genome.fa.s1373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3169
Parameters: 2 7 7 80 10 50 1000
Length:  40808

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171--1338	46	3.7	46	76	14	181	22	20	27	29	1.98
4392--4417	13	2.0	13	100	0	52	38	15	23	23	1.92
8694--8862	46	3.7	46	75	10	173	23	18	27	30	1.98
8687--8857	93	1.8	93	88	0	261	22	19	27	29	1.98
13818--13864	20	2.4	20	82	10	53	46	17	2	34	1.59
22891--22953	20	3.2	20	74	17	69	39	19	9	31	1.83
23114--23218	24	4.2	25	78	9	92	35	19	22	22	1.96
23947--24127	85	2.1	85	95	4	330	47	14	18	19	1.82
23939--24106	6	27.8	6	79	12	184	48	14	17	19	1.80
24249--24330	27	3.1	26	84	5	92	39	24	20	15	1.92
24633--24715	27	3.1	26	86	5	112	36	20	22	20	1.95
24914--25109	27	7.3	27	85	0	239	26	18	18	36	1.94
25114--25604	27	18.2	27	83	4	578	40	8	22	28	1.84
25119--25601	54	8.9	54	87	1	664	40	8	22	28	1.83
27604--27790	6	30.8	6	71	14	134	50	12	16	20	1.78
27604--27786	30	6.2	30	79	11	209	50	13	16	20	1.78
27604--27790	85	2.2	85	94	1	322	50	12	16	20	1.78
27922--27973	27	1.9	27	84	7	70	36	19	25	19	1.95
28141--28199	22	2.7	22	81	0	64	32	22	25	20	1.98
28286--28368	27	3.1	26	89	3	112	38	21	21	18	1.93
28566--28748	27	6.9	27	82	7	198	25	20	18	36	1.95
28567--28747	80	2.3	78	86	4	247	25	19	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28563--28748	53	3.5	54	83	6	222	25	19	18	36	1.95
28760--28962	27	7.5	27	84	4	275	40	10	22	25	1.86
28760--28967	81	2.6	81	86	3	303	40	10	22	25	1.86
36095--36243	28	5.1	27	74	16	95	30	22	10	36	1.88
37850--37901	19	2.7	19	78	18	63	17	15	13	53	1.72

Tables:   1

The End!