Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 101 of 211
Found at i:28011479 original size:18 final size:19
Alignment explanation
Indices: 28011456--28011496 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
28011446 GTAATTTATT
*
28011456 AAAATTTTCGTG-TTTCAA
1 AAAATTCTCGTGCTTTCAA
*
28011474 AAAATTCTCGTGCTTTTAA
1 AAAATTCTCGTGCTTTCAA
28011493 AAAA
1 AAAA
28011497 ATAATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (19 bp):
AAAATTCTCGTGCTTTCAA
Found at i:28023625 original size:156 final size:156
Alignment explanation
Indices: 28023311--28024005 Score: 906
Period size: 156 Copynumber: 4.4 Consensus size: 156
28023301 TCTATTTCTA
* *
28023311 TTTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA-T
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
*
28023375 TTTTTAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGT
66 TTTTTAATTTCTATTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
28023440 CACACGCCAAGGTA-TTTTTAATTCCT-T
128 CACACGCCGAGGTATTTTTTAATTTCTGT
* * *
28023467 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACATGCCGAGGTATT
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
* * * *
28023531 TCTTTTAAATTTCTATTTTTC-AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGAGTT
66 T-TTTT-AATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
*
28023595 ACATGCCGAGGTA-TTTTTAATTTCTGT
129 ACACGCCGAGGTATTTTTTAATTTCTGT
*
28023622 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATA
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-
* * *
28023686 TCTTTTAAATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
65 T-TTTTTAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* *
28023751 ACACGCTGAGGTATTTTTTTAATTTTTGT
129 ACACGCCGAGGTA-TTTTTTAATTTCTGT
*** * *
28023780 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCAAGGTA-T
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
* * *
28023844 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGTCTCGGGT--C
66 TTTTTAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* * *
28023907 ATGCTGAGGTATTTTTTTAATTTCTAT
131 ACGCCGAGGTA-TTTTTTAATTTCTGT
** *
28023934 TTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCCAAGG
1 TTTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGG
28023999 TATTTTT
62 TATTTTT
28024006 CAATTTATGT
Statistics
Matches: 480, Mismatches: 43, Indels: 29
0.87 0.08 0.05
Matches are distributed among these distances:
154 89 0.19
155 86 0.18
156 159 0.33
157 6 0.01
158 125 0.26
159 15 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (156 bp):
TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
TTTTTAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
ACGCCGAGGTATTTTTTAATTTCTGT
Found at i:28023721 original size:79 final size:77
Alignment explanation
Indices: 28023312--28024027 Score: 860
Period size: 79 Copynumber: 9.2 Consensus size: 77
28023302 CTATTTCTAT
* *
28023312 TTTTTC-AAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
* *
28023376 TTTTAATTTCTA
66 TTTTAATTTTTG
* *
28023388 TTTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACACGCCAAGGT
1 TTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGT
28023453 A-TTTTTAATTCCTTT-
63 ATTTTTTAATT--TTTG
* * *
28023468 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACATGCCGAGGTATT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-T
* *
28023531 TCTTTTAAATTTCTA
65 T-TTTT-AATTTTTG
* * * * *
28023546 TTTTTC-AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGAGTTACATGCCGAGGTA-T
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
*
28023609 TTTTAATTTCTGTT
66 TTTTAATTT-T-TG
*
28023623 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATA
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-
28023686 TCTTTTAAATTTTTG
65 T-TTTT-AATTTTTG
*
28023701 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-T
28023766 TTTTTAATTTTTG
65 TTTTTAATTTTTG
* *
28023779 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCAAGGTAT
1 TTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT
*
28023844 TTTTTAATTTCTG
65 TTTTTAATTTTTG
* * * *
28023857 TTTTTCAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGTCTCGGGT--CATGCTGAGGTATT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-T
*
28023920 TTTTTAATTTCTATT
65 TTTTTAATTT-T-TG
** *
28023935 TTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCCAAGGT
1 TTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGT
* *
28024000 ATTTTTCAATTTATG
63 ATTTTTTAATTTTTG
*
28024015 TTTTCACAAAAAA
1 TTTT-TCAAAAAA
28024028 AAGGGATCGC
Statistics
Matches: 562, Mismatches: 47, Indels: 60
0.84 0.07 0.09
Matches are distributed among these distances:
75 26 0.05
76 71 0.13
77 90 0.16
78 100 0.18
79 132 0.23
80 81 0.14
81 43 0.08
82 10 0.02
83 9 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (77 bp):
TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
TTTTAATTTTTG
Found at i:28024558 original size:17 final size:18
Alignment explanation
Indices: 28024521--28024573 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
28024511 AGCAAAAGGA
*
28024521 AAGAGGAAAAAGTGAGAA-
1 AAGAGGAGAAAG-GAGAAG
28024539 AGAGAGGAGAAAGGAGAAG
1 A-AGAGGAGAAAGGAGAAG
*
28024558 AAGAGAAG-AAGGAGAA
1 AAGAGGAGAAAGGAGAA
28024574 AACGGTGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 8 0.26
18 12 0.39
19 11 0.35
ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02
Consensus pattern (18 bp):
AAGAGGAGAAAGGAGAAG
Found at i:28024895 original size:8 final size:8
Alignment explanation
Indices: 28024855--28024897 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
28024845 AAAAGTAGCT
28024855 GCCCAACA
1 GCCCAACA
28024863 GGCCCAACA
1 -GCCCAACA
* *
28024872 GCCTAGCA
1 GCCCAACA
*
28024880 GGCCAACA
1 GCCCAACA
28024888 GCCCAACA
1 GCCCAACA
28024896 GC
1 GC
28024898 TTGGCAGGCC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.33, C:0.44, G:0.21, T:0.02
Consensus pattern (8 bp):
GCCCAACA
Found at i:28024896 original size:24 final size:25
Alignment explanation
Indices: 28024857--28024908 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
28024847 AAGTAGCTGC
28024857 CCAACAGGCCCAACAGCCTAGCAGG
1 CCAACAGGCCCAACAGCCTAGCAGG
* *
28024882 CCAACA-GCCCAACAGCTTGGCAGG
1 CCAACAGGCCCAACAGCCTAGCAGG
28024906 CCA
1 CCA
28024909 GCCAGGCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.31, C:0.40, G:0.23, T:0.06
Consensus pattern (25 bp):
CCAACAGGCCCAACAGCCTAGCAGG
Found at i:28031301 original size:13 final size:12
Alignment explanation
Indices: 28031281--28031325 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
28031271 AAAACATTTA
28031281 TTATAAATAAAT
1 TTATAAATAAAT
*
28031293 TTCATAAATAAAA
1 TT-ATAAATAAAT
*
28031306 TTAAAAATAAATT
1 TTATAAATAAA-T
28031319 TTATAAA
1 TTATAAA
28031326 CATTTTTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (12 bp):
TTATAAATAAAT
Found at i:28031903 original size:20 final size:21
Alignment explanation
Indices: 28031878--28031917 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
28031868 ATAATTTGAA
28031878 TATTTTATATTTAA-AAAAAT
1 TATTTTATATTTAATAAAAAT
*
28031898 TATTTTATTTTTAATAAAAA
1 TATTTTATATTTAATAAAAA
28031918 AAATCAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTTTATATTTAATAAAAAT
Found at i:28032894 original size:29 final size:28
Alignment explanation
Indices: 28032854--28032927 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
28032844 TTTACCTTAG
* *
28032854 GTTACATTTTAGTCACTTATGTTTAAAAT
1 GTTACATTTTAGTCACTTACG-CTAAAAT
*
28032883 GTTACATTTTAGTCACTTACGCTAACAT
1 GTTACATTTTAGTCACTTACGCTAAAAT
*
28032911 GTAACATTTTAGTCACT
1 GTTACATTTTAGTCACT
28032928 AAGCTATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (28 bp):
GTTACATTTTAGTCACTTACGCTAAAAT
Found at i:28034791 original size:32 final size:33
Alignment explanation
Indices: 28034722--28034792 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
28034712 GAGCTTATTC
* *
28034722 TTTATTTTGATATTTATATTTTTGGTAATTAGG
1 TTTATTTTGATATTTATATTTTTGGTAATAAGA
*
28034755 TTTATTTTGATATTTGTA-TTTTGGT-ATAAAGA
1 TTTATTTTGATATTTATATTTTTGGTAAT-AAGA
28034787 TTTATT
1 TTTATT
28034793 GACCTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 2 0.06
32 15 0.44
33 17 0.50
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (33 bp):
TTTATTTTGATATTTATATTTTTGGTAATAAGA
Found at i:28035024 original size:30 final size:29
Alignment explanation
Indices: 28034988--28035069 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
28034978 ATTTTTTAAA
28034988 ATTTTAAAAAATATAAAAATATAAAAACTT
1 ATTTTAAAAAATATAAAAATATAAAAAC-T
* *
28035018 ATTTTAAATAAT-TAAAAATTATTAAAACT
1 ATTTTAAAAAATATAAAAA-TATAAAAACT
* *
28035047 A-ATTAAAAATATAAAAAAATATA
1 ATTTTAAAAA-ATATAAAAATATA
28035070 TTTTTTCATT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
28 6 0.14
29 13 0.30
30 24 0.56
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (29 bp):
ATTTTAAAAAATATAAAAATATAAAAACT
Found at i:28035041 original size:10 final size:10
Alignment explanation
Indices: 28034985--28035056 Score: 53
Period size: 10 Copynumber: 7.5 Consensus size: 10
28034975 TTAATTTTTT
28034985 AAAATT-TTA
1 AAAATTATTA
*
28034994 AAAAATA-TA
1 AAAATTATTA
28035003 AAAA-TA-TA
1 AAAATTATTA
*
28035011 AAAACTTATTT
1 AAAA-TTATTA
* *
28035022 TAAATAATTA
1 AAAATTATTA
28035032 AAAATTATTA
1 AAAATTATTA
* *
28035042 AAACTAATTA
1 AAAATTATTA
28035052 AAAAT
1 AAAAT
28035057 ATAAAAAAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 8 0.16
9 11 0.22
10 26 0.53
11 4 0.08
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTATTA
Found at i:28035064 original size:20 final size:20
Alignment explanation
Indices: 28035026--28035063 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
28035016 TTATTTTAAA
*
28035026 TAATTAAAAATTATTAAAAC
1 TAATTAAAAATTATAAAAAC
28035046 TAATTAAAAA-TATAAAAA
1 TAATTAAAAATTATAAAAA
28035064 AATATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATTAAAAATTATAAAAAC
Found at i:28037170 original size:17 final size:18
Alignment explanation
Indices: 28037156--28037239 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
28037146 ATAATCTTCG
28037156 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
28037174 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* *
28037193 TATGATATATGCAGTCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
28037214 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
28037233 A-GATATG
1 AGGATATG
28037240 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 32 0.58
21 16 0.29
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:28037182 original size:19 final size:19
Alignment explanation
Indices: 28037158--28037232 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
28037148 AATCTTCGAG
28037158 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28037177 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
28037196 GATATATGCAGTCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
28037217 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
28037233 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:28037204 original size:21 final size:21
Alignment explanation
Indices: 28037159--28037221 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
28037149 ATCTTCGAGG
28037159 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
28037178 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
28037199 ATATGCAGTCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
28037220 AT
1 AT
28037222 GTAATCTTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 19 0.46
21 22 0.54
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:28037258 original size:22 final size:22
Alignment explanation
Indices: 28037171--28037255 Score: 72
Period size: 21 Copynumber: 4.0 Consensus size: 22
28037161 ATGCAATCTT
*
28037171 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* * *
28037192 ATATGAT-ATATGCAGTCTT---
1 AGAT-ATGATATGTAATCTTAGA
28037211 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
28037233 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
28037256 GATTTAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.04
19 13 0.25
21 14 0.27
22 10 0.19
23 13 0.25
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:28037265 original size:22 final size:23
Alignment explanation
Indices: 28037221--28037265 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
28037211 AGATATGATA
*
28037221 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
28037244 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
28037266 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:28037690 original size:15 final size:15
Alignment explanation
Indices: 28037666--28037720 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
28037656 GTTTTTAGTC
28037666 TATT-TTATTAATTT
1 TATTATTATTAATTT
*
28037680 TGTTATTATTAATTT
1 TATTATTATTAATTT
28037695 TATTATTA-T-ATTAT
1 TATTATTATTAATT-T
28037709 ATATTATTATTA
1 -TATTATTATTA
28037721 TACCTACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 3 0.09
14 5 0.15
15 25 0.74
16 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:28037697 original size:12 final size:14
Alignment explanation
Indices: 28037682--28037718 Score: 51
Period size: 12 Copynumber: 2.7 Consensus size: 14
28037672 ATTAATTTTG
28037682 TTATTATTA-ATT-
1 TTATTATTATATTA
28037694 TTATTATTATATTA
1 TTATTATTATATTA
28037708 TATATTATTAT
1 T-TATTATTAT
28037719 TATACCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.41
13 3 0.14
14 1 0.05
15 9 0.41
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTATTATATTA
Found at i:28037713 original size:24 final size:24
Alignment explanation
Indices: 28037667--28037714 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
28037657 TTTTTAGTCT
* *
28037667 ATTTTATTAATTTTGTTATTATTA
1 ATTTTATTAATTATATTATTATTA
28037691 ATTTTATT-ATTATATTATATATTA
1 ATTTTATTAATTATATTAT-TATTA
28037715 TTATTATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
ATTTTATTAATTATATTATTATTA
Found at i:28041791 original size:15 final size:16
Alignment explanation
Indices: 28041767--28041806 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
28041757 ATTTTTTTTC
28041767 AAAA-AAAAAGAAA-G
1 AAAAGAAAAAGAAAGG
28041781 AAAAGAAAAAGAAAGG
1 AAAAGAAAAAGAAAGG
28041797 AAAAGAAAAA
1 AAAAGAAAAA
28041807 TAAAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 11 0.46
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAGG
Found at i:28043300 original size:132 final size:132
Alignment explanation
Indices: 28043063--28043479 Score: 690
Period size: 132 Copynumber: 3.2 Consensus size: 132
28043053 ACCGGTGAAA
* *
28043063 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAATAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAA
*
28043128 GCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
28043193 GC
131 GC
* *
28043195 CACCAAGTCTTGTCTCCCTGAGTAGCAGCAGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAA
* * *
28043260 GCAATAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
28043325 GC
131 GC
* * * *
28043327 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTAAAGATTATAGATTTTATCTCTCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAA
* * * *
28043392 GCAGTAGTGGAGTAGAACGAATACGGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
28043457 GC
131 GC
28043459 CACCAAGCCTTGTCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
28043480 AGTTGCAGTG
Statistics
Matches: 265, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 265 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:28043599 original size:44 final size:43
Alignment explanation
Indices: 28043510--28044771 Score: 385
Period size: 44 Copynumber: 29.2 Consensus size: 43
28043500 AAACCTTGGA
* * * * * *
28043510 TCTTATCTCTCTGAAGTTACAG-AGAGCAGA-TCA-CATCTAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
*
28043550 TCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * *
28043594 TCTTATC-CTCCTGAAGTTACAGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTCT-CTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * * * **
28043639 TCTTATCTCCCTGAGGTTGTAGTGGAGCAGATTAAAGCCGACAA-
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAG
* * * * *
28043683 TCCTATCT-TCCTGAAGTTGCAGTGAAGCGGATTAA-AATCACAG
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
* * * * * * *
28043726 ATCTTATCCCTCTGAAGTTGCAG-AGAGCATA-T-CGCATCTAG
1 -TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* *
28043767 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * * *
28043811 TCTTATC-CTCTTAAAGTTGCAGT-GAGGCAGACTGAAGATGGAAAA
1 TCTTATCTCTC-TGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * * * * * * *
28043856 TCTTATGTCCCTAAAATTGTAGTGGAGCAG-GTTA-AAGCCGATAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* ** * *
28043900 TCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTGAA-
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGAAGC---AAG
* * * *
28043944 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* * * *
28043984 TCTTATC-CTCCTGAAGTTGTAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTCT-CTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * * * **
28044029 TCTTATGTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGACAA-
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAG
* * * * * *
28044073 TCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAA-AATCACAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
* * * * *
28044116 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAG
1 -TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* *
28044157 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * *
28044201 TCTTATC-CTCTTAAAGTTGCAGT-GAGACAGACTGAAGATGGCAAA
1 TCTTATCTCTC-TGAAGTTGCAGTGGAG-CAGACT-AAGA-AGCAAG
* * * * * *
28044246 TCTTATGTAC-CTAAAGTTGCAGTGGAGTAG-GTTA-AAGCCGATAA
1 TCTTATCT-CTCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* ** * * **
28044290 TCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTGG
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG
* ** * * *
28044333 ATCTTATCTATCTGAAGTTGCA-AAGAGCAGA-T-CGCATCAAG
1 -TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* * * *
28044374 TCTTATC-CTCCTGAAGTTACAGT-GAGGTAGACTGAAGATGTCAAA
1 TCTTATCTCT-CTGAAGTTGCAGTGGA-GCAGACT-AAGAAG-CAAG
* * * *
28044419 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTA-AAGCCGATAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* ** * * *
28044463 TCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTAG
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG
* * * * *
28044506 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAG
1 -TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* *
28044547 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * * * *
28044591 TCTTATC-CTCCTGAAGTTGCAGTGGGGCATACTAAATAAACAAA
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAG
* * * * * *
28044635 TCCTGTCTCCCTGAAGTTGCAGTGGAGTAGATTAA-AACCACAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
* * * * * * * *
28044678 ATCTTATCTCTCTAAAGTTGTAGTAGAGTAGA-TCA-CATCGAG
1 -TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* *
28044720 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACT-AAG-AAGCAAG
*
28044765 CCTTATC
1 TCTTATC
28044772 CCCTTGAAAT
Statistics
Matches: 904, Mismatches: 219, Indels: 193
0.69 0.17 0.15
Matches are distributed among these distances:
39 5 0.01
40 120 0.13
41 77 0.09
42 39 0.04
43 60 0.07
44 408 0.45
45 175 0.19
46 19 0.02
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
Found at i:28044016 original size:217 final size:215
Alignment explanation
Indices: 28043475--28044016 Score: 784
Period size: 217 Copynumber: 2.5 Consensus size: 215
28043465 GCCTTGTCTC
*
28043475 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAGAGCAGA
1 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTT-GATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* * * *
28043540 TCACATCTAGTCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
65 TCGCATCTAGTCTTATCTC-CTGAAGTTGCAGAGGAGCAGACTAAGCAAGCAAGTCTTATCCTCC
* * * **
28043605 TGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTTGTAGTGGAGCAGA
129 TAAAGTTACAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTAAAATTGTAGTGGAGCAGA
28043670 TTAAAGCCGACAATCCTATCTT
194 TTAAAGCCGACAATCCTATCTT
* * * *
28043692 CCTGAAGTTGCAGTGAAGCGGATTAAAATCAC-AGATCTTATCCCTCTGAAGTTGCAGAGAGCAT
1 CCTGAAGTTGCAGTGGAGCGGATTAAAA-C-CTTGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
28043756 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGCAAGCAAGTCTTATCCT
64 ATCGCATCTAGTCTTATCT-CCTGAAGTTGCAGA-GGAGCAGACTAAGCAAGCAAGTCTTATCCT
* * *
28043820 CTTAAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGTAGTGGAGCA
127 CCTAAAGTTACAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTAAAATTGTAGTGGAGCA
* *
28043885 GGTTAAAGCCGATAATCCTATCTT
192 GATTAAAGCCGACAATCCTATCTT
*
28043909 CCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
1 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTTG-ATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
28043974 TCGCATCAAGTCTTATCCTCCTGAAGTTGTAGA-GAGGCAGACT
65 TCGCATCTAGTCTTAT-CTCCTGAAGTTGCAGAGGA-GCAGACT
28044017 GAAGATGGCA
Statistics
Matches: 290, Mismatches: 26, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
215 1 0.00
216 4 0.01
217 279 0.96
218 5 0.02
219 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (215 bp):
CCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
CGCATCTAGTCTTATCTCCTGAAGTTGCAGAGGAGCAGACTAAGCAAGCAAGTCTTATCCTCCTA
AAGTTACAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTAAAATTGTAGTGGAGCAGATT
AAAGCCGACAATCCTATCTT
Found at i:28044042 original size:390 final size:390
Alignment explanation
Indices: 28043590--28044619 Score: 1763
Period size: 390 Copynumber: 2.6 Consensus size: 390
28043580 ACTAAGTAAG
28043590 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGG
1 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGG
*
28043655 TTGTAGTGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
66 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
* *
28043720 TCACAGATCTTATCCCTCTGAAGTTGCAGAGAGCATATCGCATCTAGTCTTATCTCCCTGAAGTT
131 TCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
28043785 GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT
196 GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT
* *
28043850 GGAAAATCTTATGTCCCTAAAATTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAA
261 GGAAAATCTTATGTACCTAAAATTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAA
* *
28043915 GTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
326 GTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCAT
** * *
28043980 CAAGTCTTATCCTCCTGAAGTTGTAGAGAGGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGG
1 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGG
*
28044045 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAA
66 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
28044110 TCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
131 TCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
*
28044175 GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGACAGACTGAAGAT
196 GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT
* * *
28044240 GGCAAATCTTATGTACCTAAAGTTGCAGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAA
261 GGAAAATCTTATGTACCTAAAATTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAA
*
28044305 GTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCAT
326 GTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCAT
* * *
28044370 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGTAGACTGAAGATGTCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGG
* * * *
28044435 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
* **
28044500 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
131 TCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
* * * * * *
28044565 GCAGTGGAGCAGACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGGGGCA
196 GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCA
28044620 TACTAAATAA
Statistics
Matches: 601, Mismatches: 39, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
390 601 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (390 bp):
CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGG
TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
TCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
GCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT
GGAAAATCTTATGTACCTAAAATTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAA
GTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCAT
Found at i:28044133 original size:217 final size:212
Alignment explanation
Indices: 28043476--28044328 Score: 701
Period size: 217 Copynumber: 3.9 Consensus size: 212
28043466 CCTTGTCTCC
* *
28043476 CTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAGAGCAGAT
1 CTGAAGTTGCAGTGGAGCGGATTAAAACC-TGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
* * * * * *
28043541 CACATCTAGTCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTAAG-TAAGCAAGTCTTATCCTCC
65 CGCATCAAGTCTTATCTC-CTGAAGTTGCAGAGGAGCAGACTAAGAT-AGCAAATCTTATTC-CC
* * * ** * * * * *
28043605 TGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTTGTAGTGGAGCAGA
127 TAAAGTTGCAGTGAGGCAGACTAAAGCCGAC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGA
*
28043670 TTAAAGCCGACAATCCTATCTT
191 TTAAAACCGACAATCCTATCTT
* * * *
28043692 CCTGAAGTTGCAGTGAAGCGGATTAAAATCACAG-ATCTTATCCCTCTGAAGTTGCAGAGAGCAT
1 -CTGAAGTTGCAGTGGAGCGGATTAAAA-C-CTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
* *
28043756 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGCA-AGCAAGTCTTA-TC
63 ATCGCATCAAGTCTTATCT-CCTGAAGTTGCAGA-GGAGCAGACTAAG-ATAGCAAATCTTATTC
* ** * * * * * *
28043818 CTCTTAAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGTAGTGGAG
125 C-C-TAAAGTTGCAGTGAGGCAGACTAAAG-CCGACAATCCTATCTCCCTGAAGTTGCAGTGGAG
* *
28043883 CAGG-TTAAAGCCGATAATCCTATCTT
187 C-GGATTAAAACCGACAATCCTATCTT
*
28043909 CCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
1 -CTGAAGTTGCAGTGGAGCGGATTAAAACC-TGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
28043974 TCGCATCAAGTCTTATCCTCCTGAAGTTGTAGA-GAGGCAGACTGAAGATGGCAAATCTTATGTC
64 TCGCATCAAGTCTTAT-CTCCTGAAGTTGCAGAGGA-GCAGACT-AAGATAGCAAATCTTAT-TC
* * * *
28044038 CCTGAGGTTGCAGTG-GAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGAAGCG
125 CCTAAAGTTGCAGTGAG-GCAGACTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCG
* *
28044102 GATTAAAATC-ACAGATCTTATCTCT
189 GATTAAAACCGACA-ATCCTATCT-T
* * *** * * *
28044127 CTGAAGTTGCAG-AGAGCAGA-TCGCATCT-AGTCTTATCTCCCTGAAGTTGCA-ATGGAGCAGA
1 CTGAAGTTGCAGTGGAGCGGATTAAAACCTGAATCTTATCTCTCTGAAGTTGCAGA--GAGCAGA
* * * * * *
28044188 CTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAG-TGAGACAGACTGAAGATGGCAAATCTTAT
64 -T-CGC-ATCAAGTCTTAT-CTCCTGAAGTTGCAGAGGAG-CAGACT-AAGATAGCAAATCTTAT
* * ** * *
28044252 GTACCTAAAGTTGCAGTG-GAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGA
123 -TCCCTAAAGTTGCAGTGAG-GCAGACTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGA
*
28044316 GTGGATTAAAACC
186 GCGGATTAAAACC
28044329 TTGGATCTTA
Statistics
Matches: 535, Mismatches: 71, Indels: 60
0.80 0.11 0.09
Matches are distributed among these distances:
212 1 0.00
213 21 0.04
214 8 0.01
215 6 0.01
216 18 0.03
217 435 0.81
218 41 0.08
219 2 0.00
220 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (212 bp):
CTGAAGTTGCAGTGGAGCGGATTAAAACCTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGATC
GCATCAAGTCTTATCTCCTGAAGTTGCAGAGGAGCAGACTAAGATAGCAAATCTTATTCCCTAAA
GTTGCAGTGAGGCAGACTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
ACCGACAATCCTATCTT
Found at i:28044189 original size:173 final size:174
Alignment explanation
Indices: 28043767--28044189 Score: 538
Period size: 173 Copynumber: 2.4 Consensus size: 174
28043757 TCGCATCTAG
* * * * *
28043767 TCTTATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAGA--GAGCAGA-T-CGC-ATCAAGTCTTATCCTCCTGAAGTTGC
* * *
28043831 AGT-GAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGTAGTGGAGCAGGTTAAAGCC
61 AATGGAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGCAGTGGAGCAGATTAAAGCC
* * * * *
28043895 GATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAA
126 GACAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCTAGAA
*
28043944 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTG-TA-GA
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGCAATG-
* * **
28044007 GAGGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGACA
65 GAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCGACA
28044072 ATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAATCAC-AG-A
130 ATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAA-C-CTAGAA
*
28044117 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTAT-CTCCCTGAAGTTGCAATG
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCT-CCTGAAGTTGCAATG
28044181 GA-GCAGACT
65 GAGGCAGACT
28044190 AAGCAAGCAA
Statistics
Matches: 218, Mismatches: 20, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
172 2 0.01
173 178 0.82
174 7 0.03
175 3 0.01
176 7 0.03
177 20 0.09
178 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (174 bp):
TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGCAATGG
AGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCGACAA
TCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCTAGAA
Found at i:28044205 original size:84 final size:82
Alignment explanation
Indices: 28043944--28044231 Score: 219
Period size: 84 Copynumber: 3.4 Consensus size: 82
28043934 AAACCTTGAA
*
28043944 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATC-CTCCTGAAGTTG-TA-G
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC-AGTCTTATCTC-CCTGAAGTTGCAATG
* *
28044006 AGAGGCAGACTGAAGATGGCAAA
64 -GA-GCAGACT-AAGA-AGCAAG
* * * * * * *
28044029 TCTTATGTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGA-CAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CG-C-ATCAGTCTTATCTCCCTGAAGTTGC
* * * * *
28044093 AGTGAAGCGGATTAA-AATCACAG
60 AATGGAGCAGACTAAGAAGCA-AG
28044116 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATG
1 -TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC-AGTCTTATCTCCCTGAAGTTGCAATG
28044181 GAGCAGACTAAGCAAGCAAG
64 GAGCAGACTAAG-AAGCAAG
* *
28044201 TCTTATC-CTCTTAAAGTTGCAGTGAGACAGA
1 TCTTATCTCTC-TGAAGTTGCAGAGAG-CAGA
28044232 CTGAAGATGG
Statistics
Matches: 157, Mismatches: 29, Indels: 34
0.71 0.13 0.15
Matches are distributed among these distances:
82 1 0.01
83 5 0.03
84 52 0.33
85 25 0.16
86 14 0.09
87 10 0.06
88 21 0.13
89 23 0.15
90 4 0.03
91 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (82 bp):
TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAGTCTTATCTCCCTGAAGTTGCAATGGA
GCAGACTAAGAAGCAAG
Found at i:28044265 original size:173 final size:172
Alignment explanation
Indices: 28043767--28044269 Score: 468
Period size: 173 Copynumber: 2.9 Consensus size: 172
28043757 TCGCATCTAG
* * * * * *
28043767 TCTTATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAGA--GAGCAGA-T-CGC-ATCAAGTCTTATCCTCCTGAAGTTGA
* * * * * ** *
28043831 AGTGAGGCAGACTGAAGATGGAAAATCTTATGTCCCTAAAATTGTAGTGGAGCAGGTTAAAGCCG
61 AGAGAGGCAGACTGAAGATAGCAAATCTTA-GTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACG
* * * * * *
28043896 ATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAA
125 ACAATCCTATCTACCTAAAGTTGCAGTGAAGCGGATTAAAACCTAGAA
*
28043944 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGTAGAGA
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGAAGAGA
* * * * *
28044009 GGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGACAAT
66 GGCAGACTGAAGATAGCAAATCTTA-GTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACGACAAT
* *
28044074 CCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAATCAC-AG-A
130 CCTATCTACCTAAAGTTGCAGTGAAGCGGATTAAAA-C-CTAGAA
*
28044117 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTAT-CTCCCTGAAGTTGCAATG
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCT-CCTGAAGTTG-AA-G
* * *
28044181 -GA-GCAGACT-AAGCA-AGCAAGTCTTA-TCCTCTTAAAGTTGCAGT-GAGACAGACTGAAGAT
63 AGAGGCAGACTGAAG-ATAGCAAATCTTAGTCC-C-TAAAGTTGCAGTGGAG-CAGACTAAAGAC
* * *
28044240 GGCAAATCTTATGTACCTAAAGTTGCAGTG
124 GAC-AATCCTATCTACCTAAAGTTGCAGTG
28044270 GAGTAGGTTA
Statistics
Matches: 282, Mismatches: 33, Indels: 26
0.83 0.10 0.08
Matches are distributed among these distances:
170 3 0.01
171 4 0.01
172 34 0.12
173 203 0.72
174 7 0.02
175 3 0.01
176 7 0.02
177 20 0.07
178 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (172 bp):
TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGAAGAGA
GGCAGACTGAAGATAGCAAATCTTAGTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACGACAATC
CTATCTACCTAAAGTTGCAGTGAAGCGGATTAAAACCTAGAA
Found at i:28044306 original size:173 final size:173
Alignment explanation
Indices: 28044157--28044686 Score: 511
Period size: 173 Copynumber: 3.0 Consensus size: 173
28044147 TCGCATCTAG
* * * *
28044157 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCA
1 TCTTATCTACCTGAAGTTGCAA-AGAGCAGA-T-AGC-AGCAAGTCTTATCCTCCTAAAGTTACA
* *
28044222 GTGAGACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGCAGTGGAGTAGGTTAAAGCCGA
62 GTGAGACAGACTGAAGATGGCAAATCTTATCTACCTAAAGTTGCAGTGGAGCAGGTTAAAGCCGA
* ** *
28044287 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGA
127 TAATCCTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAACCTTAGA
* * * *
28044334 TCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTACAGTGA
1 TCTTATCTACCTGAAGTTGCAAAGAGCAGATAGCAGCAAGTCTTATCCTCCTAAAGTTACAGTGA
** * * *
28044399 GGTAGACTGAAGATGTCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAAT
66 GACAGACTGAAGATGGCAAATCTTATCTACCTAAAGTTGCAGTGGAGCAGGTTAAAGCCGATAAT
* **
28044464 CCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
131 CCTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAACCTTAGA
* * * * * *
28044507 TCTTATCT-CTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTAT-CTCCCTGAAGTTGCAGT
1 TCTTATCTAC-CTGAAGTTGCAAAGAGCAGATAGCAGCAAGTCTTATCCT-CCTAAAGTTACAGT
* * * ** * *
28044570 G-GAGCAGACT-AAGTAAT--CAAGTCTTATCCT-CCTGAAGTTGCAGTGGGGCATACTAAATAA
64 GAGA-CAGACTGAAG--ATGGCAAATCTTAT-CTACCTAAAGTTGCAGTGGAGCA-GGTTAA-AG
* * * * * **
28044630 AC-A-AATCCTGTCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGA
123 CCGATAATCCTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAACCTTAGA
28044679 TCTTATCT
1 TCTTATCT
28044687 CTCTAAAGTT
Statistics
Matches: 311, Mismatches: 34, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
172 83 0.27
173 194 0.62
174 6 0.02
175 1 0.00
176 7 0.02
177 20 0.06
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (173 bp):
TCTTATCTACCTGAAGTTGCAAAGAGCAGATAGCAGCAAGTCTTATCCTCCTAAAGTTACAGTGA
GACAGACTGAAGATGGCAAATCTTATCTACCTAAAGTTGCAGTGGAGCAGGTTAAAGCCGATAAT
CCTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAACCTTAGA
Found at i:28044338 original size:217 final size:213
Alignment explanation
Indices: 28043944--28044391 Score: 612
Period size: 217 Copynumber: 2.1 Consensus size: 213
28043934 AAACCTTGAA
* * * * *
28043944 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGTAGAGA
1 TCTTATCTCCCTGAAGTTGCAGAGAGCAGATAGCAGCAAGTCTTATCCTCCTAAAGTTGCAGAGA
* * * *
28044009 GGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGACAAT
66 GACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
* * *
28044074 CCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCACAGATCTTATCTATCTGAAGTTGCAA
*
28044139 AGAGCAGATCGCATCTAG
196 AGAGCAGATCGCATCAAG
*
28044157 TCTTATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGA--GAGCAGA-T-AGC-AGCAAGTCTTATCCTCCTAAAGTTGC
* * *
28044221 AGTGAGACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGCAGTGGAGTAGGTTAAAGCCG
61 AGAGAGACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGCAGTGGAGCAGATTAAAGCCG
* * * * ***
28044286 ATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTATCTGAAGT
126 ACAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCACAGATCTTATCTATCTGAAGT
28044351 TGCAAAGAGCAGATCGCATCAAG
191 TGCAAAGAGCAGATCGCATCAAG
28044374 TCTTATC-CTCCTGAAGTT
1 TCTTATCTC-CCTGAAGTT
28044392 ACAGTGAGGT
Statistics
Matches: 205, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
212 1 0.00
213 20 0.10
214 7 0.03
215 1 0.00
216 3 0.01
217 173 0.84
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (213 bp):
TCTTATCTCCCTGAAGTTGCAGAGAGCAGATAGCAGCAAGTCTTATCCTCCTAAAGTTGCAGAGA
GACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
CCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCACAGATCTTATCTATCTGAAGTTGCAA
AGAGCAGATCGCATCAAG
Found at i:28044482 original size:217 final size:217
Alignment explanation
Indices: 28043984--28044528 Score: 563
Period size: 217 Copynumber: 2.5 Consensus size: 217
28043974 TCGCATCAAG
* * * * * * * * *
28043984 TCTTATCCTCCTGAAGTTGTAGAGAGGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGGTTGC
1 TCTTATCCTCCTAAAGTTGCAGTGAGACAGACTGAAGATGCCAAATCCTATCTACCTGAAGTTGC
* * * * *
28044049 AGTGGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAATCAC
66 AGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAACCAC
* * * *
28044114 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAA
131 AGATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCATCAAGTCTTATCTCCCTGAAGTTACAA
*
28044179 TGGAGCAGACTAAGCAAGCAAG
196 TGGAGCAGACTAAGCAAGCAAA
* * * * *
28044201 TCTTATCCTCTTAAAGTTGCAGTGAGACAGACTGAAGATGGCAAATCTTATGTACCTAAAGTTGC
1 TCTTATCCTCCTAAAGTTGCAGTGAGACAGACTGAAGATGCCAAATCCTATCTACCTGAAGTTGC
* * **
28044266 AGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
66 AGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAACCAC
*
28044331 GGATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCATCAAGTCTTATC-CTCCTGAAGTTACA
131 AGATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCATCAAGTCTTATCTC-CCTGAAGTTACA
* * *
28044395 GT-GAGGTAGACTGAAG-ATGTCAAA
195 ATGGA-GCAGACT-AAGCAAG-CAAA
* * * *
28044419 TCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAG
1 TCTTATCCT-CCTAAAGTTGCAGTGAGA-CAGACTGAAGATGCC-A-AATCCTATCTACCTGAAG
* * *
28044479 TTGCAGTGGAGT-GGATTAAAACC-TTAGATCTTATC-TCTCTGAAGTTGCAG
62 TTGCAGTGGAGTAGG-TTAAAGCCGATA-ATCCTATCTTC-CTGAAGTTGCAG
28044529 AGAGCAGATC
Statistics
Matches: 279, Mismatches: 38, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
215 2 0.01
216 11 0.04
217 238 0.85
218 28 0.10
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (217 bp):
TCTTATCCTCCTAAAGTTGCAGTGAGACAGACTGAAGATGCCAAATCCTATCTACCTGAAGTTGC
AGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAACCAC
AGATCTTATCTATCTGAAGTTGCAAAGAGCAGATCGCATCAAGTCTTATCTCCCTGAAGTTACAA
TGGAGCAGACTAAGCAAGCAAA
Found at i:28044658 original size:88 final size:87
Alignment explanation
Indices: 28044552--28044834 Score: 249
Period size: 88 Copynumber: 3.3 Consensus size: 87
28044542 TCTAGTCTTA
* *
28044552 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AACCAAGTCTTATCCTCCTGAAGTTGCAGTAGG
28044617 GCATACTAAATAAACAAATCCTG
65 GCATACTAAATAAACAAATCCTG
* * * *
28044640 TCTCCCTGAAGTTGCAGTGGAGTAGATTAA-AACCACAGATCTTAT-CTCTCTAAAGTTGTAGTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAACCA-AG-TCTTATCCTC-CTGAAGTTGCAGTA
* * * * * * * *
28044703 GAGTAGA-TCACAT---CGAGTCTTA
63 GGGCATACT-AAATAAACAAATCCTG
* * * * *
28044725 TCTCCCTAAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGCCTTATCC-CCTTGAAATTACAGTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AACCAAGTCTTATCCTCC-TGAAGTTGCAGTA
*
28044789 GGGCATACTAAATAAAAAAATCCTG
63 GGGCATACTAAATAAACAAATCCTG
*
28044814 TCTCCCT-AAGTTGTAGTGGAG
1 TCTCCCTGAAGTTGCAGTGGAG
28044835 TGGATTAGAG
Statistics
Matches: 149, Mismatches: 33, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
85 31 0.21
86 28 0.19
87 10 0.07
88 69 0.46
89 11 0.07
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (87 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAACCAAGTCTTATCCTCCTGAAGTTGCAGTAGGG
CATACTAAATAAACAAATCCTG
Found at i:28044820 original size:390 final size:390
Alignment explanation
Indices: 28043471--28044787 Score: 1649
Period size: 390 Copynumber: 3.4 Consensus size: 390
28043461 CCAAGCCTTG
* * * * * *
28043471 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TTGGATCTTATC-TCTCTGAAGTTACAG-A
1 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGAT-AATCCTATCTTC-CTGAAGTTGCAGTA
* * * * * *
28043533 GAGCAGA-T-CACATCTAGTCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
64 GAGTAGATTAAACATCGAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CG-AAGCAAGTC
* *
28043596 TTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTTGTAG
126 TTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAG
28043661 TGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAG
191 TGGAGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAG
* *
28043726 ATCTTATCCCTCTGAAGTTGCAGAGAGCATATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATG
256 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATG
28043791 GAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGATGGA-AA
321 GAGCAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT-GACAA
28043855 ATCTTA
385 ATCTTA
* * * * * *
28043861 TGTCCCTAAAATTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGA
1 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGATAATCCTATCTTCCTGAAGTTGCAGTAGA
* * * * * *
28043926 GTGGATTAAAACCTTGAATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCAAGTCTTAT
66 GTAGATT-AAACATCGAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGCAAGTCTTAT
** * * *
28043990 CCTCCTGAAGTTGTAGAGAGGCAGACTGAAGATGGCAAATCTTATGTCCCTGAGGTTGCAGTGGA
130 CCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGA
*
28044055 GCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAGATCT
195 GCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAGATCT
28044120 TATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGC
260 TATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGC
* *
28044185 AGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGACAGACTGAAGATGGCAAATCTT
325 AGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTT
28044250 A
390 A
* * * * * *
28044251 TGTACCTAAAGTTGCAGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGA
1 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGATAATCCTATCTTCCTGAAGTTGCAGTAGA
* * * * * * *
28044316 GTGGATTAAAACCTTG-GATCTTATCTATCTGAAGTTGCA-AAGAGCAGATCGCATCAAGTCTTA
66 GTAGATT-AAACATCGAG-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGCAAGTCTTA
* *
28044379 TCCTCCTGAAGTTACAGTGAGGTAGACTGAAGATGTCAAATCTTATCTCCCTGAAGTTGCAGTGG
129 TCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * **
28044444 AGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATC
194 AGCAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAGATC
*
28044509 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
259 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAG
* * * * * * *
28044574 CAGACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGGGGCATACT-AA-ATAAACAAATC
324 CAGACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGAT-GACAAATC
* *
28044637 CTG
388 TTA
* * * * * *
28044640 TCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACC-ACAGATCTTATC-TCTCTAAAGTTGTAGTA
1 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGATA-ATCCTATCTTC-CTGAAGTTGCAGTA
* * * * *
28044703 GAGTAGA-T-CACATCGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGC
64 GAGTAGATTAAACATCGAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TC--G-AAGCAAGT
*
28044766 CTTATCC-CCTTGAAATTACAGT
125 CTTATCCTCC-TGAAGTTACAGT
28044788 AGGGCATACT
Statistics
Matches: 818, Mismatches: 90, Indels: 37
0.87 0.10 0.04
Matches are distributed among these distances:
386 22 0.03
387 8 0.01
388 9 0.01
389 63 0.08
390 650 0.79
391 32 0.04
392 2 0.00
393 7 0.01
394 25 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (390 bp):
TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGATAATCCTATCTTCCTGAAGTTGCAGTAGA
GTAGATTAAACATCGAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGCAAGTCTTATC
CTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
CAGATTAAAGCCGACAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATCACAGATCTT
ATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCA
GACTAAGCAAGCAAGTCTTATCCTCTTAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTA
Found at i:28044834 original size:173 final size:172
Alignment explanation
Indices: 28044288--28044841 Score: 573
Period size: 173 Copynumber: 3.2 Consensus size: 172
28044278 TAAAGCCGAT
* * *** * *
28044288 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTATCTGAAGTTG
1 AATCCTGTCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
* * * * * * *
28044353 CAAAGAGCAGATCGCATCAAGTCTTATC-CTCCTGAAGTTACAGT-GAGGTAGACTGAAG-ATGT
66 CAGAGAGCAGATCACATCGAGTCTTATCTC-CCTAAAGTTGCAGTGGA-GCAGACT-AAGAAAG-
** * * *** **** *
28044415 CAAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGGTTAAAGCCGAT
127 CAAGCCTTATCCT-CCTGAAATTACAGTAGG-GCATACTAAATAAAAA
* * ** *
28044461 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTG
1 AATCCTGTCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
* * * * *
28044526 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCAAG
66 CAGAGAGCAGATCACATCGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGAAAGCAAG
* * * * *
28044591 TCTTATCCTCCTGAAGTTGCAGTGGGGCATACTAAATAAACA
131 CCTTATCCTCCTGAAATTACAGTAGGGCATACTAAATAAAAA
*
28044633 AATCCTGTCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
1 AATCCTGTCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
* *
28044698 TAGTAGAGTAGATCACATCGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
66 CAG-AGAGCAGATCACATCGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AAGAAAGCA
28044763 AGCCTTATCC-CCTTGAAATTACAGTAGGGCATACTAAATAAAAA
129 AGCCTTATCCTCC-TGAAATTACAGTAGGGCATACTAAATAAAAA
*
28044807 AATCCTGTCTCCCT-AAGTTGTAGTGGAGTGGATTA
1 AATCCTGTCTCCCTGAAGTTGCAGTGGAGTGGATTA
28044842 GAGTGATGGC
Statistics
Matches: 335, Mismatches: 38, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
172 94 0.28
173 181 0.54
174 60 0.18
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (172 bp):
AATCCTGTCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
CAGAGAGCAGATCACATCGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGAAAGCAAG
CCTTATCCTCCTGAAATTACAGTAGGGCATACTAAATAAAAA
Found at i:28045060 original size:118 final size:118
Alignment explanation
Indices: 28044847--28045082 Score: 445
Period size: 118 Copynumber: 2.0 Consensus size: 118
28044837 GATTAGAGTG
* *
28044847 ATGGCTTTTATCTCTCTGAAATTACAGTTAAGCAGATTAAAAGTTACGAGTCACCAATCCTATCT
1 ATGGATTTTATCTCTCTGAAATTACAGTTAAGCAGATTAAAAGTTACGAGTCACAAATCCTATCT
28044912 CTCCGACGTTGCGGTGGAGTGAATCGAGACACCAATTCCTATACCTCTGAAGA
66 CTCCGACGTTGCGGTGGAGTGAATCGAGACACCAATTCCTATACCTCTGAAGA
*
28044965 ATGGATTTTATCTCTCTGAAATTACAGTTAAGCATATTAAAAGTTACGAGTCACAAATCCTATCT
1 ATGGATTTTATCTCTCTGAAATTACAGTTAAGCAGATTAAAAGTTACGAGTCACAAATCCTATCT
28045030 CTCCGACGTTGCGGTGGAGTGAATCGAGACACCAATTCCTATACCTCTGAAGA
66 CTCCGACGTTGCGGTGGAGTGAATCGAGACACCAATTCCTATACCTCTGAAGA
28045083 TGCAGTAAGA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 115 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (118 bp):
ATGGATTTTATCTCTCTGAAATTACAGTTAAGCAGATTAAAAGTTACGAGTCACAAATCCTATCT
CTCCGACGTTGCGGTGGAGTGAATCGAGACACCAATTCCTATACCTCTGAAGA
Found at i:28045274 original size:17 final size:18
Alignment explanation
Indices: 28045260--28045343 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
28045250 ATAATCTTCG
28045260 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
28045278 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
28045297 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* * *
28045318 TATGATATGTAATATTAGA
1 -AGGATATGCAATCTTAGA
28045337 A-GATATG
1 AGGATATG
28045344 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 32 0.57
21 17 0.30
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:28045286 original size:19 final size:19
Alignment explanation
Indices: 28045262--28045336 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
28045252 AATCTTCGAG
28045262 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28045281 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28045300 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
* *
28045321 GATATGTAATATTAGA
1 GATATGCAATCTTAGA
28045337 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 33 0.63
21 19 0.37
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:28045308 original size:21 final size:21
Alignment explanation
Indices: 28045263--28045325 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
28045253 ATCTTCGAGG
28045263 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
28045282 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
28045303 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
28045324 AT
1 AT
28045326 GTAATATTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:28045343 original size:22 final size:23
Alignment explanation
Indices: 28045315--28045359 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
28045305 ATGCAATCTT
28045315 AGATATGA-TATGTAATATTAGA
1 AGATATGATTATGTAATATTAGA
* *
28045337 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATATTAGA
28045360 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATATTAGA
Found at i:28045369 original size:22 final size:23
Alignment explanation
Indices: 28045325--28045369 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
28045315 AGATATGATA
*
28045325 TGTAATATTAGAAGATATGATTT
1 TGTAATATTAGAAGATATAATTT
* *
28045348 TGTAATCTTAG-AGATTTAATTT
1 TGTAATATTAGAAGATATAATTT
28045370 GTAGATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATATTAGAAGATATAATTT
Found at i:28045792 original size:3 final size:3
Alignment explanation
Indices: 28045771--28045819 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
28045761 GTTTTTAGTC
28045771 TAT T-T TAT TAAT T-T TAT TAT TAT TAT TAT TA- TAT TAT ATAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
28045815 TAT TA
1 TAT TA
28045820 GTATACCTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 6 0.15
3 29 0.71
4 6 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:28045801 original size:21 final size:21
Alignment explanation
Indices: 28045771--28045824 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
28045761 GTTTTTAGTC
*
28045771 TATT-TTATTA-ATTTTATTAT
1 TATTATTATTATATTATA-TAT
28045791 TATTATTATTATATTATATAT
1 TATTATTATTATATTATATAT
*
28045812 TATTATTAGTATA
1 TATTATTATTATA
28045825 CCTACATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 4 0.13
21 21 0.70
22 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TATTATTATTATATTATATAT
Found at i:28047707 original size:28 final size:27
Alignment explanation
Indices: 28047667--28047721 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
28047657 ACATATTTAT
28047667 AATTATATTTTAATTAATAATTTTAAA
1 AATTATATTTTAATTAATAATTTTAAA
*
28047694 AATTATTATTTTAATTTATAATTTTAAA
1 AATTA-TATTTTAATTAATAATTTTAAA
28047722 TGAGTACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
AATTATATTTTAATTAATAATTTTAAA
Found at i:28048253 original size:30 final size:30
Alignment explanation
Indices: 28048219--28048280 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
28048209 ACTTATTTTA
28048219 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
28048249 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
28048279 TT
1 TT
28048281 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:28050459 original size:21 final size:19
Alignment explanation
Indices: 28050421--28050472 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
28050411 AATACATAAG
*
28050421 TAGATACAATGAGTAAATA
1 TAGATACAATGAGGAAATA
28050440 TAGATACAACATGAGGAAAT-
1 TAGATAC-A-ATGAGGAAATA
*
28050460 TAAACTACAATGA
1 TAGA-TACAATGA
28050473 TATCCAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 12 0.43
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGATACAATGAGGAAATA
Found at i:28054095 original size:16 final size:15
Alignment explanation
Indices: 28054076--28054127 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
28054066 TTAGAAAGTT
*
28054076 AAAAATTTCAAAAATTA
1 AAAAATTT-AAAAA-TG
* *
28054093 AAAAAATGAAAAATG
1 AAAAATTTAAAAATG
28054108 AAAAATTATAAAAATG
1 AAAAATT-TAAAAATG
28054124 AAAA
1 AAAA
28054128 CAAATTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 7 0.24
16 16 0.55
17 6 0.21
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAATTTAAAAATG
Found at i:28054114 original size:32 final size:33
Alignment explanation
Indices: 28054076--28054152 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 33
28054066 TTAGAAAGTT
*
28054076 AAAAATT-TCAAAAATTAAAA-AAATGAAAAATG
1 AAAAATTAT-AAAAATGAAAACAAATGAAAAATG
*
28054108 AAAAATTATAAAAATGAAAACAAATTAAAATAATAG
1 AAAAATTATAAAAATGAAAACAAA-TGAAA-AAT-G
28054144 AAAAATTAT
1 AAAAATTAT
28054153 TTTAAAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
32 17 0.45
33 4 0.11
34 4 0.11
35 3 0.08
36 10 0.26
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (33 bp):
AAAAATTATAAAAATGAAAACAAATGAAAAATG
Found at i:28054134 original size:19 final size:20
Alignment explanation
Indices: 28054110--28054147 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
28054100 GAAAAATGAA
28054110 AAATTATAAA-AAT-GAAAAC
1 AAATTA-AAATAATAGAAAAC
28054129 AAATTAAAATAATAGAAAA
1 AAATTAAAATAATAGAAAA
28054148 ATTATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 9 0.53
20 5 0.29
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATTAAAATAATAGAAAAC
Found at i:28054210 original size:10 final size:9
Alignment explanation
Indices: 28054163--28054209 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
28054153 TTTAAAATAT
28054163 AATTTTAAA
1 AATTTTAAA
* *
28054172 TATTATAAAA
1 AATT-TTAAA
*
28054182 AATTATAAA
1 AATTTTAAA
28054191 AATTTT-AA
1 AATTTTAAA
28054199 AATTTTAAA
1 AATTTTAAA
28054208 AA
1 AA
28054210 AATAAAATGC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
8 8 0.27
9 15 0.50
10 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTTTAAA
Found at i:28061429 original size:20 final size:20
Alignment explanation
Indices: 28061404--28061445 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
28061394 GAAGAAGTAT
28061404 GTTGGCCAGGTATACATTGA
1 GTTGGCCAGGTATACATTGA
*
28061424 GTTGGCCAGTTATACATTGA
1 GTTGGCCAGGTATACATTGA
28061444 GT
1 GT
28061446 GAAAGAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (20 bp):
GTTGGCCAGGTATACATTGA
Found at i:28064546 original size:3 final size:3
Alignment explanation
Indices: 28064538--28064563 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
28064528 GGCATTAGTT
28064538 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
28064564 TATTGAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:28066676 original size:20 final size:19
Alignment explanation
Indices: 28066660--28066699 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
28066650 CATAGAGAGG
28066660 AATTGAAGTAGATAGAGCAAA
1 AATTGAAGT-GATAGAG-AAA
28066681 AATTGAAGTGATAGAGAAA
1 AATTGAAGTGATAGAGAAA
28066700 TTGCCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 7 0.37
21 9 0.47
ACGTcount: A:0.53, C:0.03, G:0.25, T:0.20
Consensus pattern (19 bp):
AATTGAAGTGATAGAGAAA
Found at i:28072999 original size:25 final size:26
Alignment explanation
Indices: 28072953--28073001 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
28072943 GCTTAATGTC
* *
28072953 AAAAATTTAAAAATCTGATCCTTAAT
1 AAAAACTTAAAAAACTGATCCTTAAT
*
28072979 AAAAACTTAAAAAAC-GTTCCTTA
1 AAAAACTTAAAAAACTGATCCTTA
28073002 TTAAGACTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAAACTTAAAAAACTGATCCTTAAT
Found at i:28074082 original size:3 final size:3
Alignment explanation
Indices: 28074074--28074103 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
28074064 AAAAATAAAC
28074074 ATA ATA ATA ATA ATA ATAA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA AT
28074104 GATACAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:28074607 original size:19 final size:19
Alignment explanation
Indices: 28074583--28074633 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
28074573 CATATCTTCT
28074583 AAGATTGCATATCATATCC
1 AAGATTGCATATCATATCC
* *
28074602 AAGATTACATATCATATCT
1 AAGATTGCATATCATATCC
28074621 AAGATTGCATATC
1 AAGATTGCATATC
28074634 CTTGAAGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (19 bp):
AAGATTGCATATCATATCC
Found at i:28077479 original size:27 final size:27
Alignment explanation
Indices: 28077449--28077500 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
28077439 TATTTTTCCC
28077449 ATTCTATTAGTATTAGATTAGTATTCT
1 ATTCTATTAGTATTAGATTAGTATTCT
*
28077476 ATTCTATTAGTATTAGATTATTATT
1 ATTCTATTAGTATTAGATTAGTATT
28077501 AGTTAGTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (27 bp):
ATTCTATTAGTATTAGATTAGTATTCT
Found at i:28079872 original size:31 final size:31
Alignment explanation
Indices: 28079779--28079872 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
28079769 AGATAATTTT
* *
28079779 AAAGAGTTTTATTAGGATTCAATTAATCTTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
28079810 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
28079842 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
28079873 TAATTTGCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 31 0.52
32 29 0.48
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.44
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:28080446 original size:7 final size:8
Alignment explanation
Indices: 28080418--28080476 Score: 57
Period size: 8 Copynumber: 6.8 Consensus size: 8
28080408 TTCTTTAAAT
28080418 AAAAGCAAA
1 AAAAGC-AA
28080427 AAACAGCAAA
1 AAA-AGC-AA
28080437 AAAAGCAA
1 AAAAGCAA
28080445 AAAAGCGTAAA
1 AAAAGC---AA
28080456 AAAAGC-A
1 AAAAGCAA
28080463 AAAAGCAA
1 AAAAGCAA
28080471 AAAAGC
1 AAAAGC
28080477 GCAAAAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
7 7 0.16
8 15 0.33
9 6 0.13
10 9 0.20
11 8 0.18
ACGTcount: A:0.71, C:0.14, G:0.14, T:0.02
Consensus pattern (8 bp):
AAAAGCAA
Found at i:28080446 original size:8 final size:9
Alignment explanation
Indices: 28080418--28080485 Score: 70
Period size: 10 Copynumber: 7.4 Consensus size: 9
28080408 TTCTTTAAAT
28080418 AAAAGCAAA
1 AAAAGCAAA
28080427 AAACAGCAAA
1 AAA-AGCAAA
28080437 AAAAGC-AA
1 AAAAGCAAA
28080445 AAAAGCGTAAA
1 AAAAGC--AAA
28080456 AAAAGC--A
1 AAAAGCAAA
28080463 AAAAGCAAA
1 AAAAGCAAA
*
28080472 AAAGCGCAAA
1 AAA-AGCAAA
28080482 AAAA
1 AAAA
28080486 AAGTTGCCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
7 7 0.14
8 8 0.16
9 10 0.20
10 17 0.34
11 8 0.16
ACGTcount: A:0.72, C:0.13, G:0.13, T:0.01
Consensus pattern (9 bp):
AAAAGCAAA
Found at i:28080465 original size:26 final size:26
Alignment explanation
Indices: 28080422--28080485 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 26
28080412 TTAAATAAAA
28080422 GCAAAAAACAGCAAAAAAAGCAAAAAAGC
1 GCAAAAAA-AGC--AAAAAGCAAAAAAGC
*
28080451 GTAAAAAAAGCAAAAAGCAAAAAAGC
1 GCAAAAAAAGCAAAAAGCAAAAAAGC
28080477 GCAAAAAAA
1 GCAAAAAAA
28080486 AAGTTGCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 23 0.70
28 3 0.09
29 7 0.21
ACGTcount: A:0.70, C:0.14, G:0.14, T:0.02
Consensus pattern (26 bp):
GCAAAAAAAGCAAAAAGCAAAAAAGC
Found at i:28080485 original size:19 final size:19
Alignment explanation
Indices: 28080418--28080466 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
28080408 TTCTTTAAAT
28080418 AAAAGCAAAAAACAGCAAA
1 AAAAGCAAAAAACAGCAAA
*
28080437 AAAAGCAAAAAAGC-GTAAA
1 AAAAGCAAAAAA-CAGCAAA
28080456 AAAAGCAAAAA
1 AAAAGCAAAAA
28080467 GCAAAAAAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 27 0.96
20 1 0.04
ACGTcount: A:0.73, C:0.12, G:0.12, T:0.02
Consensus pattern (19 bp):
AAAAGCAAAAAACAGCAAA
Found at i:28086099 original size:31 final size:31
Alignment explanation
Indices: 28086006--28086099 Score: 134
Period size: 31 Copynumber: 3.0 Consensus size: 31
28085996 AGATAATTTT
* * *
28086006 AAAGAGTTTTATTAAGATTAAATTAATCTTT
1 AAAGAGTTTTATTAAGATTCAATTACTCTTG
*
28086037 AAAGAGTTTTTATTACGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAAGATTCAATTACTCTTG
*
28086069 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAAGATTCAATTACTCTTG
28086100 TAATTTGCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
31 30 0.53
32 27 0.47
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.44
Consensus pattern (31 bp):
AAAGAGTTTTATTAAGATTCAATTACTCTTG
Found at i:28091844 original size:17 final size:17
Alignment explanation
Indices: 28091818--28091850 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28091808 TCGTGTTCAC
*
28091818 TAGGCGATACTATCCGT
1 TAGGCAATACTATCCGT
28091835 TAGGCAATACTATCCG
1 TAGGCAATACTATCCG
28091851 CAAAACGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (17 bp):
TAGGCAATACTATCCGT
Found at i:28092979 original size:69 final size:69
Alignment explanation
Indices: 28092858--28093052 Score: 259
Period size: 69 Copynumber: 2.8 Consensus size: 69
28092848 ACTCTAACAT
*
28092858 TAAGACCATAGTTGGGGCTATGGCAACATATGAAGTCTGC-CAA-GACAATAAACATGGGATCAT
1 TAAGACCATAGCTGGGGCTATGGCAACATATGAAGTC--CACAAGGACAATAAACATGGGATCAT
28092921 ATTGTG
64 ATTGTG
* * * * * * *
28092927 TAAGACCACAGCTAGGGTTATGGCAACATATAAAGTCCATAAGGACAGTAAACATGGGATCTTAT
1 TAAGACCATAGCTGGGGCTATGGCAACATATGAAGTCCACAAGGACAATAAACATGGGATCATAT
28092992 TGTG
66 TGTG
* * *
28092996 TAAGACCATAGCTGGGGCTATGGCAACATTTGAACTCCACCAGGACAATAAACATGG
1 TAAGACCATAGCTGGGGCTATGGCAACATATGAAGTCCACAAGGACAATAAACATGG
28093053 CAGCATATGG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
67 1 0.01
68 2 0.02
69 104 0.97
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (69 bp):
TAAGACCATAGCTGGGGCTATGGCAACATATGAAGTCCACAAGGACAATAAACATGGGATCATAT
TGTG
Found at i:28095628 original size:14 final size:15
Alignment explanation
Indices: 28095611--28095643 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
28095601 TTCTCATTTG
28095611 CTTTTTCTCTC-TTT
1 CTTTTTCTCTCTTTT
*
28095625 CTTTTTCTTTCTTTT
1 CTTTTTCTCTCTTTT
28095640 CTTT
1 CTTT
28095644 GATAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
CTTTTTCTCTCTTTT
Found at i:28097936 original size:25 final size:24
Alignment explanation
Indices: 28097881--28097974 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 24
28097871 GTTCATACCC
* *
28097881 ACAGCTCGTGTGAGCATATCGATTT
1 ACAGCTCGTGAGAGCATACCGA-TT
* *
28097906 ATAGCTTGTGAGAGCATACCGATCT
1 ACAGCTCGTGAGAGCATACCGAT-T
* *
28097931 ACAGCTCGAGTGAGCATACCGATT
1 ACAGCTCGTGAGAGCATACCGATT
28097955 CACAGCTCGT-ATGAGCATAC
1 -ACAGCTCGTGA-GAGCATAC
28097975 ATGTATATGA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.04
25 54 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
ACAGCTCGTGAGAGCATACCGATT
Found at i:28103033 original size:18 final size:18
Alignment explanation
Indices: 28103010--28103046 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
28103000 AATCAATTTA
28103010 TATTACGTAAAACTGAAT
1 TATTACGTAAAACTGAAT
28103028 TATTACGTAAAACTGAAT
1 TATTACGTAAAACTGAAT
28103046 T
1 T
28103047 TATATTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (18 bp):
TATTACGTAAAACTGAAT
Found at i:28103289 original size:20 final size:18
Alignment explanation
Indices: 28103238--28103286 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
28103228 ATTTGGCATA
28103238 TAACAGAATAATTTTTTAT
1 TAACA-AATAATTTTTTAT
* *
28103257 AAACATATCAATTTTTTATT
1 TAACAAAT-AATTTTTTA-T
28103277 TAACAAATAA
1 TAACAAATAA
28103287 ATTATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 7 0.29
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (18 bp):
TAACAAATAATTTTTTAT
Found at i:28108685 original size:244 final size:244
Alignment explanation
Indices: 28108038--28109259 Score: 2302
Period size: 244 Copynumber: 5.0 Consensus size: 244
28108028 CGTAAGAAAC
28108038 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
1 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
*
28108103 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTAGGATGTGGTGTAGGCATCAATG
66 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
*
28108168 TCCCTTGTTGGGTTGGAATTGATAATAAATTCATCATGCCACGTGCTTCGGACCTACGATTCTGG
131 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
28108233 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
196 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
*
28108282 ACACTTAGAGGAGGTG-AGAAGCGTGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
1 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
*
28108346 GGGGTTCGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
66 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
*
28108411 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCATGTGCTTCGGACCTACGATTCTGG
131 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
28108476 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
196 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
*
28108525 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTTGTACTTGTGTAAAATACAT
1 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
28108590 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
66 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
* *
28108655 TCCCTTGTTGGGTTGGAATTGATAATAAATTTGTCATGCCACGTGCTTCAGACCTACGATTCTGG
131 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
*
28108720 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACACCTCGCCTCCATTG
196 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
*
28108769 ACACTTAGAGGAGGTGTAGAAGCGTGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
1 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
28108834 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
66 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
*
28108899 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGAGCTTCGGACCTACGATTCTGG
131 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
28108964 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
196 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
28109013 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
1 ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
28109078 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
66 GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
* *
28109143 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGAGCTTCGGACCTATGATTCTGG
131 TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
* *
28109208 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTATGCCTCGCCTCTATTG
196 GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
28109257 ACA
1 ACA
28109260 GTAGATATGG
Statistics
Matches: 955, Mismatches: 22, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
243 238 0.25
244 717 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (244 bp):
ACACTTAGAGGAGGTGTAGAAGCATGGTGCAATGGTGCATAGTGTGGTACTTGTGTAAAATACAT
GGGGTTAGTGAAAGGAACAAGAAAATATGAAAGGAAATGACTGGGATGTGGTGTAGGCATCAATG
TCCCTTGTTGGGTTGGAATTGATAATAAATTCGTCATGCCACGTGCTTCGGACCTACGATTCTGG
GGCAGTCGTCGTGGCCTTAGACAAATTTGCCTACGCCTCGCCTCCATTG
Found at i:28111523 original size:62 final size:61
Alignment explanation
Indices: 28111426--28111549 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 61
28111416 ATCTGTCAAA
28111426 TGTTCTTATACTTTTTGAAATTTAAAATTTAATCATTCCATTTTTTTATTTAGAAATTTTGT
1 TGTTCTTATACTTTTTGAAATTTAAAATTTAATCATTCCA-TTTTTTATTTAGAAATTTTGT
28111488 TGTTCTTATACTTTTTGAAATTTAAAATTTAATCATTCCATTTTTTATTTAGAAATTTTGT
1 TGTTCTTATACTTTTTGAAATTTAAAATTTAATCATTCCATTTTTTATTTAGAAATTTTGT
28111549 T
1 T
28111550 TTCACCGTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 22 0.35
62 40 0.65
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (61 bp):
TGTTCTTATACTTTTTGAAATTTAAAATTTAATCATTCCATTTTTTATTTAGAAATTTTGT
Found at i:28112570 original size:21 final size:20
Alignment explanation
Indices: 28112532--28112570 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
28112522 GGTTCAACTG
*
28112532 CTAGTTCAACTGTTTGTAGC
1 CTAGTTCAACCGTTTGTAGC
28112552 CTAGTTCAACCGATTTGTA
1 CTAGTTCAACCG-TTTGTA
28112571 CTGTTCAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (20 bp):
CTAGTTCAACCGTTTGTAGC
Found at i:28113470 original size:15 final size:15
Alignment explanation
Indices: 28113443--28113485 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
28113433 TGAATTTTGG
28113443 AATTTTTTATATTATA
1 AATTTTTT-TATTATA
* *
28113459 AATTTTTTTATTTTT
1 AATTTTTTTATTATA
*
28113474 TATTTTTTTATT
1 AATTTTTTTATT
28113486 TTTTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
AATTTTTTTATTATA
Found at i:28113474 original size:7 final size:7
Alignment explanation
Indices: 28113462--28113504 Score: 77
Period size: 7 Copynumber: 6.0 Consensus size: 7
28113452 TATTATAAAT
28113462 TTTTTTA
1 TTTTTTA
28113469 TTTTTTA
1 TTTTTTA
28113476 TTTTTTTA
1 -TTTTTTA
28113484 TTTTTTA
1 TTTTTTA
28113491 TTTTTTA
1 TTTTTTA
28113498 TTTTTTA
1 TTTTTTA
28113505 ATAACTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 28 0.80
8 7 0.20
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:28113477 original size:22 final size:22
Alignment explanation
Indices: 28113446--28113500 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
28113436 ATTTTGGAAT
28113446 TTTTTATATTATAAAT-TTTTTTA
1 TTTTT-TATT-TAAATATTTTTTA
***
28113469 TTTTTTATTTTTTTATTTTTTA
1 TTTTTTATTTAAATATTTTTTA
28113491 TTTTTTATTT
1 TTTTTTATTT
28113501 TTTAATAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 21 0.75
23 5 0.18
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTATTTAAATATTTTTTA
Found at i:28113486 original size:15 final size:15
Alignment explanation
Indices: 28113460--28113504 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
28113450 TATATTATAA
28113460 ATTTTTTTATTTTTT
1 ATTTTTTTATTTTTT
28113475 ATTTTTTTATTTTTT
1 ATTTTTTTATTTTTT
28113490 A-TTTTTTATTTTTT
1 ATTTTTTTATTTTTT
28113504 A
1 A
28113505 ATAACTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
ATTTTTTTATTTTTT
Found at i:28113501 original size:22 final size:22
Alignment explanation
Indices: 28113462--28113503 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
28113452 TATTATAAAT
28113462 TTTTTTATTTTTTATTTTTTTA
1 TTTTTTATTTTTTATTTTTTTA
28113484 TTTTTTATTTTTTATTTTTT
1 TTTTTTATTTTTTATTTTTT
28113504 AATAACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (22 bp):
TTTTTTATTTTTTATTTTTTTA
Found at i:28116307 original size:63 final size:63
Alignment explanation
Indices: 28116230--28116351 Score: 210
Period size: 63 Copynumber: 1.9 Consensus size: 63
28116220 AATTTATCCA
*
28116230 TAATTTTTATTGTATGAAATATTTTAATACATAAACTTAGAT-TTATAGTTAAAACCTTATTGC
1 TAATTTTTATTGTATGAAATATTTTAATACATAAACTTAGATCCT-TAGTTAAAACCTTATTGC
*
28116293 TAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATCCTTAGTTAAAACCTTA
1 TAATTTTTATTGTATGAAATATTTTAATACATAAACTTAGATCCTTAGTTAAAACCTTA
28116352 AAATATAGAA
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
63 55 0.98
64 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (63 bp):
TAATTTTTATTGTATGAAATATTTTAATACATAAACTTAGATCCTTAGTTAAAACCTTATTGC
Found at i:28117160 original size:26 final size:26
Alignment explanation
Indices: 28117127--28117176 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
28117117 TAAATATATA
28117127 TTTTTATTTTTTAATTTTAAAATACT
1 TTTTTATTTTTTAATTTTAAAATACT
*
28117153 TTTTTATTTTTTATTTTTAAAATA
1 TTTTTATTTTTTAATTTTAAAATA
28117177 AATATTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTATTTTTTAATTTTAAAATACT
Found at i:28127824 original size:23 final size:23
Alignment explanation
Indices: 28127770--28127824 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
28127760 GATTATGCAT
* *
28127770 TTCGATGCAATTAATATTGGCAC
1 TTCGATGCAACTAATACTGGCAC
* *
28127793 TAT-GGTGCAACTGATACTGGCAC
1 T-TCGATGCAACTAATACTGGCAC
28127816 TTCGATGCA
1 TTCGATGCA
28127825 TTACTGTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (23 bp):
TTCGATGCAACTAATACTGGCAC
Found at i:28138629 original size:12 final size:12
Alignment explanation
Indices: 28138612--28138641 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
28138602 AGTCACACAC
28138612 CCGTGTGCTAGG
1 CCGTGTGCTAGG
28138624 CCGTGTGCTAGG
1 CCGTGTGCTAGG
28138636 CCGTGT
1 CCGTGT
28138642 AACAGCCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:28139827 original size:25 final size:24
Alignment explanation
Indices: 28139788--28139874 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 24
28139778 TCATGTACAT
* *
28139788 GTATGCTTATACGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGT-AATCG
* * *
28139813 ATATGCTCACTCGAGTTGTAGATCG
1 GTATGCTCACACGAGCTGTA-ATCG
* *
28139838 GTATGCTCTCACGAGCTATAAATCG
1 GTATGCTCACACGAGCTGT-AATCG
28139863 GTATGCTCACAC
1 GTATGCTCACAC
28139875 AAGTTGTGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
GTATGCTCACACGAGCTGTAATCG
Found at i:28145336 original size:24 final size:24
Alignment explanation
Indices: 28145292--28145337 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
28145282 GGACAAGCTG
* *
28145292 AAATTTCCAACAGGGAAATTAAAC
1 AAATTTCCAACAAGCAAATTAAAC
*
28145316 AAATTTCCAACAAGCATATTAA
1 AAATTTCCAACAAGCAAATTAA
28145338 TGATGATGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.09, T:0.24
Consensus pattern (24 bp):
AAATTTCCAACAAGCAAATTAAAC
Found at i:28147496 original size:49 final size:49
Alignment explanation
Indices: 28147432--28147546 Score: 135
Period size: 49 Copynumber: 2.3 Consensus size: 49
28147422 GCAGTGTGGT
* * * ** *
28147432 AGGCTGTGTGGAGCACACGGTCGTTTGAAACAT-TGTAGACCGTGTGGCC
1 AGGCCGTGTGGAGCACACGATCGTGTGAAAC-TCTACAGACCGTATGGCC
28147481 AGGCCGTGTGGAGCACACGATCGTGTGAAACTCTACAGACCGTATGGCC
1 AGGCCGTGTGGAGCACACGATCGTGTGAAACTCTACAGACCGTATGGCC
*
28147530 AGACCGTGTAGG-GCACA
1 AGGCCGTGT-GGAGCACA
28147547 TGGCCATGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 54 0.95
50 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.20
Consensus pattern (49 bp):
AGGCCGTGTGGAGCACACGATCGTGTGAAACTCTACAGACCGTATGGCC
Found at i:28147557 original size:49 final size:49
Alignment explanation
Indices: 28147468--28147561 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
28147458 GAAACATTGT
* * * *
28147468 AGACCGTGTGGCCAGGCCGTGTGGAGCACACGATCGTGTGAAACTCTAC
1 AGACCGTATGGCCAGACCGTGTGGAGCACACGACCATGTGAAACTCTAC
* *
28147517 AGACCGTATGGCCAGACCGTGTAGG-GCACATGGCCATGTGAAACT
1 AGACCGTATGGCCAGACCGTGT-GGAGCACACGACCATGTGAAACT
28147562 TTATAGATCG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 36 0.95
50 2 0.05
ACGTcount: A:0.24, C:0.26, G:0.32, T:0.18
Consensus pattern (49 bp):
AGACCGTATGGCCAGACCGTGTGGAGCACACGACCATGTGAAACTCTAC
Found at i:28171215 original size:53 final size:53
Alignment explanation
Indices: 28171135--28171242 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 53
28171125 ATTTACACGG
*
28171135 CCGTGTGACAAAGCCCAGGCCATGTGGCATAGGGACATGGCCATGTGGCCAAA
1 CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
* * *
28171188 CCGTGTGATAAAGCCCAGGCCGCGTGGCATTGGGACATGGCCATGTGGCCAAA
1 CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
28171241 CC
1 CC
28171243 ATGTAACTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.24, C:0.28, G:0.32, T:0.16
Consensus pattern (53 bp):
CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
Found at i:28174827 original size:27 final size:26
Alignment explanation
Indices: 28174777--28175021 Score: 229
Period size: 27 Copynumber: 9.1 Consensus size: 26
28174767 TATAATAGTT
* *
28174777 ATTTTACCCTATAGAGGTAATTCGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* * *
28174804 ATTTTACCCTATAGGCGTATTTCGATT
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* *
28174831 ATTCTACCATATGGGGGTATTTCGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* **
28174858 ATATTACCCTATGGGGGTATTTCAATC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
*
28174885 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* * *
28174912 ATTCTACCATATAGGGGTATTTAGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* * *
28174939 ATTTTACCCTATGGATGAATTTCAGTC
1 ATTTTACCCTATGG-GGTATTTCGGTC
*
28174966 ATTCTACCCTATGTGGGTATTTCGGTC
1 ATTTTACCCTATG-GGGTATTTCGGTC
* *
28174993 ATTTTACCCTATGGAGTTATTTTGGTC
1 ATTTTACCCTATGG-GGTATTTCGGTC
28175020 AT
1 AT
28175022 AACAGTGTAA
Statistics
Matches: 179, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.02
27 175 0.98
28 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (26 bp):
ATTTTACCCTATGGGGTATTTCGGTC
Found at i:28174905 original size:81 final size:81
Alignment explanation
Indices: 28174780--28175022 Score: 281
Period size: 81 Copynumber: 3.0 Consensus size: 81
28174770 AATAGTTATT
* ** * * *
28174780 TTACCCTATAGAGGTAA-TTCGGTCATTTTACCCTATAGGCGTATTTCGATTATTCTACCATATG
1 TTACCCTATGGAGG-AATTTCAATCATTTTACCCTATGGGGGTATTTCGATCATTCTACCATATG
*
28174844 GGGGTATTTCGGTCATA
65 GGGGTATTTAGGTCATA
* * *
28174861 TTACCCTATGGGGGTATTTCAATCATTTTACCCTATGGGGGTATTTCGATCATTCTACCATATAG
1 TTACCCTATGGAGGAATTTCAATCATTTTACCCTATGGGGGTATTTCGATCATTCTACCATATGG
*
28174926 GGGTATTTAGGTCATT
66 GGGTATTTAGGTCATA
* * * * * * *
28174942 TTACCCTATGGATGAATTTCAGTCATTCTACCCTATGTGGGTATTTCGGTCATTTTACCCTATGG
1 TTACCCTATGGAGGAATTTCAATCATTTTACCCTATGGGGGTATTTCGATCATTCTACCATATGG
* * *
28175007 AGTTATTTTGGTCATA
66 GGGTATTTAGGTCATA
28175023 ACAGTGTAAA
Statistics
Matches: 136, Mismatches: 25, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
80 1 0.01
81 135 0.99
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (81 bp):
TTACCCTATGGAGGAATTTCAATCATTTTACCCTATGGGGGTATTTCGATCATTCTACCATATGG
GGGTATTTAGGTCATA
Found at i:28183543 original size:36 final size:36
Alignment explanation
Indices: 28183493--28183570 Score: 129
Period size: 36 Copynumber: 2.2 Consensus size: 36
28183483 TTTTGTTGAC
** *
28183493 ATAAAACTTTTGAATAACTTAGAATACTTAATAATT
1 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
28183529 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
1 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
28183565 ATAAAA
1 ATAAAA
28183571 AATTCAGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (36 bp):
ATAAAACTCATGAATAACTTAAAATACTTAATAATT
Found at i:28190756 original size:25 final size:25
Alignment explanation
Indices: 28190728--28190860 Score: 135
Period size: 25 Copynumber: 5.3 Consensus size: 25
28190718 AACTCATGAA
*
28190728 AGCATACTGATTTAAAGCTTGTGTG
1 AGCATACTGATTTAAAGCTCGTGTG
*
28190753 AGCATACTGATTTACAA-CTCGTGAG
1 AGCATACTGATTTA-AAGCTCGTGTG
* *
28190778 AGCATACTGATGTTACAGCTTGTGTG
1 AGCATACTGAT-TTAAAGCTCGTGTG
* * * *
28190804 CGCATA-TCAATTTACAGCTCGTGAG
1 AGCATACT-GATTTAAAGCTCGTGTG
* *
28190829 AGCATACTGATTTATAGCTCGAGTG
1 AGCATACTGATTTAAAGCTCGTGTG
28190854 AGCATAC
1 AGCATAC
28190861 ATGTACATGA
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
25 70 0.79
26 19 0.21
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (25 bp):
AGCATACTGATTTAAAGCTCGTGTG
Found at i:28190817 original size:51 final size:50
Alignment explanation
Indices: 28190716--28190860 Score: 184
Period size: 51 Copynumber: 2.9 Consensus size: 50
28190706 GGTCTGACCC
* * *
28190716 ACAACTCATGAAAGCATACTGATTTAAAGCTTGTGTGAGCATACTGATTT
1 ACAACTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATACTAATTT
* *
28190766 ACAACTCGTGAGAGCATACTGATGTTACAGCTTGTGTGCGCATA-TCAATTT
1 ACAACTCGTGAGAGCATACTGAT-TTAAAGCTTGTGTGAGCATACT-AATTT
* * * *
28190817 ACAGCTCGTGAGAGCATACTGATTTATAGCTCGAGTGAGCATAC
1 ACAACTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATAC
28190861 ATGTACATGA
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
50 38 0.46
51 44 0.54
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (50 bp):
ACAACTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATACTAATTT
Found at i:28214748 original size:9 final size:9
Alignment explanation
Indices: 28214730--28214807 Score: 61
Period size: 9 Copynumber: 8.4 Consensus size: 9
28214720 CTTGATAACA
28214730 TTTTATTATT
1 TTTTA-TATT
28214740 TTTTATATT
1 TTTTATATT
28214749 TTTTATGA-T
1 TTTTAT-ATT
**
28214758 TTTTATAAAA
1 TTTTAT-ATT
*
28214768 TTTTAAATT
1 TTTTATATT
28214777 TTCTTATATT
1 TT-TTATATT
* *
28214787 TTTTAAAAT
1 TTTTATATT
28214796 TTTTAT-TT
1 TTTTATATT
28214804 TTTT
1 TTTT
28214808 CTAATTTTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
8 5 0.09
9 31 0.56
10 19 0.35
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.71
Consensus pattern (9 bp):
TTTTATATT
Found at i:28214771 original size:28 final size:27
Alignment explanation
Indices: 28214740--28214851 Score: 97
Period size: 28 Copynumber: 4.1 Consensus size: 27
28214730 TTTTATTATT
28214740 TTTTATATTTTTTATGATTTTTATAAAA
1 TTTTATATTTTTTAT-ATTTTTATAAAA
*
28214768 TTTTAAATTTTCTTATATTTTT-TAAAA
1 TTTTATATTTT-TTATATTTTTATAAAA
* * *
28214795 TTTT-TATTTTTTTCTAATTTTAATAAAT
1 TTTTATA-TTTTTTAT-ATTTTTATAAAA
* *
28214823 TTTTA-ATATTTGA-ATTTTTATTAAAA
1 TTTTATATTTTTTATATTTTTA-TAAAA
28214849 TTT
1 TTT
28214852 AATAATATTA
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
25 6 0.09
26 11 0.16
27 22 0.32
28 25 0.37
29 4 0.06
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTTATATTTTTTATATTTTTATAAAA
Found at i:28214792 original size:19 final size:17
Alignment explanation
Indices: 28214768--28214807 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
28214758 TTTTATAAAA
*
28214768 TTTTAAATTTTCTTATATT
1 TTTTAAAATTT-TTAT-TT
28214787 TTTTAAAATTTTTATTT
1 TTTTAAAATTTTTATTT
28214804 TTTT
1 TTTT
28214808 CTAATTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 4 0.20
19 10 0.50
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAAAATTTTTATTT
Found at i:28214805 original size:27 final size:27
Alignment explanation
Indices: 28214739--28214827 Score: 81
Period size: 29 Copynumber: 3.2 Consensus size: 27
28214729 ATTTTATTAT
* *
28214739 TTTTTATATTTTTTATGATTTTTATAAAA
1 TTTTTAT-TTTTTTATAATTTTAAT-AAA
* * * *
28214768 TTTTAAATTTTCTTATATTTTTTA-AAA
1 TTTT-TATTTTTTTATAATTTTAATAAA
*
28214795 TTTTTATTTTTTTCTAATTTTAATAAA
1 TTTTTATTTTTTTATAATTTTAATAAA
28214822 TTTTTA
1 TTTTTA
28214828 ATATTTGAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 14 0.29
27 16 0.33
29 17 0.35
30 2 0.04
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTTTATTTTTTTATAATTTTAATAAA
Found at i:28215033 original size:94 final size:90
Alignment explanation
Indices: 28214908--28215228 Score: 371
Period size: 94 Copynumber: 3.5 Consensus size: 90
28214898 ATTTTTTAAT
* **
28214908 AAAAGCATGGGCTTAATTGA-TTTTTTTGAAAAAGTTCAAGGGCCTTTTTGATGCATTTTGAAAG
1 AAAAGCA-GGGCTTAATT-ACTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAAAG
* *
28214972 TTCAAATACCCAATTGAGTGCAAAAAA
64 TTCAAGTACCCAAATGAGTGCAAAAAA
* * ** *
28214999 AAAAGTAGGGCCTTAGTTTTTTTTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGCATTTTGAA
1 AAAAGCAGGG-CTTA---ATTACTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAA
28215064 AGTTCAAGTACCCAAATGAGTGCAAAAAA
62 AGTTCAAGTACCCAAATGAGTGCAAAAAA
* *
28215093 AAAAGCAGGGCTTAATTACTTTTTTTGAAAAGGTTTGAGGGCGTTTTTGATACATTTTGAAAGTT
1 AAAAGCAGGGCTTAATTACTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTT
*
28215158 CAAGTACCCAAATGAGTG--TAAAA
66 CAAGTACCCAAATGAGTGCAAAAAA
* * * * * * *
28215181 ACAAGTAGGGGCTTTATTGCTTTGTTTGAAAAAGTTTTAGGG-CTTTTT
1 AAAAGCA-GGGCTTAATTACTTTTTTTGAAAAGGTTTGAGGGCCTTTTT
28215229 ACACCCTTAA
Statistics
Matches: 199, Mismatches: 25, Indels: 15
0.83 0.10 0.06
Matches are distributed among these distances:
88 14 0.07
89 29 0.15
90 66 0.33
91 10 0.05
93 4 0.02
94 76 0.38
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (90 bp):
AAAAGCAGGGCTTAATTACTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTT
CAAGTACCCAAATGAGTGCAAAAAA
Found at i:28218411 original size:38 final size:38
Alignment explanation
Indices: 28218360--28218442 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 38
28218350 AAACGTACTA
* * *
28218360 TTATTTAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTAAGTGCCGGTG
*
28218398 TTATTCAGGCTTAGTGCCTAGTAGGCTAAGTGCCGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTAAGTGCCGGTG
28218436 TTATTCA
1 TTATTCA
28218443 AACTTATTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.36
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTAAGTGCCGGTG
Found at i:28237656 original size:107 final size:107
Alignment explanation
Indices: 28237446--28237658 Score: 322
Period size: 107 Copynumber: 2.0 Consensus size: 107
28237436 TTGTGCAGGT
28237446 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * * *
28237511 CACTAACTATTTCTAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
*
28237553 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28237618 CACCAACTGTTT-TTAGAATCTTTTTACCTATAT-AATAAGGC
66 CACCAACTATTTCTAAG-AT-TTTTTACCTATATCAATAAGGC
28237659 TTGCTAAGAT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
106 3 0.03
107 82 0.85
108 11 0.11
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
Found at i:28241198 original size:107 final size:107
Alignment explanation
Indices: 28240988--28241200 Score: 322
Period size: 107 Copynumber: 2.0 Consensus size: 107
28240978 TTGTGCAGGT
28240988 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * * *
28241053 CACTAACTATTTCTAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
*
28241095 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28241160 CACCAACTGTTT-TTAGAATCTTTTTACCTATAT-AATAAGGC
66 CACCAACTATTTCTAAG-AT-TTTTTACCTATATCAATAAGGC
28241201 TTGCTAAGAT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
106 3 0.03
107 82 0.85
108 11 0.11
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
Found at i:28241895 original size:107 final size:108
Alignment explanation
Indices: 28241699--28241899 Score: 334
Period size: 107 Copynumber: 1.9 Consensus size: 108
28241689 TTGTGCAGGT
28241699 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28241764 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28241807 ACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28241871 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28241900 ATATAATAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
106 1 0.01
107 58 0.67
108 28 0.32
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28243315 original size:107 final size:108
Alignment explanation
Indices: 28243119--28243319 Score: 334
Period size: 107 Copynumber: 1.9 Consensus size: 108
28243109 TTGTGCAGGT
28243119 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28243184 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28243227 ACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28243291 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28243320 ATATAATAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
106 1 0.01
107 58 0.67
108 28 0.32
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28244020 original size:107 final size:106
Alignment explanation
Indices: 28243835--28244034 Score: 305
Period size: 107 Copynumber: 1.9 Consensus size: 106
28243825 GGTATCTTTG
*
28243835 TTGGAATTTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCT
1 TTGGAATTTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACCAACTATTTCT
* * *
28243900 AGAGGTTTTTTACCTCTTTCCATAAGGCCACAAATCCTTGT
66 AGAGATTTTTTACCTATATCCATAAGGCCACAAATCCTTGT
*
28243941 TTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACCAACTGTTT
1 TTGGAA-TT-TTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACCAACTATTT
*
28244005 TTAGA-ATCTTTTTACCTATATCCATAAGGC
64 CTAGAGAT-TTTTTACCTATATCCATAAGGC
28244035 TTGCTAAGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
106 7 0.08
107 71 0.84
108 7 0.08
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.45
Consensus pattern (106 bp):
TTGGAATTTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACCAACTATTTCT
AGAGATTTTTTACCTATATCCATAAGGCCACAAATCCTTGT
Found at i:28246156 original size:107 final size:107
Alignment explanation
Indices: 28245946--28246158 Score: 329
Period size: 107 Copynumber: 2.0 Consensus size: 107
28245936 TTGTGCAGGT
28245946 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * * *
28246011 CACTAACTATTTCTAGAGGTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGCTTTTTACCTATATCAATAAGGCC
*
28246053 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28246118 CACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGC
66 CACCAACTATTTCTAG-AGCTTTTTACCTATATCAATAAGGC
28246159 TTGCTAAGAT
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
107 84 0.88
108 12 0.12
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.44
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGCTTTTTACCTATATCAATAAGGCC
Found at i:28246848 original size:107 final size:108
Alignment explanation
Indices: 28246652--28246852 Score: 334
Period size: 107 Copynumber: 1.9 Consensus size: 108
28246642 TTGTGCAGGT
28246652 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28246717 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28246760 ACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28246824 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28246853 ATATAATAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
106 1 0.01
107 58 0.67
108 28 0.32
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28247560 original size:108 final size:108
Alignment explanation
Indices: 28247363--28247564 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28247353 TTGTGCAGGT
28247363 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28247428 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28247471 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28247536 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28247565 ATATAATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28248272 original size:108 final size:108
Alignment explanation
Indices: 28248075--28248276 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28248065 TTGTGCAGGT
28248075 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28248140 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28248183 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28248248 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28248277 ATATAATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28248996 original size:107 final size:107
Alignment explanation
Indices: 28248785--28248998 Score: 317
Period size: 107 Copynumber: 2.0 Consensus size: 107
28248775 TTGTGCAGGT
28248785 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28248850 CACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAA-GTTTTTTACCTATTTCAATAAGGCC
*
28248893 ACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28248957 CACCAACTGTTTTTAGAA-TCTTTTTACCTATATT-AATAAGGC
66 CACCAACTATTTCTA-AAGT-TTTTTACCTAT-TTCAATAAGGC
28248999 TTGCTAAGAT
Statistics
Matches: 97, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
106 1 0.01
107 64 0.66
108 32 0.33
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAAGTTTTTTACCTATTTCAATAAGGCC
Found at i:28249694 original size:108 final size:108
Alignment explanation
Indices: 28249497--28249698 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28249487 TTGTGCAGGT
28249497 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28249562 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28249605 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28249670 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28249699 ATATCATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28253950 original size:108 final size:108
Alignment explanation
Indices: 28253753--28253954 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28253743 TTGTGCAGGT
28253753 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28253818 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28253861 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28253926 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28253955 ATATAATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28256081 original size:107 final size:108
Alignment explanation
Indices: 28255885--28256085 Score: 334
Period size: 107 Copynumber: 1.9 Consensus size: 108
28255875 TTGTGCAGGT
28255885 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28255950 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28255993 ACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28256057 CACCAACTGTTTTTAGA-ATATTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28256086 ATTAATAAGG
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
106 1 0.01
107 58 0.67
108 28 0.32
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28256790 original size:108 final size:108
Alignment explanation
Indices: 28256593--28256794 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28256583 TTGTGCAGGT
28256593 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28256658 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28256701 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28256766 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28256795 ATATAATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28257515 original size:107 final size:107
Alignment explanation
Indices: 28257305--28257517 Score: 322
Period size: 107 Copynumber: 2.0 Consensus size: 107
28257295 TTGTGCAGGT
28257305 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * * *
28257370 CACTAACTATTTCTAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
*
28257412 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28257477 CACCAACTGTTT-TTAGAATCTTTTTACCTATAT-AATAAGGC
66 CACCAACTATTTCTAAG-AT-TTTTTACCTATATCAATAAGGC
28257518 TTCTAAGATA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
106 3 0.03
107 82 0.85
108 11 0.11
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAGATTTTTTACCTATATCAATAAGGCC
Found at i:28258211 original size:108 final size:107
Alignment explanation
Indices: 28258015--28258228 Score: 331
Period size: 107 Copynumber: 2.0 Consensus size: 107
28258005 TTGTGCAGGT
28258015 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCAATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCAATT
* * * *
28258080 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGA-GCTTTTTACCTATATCCATAAGGCC
*
28258123 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCAATT
* * *
28258187 CACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGC
66 CACCAACTATTTCTAG-AGCTTTTTACCTATATCCATAAGGC
28258229 TTGCTAAGAT
Statistics
Matches: 97, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 55 0.57
108 42 0.43
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.44
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCAATT
CACCAACTATTTCTAGAGCTTTTTACCTATATCCATAAGGCC
Found at i:28258936 original size:108 final size:107
Alignment explanation
Indices: 28258724--28258938 Score: 326
Period size: 108 Copynumber: 2.0 Consensus size: 107
28258714 TTGTGCAGGT
28258724 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28258789 CACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAA-GTTTTTTACCTATTTCAATAAGGCC
*
28258832 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28258897 CACCAACTGTTTTTAGAA-TCTTTTTACCTATATT-AATAAGGC
66 CACCAACTATTTCTA-AAGT-TTTTTACCTAT-TTCAATAAGGC
28258939 TTGCTAAGAT
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
107 1 0.01
108 93 0.95
109 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAAGTTTTTTACCTATTTCAATAAGGCC
Found at i:28259634 original size:108 final size:108
Alignment explanation
Indices: 28259437--28259651 Score: 342
Period size: 108 Copynumber: 2.0 Consensus size: 108
28259427 TTGTGCAGGT
*
28259437 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * *
28259502 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTATATCCATAAGGCC
*
28259545 ACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28259610 CACCAACTGTTTTTAGA-ATCTTTTTACCTATATCCATAAGGC
66 CACCAACTATTTCTAGAGAT-TTTTTACCTATATCCATAAGGC
28259652 TTGCTAAGAT
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 1 0.01
108 97 0.99
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.44
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTATATCCATAAGGCC
Found at i:28259997 original size:713 final size:712
Alignment explanation
Indices: 28231211--28271118 Score: 76978
Period size: 713 Copynumber: 56.3 Consensus size: 712
28231201 CCGAATTGGG
* *
28231211 ACCTC-TTCCATAAGGCCACAAATCC-TGTTTGGAA-TTGTTACTTTCCCTTTG-TGGTTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGG-GTTTTT
*
28231272 TTATAAACAGTAGTCCATTCACCAACTGTTTTTTAGAA--TTTTTACCTATATCAATAAGGCTTT
65 TTATAAACAGTAGTCCATTCACCAACTG-TTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTG
* *
28231335 CTAAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATTATTTATTCTTTT-ATGTAATAC
128 CTAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATAC
28231399 ATATA-TGAAATTACATTTCAA-TTAAAGAATATAAAAATATTCTTTACATGCTTTA-TAGATAC
193 ATATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATAC
28231461 TGGAGCTACAATTAGTTAGTT---GAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAA
258 TGGAGCTACAATTAG-TAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAA
28231523 AAT-CTATAAAAGCAATA-GTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATAT
322 AATCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATAT
*
28231586 TTCAATCTACATAAATAATGTAAGATTTGTAATT-TTAAAATTTTATATTTTCCTGAAATACATG
387 TTCAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATG
28231650 GAGATA-ATTATTAGG-AA-AATTTTATATGTCAATATTTACCA-TTTCTATTAATAAAAAGTCA
452 GAGATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCA
*
28231711 ATTATTTTATCTAT--AAAATTCTTATATAGAAATACCATTAG-T--TAATAATAAA-TTGTGGT
517 ATTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGT-GT
*
28231770 GTAATAAAAC-TTTACGCCAGTAAAATGGTACTTGTGCA-GTACAAATCCTTGTTTGGAATTTAT
581 GTAATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTAT
*
28231833 TGCTTTCCCTTTGTT-GGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTT
646 TGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTT
28231897 TT
711 TT
*
28231899 ACCTCTTTCCATAAGGCCACAAAT-C---TTTGGAA-TTGTTGCTTT-CC-TTGTTTGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28231956 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATC-TTTTACCTAT-TAATAAGGCTTTCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28232019 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28232084 TATTGAAATTACATTTCAATTTAAAG-ATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28232148 AGCTAC-ATTAGTAGTTGCAGAAAGAATAG-CATGT--TGTAGAAAAATGAGAAATTATTAAAAA
261 AGCTACAATTAGTAGTTGCAGAAAGAAT-GCCAT-TCCTGTAGAAAAATGAGAAATTATTAAAAA
*
28232209 TCCTATAAAAGCAATAGGTATAGATGGTAATATAACCATAATTCCATATAAAGATAAAAATATTT
324 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
28232274 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATA-TTTCCTGAAATGCATGGA
389 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
28232338 GATAT-TTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAAT
454 GATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAAT
28232402 TAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
519 TAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
28232467 ATAAAAC-TTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
584 ATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
28232531 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGT-CATTCACTAACTATTTCTAGAGG---TTT
649 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28232591 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28232656 TATAAACAGTAGTCCATTCACCAACTGTTTTTTAGAA---TTTTACCTATATCAATAAGGCTTTC
66 TATAAACAGTAGTCCATTCACCAACTG-TTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGC
*
28232718 TAAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATAATTTATTCTTTTTAATGT-ATAC
129 TAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTC-TTTTAATGTAATAC
28232782 ATATATTGAAATTACATTTCAATTTAAAGAATAT-AAAATATTCTTTACATGCTTTATTAGATAC
193 ATATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATAC
28232846 TGGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAA
258 TGGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAA
*
28232911 ATCTTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATT
323 ATCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATT
*
28232976 TCAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATA-TTTCCTGAAATACATGG
388 TCAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGG
28233040 AGATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
453 AGATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
28233105 TTAGTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAAT-AATTTGTGTGT
518 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
*
28233168 AATAAAACTTTTACGCCAGTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
583 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
28233233 CTTTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
648 CTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28233296 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28233360 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28233425 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28233490 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28233555 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28233620 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28233685 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28233750 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAAT-AAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
*
28233814 AGTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28233879 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28233944 TTCCCTTTGTT-GGTTTTTTTATAAACAGTAGTCAATTCACTAACTATTTCTAGAGG-TTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28234005 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28234069 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
*
28234134 AAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28234199 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28234264 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATT-AAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28234328 CCTATAAAAGCAATAGGTATAGATGGTAAT-AAACCATAATTCCATAT-AAGATAAAAAATATTT
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGAT-AAAAATATTT
28234391 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
389 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
28234456 GATATATTATTAGGAAA-AATTTTATATGTCAATATTTACCA-TTTCTATTAATAAAAAGTCAAT
454 GATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAAT
28234519 TAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
519 TAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
28234584 ATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
584 ATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
28234649 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
649 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28234713 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28234777 TATAAACAGTAGTCCATTCACCAAC--TTTTTAGAATCTTTTTACCTAT-TAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28234839 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28234904 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28234969 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28235034 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28235099 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
*
28235164 TATACTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATT-ATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28235228 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28235293 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28235358 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGG---TTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28235417 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTT-CC-TT-TTGGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
* *
28235478 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATCAATAAGGCTTTCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
*
28235543 AAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28235608 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28235673 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28235738 CTTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28235803 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28235868 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
*
28235933 AGTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
*
28235998 TAAAACTTTTACGCCAGTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28236063 TTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGG-TTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28236123 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28236188 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28236253 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28236317 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28236382 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT-
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28236446 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28236511 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG-
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28236575 -ATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28236639 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28236704 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28236769 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGG-TTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28236829 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28236893 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACC--TAT-ATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28236955 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28237020 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28237085 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28237150 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28237215 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28237280 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28237345 GTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28237409 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28237474 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28237535 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28237600 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28237665 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28237729 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28237794 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28237859 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28237924 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28237989 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28238054 GTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28238118 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28238183 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28238245 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28238308 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATC-TTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28238372 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28238437 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28238502 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28238567 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28238632 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28238697 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28238762 GTTTATCTA-AAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28238826 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28238891 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGG--TTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28238950 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
* *
28239014 TATAAACCGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATCAATAAGGCTT-CT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28239078 AAGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28239142 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28239207 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28239272 -CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCAATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28239336 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28239401 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
*
28239466 AGTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28239531 TAAAACTTTTACGCCA-TAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28239595 TTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28239657 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28239721 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28239786 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28239851 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28239916 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28239981 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28240046 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28240111 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28240176 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28240241 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28240306 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGG---TTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28240365 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
* *
28240430 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATCAATAAGGCTTTCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
*
28240495 AAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28240560 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28240625 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28240690 CTTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
*
28240755 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATACATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28240820 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
*
28240885 AGTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28240950 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28241015 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28241077 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28241142 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28241207 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28241272 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28241337 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28241402 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28241467 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28241532 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28241597 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28241662 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28241727 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28241789 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28241853 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28241918 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28241983 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28242048 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT-
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28242112 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
*
28242177 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATACATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28242242 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28242307 GTTTATC--TAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28242370 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28242435 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28242496 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28242561 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28242626 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28242691 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28242756 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28242821 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28242886 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28242951 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28243016 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28243081 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28243146 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28243209 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28243273 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTT-CTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28243337 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28243401 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28243466 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28243531 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28243596 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28243661 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28243726 GTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
* *
28243790 AAAACTTTTACGCCAAATAAAATGGTACTTGTGCAGGT----ATCTTTG-TTGGAA-TT-TTGCT
586 AAAACTTTTACGCC-ATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28243848 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28243911 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28243975 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28244040 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28244105 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28244170 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28244235 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28244300 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28244365 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28244430 AGTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28244494 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28244559 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28244622 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28244685 T-TAAACAGTAGTCCATTCACCAACTGTTTTTAGAA--TTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28244747 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28244811 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28244876 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28244941 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28245006 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28245071 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28245136 GTTTATC--TAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28245199 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28245264 TCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28245324 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28245389 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28245454 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28245519 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28245584 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28245649 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28245714 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28245779 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28245844 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28245909 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28245974 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGG-TTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28246035 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28246100 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
*
28246165 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATTTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28246229 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28246294 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28246359 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
*
28246424 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAAT-AATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28246488 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28246553 GTTTATC--TAAAAAATTCTTATATAGAAATACCATTAGTTAAT-ATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28246615 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28246680 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28246742 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28246806 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28246871 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28246936 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28247001 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28247066 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28247131 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28247196 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28247261 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28247326 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28247391 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28247453 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28247518 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28247583 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28247648 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28247713 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28247778 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28247843 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28247908 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28247973 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28248038 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28248103 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28248165 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28248230 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTT-CTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28248294 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28248358 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28248423 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28248488 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28248553 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28248618 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
*
28248683 GTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28248748 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
*
28248813 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28248875 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28248939 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28249004 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28249069 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28249134 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28249199 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28249264 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28249329 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28249394 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28249459 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28249524 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28249587 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28249652 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCATAAGGCTT-CTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28249716 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28249781 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28249846 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28249911 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28249976 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28250041 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28250106 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28250171 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28250236 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGG---TTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28250295 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28250359 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAAT-TTTTTACCTATATCAATAAGGCTT-CT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28250422 AAGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28250486 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28250551 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28250616 CTTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28250681 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28250746 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28250811 AGTTTATCTA-AAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28250875 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28250940 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28251002 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28251067 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28251132 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28251197 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28251262 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28251327 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28251392 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28251457 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28251522 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28251587 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28251652 TTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28251714 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28251779 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTT-CT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28251843 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28251908 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28251973 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28252038 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28252103 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28252168 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28252233 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28252298 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28252363 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCT--AGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28252424 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28252489 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28252554 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28252619 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28252684 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28252749 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28252814 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28252879 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28252944 GTTTATCTA-AAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28253008 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28253073 TCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28253133 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28253198 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28253263 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28253328 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28253393 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT-
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28253457 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28253522 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28253587 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28253652 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28253717 AAAACTTTTACGCCA-TAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28253781 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28253843 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28253908 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28253973 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28254037 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28254102 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28254167 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28254232 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCAT-GAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
*
28254296 GATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28254361 GTTTATC--TAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28254424 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28254489 TCCCTTTGTTGGGTTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGG-TTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28254552 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28254617 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAA--TTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28254680 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28254745 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28254810 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28254875 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28254940 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28255005 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28255070 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28255135 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28255200 TTCCCTTTGTTGGG-TTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28255262 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28255327 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28255392 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28255457 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28255522 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28255587 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28255652 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28255717 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28255782 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28255847 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28255912 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28255975 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTT-CCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28256039 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTAT-TAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28256103 AGATAATCAGAAATAATTTATTAGTA-ATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28256167 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28256232 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT-
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28256296 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28256361 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28256426 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28256491 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28256556 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28256621 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28256683 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28256748 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28256813 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28256878 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28256943 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28257008 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28257073 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28257138 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28257203 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28257268 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28257333 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28257394 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28257459 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTT-CTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28257523 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28257588 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28257653 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28257718 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28257783 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28257848 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
28257913 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28257978 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
*
28258043 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCAATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28258105 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28258169 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28258234 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACAT-ATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
*
28258298 TTATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
*
28258363 GAGCTTCAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTA-AAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28258427 CCTATAAAAGCAATAGGTATAAATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
*
28258492 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCTTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
* *
28258557 TTACATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28258622 AGTTTATCTA-AAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28258686 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28258751 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28258814 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28258879 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28258944 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28259009 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28259074 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28259139 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28259204 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28259269 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28259334 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28259399 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28259464 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28259527 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28259592 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28259657 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28259722 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28259787 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28259852 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
*
28259917 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATACATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28259982 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28260047 AGTTTATCTAT-AAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
*
28260111 TAAAACTTTTACGCCAGTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28260176 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28260239 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28260304 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28260369 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28260434 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28260499 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28260564 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28260629 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28260694 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28260759 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28260824 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28260889 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28260952 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28261017 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28261082 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28261147 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28261212 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28261277 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28261342 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28261407 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28261472 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28261537 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28261602 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28261665 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
* *
28261730 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATTCATAAGGCTTTGC
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGC-TTGC
28261795 TAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
129 TAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
28261860 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
194 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
28261925 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
259 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
28261990 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
324 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
28262055 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
389 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
28262120 GATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAAT
454 GATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAAT
*
28262185 TAGTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
519 TAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTA
28262250 ATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
584 ATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGC
28262315 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
649 TTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28262378 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28262443 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28262508 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28262573 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28262638 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28262703 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28262768 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28262833 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28262898 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28262963 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28263028 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28263091 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28263156 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28263221 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28263286 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28263351 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28263416 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
*
28263481 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATACATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28263546 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
*
28263611 GTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28263676 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28263741 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTA-AGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
* **
28263802 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTTTG-TTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28263866 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
28263931 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
131 AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
28263996 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
196 TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
28264061 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
261 AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
28264126 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
326 CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
28264191 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
391 ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
28264256 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
456 TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
*
28264321 GTTTATCTAGAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
521 GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
28264386 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
586 AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
28264451 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
651 TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28264513 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28264578 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28264643 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28264708 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28264773 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28264838 CCTATAAAAGCAATAGGTATAAATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28264903 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28264968 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28265033 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28265098 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28265163 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28265226 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28265291 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28265356 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28265421 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28265486 GAGCTACAATTATAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAA
260 GAGCTACAA-T-TAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAA
28265551 ATCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATT
323 ATCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATT
28265616 TCAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGG
388 TCAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGG
28265681 AGATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
453 AGATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
28265746 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
518 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
28265811 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
583 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
28265876 CTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
648 CTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28265941 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28266006 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
*
28266071 ATGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28266136 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28266201 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28266266 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28266331 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28266396 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28266461 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28266526 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28266591 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
* *
28266654 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCTTTTGTTTGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28266719 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28266784 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28266849 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28266914 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28266979 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28267044 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28267109 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28267174 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28267239 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28267304 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28267367 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCGTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28267432 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28267497 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28267562 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28267627 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28267692 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
*
28267757 AATCTACATAAATAATGTAAGATTTTTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28267822 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28267887 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28267952 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28268017 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28268080 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
* *
28268145 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATCAATAAGGCTTTCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
*
28268210 AAGATAATCAGAAATAATTTATTAGTAAATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28268275 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28268340 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
*
28268405 CTTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
*
28268470 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATACATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28268535 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28268600 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28268665 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
*
28268730 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28268793 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
*
28268858 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCCATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
28268923 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACAT
28268988 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
195 ATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTG
28269053 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
260 GAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAAT
28269118 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
325 CCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTC
28269183 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
390 AATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAG
28269248 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
455 ATATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATT
28269313 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
520 AGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAA
28269378 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
585 TAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCT
28269443 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGG-TTTTT
650 TTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
28269505 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCGC-TTGTTGGGTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCC-CTTTGTTGGGTTTTT
* * *
28269569 TTATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATATTTTTACCTATATCCATAAGGCTTCC
65 TTATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGC
28269634 TAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
129 TAAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
28269699 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
194 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
28269764 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
259 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
28269829 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
324 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
28269894 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
389 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
28269959 GATATATTATTAGGAAACAATTTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
454 GATATATTATTAGGAAACAA-TTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
28270024 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
518 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
28270089 AATAAAACTTTTACGCCATT-AAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
583 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
*
28270153 CTTTCCCTTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAAAGGTTTTT
648 CTTTCCC-TTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTT
28270218 T
712 T
28270219 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28270284 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATTAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATA-TAATAAGGCTTGCT
28270349 AAGATAATCAGAAATAATTTATTTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
130 AAGATAATCAGAAATAATTTA-TTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACA
28270414 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
194 TATATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACT
28270479 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
259 GGAGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAA
28270544 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCA-ATAAAGATAAAAATATTT
324 TCCTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTT
28270608 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
389 CAATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGA
28270673 GATATATTTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
454 GATATA-TTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAA
28270738 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
518 TTAGTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGT
*
28270803 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTATTTGGAATTTATTG
583 AATAAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTG
*
28270868 CTTTCCCTTTGTTGGGTTTTTTTGTAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
648 CTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
*
28270933 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTTCCTTTGTT-GGTTTTTT
1 ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
28270997 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATCAATAAGGCTTGCT
66 TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATAT-AATAAGGCTTGCT
* *
28271062 AAGATAATCAGCAATAATTTATTAGTACATAAAAGCACATAATTTATTCTTTTAATG
130 AAGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATG
28271119 GTGTAAAAGT
Statistics
Matches: 38812, Mismatches: 190, Indels: 412
0.98 0.00 0.01
Matches are distributed among these distances:
681 64 0.00
682 29 0.00
683 90 0.00
684 53 0.00
685 29 0.00
686 126 0.00
687 15 0.00
688 30 0.00
689 51 0.00
691 27 0.00
692 28 0.00
693 1 0.00
694 49 0.00
695 66 0.00
696 28 0.00
697 9 0.00
698 2 0.00
699 17 0.00
700 33 0.00
701 174 0.00
702 360 0.01
703 550 0.01
704 735 0.02
705 2311 0.06
706 1825 0.05
707 1755 0.05
708 2937 0.08
709 3939 0.10
710 5057 0.13
711 3776 0.10
712 6009 0.15
713 6586 0.17
714 1058 0.03
715 993 0.03
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (712 bp):
ACCTCTTTCCATAAGGCCACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTT
TATAAACAGTAGTCCATTCACCAACTGTTTTTAGAATCTTTTTACCTATATAATAAGGCTTGCTA
AGATAATCAGAAATAATTTATTAGTACATAAAAGTACATAATTTATTCTTTTAATGTAATACATA
TATTGAAATTACATTTCAATTTAAAGAATATAAAAATATTCTTTACATGCTTTATTAGATACTGG
AGCTACAATTAGTAGTTGCAGAAAGAATGCCATTCCTGTAGAAAAATGAGAAATTATTAAAAATC
CTATAAAAGCAATAGGTATAGATGGTAATAAAACCATAATTCCATATAAAGATAAAAATATTTCA
ATCTACATAAATAATGTAAGATTTGTAATTCTTAAAATTTTATATTTTCCTGAAATGCATGGAGA
TATATTATTAGGAAACAATTTTATATGTCAATATTTACCATTTTCTATTAATAAAAAGTCAATTA
GTTTATCTATAAAAAATTCTTATATAGAAATACCATTAGTTAATAATAATAAATTTGTGTGTAAT
AAAACTTTTACGCCATTAAAATGGTACTTGTGCAGGTACAAATCCTTGTTTGGAATTTATTGCTT
TCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATTCACTAACTATTTCTAGAGGTTTTTT
Found at i:28260361 original size:108 final size:107
Alignment explanation
Indices: 28260149--28260363 Score: 326
Period size: 108 Copynumber: 2.0 Consensus size: 107
28260139 TTGTGCAGGT
28260149 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28260214 CACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAA-GTTTTTTACCTATTTCAATAAGGCC
*
28260257 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28260322 CACCAACTGTTTTTAGAA-TCTTTTTACCTATATT-AATAAGGC
66 CACCAACTATTTCTA-AAGT-TTTTTACCTAT-TTCAATAAGGC
28260364 TTGCTAAGAT
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
107 1 0.01
108 93 0.95
109 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAAGTTTTTTACCTATTTCAATAAGGCC
Found at i:28261059 original size:108 final size:108
Alignment explanation
Indices: 28260862--28261063 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28260852 TTGTGCAGGT
28260862 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28260927 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28260970 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28261035 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28261064 ATATTAATAA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28261772 original size:108 final size:108
Alignment explanation
Indices: 28261575--28261789 Score: 335
Period size: 108 Copynumber: 2.0 Consensus size: 108
28261565 TTGTGCAGGT
*
28261575 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28261640 CACTAACTATTTCTAGAGGTTTTTTACCTCT-TTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTATATT-CATAAGGCC
*
28261683 ACAAATCCTTGTTTGGAATTTGTTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28261748 CACCAACTGTTTTTAGA-ATATTTTTACCTATATTCATAAGGC
66 CACCAACTATTTCTAGAGAT-TTTTTACCTATATTCATAAGGC
28261790 TTTGCTAAGA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 95 0.97
109 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTACTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTATATTCATAAGGCC
Done.