Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 102 of 211
Found at i:28263198 original size:108 final size:108
Alignment explanation
Indices: 28263001--28263202 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28262991 TTGTGCAGGT
28263001 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28263066 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28263109 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28263174 CACCAACTGTTTTTAGA-ATATTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28263203 ATATAATAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28264620 original size:108 final size:108
Alignment explanation
Indices: 28264423--28264637 Score: 344
Period size: 108 Copynumber: 2.0 Consensus size: 108
28264413 TTGTGCAGGT
28264423 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28264488 CACTAACTATTTCTAGAGGTTTTTTACCTCT-TTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTATATT-CATAAGGCC
*
28264531 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28264596 CACCAACTGTTTTTAGA-ATCTTTTTACCTATATTCATAAGGC
66 CACCAACTATTTCTAGAGAT-TTTTTACCTATATTCATAAGGC
28264638 TTGCTAAGAT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 96 0.97
109 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.45
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTATATTCATAAGGCC
Found at i:28265333 original size:108 final size:108
Alignment explanation
Indices: 28265136--28265337 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28265126 TTGTGCAGGT
28265136 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28265201 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28265244 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28265309 CACCAACTGTTTTTAGA-ATCTTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28265338 ATATTAATAA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28266048 original size:108 final size:108
Alignment explanation
Indices: 28265851--28266052 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28265841 TTGTGCAGGT
28265851 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28265916 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28265959 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28266024 CACCAACTGTTTTTAGA-ATATTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28266053 ATATTAATAA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28266761 original size:108 final size:108
Alignment explanation
Indices: 28266564--28266778 Score: 333
Period size: 108 Copynumber: 2.0 Consensus size: 108
28266554 TTGTGCAGGT
28266564 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * * *
28266629 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTATATCCATAAGGCC
* * *
28266672 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCTTTTGTTTGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28266737 CACCAACTGTTTTTAGA-ATCTTTTTACCTATATCCATAAGGC
66 CACCAACTATTTCTAGAGAT-TTTTTACCTATATCCATAAGGC
28266779 TTGCTAAGAT
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
107 1 0.01
108 96 0.99
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTATATCCATAAGGCC
Found at i:28267489 original size:108 final size:107
Alignment explanation
Indices: 28267277--28267491 Score: 317
Period size: 108 Copynumber: 2.0 Consensus size: 107
28267267 TTGTGCAGGT
28267277 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28267342 CACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAA-GTTTTTTACCTATTTCAATAAGGCC
* *
28267385 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCGTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28267450 CACCAACTGTTTTTAGAA-TCTTTTTACCTATATT-AATAAGGC
66 CACCAACTATTTCTA-AAGT-TTTTTACCTAT-TTCAATAAGGC
28267492 TTGCTAAGAT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
107 1 0.01
108 92 0.95
109 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.45
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAAGTTTTTTACCTATTTCAATAAGGCC
Found at i:28268187 original size:108 final size:108
Alignment explanation
Indices: 28267990--28268191 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
28267980 TTGTGCAGGT
28267990 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28268055 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
*
28268098 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28268163 CACCAACTGTTTTTAGA-ATATTTTTACCT
66 CACCAACTATTTCTAGAGAT-TTTTTACCT
28268192 ATATCAATAA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGATTTTTTACCTCTTTCCATAAGGCC
Found at i:28268900 original size:108 final size:107
Alignment explanation
Indices: 28268703--28268917 Score: 342
Period size: 108 Copynumber: 2.0 Consensus size: 107
28268693 TTGTGCAGGT
28268703 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28268768 CACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAAA-GTTTTTTACCTATATCCATAAGGCC
*
28268811 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28268876 CACCAACTGTTTTTAGAA-TCTTTTTACCTATATCCATAAGGC
66 CACCAACTATTTCTA-AAGT-TTTTTACCTATATCCATAAGGC
28268918 TTGCTAAGAT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 96 0.97
109 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.44
Consensus pattern (107 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAAAGTTTTTTACCTATATCCATAAGGCC
Found at i:28270326 original size:109 final size:108
Alignment explanation
Indices: 28270128--28270330 Score: 327
Period size: 108 Copynumber: 1.9 Consensus size: 108
28270118 TTGTGCAGGT
28270128 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTTGTTGGGTTTTTTTATAAACAGTAGTCCAT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTTGTTGGGTTTTTTTATAAACAGTAGTCCAT
* *
28270193 TCACTAACTATTTCTAAAGGTTTTTTACCTCTTTCCATAAGGCC
66 TCACCAACTATTTCTAAA-GCTTTTTACCTCTTTCCATAAGGCC
*
28270237 ACAAATCCTTGTTTGGAATTTGTTGCTTTCCC-TTTGTTGGGTTTTTTTATAAACAGTAGTCCAT
1 ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTTGTTGGGTTTTTTTATAAACAGTAGTCCAT
* * *
28270301 TCACCAACTGTTTTTAGAATCTTTTTACCT
66 TCACCAACTATTTCTA-AAGCTTTTTACCT
28270331 ATATTAATAA
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
108 54 0.62
109 33 0.38
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (108 bp):
ACAAATCCTTGTTTGGAATTTATTGCTTTCCCTTTTGTTGGGTTTTTTTATAAACAGTAGTCCAT
TCACCAACTATTTCTAAAGCTTTTTACCTCTTTCCATAAGGCC
Found at i:28271039 original size:108 final size:107
Alignment explanation
Indices: 28270843--28271043 Score: 296
Period size: 107 Copynumber: 1.9 Consensus size: 107
28270833 TTGTGCAGGT
*
28270843 ACAAATCCTTATTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTGTAAACAGTAGTCCATT
1 ACAAATCCTTATTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* *
28270908 CACTAACTATTTCTAGAGGTTTTTTACCTCTTTCCATAAGGCC
66 CACCAACTATTTCTAGA-GCTTTTTACCTCTTTCCATAAGGCC
* * *
28270951 ACAAATCCTTGTTTGGAATTTGTTGCTTTTCCTTTGTT-GGTTTTTTTATAAACAGTAGTCCATT
1 ACAAATCCTTATTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
* * *
28271015 CACCAACTGTTTTTAGAATCTTTTTACCT
66 CACCAACTATTTCTAG-AGCTTTTTACCT
28271044 ATATCAATAA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
107 47 0.57
108 36 0.43
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.46
Consensus pattern (107 bp):
ACAAATCCTTATTTGGAATTTATTGCTTTCCCTTTGTTGGGTTTTTTTATAAACAGTAGTCCATT
CACCAACTATTTCTAGAGCTTTTTACCTCTTTCCATAAGGCC
Found at i:28273158 original size:24 final size:24
Alignment explanation
Indices: 28273131--28273179 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
28273121 AATAAGATAC
28273131 ATACTTTTTTATACATATCTTGTA
1 ATACTTTTTTATACATATCTTGTA
28273155 ATACTTTTTTATACATATCTTGTA
1 ATACTTTTTTATACATATCTTGTA
28273179 A
1 A
28273180 CACCCCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (24 bp):
ATACTTTTTTATACATATCTTGTA
Found at i:28277878 original size:42 final size:44
Alignment explanation
Indices: 28277798--28277916 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 44
28277788 CGTTTTCTCT
* * **
28277798 ATGCCATAGTCCAAATATGGTCTTACACA-TATTTACATAT-TG
1 ATGCCATAGCCCAGATATGGTCTTACACAGTATGCACATATCTG
*
28277840 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATATCACACTG
1 ATGCCATAGCCCAGATATGGTCTTACACAGTATGCACATAT----CTG
* *
28277887 ATGCCATATCCCAGATATGGTCTTATACAG
1 ATGCCATAGCCCAGATATGGTCTTACACAG
28277917 AAATCACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 32 0.51
43 2 0.03
47 29 0.46
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (44 bp):
ATGCCATAGCCCAGATATGGTCTTACACAGTATGCACATATCTG
Found at i:28277900 original size:47 final size:47
Alignment explanation
Indices: 28277838--28277940 Score: 136
Period size: 47 Copynumber: 2.2 Consensus size: 47
28277828 ATTTACATAT
* *
28277838 TGATGCCATAGCCCAGCTATGGTCTTACACAG-TAGCACATATCACA
1 TGATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACA
* * *
28277884 CTGATGCCATATCCCAGATATGGTCTTATACAGAAATCACATATCACA
1 -TGATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACA
*
28277932 TGTTGCCAT
1 TGATGCCAT
28277941 GGTCCTGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
47 37 0.76
48 12 0.24
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (47 bp):
TGATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACA
Found at i:28281112 original size:44 final size:43
Alignment explanation
Indices: 28281021--28281216 Score: 216
Period size: 44 Copynumber: 4.6 Consensus size: 43
28281011 TGACAAAAAG
*
28281021 CGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
*
28281064 CGCCGCTAAAGACCATGACCTTTTGGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAGACCATGACC-TTTAGCGGCGCTTTTCCCACAAA
* **
28281108 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTGTCACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTCCCACAAA
* ** * * * ** *
28281152 CGCCGCTATAGATTA-AACCTTTTGCGGCGCTTCTCGTAAAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
* *
28281194 CGCCGCTAAA-AACATAACCTTTA
1 CGCCGCTAAAGACCATGACCTTTA
28281217 AAAAAAATTA
Statistics
Matches: 130, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
41 2 0.02
42 23 0.18
43 43 0.33
44 62 0.48
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:28281134 original size:87 final size:86
Alignment explanation
Indices: 28281014--28281216 Score: 248
Period size: 87 Copynumber: 2.3 Consensus size: 86
28281004 GCATTTGTGA
*
28281014 CAAAAAGCGCCGCTAAAGACCATGACCTTTAGCGACGC-TTTTCCCACAAACGCCGCTAAAGACC
1 CAAAAA-CGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTCCCACAAACGCCGCTAAAGACC
* *
28281078 ATGACCTTTTGGCGGCGCTTTTCC
65 A-AACCTTTT-GCGGCGCTTCTCC
* * ** * **
28281102 CACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTGTCACAAACGCCGCTATAGATTA
1 CAAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTCCCACAAACGCCGCTAAAGACCA
*
28281167 AACCTTTTGCGGCGCTTCTCG
66 AACCTTTTGCGGCGCTTCTCC
* *
28281188 TAAAAACGCCGCTAAA-AACATAACCTTTA
1 CAAAAACGCCGCTAAAGAACATGACCTTTA
28281217 AAAAAAATTA
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
85 12 0.12
86 25 0.25
87 36 0.36
88 27 0.27
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (86 bp):
CAAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTCCCACAAACGCCGCTAAAGACCA
AACCTTTTGCGGCGCTTCTCC
Found at i:28282417 original size:5 final size:5
Alignment explanation
Indices: 28282407--28282433 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
28282397 CTTTCTTGCC
28282407 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
28282434 AATAAGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:28283019 original size:14 final size:14
Alignment explanation
Indices: 28283000--28283026 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
28282990 ATCAAGAAAA
28283000 AAATTATGTATAAT
1 AAATTATGTATAAT
28283014 AAATTATGTATAA
1 AAATTATGTATAA
28283027 GACTTACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AAATTATGTATAAT
Found at i:28285611 original size:27 final size:27
Alignment explanation
Indices: 28285556--28285611 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
28285546 CTAGCTTTAC
***
28285556 AAACCTTAAACTCCATATATATTTTTT
1 AAACCTTAAACTCCATATATATGCATT
28285583 AAACCTTAAACTCCATAT-TAATGCATT
1 AAACCTTAAACTCCATATAT-ATGCATT
28285610 AA
1 AA
28285612 TTGATTGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.38
Consensus pattern (27 bp):
AAACCTTAAACTCCATATATATGCATT
Found at i:28285881 original size:7 final size:7
Alignment explanation
Indices: 28285871--28285905 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
28285861 ATAAAACCTA
28285871 AACCCCT
1 AACCCCT
28285878 AACCCCT
1 AACCCCT
*
28285885 AACCCTT
1 AACCCCT
*
28285892 AACTCCT
1 AACCCCT
28285899 AACCCCT
1 AACCCCT
28285906 CTTTTACAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.51, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCCT
Found at i:28286041 original size:14 final size:14
Alignment explanation
Indices: 28286018--28286055 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
28286008 CACTACCTAT
*
28286018 TAACCTCTAACCT-C
1 TAACCCCTAA-CTAC
28286032 TAACCCCTAACTAC
1 TAACCCCTAACTAC
28286046 TAACCCCTAA
1 TAACCCCTAA
28286056 ACTTTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 2 0.09
14 20 0.91
ACGTcount: A:0.34, C:0.42, G:0.00, T:0.24
Consensus pattern (14 bp):
TAACCCCTAACTAC
Found at i:28286162 original size:14 final size:15
Alignment explanation
Indices: 28286136--28286182 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
28286126 CTATAAATCC
*
28286136 TAAATCTCTAACCCT
1 TAAATCACTAACCCT
* *
28286151 TAACTC-CTAACCCC
1 TAAATCACTAACCCT
28286165 TAAATCAC-AACCCT
1 TAAATCACTAACCCT
28286179 TAAA
1 TAAA
28286183 CCAGAATCCC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 21 0.78
15 6 0.22
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCACTAACCCT
Found at i:28286206 original size:14 final size:15
Alignment explanation
Indices: 28286187--28286219 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
28286177 CTTAAACCAG
28286187 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
28286201 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
28286216 AATC
1 AATC
28286220 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:28287039 original size:16 final size:16
Alignment explanation
Indices: 28287014--28287045 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
28287004 TCCAGTCCAA
28287014 AAAATCACATTTTTGC
1 AAAATCACATTTTTGC
*
28287030 AAAATTACATTTTTGC
1 AAAATCACATTTTTGC
28287046 CCCTAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAATCACATTTTTGC
Found at i:28292113 original size:17 final size:17
Alignment explanation
Indices: 28292081--28292112 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28292071 CAATTGGAGG
28292081 TTTTTGTTTCTCTTTTC
1 TTTTTGTTTCTCTTTTC
28292098 TTTTTGTTT-TCTTTT
1 TTTTTGTTTCTCTTTT
28292113 TGGGCCTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.81
Consensus pattern (17 bp):
TTTTTGTTTCTCTTTTC
Found at i:28292840 original size:147 final size:146
Alignment explanation
Indices: 28292398--28292851 Score: 620
Period size: 147 Copynumber: 3.1 Consensus size: 146
28292388 AGGAAAATTT
*
28292398 TGATTTTTTTTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTAGTCATTTT
1 TGATTTTTTTT-AAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATG-TTTTTAGTCATTTT
* * *
28292463 AAAGGAAAAGTTTAAAATTTT-AAAGCAAAGTTTTGATCTTTTTGAACTATTTCGAAATAAAGGT
64 AAAGGAAAATTTTAAAATTTTAAAAG-AAA-TTTTGATCTTTTTCAACTATTTCGAAATAAAGCT
28292527 TTGATTTTTAAGAAAAATA-
127 TTGATTTTTAAGAAAAATAG
* * * *** *
28292546 -GA----TATTAAAAAAAAAGAGTTCAGATTTTTTTTAA-AAAAATATGTTTTTAGTCCTTTTAA
1 TGATTTTTTTTAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAA
* *
28292605 AGGAAAATTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTTGAAATAAAGCTTTG
66 AGGAAAATTTTAAAATTTTAAAA-GAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTTG
28292670 ATTTTTAAGAAAAATAG
130 ATTTTTAAGAAAAATAG
*
28292687 TGATTTTTTTTTAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAA
1 TGATTTTTTTTAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAA
* *
28292752 AGGAAAATTTTAAATTTTTAAAATGAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTTA
66 AGGAAAATTTTAAAATTTTAAAA-GAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTTG
**
28292817 ATTTTTAAGAAATGTAG
130 ATTTTTAAGAAAAATAG
28292834 TGA-TTTTTTTAAAGAAAA
1 TGATTTTTTTTAAA-AAAA
28292852 CTTTGATTTT
Statistics
Matches: 267, Mismatches: 29, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
140 83 0.31
141 15 0.06
142 24 0.09
143 3 0.01
146 34 0.13
147 108 0.40
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (146 bp):
TGATTTTTTTTAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAA
AGGAAAATTTTAAAATTTTAAAAGAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTTGA
TTTTTAAGAAAAATAG
Found at i:28307838 original size:39 final size:39
Alignment explanation
Indices: 28307784--28307862 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
28307774 TCAAACACTT
28307784 ATCTAGTGTTTTACATTTTGACTTATCATTGGCTTAGCA
1 ATCTAGTGTTTTACATTTTGACTTATCATTGGCTTAGCA
28307823 ATCTAGTGTTTTACATTTTGACTTATCATTGGCTTAGCA
1 ATCTAGTGTTTTACATTTTGACTTATCATTGGCTTAGCA
28307862 A
1 A
28307863 AGACAGAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (39 bp):
ATCTAGTGTTTTACATTTTGACTTATCATTGGCTTAGCA
Found at i:28308981 original size:23 final size:23
Alignment explanation
Indices: 28308955--28309002 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
28308945 AGGACTTAAT
*
28308955 TGCATAAAATGAAATGGTTTTAC
1 TGCATAAAAGGAAATGGTTTTAC
28308978 TGCATAAAAGGAAATGGTTTTAC
1 TGCATAAAAGGAAATGGTTTTAC
28309001 TG
1 TG
28309003 TCTTAGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (23 bp):
TGCATAAAAGGAAATGGTTTTAC
Found at i:28310257 original size:20 final size:20
Alignment explanation
Indices: 28310209--28310260 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
28310199 AAGCTTATGC
*
28310209 TAAGTAAAAGGAATGGAAAG
1 TAAGTAAATGGAATGGAAAG
*
28310229 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGGAATGGAAAG
28310249 TAAGTAAATGGA
1 TAAGTAAATGGA
28310261 GTGATTCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGGAATGGAAAG
Found at i:28314714 original size:33 final size:33
Alignment explanation
Indices: 28314652--28314714 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
28314642 AAAAAATAAC
* * *
28314652 TTTCTTTTTCTCTTTTCTTCTTCTTCTTCTATA
1 TTTCTTTTTCCCTTTTCATCTTCTACTTCTATA
28314685 TTTCTTTTTCCCTTTTCAATCTT-TACTTCT
1 TTTCTTTTTCCCTTTTC-ATCTTCTACTTCT
28314715 TTTCCCTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 22 0.85
34 4 0.15
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (33 bp):
TTTCTTTTTCCCTTTTCATCTTCTACTTCTATA
Found at i:28315819 original size:20 final size:20
Alignment explanation
Indices: 28315796--28315856 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
28315786 CACATTATTG
* *
28315796 GCAGCTTGTTTGCATTACTA
1 GCAGTTTGTCTGCATTACTA
*
28315816 GCAGTTTATCTGC-TATACTA
1 GCAGTTTGTCTGCAT-TACTA
*
28315836 GCAGTTTGTCTGCACTACTA
1 GCAGTTTGTCTGCATTACTA
28315856 G
1 G
28315857 TGGCTTGTCC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (20 bp):
GCAGTTTGTCTGCATTACTA
Found at i:28319958 original size:87 final size:89
Alignment explanation
Indices: 28319850--28320013 Score: 287
Period size: 87 Copynumber: 1.8 Consensus size: 89
28319840 TGTATGAAAG
28319850 TAAGATTATAAATGTAGTAGTGCCTTGTAAAGTGCGTAAATTACATGACTTTGATAA-TTGCTTG
1 TAAGATTAT-AATGTAGTAGTGCCTTGTAAAGTGCGTAAATTACATGACTTTGATAAGTTGCTTG
28319914 TGTTTTGAGAAAGAAGAATGGTTTT
65 TGTTTTGAGAAAGAAGAATGGTTTT
28319939 TAAGATTAT-ATGTAGTAGTGCCTTGTAAAGTGCGTAAATTACATGACTTTGATAAGTGTTGCTT
1 TAAGATTATAATGTAGTAGTGCCTTGTAAAGTGCGTAAATTACATGACTTTGATAA--GTTGCTT
28320003 GTGTTTTGAGA
64 GTGTTTTGAGA
28320014 CTTATCAATG
Statistics
Matches: 72, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
87 46 0.64
89 9 0.12
90 17 0.24
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (89 bp):
TAAGATTATAATGTAGTAGTGCCTTGTAAAGTGCGTAAATTACATGACTTTGATAAGTTGCTTGT
GTTTTGAGAAAGAAGAATGGTTTT
Found at i:28321178 original size:22 final size:22
Alignment explanation
Indices: 28321150--28321225 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
28321140 GTGTATATAT
28321150 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ** ****
28321172 ATGTGATGAATGTGTAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
28321197 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
28321219 ATGTGAT
1 ATGTGAT
28321226 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.11, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:28321209 original size:47 final size:47
Alignment explanation
Indices: 28321131--28321584 Score: 782
Period size: 47 Copynumber: 9.6 Consensus size: 47
28321121 TATTTGAATA
28321131 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
28321180 AATGTGTAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
28321227 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321274 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321321 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321370 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321417 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321464 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
28321511 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
28321558 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
28321585 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 14, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
47 331 0.85
49 58 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:28321454 original size:190 final size:190
Alignment explanation
Indices: 28321131--28321584 Score: 804
Period size: 190 Copynumber: 2.4 Consensus size: 190
28321121 TATTTGAATA
*
28321131 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
28321196 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
28321261 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
28321321 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
28321386 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
28321451 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
28321511 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
28321574 AATGTGATAAG
66 TATGTGATAAG
28321585 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
188 54 0.21
190 200 0.79
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:28332363 original size:43 final size:43
Alignment explanation
Indices: 28332314--28332403 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 43
28332304 AAAATCACCA
* *
28332314 TAAATTGTTGAAATCGAATTAGAGGATGAAAAAAATATGGAAT
1 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
28332357 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
1 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
28332400 TAAA
1 TAAA
28332404 GCTTATTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.51, C:0.02, G:0.20, T:0.27
Consensus pattern (43 bp):
TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
Found at i:28336327 original size:22 final size:22
Alignment explanation
Indices: 28336301--28336347 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
28336291 ACTCTCCCCC
28336301 TCTTCTCTATTTT-TTTCTCTTT
1 TCTTCTCTATTTTGTTT-TCTTT
* *
28336323 TCTTCTTTCTTTTGTTTTCTTT
1 TCTTCTCTATTTTGTTTTCTTT
28336345 TCT
1 TCT
28336348 CCTTCTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (22 bp):
TCTTCTCTATTTTGTTTTCTTT
Found at i:28341039 original size:27 final size:26
Alignment explanation
Indices: 28340895--28341042 Score: 127
Period size: 27 Copynumber: 5.6 Consensus size: 26
28340885 AGACCTCAAA
* *
28340895 ATAGGGTAAAATGA-CGAAATACATCT
1 ATAGGGTAAAATGACCAAAATAC-CCT
* * * *
28340921 ATAAGGTAAAATGATCGATATACCCCT
1 ATAGGGTAAAATGACCAAAATA-CCCT
* * *
28340948 ATAGGATAAATTGACCGAAATACCCT
1 ATAGGGTAAAATGACCAAAATACCCT
* *
28340974 CATAAGGTAAAATAACCAAAATACCCT
1 -ATAGGGTAAAATGACCAAAATACCCT
* *
28341001 ATAGGGTAAAATGACCAAAATATCTT
1 ATAGGGTAAAATGACCAAAATACCCT
*
28341027 CATGGGGTAAAATGAC
1 -ATAGGGTAAAATGAC
28341043 TATTATACCC
Statistics
Matches: 100, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
26 39 0.39
27 60 0.60
28 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (26 bp):
ATAGGGTAAAATGACCAAAATACCCT
Found at i:28341051 original size:53 final size:51
Alignment explanation
Indices: 28340895--28341052 Score: 147
Period size: 53 Copynumber: 3.0 Consensus size: 51
28340885 AGACCTCAAA
*
28340895 ATAGGGTAAAATGA-CGAAATACATCTATAAGGTAAAATGATCGATATACCCCT
1 ATAGGGTAAAATGACCGAAATACATC-ATAAGGTAAAATGA-CCATATA-CCCT
* * * * *
28340948 ATAGGATAAATTGACCGAAATACCCTCATAAGGTAAAATAACCAAAATACCCT
1 ATAGGGTAAAATGACCGAAATA-CATCATAAGGTAAAATGACC-ATATACCCT
* * ** *
28341001 ATAGGGTAAAATGACCAAAATATCTTCATGGGGTAAAATGACTATTATACCC
1 ATAGGGTAAAATGACCGAAATA-CATCATAAGGTAAAATGACCA-TATACCC
28341053 CTAGGAGATG
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
52 1 0.01
53 57 0.67
54 24 0.28
55 3 0.04
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (51 bp):
ATAGGGTAAAATGACCGAAATACATCATAAGGTAAAATGACCATATACCCT
Found at i:28345400 original size:50 final size:50
Alignment explanation
Indices: 28345333--28345473 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 50
28345323 TTTTCTGTAT
* * *
28345333 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGT-TCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TCTCTCATATCGG
* * * * *
28345383 TGCCCATGCCATGTCCCAGGCATGGTCTTATAGGGGATCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATATCGG
* *
28345433 TGCCAACGTCATGTCCCAGACATGGTCTTACATGGGATCTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTC
28345474 ATTCTCTTAA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 1 0.01
50 75 0.99
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATATCGG
Found at i:28352841 original size:27 final size:27
Alignment explanation
Indices: 28352806--28353091 Score: 297
Period size: 27 Copynumber: 10.6 Consensus size: 27
28352796 AACAAAATGA
*
28352806 CTTTGTGGCGAATCATGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
*
28352833 CTTTATGGCGAATCATGAAA-AAAATC
1 CTTTATGGCGAATCATGAAAGAAAAGC
** **
28352859 CTTTATGGAAAATCATGAAAGAAAAAT
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * * *
28352886 ATTTCTGGAGAATCATGAAAGAAAAAC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
28352913 TTTTATGGTGAAT-TTGGAAAGAAAAGC
1 CTTTATGGCGAATCAT-GAAAGAAAAGC
* * *
28352940 CTTTGTGGCAAATCCTGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * * *
28352967 ATTTGTGGCAAATCATAAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
28352994 CTTTGTGGCGAATCATGAAATAAAAGT
1 CTTTATGGCGAATCATGAAAGAAAAGC
*
28353021 CTTTATGGCGAATCATGAAAGATAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
28353048 CTTTGTGGTGAATCATGAAAGAAAGGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
*
28353075 CCTTATGGCGAATCATG
1 CTTTATGGCGAATCATG
28353092 GAGTAAGTTA
Statistics
Matches: 217, Mismatches: 39, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
26 24 0.11
27 192 0.88
28 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTTATGGCGAATCATGAAAGAAAAGC
Found at i:28361390 original size:20 final size:19
Alignment explanation
Indices: 28361361--28361398 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
28361351 AAGTAGTGAT
28361361 AATTTATTTTCTAAGAATA
1 AATTTATTTTCTAAGAATA
*
28361380 AATTATATTTTCTAGGAAT
1 AATT-TATTTTCTAAGAAT
28361399 TACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:28364638 original size:16 final size:17
Alignment explanation
Indices: 28364617--28364649 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
28364607 TTGAGGAAGT
*
28364617 ATAATG-TATTTGGTTA
1 ATAATGTTATTTAGTTA
28364633 ATAATGTTATTTAGTTA
1 ATAATGTTATTTAGTTA
28364650 TGAAATGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (17 bp):
ATAATGTTATTTAGTTA
Found at i:28369358 original size:13 final size:12
Alignment explanation
Indices: 28369340--28369373 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
28369330 TTCTTCACTC
28369340 TTTCTTTTTCTCT
1 TTTCTTTTTCT-T
28369353 TTTCTTTTTCTT
1 TTTCTTTTTCTT
28369365 TTT-TTTTTC
1 TTTCTTTTTC
28369374 AGCATGATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.29
12 4 0.19
13 11 0.52
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTCTTTTTCTT
Found at i:28369361 original size:6 final size:6
Alignment explanation
Indices: 28369340--28369373 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
28369330 TTCTTCACTC
28369340 TTTCTT TTTCTCT TTTCTT TTTCTT TTT-TT TTTC
1 TTTCTT TTTCT-T TTTCTT TTTCTT TTTCTT TTTC
28369374 AGCATGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 5 0.19
6 15 0.58
7 6 0.23
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:28375969 original size:23 final size:20
Alignment explanation
Indices: 28375919--28375972 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 20
28375909 CTCATCGGGA
28375919 AATTGAATA-AGTGTAATTG
1 AATTGAATATAGTGTAATTG
28375938 AATAATGAATATAGGTGTAGAATTG
1 AAT--TGAATATA-GTGT--AATTG
28375963 AATTGAATAT
1 AATTGAATAT
28375973 CGACTTAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.10
21 6 0.21
22 1 0.03
23 11 0.38
25 8 0.28
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.35
Consensus pattern (20 bp):
AATTGAATATAGTGTAATTG
Found at i:28395856 original size:30 final size:30
Alignment explanation
Indices: 28395799--28395857 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
28395789 GTTTTTTAAA
* *
28395799 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
28395829 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
28395858 CAAAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:28401886 original size:23 final size:23
Alignment explanation
Indices: 28401860--28401932 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
28401850 ATAAGTGCCA
28401860 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
28401883 CACTGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
28401906 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
28401929 CACT
1 CACT
28401933 AATCAATAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:28402187 original size:18 final size:17
Alignment explanation
Indices: 28402161--28402199 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
28402151 ATTTTCCTTC
28402161 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
28402178 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
28402196 CACA
1 CACA
28402200 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:28407525 original size:50 final size:51
Alignment explanation
Indices: 28407420--28407611 Score: 208
Period size: 50 Copynumber: 3.7 Consensus size: 51
28407410 GGAATGAGAC
**
28407420 CCCATGTAAGACCATGTTTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
1 CCCATGTAAGACCATGTTTGGGACATGGCATTGGC---ACCGAGG--ATGAGAGGT
*
28407476 CCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGA-GATGAGAGGT
1 CCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGGATGAGAGGT
* * * * **
28407526 CCCCTGTAAGACCATGTTTGGGACATGGAATGGGCACCGATG-TGAGAACT
1 CCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGGATGAGAGGT
* * * *
28407576 CCCATATAAGACCATATCTGGGATATGGCATTGGCA
1 CCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
28407612 GTACAGGAAA
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
50 80 0.67
51 1 0.01
52 1 0.01
53 3 0.03
56 34 0.29
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (51 bp):
CCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGGATGAGAGGT
Found at i:28407887 original size:20 final size:20
Alignment explanation
Indices: 28407862--28407900 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
28407852 TGAGTTATTT
28407862 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
28407882 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
28407901 GAAGAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:28417174 original size:16 final size:17
Alignment explanation
Indices: 28417149--28417180 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
28417139 TAAACCCTAG
28417149 TTTTTCCTTTCTTTCTC
1 TTTTTCCTTTCTTTCTC
28417166 TTTTT-CTTTCTTTCT
1 TTTTTCCTTTCTTTCT
28417181 TTCTCGCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCCTTTCTTTCTC
Found at i:28417306 original size:19 final size:19
Alignment explanation
Indices: 28417262--28417325 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
28417252 TTTTTATTTC
* *
28417262 TTTAATTTATATTATAATAA
1 TTTAATTTAT-TAATAATCA
*
28417282 TATAATTTATTAATAATCA
1 TTTAATTTATTAATAATCA
* * *
28417301 TTTAATTAATAAAT-ATCT
1 TTTAATTTATTAATAATCA
28417319 TTTAATT
1 TTTAATT
28417326 ATAACACAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
18 10 0.27
19 18 0.49
20 9 0.24
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAATTTATTAATAATCA
Found at i:28417588 original size:25 final size:23
Alignment explanation
Indices: 28417544--28417604 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
28417534 ATTTTGATTT
*
28417544 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
28417568 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
28417592 ATATAAATTATAT
1 AT-TTAATTATAT
28417605 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:28417607 original size:35 final size:35
Alignment explanation
Indices: 28417552--28417631 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
28417542 TTATTTAATA
* *
28417552 ATATAATAT-CATTATAATTTAATTATCATAAATT
1 ATATAATATAAATTATAATTTAAATATCATAAATT
*
28417586 CATATAATATAAATTAT-ATTTAAATATCATTAATT
1 -ATATAATATAAATTATAATTTAAATATCATAAATT
28417621 ATATAAT-TAAA
1 ATATAATATAAA
28417632 ACAAATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 25 0.61
36 5 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (35 bp):
ATATAATATAAATTATAATTTAAATATCATAAATT
Found at i:28418070 original size:16 final size:16
Alignment explanation
Indices: 28418049--28418079 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
28418039 TAAGTAAGCA
28418049 AGTAAGTAAACAAGAG
1 AGTAAGTAAACAAGAG
*
28418065 AGTAAGTAAAGAAGA
1 AGTAAGTAAACAAGA
28418080 AACAAAGACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (16 bp):
AGTAAGTAAACAAGAG
Found at i:28421238 original size:14 final size:12
Alignment explanation
Indices: 28421209--28421235 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28421199 TTGTACGAAG
28421209 ATAATGCAACAT
1 ATAATGCAACAT
28421221 ATAATGCAACAT
1 ATAATGCAACAT
28421233 ATA
1 ATA
28421236 TAACTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (12 bp):
ATAATGCAACAT
Found at i:28439573 original size:45 final size:45
Alignment explanation
Indices: 28439506--28439811 Score: 228
Period size: 45 Copynumber: 6.8 Consensus size: 45
28439496 TTGGCTTGTA
*
28439506 AAATGAATAAGACCATAGTTGAAAGACAATATGGCACTATACCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
* * * *
28439551 AAATGAATAAGACAATATTTGAAAGACACTATGGCGCTATACCGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
*
28439596 AAATGAATAAGACCATAGTT-CAAGAACACTATGGCAAC-ATGA-CGG
1 AAATGAATAAGACCATAGTTGAAAG-ACACTATGGC-ACTAT-ACCGG
* * ** **
28439641 AAATGAATAAGACCACAGTTGAAAGACACTATGACA-TCATGTCAA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACCGG
* * * * ** **
28439686 AAATAAAAAAAACCATAGTTAAAAGACACTATGGCA-TCATGTCAC
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACCGG
** * * * ** **
28439731 AAAAAAATAAAACCATAGTTGAAGGACAATATGGCA-TCATGTCAC
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACCGG
** *
28439776 AAAAAAATAAAACCATAGTTGAAAGACACTATGGCA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCA
28439812 TCATATCGAA
Statistics
Matches: 224, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
44 4 0.02
45 215 0.96
46 5 0.02
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
Found at i:28439689 original size:90 final size:90
Alignment explanation
Indices: 28439505--28439811 Score: 309
Period size: 90 Copynumber: 3.4 Consensus size: 90
28439495 ATTGGCTTGT
* * * *
28439505 AAAATGAATAAGACCATAGTTGAAAGACAATATGGC-ACTAT-ACCGGAAATGAATAAGACAATA
1 AAAATAAATAAAACCATAGTTGAAAGACACTATGGCAAC-ATGA-CGGAAATGAATAAGACCATA
* * ** *
28439568 TTTGAAAGACACTATGGC-GCTATACCG
64 GTTGAAAGACACTATGGCATC-ATGTCA
* * * *
28439595 AAAATGAATAAGACCATAGTT-CAAGAACACTATGGCAACATGACGGAAATGAATAAGACCACAG
1 AAAATAAATAAAACCATAGTTGAAAG-ACACTATGGCAACATGACGGAAATGAATAAGACCATAG
*
28439659 TTGAAAGACACTATGACATCATGTCA
65 TTGAAAGACACTATGGCATCATGTCA
* * * * ** ** *
28439685 AAAATAAAAAAAACCATAGTTAAAAGACACTATGGCATCATGTCACAAAAAAATAAAACCATAGT
1 AAAATAAATAAAACCATAGTTGAAAGACACTATGGCAACATGACGGAAATGAATAAGACCATAGT
* *
28439750 TGAAGGACAATATGGCATCATGTCA
66 TGAAAGACACTATGGCATCATGTCA
28439775 CAAAA-AAATAAAACCATAGTTGAAAGACACTATGGCA
1 -AAAATAAATAAAACCATAGTTGAAAGACACTATGGCA
28439812 TCATATCGAA
Statistics
Matches: 184, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
89 3 0.02
90 170 0.92
91 11 0.06
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (90 bp):
AAAATAAATAAAACCATAGTTGAAAGACACTATGGCAACATGACGGAAATGAATAAGACCATAGT
TGAAAGACACTATGGCATCATGTCA
Found at i:28439812 original size:45 final size:45
Alignment explanation
Indices: 28439601--28439815 Score: 263
Period size: 45 Copynumber: 4.8 Consensus size: 45
28439591 ACCGAAAATG
* * * * ** **
28439601 AATAAGACCATAGTT-CAAGAACACTATGGCAACATGACGGAAATG
1 AATAAAACCATAGTTGAAAG-ACACTATGGCATCATGTCACAAAAA
* * *
28439646 AATAAGACCACAGTTGAAAGACACTATGACATCATGTCA-AAAATA
1 AATAAAACCATAGTTGAAAGACACTATGGCATCATGTCACAAAA-A
* *
28439691 AAAAAAACCATAGTTAAAAGACACTATGGCATCATGTCACAAAAA
1 AATAAAACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
* *
28439736 AATAAAACCATAGTTGAAGGACAATATGGCATCATGTCACAAAAA
1 AATAAAACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
28439781 AATAAAACCATAGTTGAAAGACACTATGGCATCAT
1 AATAAAACCATAGTTGAAAGACACTATGGCATCAT
28439816 ATCGAAAGTG
Statistics
Matches: 148, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
44 3 0.02
45 138 0.93
46 7 0.05
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (45 bp):
AATAAAACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
Found at i:28440285 original size:73 final size:74
Alignment explanation
Indices: 28440197--28440338 Score: 205
Period size: 73 Copynumber: 1.9 Consensus size: 74
28440187 GTGTTTATAC
* * * * *
28440197 GAAATGTTTATATGAATAGTTATTGAATGAATGGTATATCTAATATGTTTACTTGCATATGTTTT
1 GAAATGTTTATATGAATAGATATTGAATAAAGGGAATATCTAATATATTTACTTGCATATGTTTT
28440262 ATAACATGT
66 ATAACATGT
* * *
28440271 GAAATG-TTATATGAATAGATGTTGAATAAAGGGAATATCTAATGTATTTACTTGTATATGTTTT
1 GAAATGTTTATATGAATAGATATTGAATAAAGGGAATATCTAATATATTTACTTGCATATGTTTT
28440335 ATAA
66 ATAA
28440339 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 54 0.90
74 6 0.10
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.43
Consensus pattern (74 bp):
GAAATGTTTATATGAATAGATATTGAATAAAGGGAATATCTAATATATTTACTTGCATATGTTTT
ATAACATGT
Found at i:28442459 original size:59 final size:62
Alignment explanation
Indices: 28442382--28442497 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
28442372 ATTACTTTAA
* * *
28442382 TATTAAATTAATATAATATTTATC-A-A-GATAAATATTAGATTAAATTTAATATTAGATCT
1 TATTAAATTAATAGAATATTTATCTACATGATAAACATTAAATTAAATTTAATATTAGATCT
*
28442441 TATTGAATTAATAGAATATTTATCTACATGATAAACATTAAATTAAATTTAATATTA
1 TATTAAATTAATAGAATATTTATCTACATGATAAACATTAAATTAAATTTAATATTA
28442498 AATACAATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
61 1 0.02
62 26 0.52
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.43
Consensus pattern (62 bp):
TATTAAATTAATAGAATATTTATCTACATGATAAACATTAAATTAAATTTAATATTAGATCT
Found at i:28444154 original size:11 final size:11
Alignment explanation
Indices: 28444138--28444165 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
28444128 TTCATAACAA
28444138 TAGGTGAAGTC
1 TAGGTGAAGTC
28444149 TAGGTGAAGTC
1 TAGGTGAAGTC
28444160 TAGGTG
1 TAGGTG
28444166 GATTCTTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.39, T:0.29
Consensus pattern (11 bp):
TAGGTGAAGTC
Found at i:28446848 original size:25 final size:25
Alignment explanation
Indices: 28446831--28446880 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
28446821 AAGCTCTTTC
28446831 TAGCCATATAACGGGAAGCTCATAA
1 TAGCCATATAACGGGAAGCTCATAA
*
28446856 TAGCCATGTAACGGGAAGCTCATAA
1 TAGCCATATAACGGGAAGCTCATAA
28446881 GATCTATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (25 bp):
TAGCCATATAACGGGAAGCTCATAA
Found at i:28446958 original size:25 final size:25
Alignment explanation
Indices: 28446832--28446973 Score: 82
Period size: 25 Copynumber: 5.8 Consensus size: 25
28446822 AGCTCTTTCT
*
28446832 AGCCATATAA-CGGGAAGCTCATAAT
1 AGCCAT-TAATCGGGAAGCTCATAAG
28446857 AGCCATGTAA-CGGGAAGCTCATAAG
1 AGCCAT-TAATCGGGAAGCTCATAAG
* * *
28446882 ATCTA-TAATCGGGAAG-TCCA-AGCG
1 AGCCATTAATCGGGAAGCT-CATA-AG
* * * **
28446906 AGCCAAT-ATCAGAAAGCTCCGAAG
1 AGCCATTAATCGGGAAGCTCATAAG
* *
28446930 AGCCATTAATCGGAAAGCTCATAAT
1 AGCCATTAATCGGGAAGCTCATAAG
* *
28446955 AGCCA-TAAGCAGGAAGCTC
1 AGCCATTAATCGGGAAGCTC
28446974 GCAAGAACCA
Statistics
Matches: 91, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 5 0.05
24 39 0.43
25 47 0.52
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (25 bp):
AGCCATTAATCGGGAAGCTCATAAG
Found at i:28458336 original size:18 final size:18
Alignment explanation
Indices: 28458309--28458345 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
28458299 TGAATTTTCG
*
28458309 AATTCAAATAACTCGAAT
1 AATTCAAATAAATCGAAT
*
28458327 AATTCCAATAAATCGAAT
1 AATTCAAATAAATCGAAT
28458345 A
1 A
28458346 TAAACTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (18 bp):
AATTCAAATAAATCGAAT
Found at i:28459128 original size:5 final size:5
Alignment explanation
Indices: 28459118--28459185 Score: 68
Period size: 5 Copynumber: 13.4 Consensus size: 5
28459108 GAAAAAATAT
* * *
28459118 ATTCG ATTCG ATTCG ATTCA ATTCG ATTCG ATTCG ATTTG AATTCC ATCTC-
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG
28459169 ACTT-G ATTCG ATTCG AT
1 A-TTCG ATTCG ATTCG AT
28459186 AAAACTCCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
4 2 0.04
5 45 0.85
6 6 0.11
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:28466320 original size:40 final size:40
Alignment explanation
Indices: 28466105--28466325 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 40
28466095 TCTTTTCAAG
* * *
28466105 AGATTCAGTTGGTATGGCTTGAGAGCGCATACGTTTCAGT
1 AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
* * * *
28466145 AGATACAGTAGGTATGGCTTGAAAGTGCATATGTTTCAGT
1 AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
* * * * *
28466185 AGATTTAGTAGGTATGGCTTGGAAGTGCATACGTTTCAAT
1 AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
* *** * * *
28466225 AGATTCAATAGGTATCATTCGAAATCCCATACGTTTCTGT
1 AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
* * * *
28466265 AGATTGAATAGGTATTGCTCGAAAGCGCATACATTTCAGT
1 AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
* *
28466305 AGATTCAGTAAGTATTGCTCG
1 AGATTCAGTAGGTATGGCTCG
28466326 TCTGAGCACC
Statistics
Matches: 148, Mismatches: 33, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (40 bp):
AGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAGT
Found at i:28468865 original size:19 final size:19
Alignment explanation
Indices: 28468820--28468866 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
28468810 TCTTAATTTT
*
28468820 TTAAATAATTTTTATAAGA
1 TTAAAAAATTTTTATAAGA
**
28468839 TTTTAAAATTTTTAATAAG-
1 TTAAAAAATTTTT-ATAAGA
28468858 TTAAAAAAT
1 TTAAAAAAT
28468867 AGTATTTAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
TTAAAAAATTTTTATAAGA
Found at i:28469002 original size:33 final size:33
Alignment explanation
Indices: 28468965--28469028 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
28468955 AGAATTGAAA
*
28468965 TTTTATTTCTCAAT-TTTTTAAATTTTTTAAATT
1 TTTTATTT-TCAATGTTTTTAAAATTTTTAAATT
**
28468998 TTTTATTTTTTATGTTTTTAAAATTTTTAAA
1 TTTTATTTTCAATGTTTTTAAAATTTTTAAA
28469029 AAGTATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 3 0.11
33 24 0.89
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (33 bp):
TTTTATTTTCAATGTTTTTAAAATTTTTAAATT
Found at i:28469015 original size:25 final size:25
Alignment explanation
Indices: 28468977--28469025 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
28468967 TTATTTCTCA
*
28468977 ATTTTTTAAATTTTTTAAATTTTTT
1 ATTTTTTAAATTTTTAAAATTTTTT
**
28469002 ATTTTTTATGTTTTTAAAATTTTT
1 ATTTTTTAAATTTTTAAAATTTTT
28469026 AAAAAGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (25 bp):
ATTTTTTAAATTTTTAAAATTTTTT
Found at i:28469016 original size:16 final size:16
Alignment explanation
Indices: 28468976--28469009 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
28468966 TTTATTTCTC
28468976 AATTTTTTAAATTTTTTA
1 AATTTTTT--ATTTTTTA
28468994 AATTTTTTATTTTTTA
1 AATTTTTTATTTTTTA
28469010 TGTTTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
AATTTTTTATTTTTTA
Found at i:28469029 original size:9 final size:9
Alignment explanation
Indices: 28468976--28469028 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
28468966 TTTATTTCTC
28468976 AATTTTTTA
1 AATTTTTTA
28468985 AATTTTTTA
1 AATTTTTTA
28468994 AATTTTTT-
1 AATTTTTTA
28469002 -ATTTTTT-
1 AATTTTTTA
28469009 -ATGTTTTTA
1 AAT-TTTTTA
*
28469018 AAATTTTTA
1 AATTTTTTA
28469027 AA
1 AA
28469029 AAGTATATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
7 9 0.22
8 5 0.12
9 25 0.62
10 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
AATTTTTTA
Found at i:28470802 original size:9 final size:9
Alignment explanation
Indices: 28470790--28470839 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
28470780 AATTAGAAAA
28470790 AAAAATTAT
1 AAAAATTAT
28470799 AAAAAAATTA-
1 --AAAAATTAT
28470809 AAAAATTA-
1 AAAAATTAT
28470817 AAACAATTAT
1 AAA-AATTAT
*
28470827 AAATATTAT
1 AAAAATTAT
28470836 AAAA
1 AAAA
28470840 TTTAAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 11 0.31
9 13 0.37
10 3 0.09
11 8 0.23
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:28470818 original size:17 final size:17
Alignment explanation
Indices: 28470798--28470846 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
28470788 AAAAAAATTA
28470798 TAAAAAAATTAAAAAAT
1 TAAAAAAATTAAAAAAT
* *
28470815 TAAAACAATTATAAATAT
1 TAAAAAAATTA-AAAAAT
* *
28470833 TATAAAATTTAAAA
1 TAAAAAAATTAAAA
28470847 TATCTAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAAAATTAAAAAAT
Found at i:28475701 original size:17 final size:17
Alignment explanation
Indices: 28475681--28475788 Score: 90
Period size: 17 Copynumber: 6.4 Consensus size: 17
28475671 AAATATCTTC
*
28475681 TCATATAAAATAACAGT
1 TCATACAAAATAACAGT
* * **
28475698 TCATACCAAATGACAAC
1 TCATACAAAATAACAGT
* *
28475715 TCATGCAAAATAATAGT
1 TCATACAAAATAACAGT
* *
28475732 TCATACGAAATATCAGT
1 TCATACAAAATAACAGT
** * *
28475749 TCATACCGAATAATAAT
1 TCATACAAAATAACAGT
*
28475766 TCATGCAAAATAACAGT
1 TCATACAAAATAACAGT
28475783 TCATAC
1 TCATAC
28475789 TTCATCATAA
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 65 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (17 bp):
TCATACAAAATAACAGT
Found at i:28475708 original size:34 final size:34
Alignment explanation
Indices: 28475670--28475746 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 34
28475660 CAATTCGCAT
** *
28475670 CAAATATCTTCTCATATAAAATAACAGTTCATAC
1 CAAATATCAACTCATACAAAATAACAGTTCATAC
* *
28475704 CAAATGA-CAACTCATGCAAAATAATAGTTCATAC
1 CAAAT-ATCAACTCATACAAAATAACAGTTCATAC
*
28475738 GAAATATCA
1 CAAATATCA
28475747 GTTCATACCG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
33 1 0.03
34 33 0.94
35 1 0.03
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.27
Consensus pattern (34 bp):
CAAATATCAACTCATACAAAATAACAGTTCATAC
Found at i:28475736 original size:51 final size:51
Alignment explanation
Indices: 28475681--28475788 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
28475671 AAATATCTTC
* * *
28475681 TCATATAAAATAACAGTTCATACCAAATGACAACTCATGCAAAATAATAGT
1 TCATACAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
* * * * *
28475732 TCATACGAAATATCAGTTCATACCGAATAATAATTCATGCAAAATAACAGT
1 TCATACAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
28475783 TCATAC
1 TCATAC
28475789 TTCATCATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (51 bp):
TCATACAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
Found at i:28477055 original size:36 final size:34
Alignment explanation
Indices: 28476980--28477068 Score: 107
Period size: 34 Copynumber: 2.8 Consensus size: 34
28476970 ACGCGTATAT
*
28476980 ATATATTCTATATATATAACAAAACCATAAACGC
1 ATATATTCTATATATATAACAAAACCATAAACAC
* *
28477014 ATATATTTTATATATATAACAAAATC-T--ACAC
1 ATATATTCTATATATATAACAAAACCATAAACAC
*
28477045 ACATA--CTATATATATAACAAAACC
1 ATATATTCTATATATATAACAAAACC
28477069 CACGCGTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 17 0.35
31 7 0.14
33 1 0.02
34 24 0.49
ACGTcount: A:0.51, C:0.17, G:0.01, T:0.31
Consensus pattern (34 bp):
ATATATTCTATATATATAACAAAACCATAAACAC
Found at i:28485655 original size:3 final size:3
Alignment explanation
Indices: 28485647--28485672 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
28485637 ACCAGAACGA
28485647 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
28485673 CCAAAAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:28487630 original size:45 final size:45
Alignment explanation
Indices: 28487566--28487817 Score: 259
Period size: 45 Copynumber: 5.8 Consensus size: 45
28487556 ATAAGGTATT
* *
28487566 TATAATAATTGTCGGTTTCACCAACCAGTGCTAGGCACACATATA
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
** * * *
28487611 TATAATATTTGTCAATTTCATCGACCAGTGTTGGGCACACATATA
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
* * * *
28487656 TATAATA----T---TTTCACCGACTAGTGTTAGACACAAATATA
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
* **
28487694 -ATAATAATTGTCGGTTTCACCGACCAGTGCTAGATACACATATA
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
* * * * *
28487738 TATAATATTTGTTGGTTTCACTGAGCAGTGCTGGGCACGCATATA
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
* *
28487783 TATAATATTTTTCGGTTTCACCGACCAGTTCTAGG
1 TATAATATTTGTCGGTTTCACCGACCAGTGCTAGG
28487818 GCGTAAAACT
Statistics
Matches: 169, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
37 6 0.04
38 25 0.15
41 2 0.01
44 26 0.15
45 110 0.65
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (45 bp):
TATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACATATA
Found at i:28487668 original size:38 final size:37
Alignment explanation
Indices: 28487626--28487699 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 37
28487616 TATTTGTCAA
* * * *
28487626 TTTCATCGACCAGTGTTGGGCACACATATATATAATAT
1 TTTCACCGACCAGTGTTAGACACAAATATA-ATAATAT
*
28487664 TTTCACCGACTAGTGTTAGACACAAATATAATAATA
1 TTTCACCGACCAGTGTTAGACACAAATATAATAATA
28487700 ATTGTCGGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 6 0.19
38 25 0.81
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (37 bp):
TTTCACCGACCAGTGTTAGACACAAATATAATAATAT
Found at i:28487712 original size:82 final size:83
Alignment explanation
Indices: 28487581--28487747 Score: 210
Period size: 82 Copynumber: 2.0 Consensus size: 83
28487571 TAATTGTCGG
* * * * * * *
28487581 TTTCACCAACCAGTGCTAGGCACACATATATATAATATTTGTCAATTTCATCGACCAGTGTTGGG
1 TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAATTTCACCGACCAGTGCTAGA
28487646 CACACATATATATAATAT
66 CACACATATATATAATAT
* * * **
28487664 TTTCACCGACTAGTGTTAGACACAAATATA-ATAATAATTGTCGGTTTCACCGACCAGTGCTAGA
1 TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAATTTCACCGACCAGTGCTAGA
*
28487728 TACACATATATATAATAT
66 CACACATATATATAATAT
28487746 TT
1 TT
28487748 GTTGGTTTCA
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
82 46 0.65
83 25 0.35
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (83 bp):
TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAATTTCACCGACCAGTGCTAGA
CACACATATATATAATAT
Found at i:28496212 original size:19 final size:18
Alignment explanation
Indices: 28496164--28496212 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
28496154 ATTTTTACTA
* *
28496164 TTTTTTTCTCTCTTTTTC
1 TTTTTTTCACTCGTTTTC
* *
28496182 TTTTTGTGACTCGTTTTC
1 TTTTTTTCACTCGTTTTC
28496200 TTTTTTCTCACTC
1 TTTTTT-TCACTC
28496213 TTTCTTTCCT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.04, C:0.22, G:0.06, T:0.67
Consensus pattern (18 bp):
TTTTTTTCACTCGTTTTC
Found at i:28496772 original size:15 final size:15
Alignment explanation
Indices: 28496752--28496781 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
28496742 GGTTGAGGCT
28496752 TCGCTTGATTACTAA
1 TCGCTTGATTACTAA
28496767 TCGCTTGATTACTAA
1 TCGCTTGATTACTAA
28496782 CACCTCGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (15 bp):
TCGCTTGATTACTAA
Found at i:28499694 original size:51 final size:51
Alignment explanation
Indices: 28499610--28499714 Score: 149
Period size: 51 Copynumber: 2.1 Consensus size: 51
28499600 ATCTGACTTA
* * * *
28499610 AAACTTGCATTGATGTTGTCCGAATTAAGACACACTTAATGAACATAAATC
1 AAACATGCATTGATGCTGTCCAAATTAAGACACACTTAATAAACATAAATC
*
28499661 AAACATGCATTGATGCTGTCCAAATT-AGAACACACTTAATAAACATGAATC
1 AAACATGCATTGATGCTGTCCAAATTAAG-ACACACTTAATAAACATAAATC
28499712 AAA
1 AAA
28499715 GTAAATACCA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (51 bp):
AAACATGCATTGATGCTGTCCAAATTAAGACACACTTAATAAACATAAATC
Found at i:28504757 original size:14 final size:14
Alignment explanation
Indices: 28504738--28504767 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
28504728 TATTTGGTTG
28504738 AATTTTTAAAAAAT
1 AATTTTTAAAAAAT
*
28504752 AATTTTTGAAAAAT
1 AATTTTTAAAAAAT
28504766 AA
1 AA
28504768 AAATGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
AATTTTTAAAAAAT
Found at i:28505384 original size:20 final size:20
Alignment explanation
Indices: 28505359--28505420 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 20
28505349 TTTTTCATTT
28505359 TTTTTAAATGAAAATGAAAA
1 TTTTTAAATGAAAATGAAAA
28505379 TTTTTAAAATGAAAATGAAAA
1 TTTTT-AAATGAAAATGAAAA
**
28505400 TTATTT-TTTGAAAATGAAAA
1 TT-TTTAAATGAAAATGAAAA
28505420 T
1 T
28505421 GGAAAATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.47
21 17 0.45
22 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (20 bp):
TTTTTAAATGAAAATGAAAA
Found at i:28505388 original size:21 final size:21
Alignment explanation
Indices: 28505358--28505401 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
28505348 GTTTTTCATT
*
28505358 TTTTTTAAATGAAAATGAAAA
1 TTTTTAAAATGAAAATGAAAA
28505379 TTTTTAAAATGAAAATGAAAA
1 TTTTTAAAATGAAAATGAAAA
28505400 TT
1 TT
28505402 ATTTTTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (21 bp):
TTTTTAAAATGAAAATGAAAA
Found at i:28505395 original size:27 final size:26
Alignment explanation
Indices: 28505364--28505428 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 26
28505354 CATTTTTTTT
28505364 AAATGAAAATGAAAATTTTT-AAAATGA
1 AAATGAAAAT--AAATTTTTGAAAATGA
* *
28505391 AAATGAAAATTATTTTTTGAAAATGA
1 AAATGAAAATAAATTTTTGAAAATGA
28505417 AAATGGAAAATA
1 AAAT-GAAAATA
28505429 TTACTAGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 6 0.18
26 11 0.33
27 16 0.48
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATGAAAATAAATTTTTGAAAATGA
Found at i:28505440 original size:26 final size:26
Alignment explanation
Indices: 28505364--28505440 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 26
28505354 CATTTTTTTT
28505364 AAATGAAAATGAAAATT-TT--T--A
1 AAATGAAAATGAAAATTATTACTAGA
** *
28505385 AAATGAAAATGAAAATTATTTTTTGA
1 AAATGAAAATGAAAATTATTACTAGA
*
28505411 AAATGAAAATGGAAAA-TATTACTAGC
1 AAATGAAAAT-GAAAATTATTACTAGA
28505437 AAAT
1 AAAT
28505441 ATTTTATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 17 0.37
22 2 0.04
24 1 0.02
26 21 0.46
27 5 0.11
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATGAAAATGAAAATTATTACTAGA
Found at i:28505721 original size:14 final size:14
Alignment explanation
Indices: 28505684--28505725 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
28505674 AAGCCTCATT
28505684 TATTTTTATATAA-A
1 TATTTTTATA-AATA
*
28505698 -ATTTTCATAAATA
1 TATTTTTATAAATA
28505711 TATTTTTATAAATA
1 TATTTTTATAAATA
28505725 T
1 T
28505726 TTGTACTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 2 0.08
13 9 0.38
14 13 0.54
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTTTTATAAATA
Found at i:28509562 original size:8 final size:8
Alignment explanation
Indices: 28509549--28509612 Score: 65
Period size: 8 Copynumber: 7.8 Consensus size: 8
28509539 ACCACATTTT
28509549 AATAAACA
1 AATAAACA
*
28509557 AATAAATGA
1 AATAAA-CA
* *
28509566 AATGGAATA
1 AAT-AAACA
*
28509575 ATTAAACA
1 AATAAACA
28509583 AATAAACA
1 AATAAACA
*
28509591 AACAAACA
1 AATAAACA
28509599 AATAAACA
1 AATAAACA
28509607 AATAAA
1 AATAAA
28509613 TCGACCCCAC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
8 36 0.80
9 7 0.16
10 2 0.04
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (8 bp):
AATAAACA
Found at i:28509613 original size:12 final size:12
Alignment explanation
Indices: 28509549--28509613 Score: 67
Period size: 12 Copynumber: 5.2 Consensus size: 12
28509539 ACCACATTTT
28509549 AATAAACAAATA
1 AATAAACAAATA
**
28509561 AATGAAATGGAATA
1 AAT-AAA-CAAATA
*
28509575 ATTAAACAAATA
1 AATAAACAAATA
* *
28509587 AACAAACAAACA
1 AATAAACAAATA
28509599 AATAAACAAATA
1 AATAAACAAATA
28509611 AAT
1 AAT
28509614 CGACCCCACC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
12 29 0.71
13 6 0.15
14 6 0.15
ACGTcount: A:0.69, C:0.09, G:0.05, T:0.17
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:28511061 original size:21 final size:19
Alignment explanation
Indices: 28511013--28511067 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
28511003 TACAAAAATC
* *
28511013 TTTTTTGTTCTCTTCTCTG
1 TTTTTTCTTCTGTTCTCTG
28511032 TTGTTTTCTTCTGTTCTCTTG
1 TT-TTTTCTTCTGTTCTC-TG
*
28511053 TCTTTTTCTTTTGTT
1 T-TTTTTCTTCTGTT
28511068 GTTTTCTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.43
21 14 0.47
22 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.11, T:0.71
Consensus pattern (19 bp):
TTTTTTCTTCTGTTCTCTG
Found at i:28512375 original size:10 final size:11
Alignment explanation
Indices: 28512353--28512381 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
28512343 TGACAACAAC
28512353 AAAATAGTAAA
1 AAAATAGTAAA
28512364 AAAATAGT-AA
1 AAAATAGTAAA
28512374 AAAATAGT
1 AAAATAGT
28512382 TTTTTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (11 bp):
AAAATAGTAAA
Found at i:28524137 original size:27 final size:27
Alignment explanation
Indices: 28524098--28524167 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
28524088 GGATGCCATT
* * *
28524098 AAGGCTATACTTTCATAATTAGCCTCA
1 AAGGCTTTTCTTTCATAATTAGCCACA
* ** * *
28524125 AAGGTTTTTCTTTCATGTTTCGTCACA
1 AAGGCTTTTCTTTCATAATTAGCCACA
28524152 AAGGCTTTTCTTTCAT
1 AAGGCTTTTCTTTCAT
28524168 GGCGTGTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (27 bp):
AAGGCTTTTCTTTCATAATTAGCCACA
Found at i:28535649 original size:17 final size:17
Alignment explanation
Indices: 28535629--28535683 Score: 83
Period size: 17 Copynumber: 3.2 Consensus size: 17
28535619 ACACATGCCC
*
28535629 GTGTATGACACACGGGT
1 GTGTGTGACACACGGGT
* *
28535646 GTGTGTGACACATGGGC
1 GTGTGTGACACACGGGT
28535663 GTGTGTGACACACGGGT
1 GTGTGTGACACACGGGT
28535680 GTGT
1 GTGT
28535684 CCTAGGTTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.18, C:0.16, G:0.40, T:0.25
Consensus pattern (17 bp):
GTGTGTGACACACGGGT
Found at i:28535666 original size:34 final size:34
Alignment explanation
Indices: 28535619--28535683 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
28535609 AAGGATCATC
28535619 ACACATGCCCGTGTATGACACACGGGTGTGTGTG
1 ACACATGCCCGTGTATGACACACGGGTGTGTGTG
** *
28535653 ACACATGGGCGTGTGTGACACACGGGTGTGT
1 ACACATGCCCGTGTATGACACACGGGTGTGT
28535684 CCTAGGTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.35, T:0.23
Consensus pattern (34 bp):
ACACATGCCCGTGTATGACACACGGGTGTGTGTG
Found at i:28536426 original size:11 final size:11
Alignment explanation
Indices: 28536412--28536477 Score: 60
Period size: 11 Copynumber: 5.8 Consensus size: 11
28536402 TCCTTTTTCC
28536412 TATTATTTTAT
1 TATTATTTTAT
28536423 TATTATTTTAT
1 TATTATTTTAT
* *
28536434 TATTATCTTGT
1 TATTATTTTAT
* * *
28536445 TAGTATATTCT
1 TATTATTTTAT
*
28536456 TATTATGATTAT
1 TATTAT-TTTAT
28536468 TATTAGTTTT
1 TATTA-TTTT
28536478 GGTTTTTTTA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
11 33 0.73
12 11 0.24
13 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:28543785 original size:19 final size:18
Alignment explanation
Indices: 28543750--28543792 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
28543740 AATTTTTGTC
28543750 ATAAAATAATTAATTTTT
1 ATAAAATAATTAATTTTT
* *
28543768 ATAAAATAGTTAAATTTT
1 ATAAAATAATTAATTTTT
28543786 ATTAAAA
1 A-TAAAA
28543793 ATTTGAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
ATAAAATAATTAATTTTT
Found at i:28543851 original size:20 final size:21
Alignment explanation
Indices: 28543807--28543854 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
28543797 GAACATGTTA
28543807 ATTTTTAGTCAATTTTACAATT
1 ATTTTTAGTCAATTTTA-AATT
* *
28543829 ATTTTTAGTGAATTTT-GATT
1 ATTTTTAGTCAATTTTAAATT
28543849 ATTTTT
1 ATTTTT
28543855 GACAGATTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
22 15 0.62
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.60
Consensus pattern (21 bp):
ATTTTTAGTCAATTTTAAATT
Found at i:28544437 original size:19 final size:18
Alignment explanation
Indices: 28544409--28544451 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
28544399 CTCATTCACA
*
28544409 TCTCTTCTCTCACAACTTT
1 TCTCTCCTCTCAC-ACTTT
*
28544428 TCTCTCCTCTCTCACTTT
1 TCTCTCCTCTCACACTTT
*
28544446 TTTCTC
1 TCTCTC
28544452 TCATTTTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.09, C:0.40, G:0.00, T:0.51
Consensus pattern (18 bp):
TCTCTCCTCTCACACTTT
Found at i:28544712 original size:57 final size:58
Alignment explanation
Indices: 28544593--28544714 Score: 169
Period size: 57 Copynumber: 2.1 Consensus size: 58
28544583 GGTCATTTTG
28544593 ATTTTCATTTTCATTTTGGAGAAAAACCAAATTCATTTCCAAATGATTTCATTTCTCA
1 ATTTTCATTTTCATTTTGGAGAAAAACCAAATTCATTTCCAAATGATTTCATTTCTCA
* * * *
28544651 ATTTTCATTTTTATTTTGGAG-AAGACCATAA-TCATTTCCAAAT-ATTCTTATTTCTCC
1 ATTTTCATTTTCATTTTGGAGAAAAACCA-AATTCATTTCCAAATGATT-TCATTTCTCA
28544708 ATTTTCA
1 ATTTTCA
28544715 CCATTTCTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
56 3 0.05
57 33 0.57
58 22 0.38
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (58 bp):
ATTTTCATTTTCATTTTGGAGAAAAACCAAATTCATTTCCAAATGATTTCATTTCTCA
Found at i:28548820 original size:16 final size:16
Alignment explanation
Indices: 28548799--28548839 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
28548789 ATCATAAATG
28548799 CAAAAAAATATATAT-A
1 CAAAAAAAT-TATATGA
28548815 C-AAAAAATTATATGA
1 CAAAAAAATTATATGA
28548830 CAAAAAAATT
1 CAAAAAAATT
28548840 TGAATGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 9 0.39
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.24
Consensus pattern (16 bp):
CAAAAAAATTATATGA
Found at i:28550419 original size:28 final size:29
Alignment explanation
Indices: 28550387--28550658 Score: 169
Period size: 29 Copynumber: 9.4 Consensus size: 29
28550377 TCAGCGACCA
* * *
28550387 ATGAAAA-GGATAGCTTCGGCTATTGAAT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
*
28550415 ATGAAAAGGGATAGATTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
*
28550444 ATGAAAAGGGGTAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
* ** * * ** *
28550473 ATGAAAAGGGAT-GGTGACGACCATTAACT
1 ATGAAAAGGGATAGCT-TTGGCTATCGATT
* **** *
28550502 ATGAAAAGGGAT-GGTGACAACCATCAGA-T
1 ATGAAAAGGGATAGCT-TTGGCTATC-GATT
* *
28550531 ATGAAAAGGGATAACTTTGGCTATTGA-T
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
*
28550559 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
* ** * *
28550588 ATGAAAAGGGAT-GGTGACGACCATCGATT
1 ATGAAAAGGGATAGCT-TTGGCTATCGATT
* * * *
28550617 AATGAAAAGGGATAGTTTTGACCATCGAAT
1 -ATGAAAAGGGATAGCTTTGGCTATCGATT
*
28550647 ATGCAAAGGGAT
1 ATGAAAAGGGAT
28550659 GGTTACGACC
Statistics
Matches: 198, Mismatches: 38, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
28 38 0.19
29 134 0.68
30 24 0.12
31 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGGCTATCGATT
Found at i:28550581 original size:115 final size:117
Alignment explanation
Indices: 28550413--28550629 Score: 350
Period size: 115 Copynumber: 1.9 Consensus size: 117
28550403 CGGCTATTGA
* *
28550413 ATATGAAAAGGGATAGATTTGGCTATCGATTATGAAAAGGGGTAGCTTTGGCTATCGATTATGAA
1 ATATGAAAAGGGATAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
*
28550478 AAGGGATGGTGACGACCATTAACT-ATGAAAAGGGATGGTGACAACCATCAG
66 AAGGGATGGTGACGACCATCAACTAATGAAAAGGGATGGTGACAACCATCAG
*
28550529 ATATGAAAAGGGATA-ACTTTGGCTATTGA-TATGAAAAGGGATAGCTTCGGCTATCGATTATGA
1 ATATGAAAAGGGATAGA-TTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGA
* *
28550592 AAAGGGATGGTGACGACCATCGATTAATGAAAAGGGAT
65 AAAGGGATGGTGACGACCATCAACTAATGAAAAGGGAT
28550630 AGTTTTGACC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
115 55 0.59
116 38 0.41
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (117 bp):
ATATGAAAAGGGATAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
AAGGGATGGTGACGACCATCAACTAATGAAAAGGGATGGTGACAACCATCAG
Found at i:28551482 original size:29 final size:29
Alignment explanation
Indices: 28551440--28551625 Score: 173
Period size: 29 Copynumber: 6.4 Consensus size: 29
28551430 TCAACGACCA
*
28551440 ATGAAAAGGGATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
28551469 ATGAAAAGGGATAGCTTCGACTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
*
28551498 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * * *
28551527 ATGAAAAGAGAT-GGTGGCGACCATC-AATT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAA-T
* * * *
28551556 ATGAAAAGGGAT-GGTGAC-GATCATCAAAT
1 ATGAAAAGGGATAGCT-TCGGCT-ATCGAAT
* *
28551585 ATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
28551614 ATGAAAAGGGAT
1 ATGAAAAGGGAT
28551626 GGTGACGACC
Statistics
Matches: 130, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
28 3 0.02
29 121 0.93
30 6 0.05
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:28551530 original size:58 final size:58
Alignment explanation
Indices: 28551440--28551683 Score: 199
Period size: 58 Copynumber: 4.2 Consensus size: 58
28551430 TCAACGACCA
** *
28551440 ATGAAAAGGGATAGCT-TTGGCTATCGAATATGAAAAGGGATAGCTTCGACTATCGATT
1 ATGAAAAGGGAT-GCTGACGGCTATCGAATATGAAAAGGGATAGCTTCGACCATCGATT
* * * * * *
28551498 ATGAAAAGGGATAGCT-TCGGCTATCGATTATGAAAAGAGAT-GGTGGCGACCATCAATT
1 ATGAAAAGGGAT-GCTGACGGCTATCGAATATGAAAAGGGATAGCT-TCGACCATCGATT
* * * * * *
28551556 ATGAAAAGGGATGGTGAC-GATCATCAAATATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATGCTGACGGCT-ATCGAATATGAAAAGGGATAGCTTCGACCATCGATT
* * * * * * * *
28551614 ATGAAAAGGGATGGTGACGACCATCGATTAATGGAAAGGGATAGTTTCGACCACCGAAT
1 ATGAAAAGGGATGCTGACGGCTATCGAAT-ATGAAAAGGGATAGCTTCGACCATCGATT
*
28551673 ATGCAAAGGGA
1 ATGAAAAGGGA
28551684 CGGTTATGAC
Statistics
Matches: 148, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
57 6 0.04
58 108 0.73
59 34 0.23
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (58 bp):
ATGAAAAGGGATGCTGACGGCTATCGAATATGAAAAGGGATAGCTTCGACCATCGATT
Found at i:28551639 original size:29 final size:28
Alignment explanation
Indices: 28551462--28551697 Score: 166
Period size: 29 Copynumber: 8.1 Consensus size: 28
28551452 AGCTTTGGCT
* * *
28551462 ATCGAATATGAAAAGGGATAGCTTCGACT
1 ATCGATTATGAAAAGGGAT-GGTTCGACC
* * *
28551491 ATCGATTATGAAAAGGGATAGCTTCGGCT
1 ATCGATTATGAAAAGGGAT-GGTTCGACC
* *
28551520 ATCGATTATGAAAAGAGATGGTGGCGACC
1 ATCGATTATGAAAAGGGATGGT-TCGACC
* * *
28551549 ATCAATTATGAAAAGGGATGGTGACGATC
1 ATCGATTATGAAAAGGGATGGT-TCGACC
* * * * * *
28551578 ATCAAATATGAAAAGGGATAGCTTTGGCT
1 ATCGATTATGAAAAGGGAT-GGTTCGACC
*
28551607 ATCGATTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGT-TCGACC
* *
28551636 ATCGATTAATGGAAAGGGATAGTTTCGACC
1 ATCGATT-ATGAAAAGGGAT-GGTTCGACC
* * * * *
28551666 ACCGAATATGCAAAGGGACGGTTATGACC
1 ATCGATTATGAAAAGGGATGGTT-CGACC
28551695 ATC
1 ATC
28551698 ATTTAGCACA
Statistics
Matches: 166, Mismatches: 35, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
28 7 0.04
29 134 0.81
30 23 0.14
31 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (28 bp):
ATCGATTATGAAAAGGGATGGTTCGACC
Found at i:28554253 original size:377 final size:377
Alignment explanation
Indices: 28553619--28555091 Score: 2790
Period size: 377 Copynumber: 3.9 Consensus size: 377
28553609 ATGGCTTGAA
28553619 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
1 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
*
28553684 AGGTTTTTAAAGTTCACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
66 AGGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
* *
28553749 TGACCCAAGTCAGAGAATTACACAGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCATA
131 TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
28553814 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGGG
196 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGGG
28553879 CTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATATT
261 CTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATATT
28553944 TTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
326 TTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
28553996 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGC
1 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTG-
28554061 T-GGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGT
65 TAGGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGT
*
28554125 GTGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCATGTTTCCCTACTTCGAATGCCCAC
130 GTGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCAC
*
28554190 ACAGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGG
195 ACGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGG
*
28554255 GCTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAATTTATTTTCATTATAT
260 GCTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATAT
28554320 TTTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
325 TTTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
28554373 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
1 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
*
28554438 AGGTTTTTAAAGATTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
66 AGGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
28554503 TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
131 TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
*
28554568 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATAGTGTAATAGCCGAAATTTGGG
196 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGGG
*
28554633 CTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAATTTATTTTCATTATATT
261 CTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATATT
28554698 TTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
326 TTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
28554750 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
1 TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
*
28554815 AGGTTTTTAAACTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
66 AGGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
28554880 TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
131 TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
28554945 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCCGAAATTTGG
196 CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAG-CCGAAATTTGG
*
28555010 GCTAGTCGGAATAATGGTTTCGGGACCACAAAATCGAC--GAAAAAAAAATTATTTTCATTATAT
260 GCTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATAT
* *
28555073 TTTTATGGTCAATGATTTC
325 TTTTATGGTCTACGATTTC
28555092 GTGAAAATTT
Statistics
Matches: 1076, Mismatches: 17, Indels: 7
0.98 0.02 0.01
Matches are distributed among these distances:
376 42 0.04
377 985 0.92
378 49 0.05
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (377 bp):
TTTGGCCTATTTCTTGTCCACACAGCCTAAGACATAAGCGTGTGTCTCAACCGTGTGTCCCTTGT
AGGTTTTTAAAGTTTACTTTTCAAGAGTTACACGGCCTAGCACACGGGCGTGTGGCTTGGCCGTG
TGACCCAAGTCAGAGAATTACACGGGATGGGACATAGTCGTGTTTCCCTACTTCGAATGCCCACA
CGGCTTGAGACATGGGCGTGTTTCTCAGTCGTGTCAGTCACATGGTGTAATAGCCGAAATTTGGG
CTAGTCGGAATAATGGTTTTGGGACCACAAAATCGACGAGAAAAAAAAATTATTTTCATTATATT
TTTATGGTCTACGATTTCACACAATGATTTCGTGAAAATTTTGTTCGAAAAT
Found at i:28556242 original size:51 final size:52
Alignment explanation
Indices: 28556073--28556263 Score: 196
Period size: 51 Copynumber: 3.8 Consensus size: 52
28556063 TGAAAGTGAA
** *
28556073 AGTGAT-GGTCATGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAT
* * *
28556123 A-TGATAGGTCGCATGTGTAGTGCTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAT
* * * * * * *
28556174 AGCT--TCGATCACGTGTGTAGTACTTTGTGCAAGCTACTACGTGTATCGGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAT
* *
28556225 AGTGAT-GGTCACATGTGTAGTACTATGTGTAGGGTACTA
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
28556264 TGTGAACCGG
Statistics
Matches: 113, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
49 4 0.04
50 40 0.35
51 67 0.59
52 1 0.01
53 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAT
Found at i:28556273 original size:102 final size:101
Alignment explanation
Indices: 28556085--28556273 Score: 254
Period size: 102 Copynumber: 1.9 Consensus size: 101
28556075 TGATGGTCAT
* * *
28556085 GTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAATGATAGGTCGCATGTGTAGTGCTATG
1 GTGTGTAGTACTATGTGCAAGCTACTACGCGTACCAGAATGATAGGTCACATGTGTAGTACTATG
*
28556150 TGCAGGCTACTATGCGTACCGGATAGCTTCGATCAC
66 TGCAGGCTACTATGCGAACCGGATAGCTTCGATCAC
* * * *
28556186 GTGTGTAGTACTTTGTGCAAGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAAGCTACTACGCGTACCAGA-A-TGATAGGTCACATGTGTAGTACTA
* * *
28556250 TGTGTAGGGTACTATGTGAACCGG
64 TGTGCAGGCTACTATGCGAACCGG
28556274 TATCATTAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
101 33 0.44
102 38 0.51
103 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAAGCTACTACGCGTACCAGAATGATAGGTCACATGTGTAGTACTATG
TGCAGGCTACTATGCGAACCGGATAGCTTCGATCAC
Found at i:28556341 original size:46 final size:43
Alignment explanation
Indices: 28556269--28556367 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
28556259 TACTATGTGA
* *
28556269 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCTC
1 ACCGGTATCATTAATTAAAAGGTGGTTGATATGTGCTGAATC-C
* *
28556312 ACCGGATATCATTGATTACAAAGGGTGGTTGATGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGATATGTGCTGAATCC
28556358 ACCGTGTATC
1 ACCG-GTATC
28556368 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 25 0.53
47 4 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGATATGTGCTGAATCC
Found at i:28568222 original size:43 final size:42
Alignment explanation
Indices: 28568151--28568311 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
28568141 GAAAAGCTCG
* * * ** *
28568151 TACGGTGCCAACGTCCTAGACGTGGTCTTACATGTAATCA-A
1 TACGATGCCAATGTCCCAGACAAGGTCTTACATGAAATCATA
* *
28568192 CTATCGATGCCACTGTCCCAGAGAAGGTCTTACATGAAATCATA
1 -TA-CGATGCCAATGTCCCAGACAAGGTCTTACATGAAATCATA
* **
28568236 TACGATGCCAATGTCCCAGACATGGTCTTACCCGTAAATC-TCA
1 TACGATGCCAATGTCCCAGACAAGGTCTTACATG-AAATCAT-A
* * **
28568279 AACCGATGCCAACGTCCCAGACGTGGTCTTACA
1 TA-CGATGCCAATGTCCCAGACAAGGTCTTACA
28568312 CAAAATCACA
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 28 0.29
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (42 bp):
TACGATGCCAATGTCCCAGACAAGGTCTTACATGAAATCATA
Found at i:28568254 original size:42 final size:43
Alignment explanation
Indices: 28568156--28568266 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
28568146 GCTCGTACGG
* * ** *
28568156 TGCCAACGTCCTAGACGTGGTCTTACATGTAATCAACTATCGA
1 TGCCAATGTCCCAGACAAGGTCTTACATGAAATCAACTATCGA
* *
28568199 TGCCACTGTCCCAGAGAAGGTCTTACATGAAATC-A-TATACGA
1 TGCCAATGTCCCAGACAAGGTCTTACATGAAATCAACTAT-CGA
*
28568241 TGCCAATGTCCCAGACATGGTCTTAC
1 TGCCAATGTCCCAGACAAGGTCTTAC
28568267 CCGTAAATCT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
41 3 0.05
42 27 0.47
43 27 0.47
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
TGCCAATGTCCCAGACAAGGTCTTACATGAAATCAACTATCGA
Found at i:28573864 original size:124 final size:124
Alignment explanation
Indices: 28573644--28573979 Score: 507
Period size: 124 Copynumber: 2.7 Consensus size: 124
28573634 TGTTTCTGGT
* *
28573644 CAAATAGTATAAAATCGCCTCTACTAGGATGCTATTTGAGAAGAAATTATGAAATCACG-CCTTC
1 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCCCTT-
* * * *
28573708 GTGGATGCGATTTTGCTACAATAGGTCATGTAAGAAATAAATT-TTTTTGACATTTTTGAG
65 GTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAAT-AATTGTTTTTGACATTTCTAAG
*
28573768 CAAATAGTATAAAATCACCTCTACCAGGAT-CATATTTGAGAAGAAATTATGAAATCGCGCCCTT
1 CAAATAGTATAAAATCGCCTCTACCAGGATGC-TATTTGAGAAGAAATTATGAAATCGCGCCCTT
*
28573832 GTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTGTTTTTGACGTTTCTAAG
65 GTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTGTTTTTGACATTTCTAAG
* * * * *
28573892 CAAATAATATAAAATCGCCTCTACCAGGATGCTATTTGGGAAGAAATTGTGAAATTGCGCCCTCG
1 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCCCTTG
28573957 TGGACGCGATTTTGCTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
28573980 CAAGTTTGGG
Statistics
Matches: 194, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
123 5 0.03
124 184 0.95
125 5 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (124 bp):
CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCCCTTG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTGTTTTTGACATTTCTAAG
Found at i:28577091 original size:10 final size:10
Alignment explanation
Indices: 28577076--28577100 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
28577066 CAAATCTAAC
28577076 ATTATGTAAA
1 ATTATGTAAA
28577086 ATTATGTAAA
1 ATTATGTAAA
28577096 ATTAT
1 ATTAT
28577101 TAAGTCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:28577154 original size:10 final size:10
Alignment explanation
Indices: 28577139--28577165 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
28577129 TAAAATTATC
28577139 AAATTATGTA
1 AAATTATGTA
28577149 AAATTATGTA
1 AAATTATGTA
28577159 AAATTAT
1 AAATTAT
28577166 TAAGCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
AAATTATGTA
Found at i:28577210 original size:18 final size:18
Alignment explanation
Indices: 28577187--28577221 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
28577177 AAATTTAATT
28577187 AAATTAGGTAAAATTATC
1 AAATTAGGTAAAATTATC
*
28577205 AAATTATGTAAAATTAT
1 AAATTAGGTAAAATTAT
28577222 TATGTCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATTAGGTAAAATTATC
Found at i:28577241 original size:121 final size:120
Alignment explanation
Indices: 28577084--28577397 Score: 524
Period size: 121 Copynumber: 2.6 Consensus size: 120
28577074 ACATTATGTA
*
28577084 AAATTATGTAAAATTATTAAGTCTC-AAAATTTTGTTAATGGTTAGTAAAATTATCAAATTATGT
1 AAATTATGTAAAATTATTAAGTC-CAAAAATTGTGTTAATGGTTAGTAAAATTATCAAATTATGT
*
28577148 AAAATTATGTAAAATTATTAAGCCAAAAAAAATTTAATTAAATTAGGTAAAATTATC
65 AAAATTATGTAAAATTATTAAGCC-AAAAAAATTTAATAAAATTAGGTAAAATTATC
* **
28577205 AAATTATGTAAAATTATTATGTCCAAAAATTGTGTTAATGGTTAG-AATTTTTTATCAAATTATG
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAA--AATTATCAAATTATG
28577269 TAAAATTATGTAAAATTATTAAGCCAAAAAAATTTAATAAAATTAGGTAAAATTATC
64 TAAAATTATGTAAAATTATTAAGCCAAAAAAATTTAATAAAATTAGGTAAAATTATC
*
28577326 AAATTACGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATCAAATTATGTA
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATCAAATTATGTA
28577391 AAATTAT
66 AAATTAT
28577398 TAAGTCCAAG
Statistics
Matches: 180, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
120 25 0.14
121 115 0.64
122 40 0.22
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (120 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATCAAATTATGTA
AAATTATGTAAAATTATTAAGCCAAAAAAATTTAATAAAATTAGGTAAAATTATC
Done.