genome.fa.s138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold309
Parameters: 2 7 7 80 10 50 1000
Length:  31882

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095--1160	20	3.2	20	64	16	53	16	19	30	33	1.94
1090--1250	47	3.6	44	75	18	156	21	21	29	27	1.98
4155--4234	15	5.4	15	77	7	83	10	18	13	57	1.64
4146--4233	30	3.0	30	80	11	92	10	18	15	55	1.68
6598--6771	46	3.8	46	78	7	210	20	21	29	28	1.98
6594--6764	91	1.9	92	93	1	299	20	21	30	27	1.98
12675--12829	51	3.0	51	92	1	249	31	25	13	29	1.94
12783--12866	37	2.3	37	93	0	141	36	22	10	29	1.88
12732--12904	88	2.0	88	94	0	301	32	24	12	30	1.92
12934--13021	28	3.3	26	86	9	108	27	22	13	36	1.92
12945--13021	24	3.0	25	85	10	102	27	20	14	37	1.91
14643--14705	27	2.3	27	86	0	81	46	20	4	28	1.71
14657--14768	27	4.1	27	89	0	107	32	22	7	38	1.81
14780--15024	27	9.2	27	75	7	214	40	21	8	30	1.83
14793--15027	79	2.9	79	85	3	292	40	20	8	29	1.82
14780--15052	54	5.1	54	75	12	149	40	21	8	30	1.83
15063--15114	27	1.9	27	88	7	79	38	13	13	34	1.84
15177--15254	27	2.9	27	88	3	104	33	23	21	21	1.97
15171--15259	27	3.3	27	84	3	99	37	21	21	20	1.95
16062--16174	26	4.4	26	89	2	165	27	21	23	28	1.99
16329--16420	42	2.2	42	90	0	139	30	14	21	33	1.93
18241--18385	42	3.5	41	76	6	123	20	21	16	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18332--18385	21	2.6	21	75	0	54	14	25	18	40	1.89
25280--25329	25	2.0	25	96	0	91	42	16	16	26	1.88
29468--29561	6	15.3	6	72	16	77	46	14	19	19	1.84
29482--29561	31	2.6	31	89	0	115	46	15	20	18	1.84
29980--30123	27	5.3	27	86	0	198	25	18	18	36	1.94
29983--30150	81	2.1	81	83	4	205	26	17	19	36	1.93
29982--30150	54	3.1	55	82	5	202	26	17	19	36	1.94
29983--30177	81	2.4	81	78	6	182	27	16	18	37	1.92
30108--30233	27	4.7	26	81	5	117	26	8	22	42	1.82
30186--30247	27	2.3	27	82	0	79	29	6	25	38	1.81
30105--30247	54	2.6	54	80	4	146	27	8	23	39	1.84
30170--30397	81	2.8	81	83	2	235	36	6	22	34	1.80
30226--30397	27	6.4	27	86	0	236	39	6	22	31	1.79
30407--30556	27	5.6	27	79	6	160	28	8	22	40	1.82

Tables:   1

The End!