.26
24 2 0.04
ACGTcount: A:0.14, C:0.10, G:0.05, T:0.71
Consensus pattern (22 bp):
TTCGATTTTTTTTAATTTTTTT
Found at i:6563 original size:30 final size:29
Alignment explanation
Indices: 6529--6624 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
6519 AAAACTAAAA
6529 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGC-TTAGCTCGTGAGCTAAAGT
* * * * * *
6559 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTAGCTCGTGAGCTAAAGT
6589 TGAGCTAAGCTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGCTTAGCTCGTGAGCTAAAGT
6617 ATGAGCTA
1 -TGAGCTA
6625 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
28 1 0.02
29 22 0.42
30 26 0.50
31 3 0.06
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
TGAGCTAAGCTTAGCTCGTGAGCTAAAGT
Found at i:8625 original size:30 final size:31
Alignment explanation
Indices: 8541--8626 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 31
8531 TGTGCTAAGC
8541 TTTAGCTCGTGAGCT-AAAGTTGAGCTGAGG
1 TTTAGCTCGTGAGCTGAAAGTTGAGCTGAGG
* * * * *
8571 CTAAACTCCTAAGCTG-AAGTTGAGCTGAGG
1 TTTAGCTCGTGAGCTGAAAGTTGAGCTGAGG
*
8601 TTTAGCTCGTGAGTTGAAAG-TGAGCT
1 TTTAGCTCGTGAGCTGAAAGTTGAGCT
8627 AGGAGTGAGC
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
30 40 0.93
31 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (31 bp):
TTTAGCTCGTGAGCTGAAAGTTGAGCTGAGG
Found at i:12428 original size:55 final size:56
Alignment explanation
Indices: 12333--12458 Score: 200
Period size: 55 Copynumber: 2.3 Consensus size: 56
12323 AGTAAGACCA
* *
12333 TGGCATCGATATGTGGTTCCGATATATGTGTACGGGTAAGACCCTGTCTGGGACAG
1 TGGCATCGATATGTGGTTCCGATATATGTGTACGAGTAAGACCCTATCTGGGACAG
* *
12389 TGGCATCGATATGTGGTT-CGATATATGTGTATGAGTAAGACCTTATCTGGGACAG
1 TGGCATCGATATGTGGTTCCGATATATGTGTACGAGTAAGACCCTATCTGGGACAG
*
12444 TGGCATCAATATGTG
1 TGGCATCGATATGTG
12459 ACTACATGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
55 47 0.72
56 18 0.28
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (56 bp):
TGGCATCGATATGTGGTTCCGATATATGTGTACGAGTAAGACCCTATCTGGGACAG
Found at i:19718 original size:20 final size:20
Alignment explanation
Indices: 19695--19741 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
19685 GGGTTAAGAT
*
19695 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
19715 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
19735 TGAGCTG
1 TGAGCTG
19742 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:21450 original size:33 final size:33
Alignment explanation
Indices: 21412--21474 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
21402 GATTACTCAC
21412 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
21445 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
21475 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:21511 original size:12 final size:13
Alignment explanation
Indices: 21491--21558 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 13
21481 TTTTTTTGCT
21491 TTTTCTTTTTCAA
1 TTTTCTTTTTCAA
21504 TTTT-TTTTTCATTCTCA
1 TTTTCTTTTTCA-----A
*
21521 ATTTCTTTTTCAA
1 TTTTCTTTTTCAA
21534 TTTTCTTTTCTTC-A
1 TTTTC-TTT-TTCAA
21548 TTTTCTTTTTC
1 TTTTCTTTTTC
21559 TCTCACTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 10 0.22
13 12 0.27
14 9 0.20
15 3 0.07
17 4 0.09
18 7 0.16
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTCTTTTTCAA
Found at i:21513 original size:18 final size:18
Alignment explanation
Indices: 21489--21532 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
21479 TCTTTTTTTG
* *
21489 CTTTTTCTTTTTCAATTT
1 CTTTTTCATTCTCAATTT
*
21507 TTTTTTCATTCTCAATTT
1 CTTTTTCATTCTCAATTT
21525 CTTTTTCA
1 CTTTTTCA
21533 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTCATTCTCAATTT
Found at i:21528 original size:30 final size:27
Alignment explanation
Indices: 21492--21558 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 27
21482 TTTTTTGCTT
*
21492 TTTCTTTTTCAATTTTTTTTTCATTCTCAA
1 TTTCTTTTTCAATTTTCTTTTC--T-TCAA
*
21522 TTTCTTTTTCAATTTTCTTTTCTTCAT
1 TTTCTTTTTCAATTTTCTTTTCTTCAA
21549 TTTCTTTTTC
1 TTTCTTTTTC
21559 TCTCACTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 13 0.37
28 1 0.03
30 21 0.60
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTCTTTTTCAATTTTCTTTTCTTCAA
Found at i:22633 original size:11 final size:12
Alignment explanation
Indices: 22606--22677 Score: 56
Period size: 12 Copynumber: 5.7 Consensus size: 12
22596 TTAAACTTGA
22606 TTTTTTTTGCTCACC
1 TTTTTTTT--TCA-C
22621 TTTTTTTTTC-C
1 TTTTTTTTTCAC
*
22632 TTTTTTTTTGCTC
1 TTTTTTTTT-CAC
*
22645 GATTTTTTTTCAC
1 -TTTTTTTTTCAC
* *
22658 TTTTTTTTTGAA
1 TTTTTTTTTCAC
22670 TTTTTTTT
1 TTTTTTTT
22678 CAATCAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
11 10 0.20
12 18 0.37
13 5 0.10
14 8 0.16
15 8 0.16
ACGTcount: A:0.07, C:0.14, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTCAC
Found at i:22673 original size:12 final size:12
Alignment explanation
Indices: 22647--22716 Score: 54
Period size: 12 Copynumber: 5.6 Consensus size: 12
22637 TTTTGCTCGA
*
22647 TTTTTTTTCACT
1 TTTTTTTTCAAT
*
22659 TTTTTTTTGAAT
1 TTTTTTTTCAAT
*
22671 TTTTTTTCAATCAAA
1 TTTTTTT---TCAAT
22686 TTTTTTTTCAAAAT
1 TTTTTTTTC--AAT
22700 TTTTTTTT--AT
1 TTTTTTTTCAAT
22710 TTTTTTT
1 TTTTTTT
22717 GTTACTCCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
10 9 0.19
12 19 0.40
14 10 0.21
15 10 0.21
ACGTcount: A:0.19, C:0.07, G:0.01, T:0.73
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:22699 original size:13 final size:15
Alignment explanation
Indices: 22668--22706 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
22658 TTTTTTTTTG
22668 AATTTTTTTTCAATCA
1 AATTTTTTTTCAA-CA
22684 AATTTTTTTTC-A-A
1 AATTTTTTTTCAACA
22697 AATTTTTTTT
1 AATTTTTTTT
22707 TATTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.48
15 1 0.04
16 11 0.48
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (15 bp):
AATTTTTTTTCAACA
Found at i:24236 original size:20 final size:20
Alignment explanation
Indices: 24213--24259 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
24203 GGGTTAAGAT
*
24213 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
24233 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
24253 TGAGCTG
1 TGAGCTG
24260 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:24475 original size:27 final size:26
Alignment explanation
Indices: 24427--24485 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
24417 AGCAGTAGCT
*
24427 ATTAAATTTGTCTCTAAGCTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
24453 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
24480 ATTAAA
1 ATTAAA
24486 ACTATGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 8 0.27
27 18 0.60
28 4 0.13
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Found at i:25606 original size:20 final size:20
Alignment explanation
Indices: 25583--25630 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25573 AGCTTCGTCC
25583 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
25603 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
25623 AGCTCAAC
1 AGCTCAAC
25631 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:31892 original size:17 final size:17
Alignment explanation
Indices: 31881--31915 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
31871 TTAAACTAAG
*
31881 TAAATAAATAAAATAAA
1 TAAAAAAATAAAATAAA
31898 TAAAAAAATAAAAATAAA
1 TAAAAAAAT-AAAATAAA
31916 ACTTTACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (17 bp):
TAAAAAAATAAAATAAA
Found at i:31894 original size:9 final size:9
Alignment explanation
Indices: 31882--31915 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
31872 TAAACTAAGT
31882 AAATAAATA
1 AAATAAATA
31891 AAATAAATA
1 AAATAAATA
31900 AAA-AAATAA
1 AAATAAAT-A
31909 AAATAAA
1 AAATAAA
31916 ACTTTACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.17
9 16 0.70
10 3 0.13
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAATAAATA
Found at i:32006 original size:441 final size:436
Alignment explanation
Indices: 31178--32012 Score: 1504
Period size: 441 Copynumber: 1.9 Consensus size: 436
31168 CAAGATTGTT
31178 AAAACAACTTCTAAAGAAAACTCAAGAGAGAAATCTTGGAGAAAACTCAAAGAAATTCTGCTCTC
1 AAAACAACTTCTAAAGAAAACTCAAGAGAGAAATCTTGGAGAAAACTCAAAGAAATTCTGCTCTC
31243 AACAAATCTGAAATTTTAATAATAATGATAAGTGTTTAACAAGGTGGACAGCCATGCCTTAAATA
66 AACAAATCTGAAATTTTAATAATAATGATAAGTGTTTAACAAGGTGGACAGCCATGCCTTAAATA
31308 GCATTATAACTAGTCCTAATCTAATTAGAAAACTATAAAATAAAAAAACTCCTAATTATTTTAAT
131 GCATTATAACTAGTCCTAATCTAATTAGAAAAC-ATAAAATAAAAAAACTCCTAATTATTTTAAT
31373 ATGAAATTCGGTCAAAGGTCATTTTATCTGGGACTCTTGGACTGAAATTGACATAAAATTTAAAC
195 ATGAAATTCGGTCAAAGGTCATTTTATCTGGGACTCTTGGACTGAAATTGACATAAAATTTAAAC
31438 TAAGTATAATAATAAAATAAATAAAAATAAAAATAAAACTTTACAACTTGGGCCACTTTGACAAT
260 TAAGTATAATAATAAAATAAATAAAAATAAAAATAAAACTTTACAACTTGGGCCACTTTGACAAT
31503 TTGGCCTGATTTTCAACTAAGTATGGATGGATTTCTTGATTGGGCTGGGAATTTGCTTATT-GGC
325 TTGGCCTGATTTTCAACTAAGTATGGATGGATTTCTTGATTGGGCTGGGAATTTGCTTATTGGGC
31567 CTCGATCGCTTCCCATACAAAATCCTACAGAGAGACATTGCGTTTTA
390 CTCGATCGCTTCCCATACAAAATCCTACAGAGAGACATTGCGTTTTA
31614 AAAACAACTTCTAAAG-AAACTCAAGAGAGAAATCTTGGAGAAAACTCAAAGAAAATTCTGCTCA
1 AAAACAACTTCTAAAGAAAACTCAAGAGAGAAATCTTGGAGAAAACTCAAAG-AAATTCTGCTC-
31678 TCAACAAATCTGAAATTTT-ATAATAATGATAAGTGTTT-ACAAGGTGGACAGCCATGCCTTTAA
64 TCAACAAATCTGAAATTTTAATAATAATGATAAGTGTTTAACAAGGTGGACAGCCATGCC-TTAA
31741 ATAGGCATTATAACTAGTCCTAATCTAATTAGAAAAC-TAAAATAAAAAAACTCCTAATTATTTT
128 ATA-GCATTATAACTAGTCCTAATCTAATTAGAAAACATAAAATAAAAAAACTCCTAATTATTTT
31805 AAAATATGGAAATTCGGTCAAAGGTCA-TTTATCTGGGACTCTTGGACTGAATATTGACATAAAA
192 --AATAT-GAAATTCGGTCAAAGGTCATTTTATCTGGGACTCTTGGACTGAA-ATTGACAT-AAA
31869 ATTTAAACTAAGTA-AATAAATAAAATAAATAAAAAAATAAAAATAAAACTTTACAACTTGGGCC
252 ATTTAAACTAAGTATAAT-AATAAAATAAAT--AAAAATAAAAATAAAACTTTACAACTTGGGCC
31933 ACTTTGACAATTTGGCCTGATTTTCAACTAAGTATGGATGGATTTCTTGATTGGGCTGGGAATTT
314 ACTTTGACAATTTGGCCTGATTTTCAACTAAGTATGGATGGATTTCTTGATTGGGCTGGGAATTT
31998 GCTTATTGGGCCTCG
379 GCTTATTGGGCCTCG
32013 CCTTCAGGAA
Statistics
Matches: 386, Mismatches: 0, Indels: 20
0.95 0.00 0.05
Matches are distributed among these distances:
435 82 0.21
436 53 0.14
437 81 0.21
438 30 0.08
439 29 0.08
441 104 0.27
442 7 0.02
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.30
Consensus pattern (436 bp):
AAAACAACTTCTAAAGAAAACTCAAGAGAGAAATCTTGGAGAAAACTCAAAGAAATTCTGCTCTC
AACAAATCTGAAATTTTAATAATAATGATAAGTGTTTAACAAGGTGGACAGCCATGCCTTAAATA
GCATTATAACTAGTCCTAATCTAATTAGAAAACATAAAATAAAAAAACTCCTAATTATTTTAATA
TGAAATTCGGTCAAAGGTCATTTTATCTGGGACTCTTGGACTGAAATTGACATAAAATTTAAACT
AAGTATAATAATAAAATAAATAAAAATAAAAATAAAACTTTACAACTTGGGCCACTTTGACAATT
TGGCCTGATTTTCAACTAAGTATGGATGGATTTCTTGATTGGGCTGGGAATTTGCTTATTGGGCC
TCGATCGCTTCCCATACAAAATCCTACAGAGAGACATTGCGTTTTA
Found at i:33313 original size:23 final size:23
Alignment explanation
Indices: 33283--33331 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
33273 TCTTTTTCAT
*
33283 TTCTTTTTCACTTTCTTCAATCTC
1 TTCTTTTGCACTTT-TTCAATCTC
* *
33307 TTCTTTTGCTCTTTTTCATTCTC
1 TTCTTTTGCACTTTTTCAATCTC
33330 TT
1 TT
33332 TTCTTTTTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.08, C:0.27, G:0.02, T:0.63
Consensus pattern (23 bp):
TTCTTTTGCACTTTTTCAATCTC
Done.