Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1765
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45275
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Found at i:6653 original size:12 final size:12
Alignment explanation
Indices: 6638--6770 Score: 58
Period size: 12 Copynumber: 11.5 Consensus size: 12
6628 ACATACATAC
6638 ATATATAAATAT
1 ATATATAAATAT
6650 ATATATAAATAATT
1 ATATATAAAT-A-T
*
6664 AGTATTAGAAAT-T
1 A-TA-TATAAATAT
*
6677 ATACATATAATAT
1 ATATATA-AATAT
* *
6690 -T-TAGATATAT
1 ATATATAAATAT
6700 ATATATAAATAGT
1 ATATATAAATA-T
*
6713 ATA-A-AAAAAT
1 ATATATAAATAT
6723 ATA-ACT-AATA-
1 ATATA-TAAATAT
6733 ATAT-TAAA-AT
1 ATATATAAATAT
6743 ATATA-ATAATAT
1 ATATATA-AATAT
6755 ATATA-AAATAT
1 ATATATAAATAT
6766 A-ATAT
1 ATATAT
6771 TAAAAACTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 37
0.66 0.07 0.26
Matches are distributed among these distances:
9 2 0.02
10 22 0.24
11 20 0.22
12 31 0.33
13 8 0.09
14 2 0.02
15 2 0.02
16 6 0.06
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:6741 original size:21 final size:21
Alignment explanation
Indices: 6698--6769 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
6688 ATTTAGATAT
* *
6698 ATATATATAAATAGTATAAAAAA
1 ATATA-AT-AATAATATATAAAA
6721 ATATAACTAATAATAT-T-AAA
1 ATATAA-TAATAATATATAAAA
6741 ATAT-ATAATAATATATATAAA
1 ATATAATAATAATATATA-AAA
6762 ATATAATA
1 ATATAATA
6770 TTAAAAACTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
18 9 0.21
19 2 0.05
20 7 0.17
21 7 0.17
22 11 0.26
23 6 0.14
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (21 bp):
ATATAATAATAATATATAAAA
Found at i:7063 original size:17 final size:19
Alignment explanation
Indices: 7040--7086 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
7030 TAATAATACT
7040 TTAAAAATAAT-TAATATA
1 TTAAAAATAATATAATATA
7058 TTAAAAATAATAGTAATATA
1 TTAAAAATAATA-TAATATA
*
7078 TTAATAATA
1 TTAAAAATA
7087 TGTAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TTAAAAATAATATAATATA
Found at i:7104 original size:29 final size:27
Alignment explanation
Indices: 7041--7105 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 27
7031 AATAATACTT
7041 TAAAAATAATTAATATATTAAAAATAA
1 TAAAAATAATTAATATATTAAAAATAA
**
7068 TAGTAATATATTAATAATATGTAAAAA-AA
1 TAAAAATA-ATTAAT-ATAT-TAAAAATAA
7097 TAAAAATAA
1 TAAAAATAA
7106 ACGAAAGGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 6 0.19
28 7 0.23
29 12 0.39
30 6 0.19
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (27 bp):
TAAAAATAATTAATATATTAAAAATAA
Found at i:8905 original size:20 final size:19
Alignment explanation
Indices: 8857--8907 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
8847 GATATTATAT
*
8857 CTCATGATTTTCTGTACTC
1 CTCATGATTTTTTGTACTC
8876 CT-A-GAAATTTTTTGTACGTC
1 CTCATG--ATTTTTTGTAC-TC
8896 CTCATGATTTTT
1 CTCATGATTTTT
8908 CTATTCCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 12 0.46
20 10 0.38
21 1 0.04
22 1 0.04
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (19 bp):
CTCATGATTTTTTGTACTC
Found at i:12767 original size:18 final size:17
Alignment explanation
Indices: 12736--12769 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
12726 CTCAACTTCA
12736 TGATTTTCTATTCAAAG
1 TGATTTTCTATTCAAAG
*
12753 TGATGTTTCTTTTCAAA
1 TGAT-TTTCTATTCAAA
12770 TGGAATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (17 bp):
TGATTTTCTATTCAAAG
Found at i:14481 original size:918 final size:925
Alignment explanation
Indices: 12811--14661 Score: 2593
Period size: 918 Copynumber: 2.0 Consensus size: 925
12801 TATTTTCATT
* * *
12811 TCTATTGAAATATTTAGGCTTCAGCTTTCTGATTTTCTTTTCAAAATGATAATTATTTTGGTCAT
1 TCTATTGAAATAATTAGGCTTCAACTTTCTGATTTTCTTTTCAAAATGATAATTATTTTAGTCAT
* * * *
12876 CATCAAATAAACTTCAAAATGTAGGGTCTTTTCATTCTACTTTCATTTGTATTTAAATAAATAGG
66 CATCAAATAAACTTCAAAAAGTAGGGTCTTTTAATTCTACTTTCATTTGTATTGAAATAAACAGG
* * *
12941 TTTGATTTTCTTTTCAAAATGATATTGGTCATCATCAAATGGACTTTAAATTCTAGGGCTTTTTT
131 TTTGATTTTCTTTTCAAAATGATAGTGGCCATCATCAAATAGACTTTAAATTCTAGGGCTTTTTT
** * * *
13006 GTACTCTAAAGAAATTTGGGTTTCCTTTTCTTTCTTTCTTTTTTTGTTAAAAAAAGTGATTAACA
196 GTA-TCT-AAGAAATTTGGGTTTCCTACTCTATCTTTCTTTTTTTCTGAAAAAAAGTGATTAACA
* * *
13071 TGAACCTTAGCTTCATAGATTTGTTTTAGGAATGACTAGAAATATTTTATGTTTAGCAAATTAGG
259 TGAACCTTAGCATCATAGATTTGCTTTAGGAATGACTAGAAATATTTTATGTTTAACAAATT--G
* * * * *
13136 TCAGATAAAACTTACAGAGAGTAATACATTTTCTAACCAAGTATCAAAACACTGAACAAAATAAA
322 TCAG----AAC-TACAGAGACTAATAC--TTTCTAACAAAGTATCAAAAAAATGAACAAAACAAA
13201 AAAAATGAAAAATTACCACTAGATCATTTCAGGAGGAGGATTTGCCCCAAAATGGTTATAATTAA
380 AAAAATGAAAAATTACCACTAGATCATTTCAGGAGGAGGATTTGCCCCAAAATGGTTATAATTAA
*
13266 CCTCAATTTCATACCCAGGAGCTTCTTCTAATCCCACCATAGGACTAATTGCCAAAAGAAAAGAA
445 CCTCAATTTCATACCCAGGAGCTTCTTCTAATCCCACCATACGACTAATTGCCAAAAGAAAAGAA
*
13331 GAAGAAAAAATTAAATGCTTGCCAAATCCATTTTTGAAAGAAAAATCCCTAGGGAAAATTAAGAA
510 GAAGAAAAAATTAAATGCTTGCCAAATCCATTTTTGAAAGAAAAATCCCTAGGGAAAACTAAGAA
* *
13396 TAATTAAAAAAACACTTACACTTCATCCCCTGCTACAATTATATTTTGAATATTCTCAAAATAGC
575 TAATTAAAAAAACACTTACACTTCATCCCCTGCTACAACTATATTTTGAATATTCTCAAAATAAC
*
13461 CATTGTTGAACACTTCCAAAATATTATTTTGTTGGATATCATCACTCATGTTTTCACCATTTCCA
640 CATTGTTGAACACTTCCAAAATATTATTTTGTTGGATATCATCACTCACGTTTTCACCATTTCCA
* *
13526 CCTATATTGGCCATCTAAAAAAAAAGATTTGTTAGTTTAGTTTA-CCTATAAGTT-TATCTATCT
705 CCAATATTGGCCATCTAAAAAAAAAGATTTGTTAGTTTAGTTTATCC-AT-AGTTCTAGCTATCT
* * *
13589 ATAAAATTTTAAATTCTTTTTTTCCTGAA-CCAGCATCAATCAAAATGATAGAAAAACCTTGGAA
768 ATAAAATTTTAAATTCTTTTTTCCCT-AATCCAACATCAATCAAAATGATAGAAAAACCTTGCAA
* * * *
13653 AATTAAAAAATAAAAAATTTGAAGAAAAAAAGGTAGAATCATCTATAAATGTTTAATAAAATTAA
832 AAATAAAAAATAAAAAATTTGAAGAAAAAAAGATAGAATCATCAATAAATGTTTAATAAAACTAA
* *
13718 AAAAACTAGTTTAATTTACCTAATAATCTA
897 AAAAAAT-GTTTAATTGACCTAATAATCTA
* *
13748 TCTATTGAAATAATTAGGCTTCAACTTTTTGATTTTCTTTTCAAAATTATAATTATTTTAGTCAT
1 TCTATTGAAATAATTAGGCTTCAACTTTCTGATTTTCTTTTCAAAATGATAATTATTTTAGTCAT
**
13813 CATCAAATAAACTTCAAAAAGTAGGGTCTTTTAATTCTGTTTTCATTTGTATTGAAATAAACAGG
66 CATCAAATAAACTTCAAAAAGTAGGGTCTTTTAATTCTACTTTCATTTGTATTGAAATAAACAGG
*
13878 TTTGATTTTCTTTTCAAAATGATAGTGGCCATCTTCAAATAGACTTTAAATTCT-GGG-TTTTTT
131 TTTGATTTTCTTTTCAAAATGATAGTGGCCATCATCAAATAGACTTTAAATTCTAGGGCTTTTTT
* ** ** * *
13941 -T-T-T-TG-TTTTTGTTTTTGCTACTCTAAAGAAATCTGGGTT-TTTTTTTCCTGAAAAAATGT
196 GTATCTAAGAAATTTGGGTTTCCTACTCT------ATCT---TTCTTTTTTT-CTGAAAAAAAGT
*
14000 GATTAACATGAACCTTAGCATCATAGATTTGCTTTAGGAGTGACTAGAAATATTTTATGTTTAAC
251 GATTAACATGAACCTTAGCATCATAGATTTGCTTTAGGAATGACTAGAAATATTTTATGTTTAAC
*
14065 AAA-T-T-AG-A-T-C-G-GACTAA-AC-TTCTAACAAAGTAT-AAAAAAATGAACAAAACAAAG
316 AAATTGTCAGAACTACAGAGACTAATACTTTCTAACAAAGTATCAAAAAAATGAACAAAACAAAA
* * *
14119 AAAATGAAAATTTACCACTGGATTCATTTCAGGAGGAGGATTTGCCCCAAACTGGTTATAATTAA
381 AAAATGAAAAATTACCACTAGA-TCATTTCAGGAGGAGGATTTGCCCCAAAATGGTTATAATTAA
* * *
14184 CCTCAATTTCATGCCCAGGAGCTTCTTGTAATCCCACGATACGACTAATTGCCAAAAGAAAAGAA
445 CCTCAATTTCATACCCAGGAGCTTCTTCTAATCCCACCATACGACTAATTGCCAAAAGAAAAGAA
*
14249 GAAGAAAAAAATTAAACT-CTTGCCAAATCCATTTTTGAAAGAAAAATCCCTAGGGAAAACTATG
510 GAAG-AAAAAATTAAA-TGCTTGCCAAATCCATTTTTGAAAGAAAAATCCCTAGGGAAAACTAAG
*
14313 AATAATT-AAGAAACACTTACACTTCATCCCCTGCTACAACTATATTTTGAATATTCTCAAAATA
573 AATAATTAAAAAAACACTTACACTTCATCCCCTGCTACAACTATATTTTGAATATTCTCAAAATA
*
14377 ACCATTGTTGAACACTTCCAAAATATTATTTTGTTGGATATCATCACTCACGTTTTCACCATTTT
638 ACCATTGTTGAACACTTCCAAAATATTATTTTGTTGGATATCATCACTCACGTTTTCACCATTTC
* * * * *
14442 CACCAAATATTGGCCATCT-AAAAAAGAG-TTTCTTTAGTTTTGTTTATCCATCGTTCTGGCTAT
703 CACC-AATATTGGCCATCTAAAAAAAAAGATTT-GTTAGTTTAGTTTATCCATAGTTCTAGCTAT
* * * *
14505 CTATAAATTTTTAAATTCTTTTTTCCCTAATTCAACATCAATCAAAATGATAGAAAAATCTTTCA
766 CTATAAAATTTTAAATTCTTTTTTCCCTAATCCAACATCAATCAAAATGATAGAAAAACCTTGCA
* *
14570 AAAATACAAAATAAAAAATTTGAAGAAAAAAAGATAGAATCATCAATAAGTGTTTAATAAAACTA
831 AAAATAAAAAATAAAAAATTTGAAGAAAAAAAGATAGAATCATCAATAAATGTTTAATAAAACTA
14635 AAAAAAATGTTTAATTGACCTAATAAT
896 AAAAAAATGTTTAATTGACCTAATAAT
14662 TTACTATCTG
Statistics
Matches: 823, Mismatches: 73, Indels: 56
0.86 0.08 0.06
Matches are distributed among these distances:
917 63 0.08
918 388 0.47
919 77 0.09
920 1 0.00
921 2 0.00
922 5 0.01
923 1 0.00
924 1 0.00
925 1 0.00
927 1 0.00
928 12 0.01
929 1 0.00
931 1 0.00
932 3 0.00
933 1 0.00
934 4 0.00
935 6 0.01
936 11 0.01
937 244 0.30
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (925 bp):
TCTATTGAAATAATTAGGCTTCAACTTTCTGATTTTCTTTTCAAAATGATAATTATTTTAGTCAT
CATCAAATAAACTTCAAAAAGTAGGGTCTTTTAATTCTACTTTCATTTGTATTGAAATAAACAGG
TTTGATTTTCTTTTCAAAATGATAGTGGCCATCATCAAATAGACTTTAAATTCTAGGGCTTTTTT
GTATCTAAGAAATTTGGGTTTCCTACTCTATCTTTCTTTTTTTCTGAAAAAAAGTGATTAACATG
AACCTTAGCATCATAGATTTGCTTTAGGAATGACTAGAAATATTTTATGTTTAACAAATTGTCAG
AACTACAGAGACTAATACTTTCTAACAAAGTATCAAAAAAATGAACAAAACAAAAAAAATGAAAA
ATTACCACTAGATCATTTCAGGAGGAGGATTTGCCCCAAAATGGTTATAATTAACCTCAATTTCA
TACCCAGGAGCTTCTTCTAATCCCACCATACGACTAATTGCCAAAAGAAAAGAAGAAGAAAAAAT
TAAATGCTTGCCAAATCCATTTTTGAAAGAAAAATCCCTAGGGAAAACTAAGAATAATTAAAAAA
ACACTTACACTTCATCCCCTGCTACAACTATATTTTGAATATTCTCAAAATAACCATTGTTGAAC
ACTTCCAAAATATTATTTTGTTGGATATCATCACTCACGTTTTCACCATTTCCACCAATATTGGC
CATCTAAAAAAAAAGATTTGTTAGTTTAGTTTATCCATAGTTCTAGCTATCTATAAAATTTTAAA
TTCTTTTTTCCCTAATCCAACATCAATCAAAATGATAGAAAAACCTTGCAAAAATAAAAAATAAA
AAATTTGAAGAAAAAAAGATAGAATCATCAATAAATGTTTAATAAAACTAAAAAAAATGTTTAAT
TGACCTAATAATCTA
Found at i:17064 original size:35 final size:36
Alignment explanation
Indices: 16966--17346 Score: 264
Period size: 35 Copynumber: 10.6 Consensus size: 36
16956 AACAGTTATT
* *
16966 TTTTTGAAAATACGAAAAATTTTTAAAACA-CGAGAA
1 TTTTTGAAAACACG-AAAATTTTTAAAACACCGAAAA
* * *
17002 TTTTAG-AGACACGAAAATTCTTAAAA-ACACGAAAA
1 TTTTTGAAAACACGAAAATTTTTAAAACAC-CGAAAA
* ** * *
17037 TTTTTGAAAACACGGAAATTTTTAAAACATAGGAAT
1 TTTTTGAAAACACGAAAATTTTTAAAACACCGAAAA
* * * *
17073 TTTCTTGAGAACATGAAAATTTTTGAAACA-TGAAAA
1 TTT-TTGAAAACACGAAAATTTTTAAAACACCGAAAA
* * * *
17109 TTTTTTGAAAACATGAAAAAAATATTT-GATCACCG-AAA
1 -TTTTTGAAAACACG---AAAATTTTTAAAACACCGAAAA
*
17147 TTTTTGAAAACACGAAAATTTTTAAAACACCG-GAA
1 TTTTTGAAAACACGAAAATTTTTAAAACACCGAAAA
* *
17182 TTTTTGAAAACAC-AATAATTTTTGAAACA-CGAAATT
1 TTTTTGAAAACACGAA-AATTTTTAAAACACCGAAA-A
* * ** * *
17218 TTTTTGAAAACATGAAATTTTTTTTTGATCACCGGAAA
1 TTTTTGAAAACACGAAA--ATTTTTAAAACACCGAAAA
* * *
17256 -TTTTGAAAACACGAAATTTTTTGAAACACCG-GAA
1 TTTTTGAAAACACGAAAATTTTTAAAACACCGAAAA
** *
17290 TTTTTGAAAACACGAGGATTTTTGAAACA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTAAAACACCGAAAA
*
17325 TTTTTTGAAAACAAGAAAATTT
1 -TTTTTGAAAACACGAAAATTT
17347 CGAAACATGG
Statistics
Matches: 272, Mismatches: 52, Indels: 42
0.74 0.14 0.11
Matches are distributed among these distances:
33 1 0.00
34 28 0.10
35 88 0.32
36 72 0.26
37 56 0.21
38 14 0.05
39 13 0.05
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (36 bp):
TTTTTGAAAACACGAAAATTTTTAAAACACCGAAAA
Found at i:17248 original size:108 final size:108
Alignment explanation
Indices: 17034--17343 Score: 408
Period size: 108 Copynumber: 2.8 Consensus size: 108
17024 AAAAACACGA
* ** * *
17034 AAATTTTTGAAAACACGGAAATTTTTAAAACATAGGAATTTTCTTGAGAACATGAAAATTTTTGA
1 AAATTTTTGAAAACACGAAAATTTTTAAAACACCGGAA-TTT-TTGAAAACA-CAAAATTTTTGA
*
17099 AACATGAAAATTTTTTGAAAACATGAAAAAAATATTTGATCACC-G
63 AACACGAAAATTTTTTGAAAACATGAAAAAAATATTTGATCACCGG
17144 AAATTTTTGAAAACACGAAAATTTTTAAAACACCGGAATTTTTGAAAACACAATAATTTTTGAAA
1 AAATTTTTGAAAACACGAAAATTTTTAAAACACCGGAATTTTTGAAAACACAA-AATTTTTGAAA
* **** *
17209 CACGAAATTTTTTTGAAAACATGAAATTTTTTTTTGATCACCGG
65 CACGAAAATTTTTTGAAAACATGAAAAAAATATTTGATCACCGG
* * **
17253 AAA-TTTTGAAAACACGAAATTTTTTGAAACACCGGAATTTTTGAAAACACGAGGATTTTTGAAA
1 AAATTTTTGAAAACACGAAAATTTTTAAAACACCGGAATTTTTGAAAACAC-AAAATTTTTGAAA
*
17317 CACGAAAATTTTTTGAAAACAAGAAAA
65 CACGAAAATTTTTTGAAAACATGAAAA
17344 TTTCGAAACA
Statistics
Matches: 178, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
107 2 0.01
108 133 0.75
109 8 0.04
110 35 0.20
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.33
Consensus pattern (108 bp):
AAATTTTTGAAAACACGAAAATTTTTAAAACACCGGAATTTTTGAAAACACAAAATTTTTGAAAC
ACGAAAATTTTTTGAAAACATGAAAAAAATATTTGATCACCGG
Found at i:17352 original size:35 final size:35
Alignment explanation
Indices: 16928--17383 Score: 242
Period size: 35 Copynumber: 12.7 Consensus size: 35
16918 AAAATACGAG
** *
16928 AATTTTTTTTAAACACGAAGATTTTTGAAACA--GTT
1 AATTTTTTGAAAACACGAA-ATTTTTGAAACACCG-A
* * *
16963 ATTTTTTTGAAAATACGAAAAATTTTTAAAACA-CGA
1 AATTTTTTGAAAACACG--AAATTTTTGAAACACCGA
* * * *
16999 GAA-TTTTAG-AGACACGAAAATTCTT-AAAAACACGA
1 -AATTTTTTGAAAACACG-AAATTTTTGAAACAC-CGA
* * ** *
17034 AAATTTTTGAAAACACGGAAATTTTTAAAACATAGG
1 AATTTTTTGAAAACAC-GAAATTTTTGAAACACCGA
* * *
17070 AATTTTCTTGAGAACATGAAAATTTTTGAAACA-TGAA
1 AATTTT-TTGAAAACACG-AAATTTTTGAAACACCG-A
* * *
17107 AATTTTTTGAAAACATGAAAAAAATATTTG-ATCACCGA
1 AATTTTTTGAAAACACG----AAATTTTTGAAACACCGA
* *
17145 AA-TTTTTGAAAACACGAAAATTTTTAAAACACCGG
1 AATTTTTTGAAAACACG-AAATTTTTGAAACACCGA
*
17180 AA-TTTTTGAAAACACAATAATTTTTGAAACA-CGA
1 AATTTTTTGAAAACACGA-AATTTTTGAAACACCGA
* *
17214 AATTTTTTTGAAAACATGAAATTTTTTTTTG-ATCACCGGA
1 AA-TTTTTTGAAAACACGAAA----TTTTTGAAACACC-GA
*
17254 AA--TTTTGAAAACACGAAATTTTTTGAAACACCGG
1 AATTTTTTGAAAACACGAAA-TTTTTGAAACACCGA
*
17288 AA-TTTTTGAAAACACGAGGATTTTTGAAACA-CGAA
1 AATTTTTTGAAAACACGA-AATTTTTGAAACACCG-A
* * * **
17323 AATTTTTTGAAAACAAGAAAATTTCGAAACATGGGA
1 AATTTTTTGAAAACACGAAATTTTTGAAACA-CCGA
* *
17359 ATTTTTTTGAAAACATGAAATTTTT
1 AATTTTTTGAAAACACGAAATTTTT
17384 TTTGAATATT
Statistics
Matches: 333, Mismatches: 54, Indels: 67
0.73 0.12 0.15
Matches are distributed among these distances:
33 4 0.01
34 35 0.11
35 103 0.31
36 96 0.29
37 65 0.20
38 9 0.03
39 17 0.05
40 4 0.01
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (35 bp):
AATTTTTTGAAAACACGAAATTTTTGAAACACCGA
Found at i:17384 original size:18 final size:18
Alignment explanation
Indices: 16918--17384 Score: 208
Period size: 18 Copynumber: 25.9 Consensus size: 18
16908 CGATCCAATC
* *
16918 AAAATACGAGAATTTTTTT
1 AAAACACGA-AATTTTTTG
*
16937 TAAACACGAAGA-TTTTTG
1 AAAACACGAA-ATTTTTTG
* *
16955 -AAACA-GTTATTTTTTTG
1 AAAACACG-AAATTTTTTG
* *
16972 AAAATACGAAAAATTTTT-
1 AAAACACG-AAATTTTTTG
*
16990 AAAACACGAGAA-TTTTAG
1 AAAACACGA-AATTTTTTG
* * * *
17008 -AGACACGAAAATTCTTA
1 AAAACACGAAATTTTTTG
*
17025 AAAACACGAAAATTTTTG
1 AAAACACGAAATTTTTTG
17043 AAAACACGGAAA-TTTTT-
1 AAAACAC-GAAATTTTTTG
* *
17060 AAAACATAGGAATTTTCTTG
1 AAAACA-CGAAATTTT-TTG
* * *
17080 AGAACATGAAAATTTTTG
1 AAAACACGAAATTTTTTG
*
17098 -AAACATGAAAATTTTTTG
1 AAAACACG-AAATTTTTTG
* * *
17116 AAAACATGAAAAAAATATTTG
1 AAAACACG---AAATTTTTTG
**
17137 ATCAC-CGAAA-TTTTTG
1 AAAACACGAAATTTTTTG
*
17153 AAAACACGAAAATTTTT-
1 AAAACACGAAATTTTTTG
*
17170 AAAACACCGGAA-TTTTTG
1 AAAACA-CGAAATTTTTTG
*
17188 AAAACAC-AATAATTTTTG
1 AAAACACGAA-ATTTTTTG
17206 -AAACACGAAATTTTTTTG
1 AAAACACGAAA-TTTTTTG
*
17224 AAAACATGAAATTTTTTTTTG
1 AAAACACGAAA---TTTTTTG
**
17245 ATCAC-CGGAAA--TTTTG
1 AAAACAC-GAAATTTTTTG
17261 AAAACACGAAATTTTTTG
1 AAAACACGAAATTTTTTG
*
17279 -AAACACCGGAA-TTTTTG
1 AAAACA-CGAAATTTTTTG
*
17296 AAAACACGAGGA-TTTTTG
1 AAAACACGA-AATTTTTTG
17314 -AAACACGAAAATTTTTTG
1 AAAACACG-AAATTTTTTG
* * *
17332 AAAACAAGAAA-ATTTCG
1 AAAACACGAAATTTTTTG
* *
17349 -AAACATGGGAATTTTTTTG
1 AAAACA--CGAAATTTTTTG
*
17368 AAAACATGAAATTTTTT
1 AAAACACGAAATTTTTT
17385 TTGAATATTT
Statistics
Matches: 348, Mismatches: 57, Indels: 87
0.71 0.12 0.18
Matches are distributed among these distances:
16 29 0.08
17 96 0.28
18 132 0.38
19 53 0.15
20 11 0.03
21 27 0.08
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (18 bp):
AAAACACGAAATTTTTTG
Found at i:17385 original size:108 final size:105
Alignment explanation
Indices: 17035--17384 Score: 348
Period size: 108 Copynumber: 3.2 Consensus size: 105
17025 AAAACACGAA
** * *
17035 AATTTTTGAAAACACGGAAA-TTTTTAAAACATAGGAATTTTCTTGAGAACATGAA-AATTTTTG
1 AATTTTTGAAAACAC-GAAATTTTTTAAAACACCGGAA-TTT-TTGAAAACA-CAAGAATTTTTG
* * * *
17098 AAACATGAAAATTTTTTGAAAACATGAAAAAAATATTT-GATCACCGA
62 AAACACGAAAATTTTTTGAAAAC----AAGAAATATTTCGAACACCGG
* *
17145 AATTTTTGAAAACACGAAAATTTTTAAAACACCGGAATTTTTGAAAACACAATAATTTTTGAAAC
1 AATTTTTGAAAACACGAAATTTTTTAAAACACCGGAATTTTTGAAAACACAAGAATTTTTGAAAC
* * * * *
17210 ACGAAATTTTTTTGAAAACATGAAATTTTTTTTTGATCACCGG
66 ACGAAAATTTTTTGAAAACAAGAAA---TATTTCGAACACCGG
* * * *
17253 AAATTTTGAAAACACGAAATTTTTTGAAACACCGGAATTTTTGAAAACACGAGGATTTTTGAAAC
1 AATTTTTGAAAACACGAAATTTTTTAAAACACCGGAATTTTTGAAAACACAAGAATTTTTGAAAC
**
17318 ACGAAAATTTTTTGAAAACAAGAAA-ATTTCGAAACATGGG
66 ACGAAAATTTTTTGAAAACAAGAAATATTTCG-AACACCGG
*
17358 AATTTTTTTGAAAACATGAAATTTTTT
1 AA--TTTTTGAAAACACGAAATTTTTT
17385 TTGAATATTT
Statistics
Matches: 206, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
104 8 0.04
105 7 0.03
107 27 0.13
108 127 0.62
109 7 0.03
110 30 0.15
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (105 bp):
AATTTTTGAAAACACGAAATTTTTTAAAACACCGGAATTTTTGAAAACACAAGAATTTTTGAAAC
ACGAAAATTTTTTGAAAACAAGAAATATTTCGAACACCGG
Found at i:17815 original size:25 final size:26
Alignment explanation
Indices: 17782--17834 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
17772 CCTGCTGGTG
17782 TGGGTGGCCTGCTACTGCGCTGGGCC
1 TGGGTGGCCTGCTACTGCGCTGGGCC
*
17808 TGGG-GGCCTGCTGCTGCGCTGGGCC
1 TGGGTGGCCTGCTACTGCGCTGGGCC
17833 TG
1 TG
17835 CACTTGGGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.02, C:0.30, G:0.45, T:0.23
Consensus pattern (26 bp):
TGGGTGGCCTGCTACTGCGCTGGGCC
Found at i:18009 original size:6 final size:6
Alignment explanation
Indices: 18000--18105 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
17990 AATTTTTTAT
* * *
18000 TTTTTC TTTTTC GTTTTC GTTTTC TTTTTCC TTTTT- TCTATTC TTTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT-C TTTTTC T-TTTTC -TTTTTC
* * * * * *
18050 TTTTTTC TTTCTTC TTCTTC TTCTTC TTCTTC TTCTTC TTCTTC ATTCTTC
1 -TTTTTC TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC
18101 TTTTT
1 TTTTT
18106 TTCTTCCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
5 1 0.01
6 58 0.66
7 28 0.32
8 1 0.01
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTTC
Found at i:18066 original size:3 final size:3
Alignment explanation
Indices: 18058--18111 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
18048 TCTTTTTTCT
18058 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC ATTC TTC TT-
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC
*
18103 TTT TTC TTC
1 TTC TTC TTC
18112 CCTCTTCACC
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.90
4 3 0.06
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:18117 original size:18 final size:19
Alignment explanation
Indices: 18058--18118 Score: 81
Period size: 18 Copynumber: 3.3 Consensus size: 19
18048 TCTTTTTTCT
18058 TTCTTCTTCTTCTTCTT-C
1 TTCTTCTTCTTCTTCTTCC
*
18076 TTCTTCTTCTTCTTCTTCA
1 TTCTTCTTCTTCTTCTTCC
*
18095 TTCTTCTT-TTTTTCTTCC
1 TTCTTCTTCTTCTTCTTCC
*
18113 CTCTTC
1 TTCTTC
18119 ACCCTAGCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
18 30 0.79
19 8 0.21
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.66
Consensus pattern (19 bp):
TTCTTCTTCTTCTTCTTCC
Found at i:18520 original size:28 final size:30
Alignment explanation
Indices: 18466--18526 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
18456 AAACATAATT
* *
18466 TTTCAAGAAAATTTAGGGGTCATAATGTAA
1 TTTCAAGAAAATTTAGGGGCCAAAATGTAA
*
18496 TTTCAA-AAAGTTTA-GGGCCAAAATGTAA
1 TTTCAAGAAAATTTAGGGGCCAAAATGTAA
18524 TTT
1 TTT
18527 TTTATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 15 0.54
29 7 0.25
30 6 0.21
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (30 bp):
TTTCAAGAAAATTTAGGGGCCAAAATGTAA
Found at i:19044 original size:78 final size:78
Alignment explanation
Indices: 18701--19679 Score: 1116
Period size: 77 Copynumber: 12.7 Consensus size: 78
18691 CAGAAATTGA
* * * * * *
18701 AAATACCTTGGCGTGTGGCCCGAGGCTCGACTCACCTCTAGCATTATGAGTTGATTTTTGAAAAA
1 AAATACCTCGGCATGT-GCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAA
*
18766 CATAAATTTAAAAG
65 CAGAAATTTAAAAG
* *
18780 --ATACCTCGGTATGTGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAA
1 AAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--AAAA
*
18843 AACAGAAATTTACAA-
63 AACAGAAATTTAAAAG
* * * * * * **
18858 AAATACCTCGGCGTGTGTCCAAGGCTCAACTCACCTCTCACAATATGAGCTAATTTAAAAAAAAA
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTAAAAAA
* *
18923 TAGAAA-TT--GA-
65 CAGAAATTTAAAAG
* * * * * *
18933 AAATACCTCAGCATG-ACCTGAGGCTCAACTCACCTCTCGCATTATAAGTAGATTTTTAAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
*
18997 AGGAATTTAAAAG
66 AGAAATTTAAAAG
* * *
19010 AAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATATTAGTTGA-TTTAAAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
19074 AGAAATTTAAAAG
66 AGAAATTTAAAAG
* * * * * **
19087 AAATACCTCGACATGTGTCTGATGCTCAACTCACCTCTCGCAATATAAGTTGATTTAAAAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
*
19152 AGAAATTGAAAAG
66 AGAAATTTAAAAG
* * * * *
19165 AAATACCTCGACATG-ACCCGAGGTTCAACTCACCTCTCGCAATATGAGTTTATTTTAAAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
*
19229 AGAAA-TT--GA-
66 AGAAATTTAAAAG
* * *
19238 AAATTCCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 AAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAA
*
19301 CAGAAATATAAAAG
65 CAGAAATTTAAAAG
* * * * * *
19315 AAATACCTCGGCATGTGACCTAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAAAAT
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
*
19380 AAAAATTTAAAAG
66 AGAAATTTAAAAG
* * * * *
19393 AAATACCTCAGCATG-ACCCGAGGCTCAACCCACCTCTCGTATTATGAGTTGA-TTTTAAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
19456 AGAAATTTAAAAG
66 AGAAATTTAAAAG
* *
19469 AAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
* *
19534 AAAAATATAAAAG
66 AGAAATTTAAAAG
* * * * *
19547 AAATACCTCAGCATGTGACCGAGGCTGAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAAA
19612 CA-AAATTTAAAAG
65 CAGAAATTTAAAAG
* *
19625 AAATACCTCGGCATG-ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT
1 AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
19680 AAAAAAATTT
Statistics
Matches: 760, Mismatches: 117, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
71 1 0.00
73 68 0.09
74 34 0.04
75 14 0.02
76 39 0.05
77 287 0.38
78 246 0.32
79 58 0.08
80 13 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (78 bp):
AAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
AGAAATTTAAAAG
Found at i:19202 original size:232 final size:234
Alignment explanation
Indices: 18719--19679 Score: 1197
Period size: 232 Copynumber: 4.2 Consensus size: 234
18709 TGGCGTGTGG
* * * *
18719 CCCGAGGCTCGACTCACCTCTAGCATTATGAGTTGATTTTTGAAAAACATAAATTTAAAAG--AT
1 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTAAAAAACAGAAATTTAAAAGAAAT
* *
18782 ACCTCGGTATGTGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAAAACA
66 ACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-AAAAAAACA
* * * * * * * *
18847 GAAATTTACAA-AAATACCTCGGCGTGTGTCCAAGGCTCAACTCACCTCTCACAATATGAGCTAA
129 GAAATATAAAAGAAATACCTCGACATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
18911 TTTAAAAAAAAATAGAAATTG---A-AAATACCTCAGCATGA
194 TTT-AAAAAAAACAGAAATTGAAAAGAAATACCTCAGCATGA
* * * *
18949 CCTGAGGCTCAACTCACCTCTCGCATTATAAGTAGATTTTTAAAAAACAGGAATTTAAAAGAAAT
1 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTAAAAAACAGAAATTTAAAAGAAAT
* *
19014 ACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATTAGTTGA-TTTAAAAAAACAGA
66 ACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAAACAGA
* * * *
19077 AATTTAAAAGAAATACCTCGACATGTGTCTGATGCTCAACTCACCTCTCGCAATATAAGTTGATT
131 AATATAAAAGAAATACCTCGACATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
19142 TAAAAAAAACAGAAATTGAAAAGAAATACCTC-GACATGA
196 TAAAAAAAACAGAAATTGAAAAGAAATACCTCAG-CATGA
* * * * *
19181 CCCGAGGTTCAACTCACCTCTCGCAATATGAGTTTATTTTAAAAAAACAGAAA-TT--GA-AAAT
1 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTAAAAAACAGAAATTTAAAAGAAAT
* * **
19242 TCCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGA
66 ACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAAACAGA
* * * * *
19305 AATATAAAAGAAATACCTCGGCATGTGACCTAGGCTCAACTCACTTCTTGCAATATGAGTTGATT
131 AATATAAAAGAAATACCTCGACATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*** * * *
19370 TTTGAAAAATAAAAATTTAAAAGAAATACCTCAGCATGA
196 TAAAAAAAACAGAAATTGAAAAGAAATACCTCAGCATGA
* *
19409 CCCGAGGCTCAACCCACCTCTCGTATTATGAGTTGA-TTTTAAAAAACAGAAATTTAAAAGAAAT
1 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTAAAAAACAGAAATTTAAAAGAAAT
* ** *
19473 ACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAA
66 ACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAAACAGA
* * *
19537 AATATAAAAGAAATACCTC-AGCATGTGACCGAGGCTGAACTCACTTCTCGCAATATGAGTTGAT
131 AATATAAAAGAAATACCTCGA-CATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
** * * *
19601 TTTTGAAAAACCA-AAATTTAAAAGAAATACCTCGGCATGA
194 TTTAAAAAAAACAGAAATTGAAAAGAAATACCTCAGCATGA
19641 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT
1 CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT
19680 AAAAAAATTT
Statistics
Matches: 636, Mismatches: 75, Indels: 37
0.85 0.10 0.05
Matches are distributed among these distances:
226 3 0.00
227 49 0.08
228 177 0.28
229 52 0.08
230 54 0.08
231 47 0.07
232 240 0.38
233 14 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (234 bp):
CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTAAAAAACAGAAATTTAAAAGAAAT
ACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAAACAGA
AATATAAAAGAAATACCTCGACATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TAAAAAAAACAGAAATTGAAAAGAAATACCTCAGCATGA
Found at i:20578 original size:5 final size:5
Alignment explanation
Indices: 20570--20608 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
20560 TTTTCTTTTC
* *
20570 TTTGT TTTGT TTTGT TTTGTT TTTTT TTTTT TTTGT TTT
1 TTTGT TTTGT TTTGT TTTG-T TTTGT TTTGT TTTGT TTT
20609 TTCGTCTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (5 bp):
TTTGT
Found at i:20609 original size:10 final size:10
Alignment explanation
Indices: 20565--20610 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
20555 TTTCTTTTTC
*
20565 TTTTCTTTGT
1 TTTTTTTTGT
*
20575 TTTGTTTTGT
1 TTTTTTTTGT
*
20585 TTTGTTTTTTT
1 TTT-TTTTTGT
20596 TTTTTTTTGT
1 TTTTTTTTGT
20606 TTTTT
1 TTTTT
20611 CGTCTTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:29914 original size:36 final size:36
Alignment explanation
Indices: 29864--29932 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 36
29854 AAATACGAGA
* * * *
29864 ATTTTTTTTTAAACATG-AAGATTTTTGAAACAGTT
1 ATTTTTTTTAAAACACGAAAAATTTTTAAAACAGTT
29899 ATTTTTTTTGAAAACACGAAAAATTTTTAAAACA
1 ATTTTTTTT-AAAACACGAAAAATTTTTAAAACA
29933 CGAGAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 9 0.32
36 6 0.21
37 13 0.46
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (36 bp):
ATTTTTTTTAAAACACGAAAAATTTTTAAAACAGTT
Found at i:29942 original size:17 final size:17
Alignment explanation
Indices: 29903--30167 Score: 162
Period size: 17 Copynumber: 14.8 Consensus size: 17
29893 ACAGTTATTT
29903 TTTTTGAAAACACGAAAAA
1 TTTTT-AAAACACG-AAAA
*
29922 TTTTTAAAACACGAGAA
1 TTTTTAAAACACGAAAA
*
29939 -TTTTAGAGACACGAAAA
1 TTTTTA-AAACACGAAAA
* *
29956 TTCTTAAAAATACGAAAA
1 TT-TTTAAAACACGAAAA
*
29974 TTTTTGAAAACACGGAAA
1 TTTTT-AAAACACGAAAA
* * *
29992 TTTTTAAAACATAGGAAT
1 TTTTTAAAACA-CGAAAA
* *
30010 TTTCTTGAAGACATGAAAA
1 TTT-TT-AAAACACGAAAA
* *
30029 TTTTTGAAACA-TAAAA
1 TTTTTAAAACACGAAAA
30045 TTTTTTTGAAAACACGAAAA
1 --TTTTT-AAAACACGAAAA
** * *
30065 GTTTTTTTGATCACCG-GAA
1 --TTTTTAAAACA-CGAAAA
30084 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
*
30102 TTTTTAAAACACCG-GAA
1 TTTTTAAAACA-CGAAAA
* *
30119 TTTTTGAAACACGAAAT
1 TTTTTAAAACACGAAAA
30136 TTTTTAAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
30153 TTTTTGAAAACACGA
1 TTTTT-AAAACACGA
30168 GGATTTAATG
Statistics
Matches: 192, Mismatches: 35, Indels: 39
0.72 0.13 0.15
Matches are distributed among these distances:
16 11 0.06
17 69 0.36
18 69 0.36
19 26 0.14
20 17 0.09
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:29976 original size:35 final size:35
Alignment explanation
Indices: 29903--30167 Score: 119
Period size: 35 Copynumber: 7.4 Consensus size: 35
29893 ACAGTTATTT
* * *
29903 TTTTTGAAAACACGAAAAATTTTTAAAACACGAGAA
1 TTTTAGAAAACACG-AAAATTTTAAAAACACGAAAA
* *
29939 TTTTAG-AGACACGAAAATTCTTAAAAATACGAAAA
1 TTTTAGAAAACACGAAAATT-TTAAAAACACGAAAA
* * * * * *
29974 TTTTTGAAAACACGGAAATTTTTAAAACATAGGAAT
1 TTTTAGAAAACACGAAAATTTTAAAAACA-CGAAAA
* * * ** *
30010 TTTCTTGAAGACATGAAAATTTTTGAAACA-TAAAA
1 TTT-TAGAAAACACGAAAATTTTAAAAACACGAAAA
* *** * *
30045 TTTTTTTGAAAACACGAAAAGTTTTTTTGATCACCG-GAA
1 --TTTTAGAAAACACGAAAA--TTTTAAAAACA-CGAAAA
* * *
30084 TTTTTGAAAACACGAAAATTTTTAAAACACCG-GAA
1 TTTTAGAAAACACGAAAATTTTAAAAACA-CGAAAA
* * *
30119 TTTTTG-AAACACGAAATTTTTTAAAACACCG-AAA
1 TTTTAGAAAACACGAAAATTTTAAAAACA-CGAAAA
*
30153 TTTTTGAAAACACGA
1 TTTTAGAAAACACGA
30168 GGATTTAATG
Statistics
Matches: 186, Mismatches: 32, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
34 38 0.20
35 60 0.32
36 35 0.19
37 43 0.23
38 8 0.04
39 2 0.01
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (35 bp):
TTTTAGAAAACACGAAAATTTTAAAAACACGAAAA
Found at i:30155 original size:144 final size:144
Alignment explanation
Indices: 29876--30156 Score: 331
Period size: 144 Copynumber: 2.0 Consensus size: 144
29866 TTTTTTTTAA
* * *
29876 ACATGAAGATTTTTGAAACAGTTATTTTTTTTGAAAACACGAAAAATTTTTAAAACACGAGAATT
1 ACATGAAAATTTTTGAAACAGTAAATTTTTTTGAAAACACGAAAAATTTTTAAAACACGAGAATT
* *
29941 TTAGAGACACGAAAATTCTTAAAAATACGAAAATTTTTGAAAACACGGAAATTTTTAAAACATAG
66 TTAGAAACACGAAAATTCTTAAAAATACGAAAATTTTTGAAAACACGGAAATTTTTAAAACACAG
*
30006 GAATTTTCTTGAAG
131 AAATTTTCTTGAAG
* ** *
30020 ACATGAAAATTTTTGAAACA-TAAAATTTTTTTGAAAACACGAAAAGTTTTTTTGATCACCG-GA
1 ACATGAAAATTTTTGAAACAGT-AAATTTTTTTGAAAACACGAAAA-ATTTTTAAAACA-CGAGA
* * * *
30083 ATTTTTGAAAACACGAAAATTTTTAAAACA-CCG-GAATTTTTG-AAACAC-GAAATTTTTTAAA
63 ATTTTAG-AAACACGAAAATTCTTAAAA-ATACGAAAATTTTTGAAAACACGGAAA-TTTTTAAA
*
30144 ACACCGAAATTTT
125 ACACAGAAATTTT
30157 TGAAAACACG
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
143 5 0.04
144 64 0.55
145 24 0.21
146 22 0.19
147 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.33
Consensus pattern (144 bp):
ACATGAAAATTTTTGAAACAGTAAATTTTTTTGAAAACACGAAAAATTTTTAAAACACGAGAATT
TTAGAAACACGAAAATTCTTAAAAATACGAAAATTTTTGAAAACACGGAAATTTTTAAAACACAG
AAATTTTCTTGAAG
Found at i:30173 original size:18 final size:17
Alignment explanation
Indices: 29903--30167 Score: 166
Period size: 18 Copynumber: 14.9 Consensus size: 17
29893 ACAGTTATTT
29903 TTTTTGAAAACACGAAAAA
1 TTTTTGAAAACACG--AAA
29922 TTTTT-AAAACACGAGAA
1 TTTTTGAAAACACGA-AA
* *
29939 TTTTAG-AGACACGAAAA
1 TTTTTGAAAACACG-AAA
* * *
29956 TTCTTAAAAATACGAAAA
1 TTTTTGAAAACACG-AAA
29974 TTTTTGAAAACACGGAAA
1 TTTTTGAAAACAC-GAAA
* *
29992 TTTTT-AAAACATAGGAAT
1 TTTTTGAAAAC--ACGAAA
* *
30010 TTTCTTGAAGACATGAAAA
1 TTT-TTGAAAACACG-AAA
**
30029 TTTTTG-AAACATAAAA
1 TTTTTGAAAACACGAAA
30045 TTTTTTTGAAAACACGAAAA
1 --TTTTTGAAAACACG-AAA
** *
30065 GTTTTTTTGATCAC-CGGAA
1 ---TTTTTGAAAACACGAAA
30084 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACG-AAA
*
30102 TTTTT-AAAACACCGGAA
1 TTTTTGAAAACA-CGAAA
30119 TTTTTG-AAACACGAAA
1 TTTTTGAAAACACGAAA
*
30135 TTTTTTAAAACACCGAAA
1 TTTTTGAAAACA-CGAAA
30153 TTTTTGAAAACACGA
1 TTTTTGAAAACACGA
30168 GGATTTAATG
Statistics
Matches: 196, Mismatches: 29, Indels: 44
0.73 0.11 0.16
Matches are distributed among these distances:
16 22 0.11
17 55 0.28
18 78 0.40
19 21 0.11
20 9 0.05
21 11 0.06
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (17 bp):
TTTTTGAAAACACGAAA
Found at i:36051 original size:12 final size:12
Alignment explanation
Indices: 36034--36162 Score: 56
Period size: 12 Copynumber: 10.5 Consensus size: 12
36024 ACATACATAC
36034 ATATATAAATAT
1 ATATATAAATAT
36046 ATATATAAATAAT
1 ATATATAAAT-AT
*
36059 AGTATTAGAAATAT
1 A-TA-TATAAATAT
*
36073 ACCATAT-AATATT
1 A-TATATAAATA-T
* *
36086 AGATATATATAT
1 ATATATAAATAT
*
36098 AATAGTATAAA-AA
1 -ATA-TATAAATAT
* *
36111 AAATATAACTA-
1 ATATATAAATAT
36122 ATAATATTAAA-AT
1 AT-ATA-TAAATAT
36135 ATATA-ATAATAT
1 ATATATA-AATAT
36147 ATATA-AAATAT
1 ATATATAAATAT
36158 A-ATAT
1 ATATAT
36163 TAAAAACTTA
Statistics
Matches: 90, Mismatches: 13, Indels: 29
0.68 0.10 0.22
Matches are distributed among these distances:
10 4 0.04
11 14 0.16
12 37 0.41
13 18 0.20
14 11 0.12
15 6 0.07
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.36
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:36133 original size:21 final size:20
Alignment explanation
Indices: 36048--36161 Score: 72
Period size: 21 Copynumber: 5.4 Consensus size: 20
36038 ATAAATATAT
* *
36048 ATATAAATAATAGTATTAGAA
1 ATAT-AATAATAATATTAAAA
* *
36069 ATATACCAT-ATAATATTAGAT
1 ATATA--ATAATAATATTAAAA
**
36090 ATATATATAATAGTATAAAAAAA
1 ATATA-ATAATA--ATATTAAAA
36113 ATATAACTAATAATATT-AAA
1 ATATAA-TAATAATATTAAAA
36133 ATAT-ATAATAATATATATAAA
1 ATATAATAATAATAT-TA-AAA
36154 ATATAATA
1 ATATAATA
36162 TTAAAAACTT
Statistics
Matches: 74, Mismatches: 9, Indels: 19
0.73 0.09 0.19
Matches are distributed among these distances:
18 9 0.12
19 2 0.03
20 10 0.14
21 32 0.43
22 6 0.08
23 15 0.20
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATAATAATAATATTAAAA
Found at i:36137 original size:41 final size:44
Alignment explanation
Indices: 36042--36159 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 44
36032 ACATATATAA
** * *
36042 ATATATATATAAATAATAGTATTAGAAATAT-ACCATATAATATTAG
1 ATATATATAT-AATAATA-TAAAAAAAATATAACTA-ATAATATTAG
*
36088 ATATATATATAATAGTATAAAAAAAATATAACTAATAATATTA-
1 ATATATATATAATAATATAAAAAAAATATAACTAATAATATTAG
* *
36131 A-A-ATATATAATAATATATATAAAATATAA
1 ATATATATATAATAATATAAAAAAAATATAA
36160 TATTAAAAAC
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 24 0.38
42 1 0.02
43 1 0.02
44 18 0.29
45 9 0.14
46 10 0.16
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (44 bp):
ATATATATATAATAATATAAAAAAAATATAACTAATAATATTAG
Found at i:36463 original size:21 final size:23
Alignment explanation
Indices: 36439--36486 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 23
36429 AATAATACTT
36439 TAAAAATAAT-TAAT-ATATTAA
1 TAAAAATAATATAATAATATTAA
36460 TAAAAATAATAGTAATAATATTAA
1 TAAAAATAATA-TAATAATATTAA
36484 TAA
1 TAA
36487 TATGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
23 4 0.17
24 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAATATAATAATATTAA
Found at i:36488 original size:21 final size:21
Alignment explanation
Indices: 36425--36488 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
36415 TAATCATTAG
*
36425 TAGTAATAATACTTTAAAAATAA
1 TAGTAATAATA--TTAATAATAA
36448 T--TAAT-ATATTAATAAAAATAA
1 TAGTAATAATATTAAT---AATAA
36469 TAGTAATAATATTAATAATA
1 TAGTAATAATATTAATAATA
36489 TGTAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
18 4 0.12
20 3 0.09
21 14 0.41
23 5 0.15
24 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAGTAATAATATTAATAATAA
Found at i:38452 original size:85 final size:85
Alignment explanation
Indices: 38277--38453 Score: 202
Period size: 85 Copynumber: 2.1 Consensus size: 85
38267 TTGATTTTTT
* * * **
38277 TTGACAACAGAAATTGAAATTACCTCAGCGTGTGCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATGGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAG
** *
38342 TTGATTCTTTCAAAAACATAA
66 TTGA-TAATTCAAAAACAAAA
38363 -TGAAAACAGAAATGGAAAATACCTC-G-GTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATGGAAAATACCTCAGCGTGTG--CTGAGGCTCAACTCACCTCTCGCAATATG
38425 AGTTGA-AATT-AAAACACAAAAA
64 AGTTGATAATTCAAAA-AC-AAAA
38447 TTGAAAA
1 TTGAAAA
38454 TACCTCAGCG
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
82 4 0.05
83 9 0.12
84 4 0.05
85 61 0.78
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (85 bp):
TTGAAAACAGAAATGGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATAATTCAAAAACAAAA
Found at i:38480 original size:72 final size:72
Alignment explanation
Indices: 38365--38744 Score: 431
Period size: 72 Copynumber: 5.2 Consensus size: 72
38355 AAACATAATG
* * * * *
38365 AAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
**
38430 AAATT-A
66 ATTTTGA
* * * * *
38436 AAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTTGCAATATGAGCT
1 AAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
38501 GATTTTGGA
65 GATTTT-GA
* * * * * * ** *
38510 AAAGCAGAACTTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
38575 ATTTTCTTGA
66 A--TT-TTGA
* * ** *
38585 AAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
38650 ATTTTGG
66 ATTTTGA
* *
38657 AAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
38722 ATTTTGA
66 ATTTTGA
*
38729 AAAATAAAAATT-AAAA
1 AAAACAAAAATTGAAAA
38745 GGCTTAACTC
Statistics
Matches: 261, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
71 6 0.02
72 134 0.51
73 51 0.20
74 4 0.02
75 64 0.25
76 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (72 bp):
AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTGA
Found at i:38652 original size:148 final size:147
Alignment explanation
Indices: 38395--38726 Score: 413
Period size: 148 Copynumber: 2.3 Consensus size: 147
38385 CTCGGTGTGA
* ** * *
38395 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---AATT-AAAACACAAAAATTGAAAATA
1 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTCTTGAAAA-GCAGAAATTGAAAATA
* * * *
38456 CCTCAGCGTGCCCCGAAGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGGAAAAGCAGAACT
65 CCTCAACGTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGGAAAA-CAAAAAT
38521 TGAAAATACCTCAACATGT
129 TGAAAATACCTCAACATGT
* **
38540 CTTGAGGCTCAACTCATTTCTCA-CAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATA
1 CCTGAGGCTCAACTCACCTCT-AGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATA
* * ** * *
38604 CCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAACAAAAATT
65 CCTCAACGTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGGAAAACAAAAATT
* * *
38669 GAAATTACCTCAGCGTGT
130 GAAAATACCTCAACATGT
38687 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
38727 GAAAAATAAA
Statistics
Matches: 157, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
145 31 0.20
146 1 0.01
147 56 0.36
148 65 0.41
149 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (147 bp):
CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATAC
CTCAACGTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGGAAAACAAAAATTG
AAAATACCTCAACATGT
Found at i:38833 original size:69 final size:68
Alignment explanation
Indices: 38744--38910 Score: 176
Period size: 69 Copynumber: 2.4 Consensus size: 68
38734 AAAAATTAAA
* * **
38744 AGGCTTAACTCACTTATCGCAATATGAGTCA-ATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTCATATTTAAAA-A-AAACTAAAAATACCTCAACGTG
38808 CCCCG
64 CCCCG
* * ** * *
38813 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTAAAAATACCTCAACGTGT
1 AGGCTCAACTCACTTCTCGCAATATGAG-TCATATTTAAAAAAAACTAAAAATACCTCAACGTGC
**
38878 CTTG
65 CCCG
38882 AGGCTCAACTCA-TCTCTCGCAATATGAGT
1 AGGCTCAACTCACT-TCTCGCAATATGAGT
38911 TGATTTTCCT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
68 2 0.02
69 73 0.88
70 3 0.04
71 5 0.06
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (68 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCATATTTAAAAAAAACTAAAAATACCTCAACGTGCC
CCG
Found at i:38839 original size:122 final size:124
Alignment explanation
Indices: 38619--38848 Score: 311
Period size: 122 Copynumber: 1.9 Consensus size: 124
38609 ATGTGTCTTG
* * * * * *
38619 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAACAAAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTATCGCAATATGAGTTCAATTT-GAAAACAAAAACTAAAAATACCTCAGCG
* *
38684 TGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
65 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
* * * *
38744 AGGCTTAACTCACTTATCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCACCTATCGCAATATGAGTTCAATTTGAAAACAAAAACTAAAAATACCTCAGCGT
* *
38807 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
38849 TTTAAAAAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
122 61 0.67
124 5 0.05
125 25 0.27
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (124 bp):
AGGCTCAACTCACCTATCGCAATATGAGTTCAATTTGAAAACAAAAACTAAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
Found at i:39736 original size:14 final size:13
Alignment explanation
Indices: 39717--39746 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
39707 TTTCATCCCC
39717 TTTTTTCTTCTTTT
1 TTTTTTCTT-TTTT
39731 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
39744 TTT
1 TTT
39747 AAGATGCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:39745 original size:11 final size:11
Alignment explanation
Indices: 39717--39746 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
39707 TTTCATCCCC
*
39717 TTTTTTCTTCT
1 TTTTTTTTTCT
39728 TTTTTTTTTCT
1 TTTTTTTTTCT
39739 TTTTTTTT
1 TTTTTTTT
39747 AAGATGCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCT
Done.