Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 116 of 211
Found at i:32572023 original size:24 final size:23
Alignment explanation
Indices: 32571857--32572061 Score: 114
Period size: 24 Copynumber: 8.8 Consensus size: 23
32571847 TGTTTATACT
*
32571857 TATTATTATTAAATTAATCATTAA
1 TATTATT-TTAAATTTATCATTAA
* * * ** *
32571881 TATTA-TCTAAGTGTATTGTATAT
1 TATTATTTTAAATTTATCAT-TAA
* **
32571904 TATTATTTTAGATTTATCATGTTT
1 TATTATTTTAAATTTATCAT-TAA
* *
32571928 TATTA-TTTATAATTTATCAATAT
1 TATTATTTTA-AATTTATCATTAA
* **
32571951 TATTATTTTAAATTCATTGTTAA
1 TATTATTTTAAATTTATCATTAA
*
32571974 CATTATTTTAAATTTATCATGT-A
1 TATTATTTTAAATTTATCAT-TAA
*
32571997 TATCTATTTCAAATTTATCATTAA
1 TAT-TATTTTAAATTTATCATTAA
* * *
32572021 TA-T-TTTTAAAATTATTATATAC
1 TATTATTTTAAATTTATCAT-TAA
**
32572043 TATTATTTTGGATTTATCA
1 TATTATTTTAAATTTATCA
32572062 CGTATGATTA
Statistics
Matches: 134, Mismatches: 37, Indels: 20
0.70 0.19 0.10
Matches are distributed among these distances:
21 12 0.09
22 12 0.09
23 48 0.36
24 62 0.46
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATTTTAAATTTATCATTAA
Found at i:32572084 original size:69 final size:68
Alignment explanation
Indices: 32571860--32572115 Score: 213
Period size: 69 Copynumber: 3.7 Consensus size: 68
32571850 TTATACTTAT
* * * * *
32571860 TATTA-TTAAATTAATCATTAATATTATCT-AAGTGTATTGTATATTATTATTTTAGATTTATCA
1 TATTATTTAAATTTATCATTAATATTATTTAAAAT-TATTATATACTATTATTTTAGATTTATCA
*
32571923 TGTTT
65 TG-TA
* * * * *
32571928 TATTATTTATAATTTATCAATATTATTATTTTAAATTCATTGT-TAAC-ATTATTTTAAATTTAT
1 TATTATTTA-AATTTATCATTAATATTATTTAAAATT-ATTATAT-ACTATTATTTTAGATTTAT
32571991 CATGTA
63 CATGTA
*
32571997 TATCTATTTCAAATTTATCATTAATATT-TTTAAAATTATTATATACTATTATTTTGGATTTATC
1 TAT-TATTT-AAATTTATCATTAATATTATTTAAAATTATTATATACTATTATTTTAGATTTATC
*
32572061 ACGTA
64 ATGTA
* * *
32572066 TGATTATTCTAGAA-TTATCATCAGA-ATT-TTTAAATTTATTATATATTATT
1 T-ATTATT-TA-AATTTATCATTA-ATATTATTTAAAATTATTATATACTATT
32572116 TATTGTAAAT
Statistics
Matches: 157, Mismatches: 18, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
68 11 0.07
69 72 0.46
70 64 0.41
71 10 0.06
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (68 bp):
TATTATTTAAATTTATCATTAATATTATTTAAAATTATTATATACTATTATTTTAGATTTATCAT
GTA
Found at i:32572202 original size:23 final size:23
Alignment explanation
Indices: 32572175--32572219 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
32572165 AATTGTACAT
*
32572175 TCATATATATTATTTGTTTTAAC
1 TCATATATATTATTTATTTTAAC
*
32572198 TCATATATATTGTTTATTTTAA
1 TCATATATATTATTTATTTTAA
32572220 AATTTTGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TCATATATATTATTTATTTTAAC
Found at i:32576452 original size:44 final size:44
Alignment explanation
Indices: 32576403--32576507 Score: 183
Period size: 44 Copynumber: 2.4 Consensus size: 44
32576393 AAGACTTATA
32576403 TCTTTGATCTACTCCACGCCAGTACATGAAGACAAGATCTGCTT
1 TCTTTGATCTACTCCACGCCAGTACATGAAGACAAGATCTGCTT
* *
32576447 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATTTGCTT
1 TCTTTGATCTACTCCACGCCAGTACATGAAGACAAGATCTGCTT
*
32576491 TCTTCGATCTACTCCAC
1 TCTTTGATCTACTCCAC
32576508 CACCAGTATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (44 bp):
TCTTTGATCTACTCCACGCCAGTACATGAAGACAAGATCTGCTT
Found at i:32576791 original size:89 final size:89
Alignment explanation
Indices: 32576695--32576883 Score: 254
Period size: 89 Copynumber: 2.1 Consensus size: 89
32576685 TACCGATATA
* * *
32576695 GGAAGAC-AGAACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGATAAGATCTATTTTC
1 GGAAGACAAG-ACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTC
32576759 TTCGATCTACTCCACCACCAGTATG
65 TTCGATCTACTCCACCACCAGTATG
* ** *
32576784 GGGAGACAAGATTTGCTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCT
1 GGAAGACAAGACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCT
* * * * *
32576849 TTGATCTGCTTCGCCACCGGTATG
66 TCGATCTACTCCACCACCAGTATG
32576873 GGAAGACAAGA
1 GGAAGACAAGA
32576884 TCTGCTGTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
89 84 0.98
90 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (89 bp):
GGAAGACAAGACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCT
TCGATCTACTCCACCACCAGTATG
Found at i:32576795 original size:45 final size:45
Alignment explanation
Indices: 32576630--32576886 Score: 164
Period size: 44 Copynumber: 5.8 Consensus size: 45
32576620 GTAATCTTCA
* * * * * * *
32576630 ATCTACTTCGCCACCAGTATGGGAAGATAAGATAT-GTATATTCG
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTTCTTTG
* * * * * *
32576674 ATCCACTTCGCTACC-GATATAGGAAGAC-AGAACCTACTATCTTTG
1 ATCTACTTCACCACCAG-TATGGGAAGACAAG-ATCTACTTTCTTTG
* *** * * *
32576719 ATCTACTTCA-CGCCAGTACATGAAGATAAGATCTATTTTCTTCG
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTTCTTTG
* * * * **
32576763 ATCTACTCCACCACCAGTATGGGGAGACAAGATTTGCTACCTTTG
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTTCTTTG
* ***
32576808 ATCTACTTCA-CGCCAGTACATGAAGACAAGATCTACTTTCTTTG
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTTCTTTG
* * *
32576852 ATCTGCTTCGCCACCGGTATGGGAAGACAAGATCT
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCT
32576887 GCTGTTTTTC
Statistics
Matches: 156, Mismatches: 50, Indels: 13
0.71 0.23 0.06
Matches are distributed among these distances:
43 3 0.02
44 86 0.55
45 67 0.43
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (45 bp):
ATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTTCTTTG
Found at i:32576833 original size:133 final size:133
Alignment explanation
Indices: 32576408--32576860 Score: 335
Period size: 133 Copynumber: 3.4 Consensus size: 133
32576398 TTATATCTTT
* * * *
32576408 GATCTACTCCAC-GCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCAGTAC
1 GATCTACTCCACTGCCAGTACAGGAAGACAAGACCTACTATCTTTGATCTACTTCACGCCAGTAC
* * * * * **
32576472 ATGAAGACAAGATTTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGATAGAATTACTGGC
66 ATGAAGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGAAAGATTTGCTACC
32576537 TTC
131 TTC
* * * * * * ** * * * * ** *
32576540 AATATACTCCACTGCAACTTCAGGGAGGTAAAATCC-ACCATCTTTGATCTGCTCCACTACTGCT
1 GATCTACTCCACTGCCAGTACAGGAAGACAAGA-CCTACTATCTTTGATCTACTTCACGCCAG-T
* * * * ** * * * * *
32576604 -TAGGGAGGCAAGATCTGTAATCTTCAATCTACTTCGCCACCAGTATGGGAAGATAAGATATG-T
64 ACATGAAGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGA-AAGATTTGCT
**
32576667 ATATTC
128 ACCTTC
* * * * *
32576673 GATCCACTTCGCTACC-GATATAGGAAGAC-AGAACCTACTATCTTTGATCTACTTCACGCCAGT
1 GATCTACTCCACTGCCAG-TACAGGAAGACAAG-ACCTACTATCTTTGATCTACTTCACGCCAGT
* *
32576736 ACATGAAGATAAGATCTATTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATTTGCT
64 ACATGAAGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGA-AAGATTTGCT
*
32576801 ACCTTT
128 ACCTTC
* * * * *
32576807 GATCTACTTCAC-GCCAGTACATGAAGACAAGATCTACTTTCTTTGATCTGCTTC
1 GATCTACTCCACTGCCAGTACAGGAAGACAAGACCTACTATCTTTGATCTACTTC
32576861 GCCACCGGTA
Statistics
Matches: 227, Mismatches: 83, Indels: 21
0.69 0.25 0.06
Matches are distributed among these distances:
132 14 0.06
133 190 0.84
134 23 0.10
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (133 bp):
GATCTACTCCACTGCCAGTACAGGAAGACAAGACCTACTATCTTTGATCTACTTCACGCCAGTAC
ATGAAGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGAAAGATTTGCTACC
TTC
Found at i:32576884 original size:89 final size:89
Alignment explanation
Indices: 32576714--32576889 Score: 271
Period size: 89 Copynumber: 2.0 Consensus size: 89
32576704 AACCTACTAT
* *
32576714 CTTTGATCTACTTCACGCCAGTACATGAAGATAAGATCTATTTTCTTCGATCTACTCCACCACCA
1 CTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTCCACCACCA
* *
32576779 GTATGGGGAGACAAGATTTGCTAC
66 GTATGGGAAGACAAGATCTGCTAC
* * * * *
32576803 CTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTTGATCTGCTTCGCCACCG
1 CTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTCCACCACCA
32576868 GTATGGGAAGACAAGATCTGCT
66 GTATGGGAAGACAAGATCTGCT
32576890 GTTTTTCAAC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 78 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (89 bp):
CTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTCCACCACCA
GTATGGGAAGACAAGATCTGCTAC
Found at i:32584988 original size:20 final size:20
Alignment explanation
Indices: 32584959--32584998 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32584949 TAAAGGTCTT
32584959 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
*
32584979 TAATGTATATGATGCGATGC
1 TAATGCATATGATGCGATGC
32584999 ATGAGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (20 bp):
TAATGCATATGATGCGATGC
Found at i:32589584 original size:10 final size:9
Alignment explanation
Indices: 32589569--32589611 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
32589559 TTTTTATCTT
32589569 AAATGAAATA
1 AAATGAAA-A
32589579 AAATGAAAA
1 AAATGAAAA
*
32589588 TAAAGGAAAA
1 -AAATGAAAA
*
32589598 AAATAAAAA
1 AAATGAAAA
32589607 AAATG
1 AAATG
32589612 TAAACAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 12 0.43
10 16 0.57
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (9 bp):
AAATGAAAA
Found at i:32591388 original size:20 final size:18
Alignment explanation
Indices: 32591344--32591427 Score: 55
Period size: 20 Copynumber: 4.4 Consensus size: 18
32591334 TAATTATTTG
* *
32591344 TAAAATTTAATTTCAATA
1 TAAAATTAAATTTAAATA
32591362 TATAAATTAAATATTAAATA
1 TA-AAATTAAAT-TTAAATA
32591382 TTAAAATT--ATTTAAAATA
1 -TAAAATTAAATTT-AAATA
*
32591400 TAACCATTACAAATTTAAATA
1 TAA-AATT--AAATTTAAATA
*
32591421 TATAATT
1 TAAAATT
32591428 TTATATATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
17 5 0.10
18 12 0.23
19 8 0.15
20 14 0.27
21 9 0.17
22 4 0.08
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTAAATTTAAATA
Found at i:32591756 original size:41 final size:41
Alignment explanation
Indices: 32591663--32591774 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
32591653 GCGTTTGGAC
* *
32591663 AAAAAACGCCGCAAAATA-TCTAACAGTAGCAGCGTTTTTCT
1 AAAAAACGCCGCAAAA-AGTCTAACAGTAGCAGCGTTTATCA
* * * * *
32591704 CATAAATGCCGCAAAAAGTCTAACAGTAGCGGCGTTTATGA
1 AAAAAACGCCGCAAAAAGTCTAACAGTAGCAGCGTTTATCA
* *
32591745 AAAAAACGCCGCAAAAAGTCAAACATTAGC
1 AAAAAACGCCGCAAAAAGTCTAACAGTAGC
32591775 TCCTTGTTTT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
40 1 0.02
41 57 0.98
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (41 bp):
AAAAAACGCCGCAAAAAGTCTAACAGTAGCAGCGTTTATCA
Found at i:32597226 original size:43 final size:43
Alignment explanation
Indices: 32597165--32597283 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 43
32597155 CCTTGGTCGA
32597165 GGAAAGCGCCGCTAAAGGTCATGTTTTATAGTGGCGTTTATGG
1 GGAAAGCGCCGCTAAAGGTCATGTTTTATAGTGGCGTTTATGG
* * * *
32597208 GGAAAGCACCGTTAAAGGTCATGTTCTT-TAGCGGCGTTTGTGG
1 GGAAAGCGCCGCTAAAGGTCATGTT-TTATAGTGGCGTTTATGG
* *
32597251 GAAAAGCGCCGCTAAAGGTCATGTTCTATAGTG
1 GGAAAGCGCCGCTAAAGGTCATGTTTTATAGTG
32597284 ATATTTTTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 62 0.95
44 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (43 bp):
GGAAAGCGCCGCTAAAGGTCATGTTTTATAGTGGCGTTTATGG
Found at i:32597306 original size:43 final size:43
Alignment explanation
Indices: 32597166--32597334 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
32597156 CTTGGTCGAG
* * * * * * *
32597166 GAAAGCGCCGCTAAAGGTCATGTTTTATAGTGGCGTTTATGGG
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGACATTTTTGGA
* * * * *
32597209 GAAAGCACCGTTAAAGGTCATGTTCTTTAGCGGCGTTTGTGG-
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGACATTTTTGGA
* * *
32597251 GAAAAGCGCCGCTAAAGGTCATGTTCTATAGTGATATTTTTGTGA
1 G-AAAGCACCGCTAAAGGTCATGTTCTATAGCGACATTTTTG-GA
* *
32597296 GAAA-CACCGCTAAATGTTATGTTCTATAGCGACATTTTT
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGACATTTTT
32597335 CCACATAAAT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 98 0.94
44 4 0.04
45 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
GAAAGCACCGCTAAAGGTCATGTTCTATAGCGACATTTTTGGA
Found at i:32597318 original size:86 final size:86
Alignment explanation
Indices: 32597167--32597326 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 86
32597157 TTGGTCGAGG
* * * * *
32597167 AAAGCGCCGCTAAAGGTCATGTTTTATAGTGGCGTTTATGGGGAAAGCACCGTTAAAGGTCATGT
1 AAAGCGCCGCTAAAGGTCATGTTCTATAGTGACATTTATGGAGAAAGCACCGCTAAAGGTCATGT
*
32597232 TCTTTAGCGGCGTTTGTGGGA
66 TCTATAGCGGCGTTTGTGGGA
* * * *
32597253 AAAGCGCCGCTAAAGGTCATGTTCTATAGTGATATTTTTGTGAGAAA-CACCGCTAAATGTTATG
1 AAAGCGCCGCTAAAGGTCATGTTCTATAGTGACATTTATG-GAGAAAGCACCGCTAAAGGTCATG
32597317 TTCTATAGCG
65 TTCTATAGCG
32597327 ACATTTTTCC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
86 58 0.92
87 5 0.08
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGGTCATGTTCTATAGTGACATTTATGGAGAAAGCACCGCTAAAGGTCATGT
TCTATAGCGGCGTTTGTGGGA
Found at i:32601368 original size:31 final size:31
Alignment explanation
Indices: 32601331--32601399 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
32601321 AAAAAAGAAA
*
32601331 TCATTTTAGGCACTGTGGTAAAAAACTATTT
1 TCATTTTACGCACTGTGGTAAAAAACTATTT
* * * * *
32601362 TCATTTTACGTATTGTTGTTAAAAATTATTT
1 TCATTTTACGCACTGTGGTAAAAAACTATTT
32601393 TCATTTT
1 TCATTTT
32601400 GATCACACGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.49
Consensus pattern (31 bp):
TCATTTTACGCACTGTGGTAAAAAACTATTT
Found at i:32602058 original size:19 final size:20
Alignment explanation
Indices: 32602036--32602076 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32602026 TAAAAAAACT
* *
32602036 AAAATTAATTCAAAA-ATAA
1 AAAATAAATCCAAAAGATAA
32602055 AAAATAAATCCAAAAGATAA
1 AAAATAAATCCAAAAGATAA
32602075 AA
1 AA
32602077 TAAGTGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATCCAAAAGATAA
Found at i:32602767 original size:15 final size:16
Alignment explanation
Indices: 32602747--32602776 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32602737 ATAATGGCGC
32602747 GAACCCATA-AGGTGT
1 GAACCCATACAGGTGT
32602762 GAACCCATACAGGTG
1 GAACCCATACAGGTG
32602777 AACTATTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (16 bp):
GAACCCATACAGGTGT
Found at i:32611220 original size:44 final size:43
Alignment explanation
Indices: 32611119--32611236 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 43
32611109 AAAGCTTGTA
* *
32611119 CAATGCCAACGTCCCAAACGTGGTCTTACATGTAATTAAACAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATTAAACAT
* *
32611162 TAATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAATCTCAA-AT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGT-AAT-TAAACAT
* *
32611206 CGATGCCAACGTCCCAGATGTGGTCTTACAC
1 CAATGCCAACGTCCCAGACGTGGTCTTACAC
32611237 AATAACTCAT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.03
43 26 0.42
44 29 0.47
45 5 0.08
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATTAAACAT
Found at i:32619044 original size:44 final size:43
Alignment explanation
Indices: 32618934--32619049 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
32618924 AGCTCATACA
* * *
32618934 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAACATCG
* *
32618977 ATGCCACTGTCCCAGACAG-GGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGT-AATC-AAACATCG
**
32619021 ATGCCAATGTCTTAGACGTGGTCTT-CACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG
32619050 ATAACTCATA
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
43 31 0.51
44 28 0.46
45 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAACATCG
Found at i:32631273 original size:26 final size:25
Alignment explanation
Indices: 32631221--32631277 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
32631211 CCATAATTAT
* *
32631221 ATATATTATATAATAAGACCCATGC
1 ATATATTACATAATAAGACCCACGC
*
32631246 ATATATGTACATAGTAAGACCCACGC
1 ATATAT-TACATAATAAGACCCACGC
32631272 ATATAT
1 ATATAT
32631278 ATATGTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.30
Consensus pattern (25 bp):
ATATATTACATAATAAGACCCACGC
Found at i:32635398 original size:12 final size:12
Alignment explanation
Indices: 32635381--32635405 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32635371 TGAAATGGTG
32635381 AGTAAATAAATA
1 AGTAAATAAATA
32635393 AGTAAATAAATA
1 AGTAAATAAATA
32635405 A
1 A
32635406 AATAGATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
AGTAAATAAATA
Found at i:32637371 original size:19 final size:20
Alignment explanation
Indices: 32637335--32637374 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
32637325 ATGAAGACAA
*
32637335 TAAAATGTGTATAATAAAAT
1 TAAAATGTGTAAAATAAAAT
32637355 TAAAATGT-TAAAATAAAAT
1 TAAAATGTGTAAAATAAAAT
32637374 T
1 T
32637375 TTGATTGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (20 bp):
TAAAATGTGTAAAATAAAAT
Found at i:32638610 original size:21 final size:22
Alignment explanation
Indices: 32638586--32638632 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 22
32638576 TAACTTACAT
32638586 AATATATAAAC-ATAAA-TGAAA
1 AATA-ATAAACTATAAACTGAAA
*
32638607 AATAATATACTATAAACTTGAAA
1 AATAATAAACTATAAAC-TGAAA
32638630 AAT
1 AAT
32638633 GAATCCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
23 8 0.36
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (22 bp):
AATAATAAACTATAAACTGAAA
Found at i:32641978 original size:60 final size:58
Alignment explanation
Indices: 32641893--32642018 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 58
32641883 TTATTTTTAT
* * ** *
32641893 TTTTTTGGTCATTCAACTATAAAAAGTTACAAAATGGTCACCCAACTATTAGTAATTTTC
1 TTTTTTAGTCACTCAACTATAAAAAGAGACAAAATGATCACCCAACTATT--TAATTTTC
* * *
32641953 TTTTTTAGTCACTCAACTATGAAAAGAGACAAAATGATTACCCAACTATTTAATTTTG
1 TTTTTTAGTCACTCAACTATAAAAAGAGACAAAATGATCACCCAACTATTTAATTTTC
32642011 TCTTTTTA
1 T-TTTTTA
32642019 TGGTCACCGG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 8 0.14
59 6 0.11
60 43 0.75
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.40
Consensus pattern (58 bp):
TTTTTTAGTCACTCAACTATAAAAAGAGACAAAATGATCACCCAACTATTTAATTTTC
Found at i:32642537 original size:126 final size:125
Alignment explanation
Indices: 32642289--32642530 Score: 317
Period size: 126 Copynumber: 1.9 Consensus size: 125
32642279 TTAAGAAAGA
* * * **
32642289 TTTCAAAATTTTAAAAATAAATTTACTTGTTTGGGTAAAAATATTGGAAAATTTTGAAACTTGTG
1 TTTCAAAATTCTAAAAATAAATTTACTTGTTTAGGTAAAAATATTGAAAAATTTCAAAACTTGTG
* * * * **
32642354 AGTAATTTCGAAAGGGGATTTCAATAGTTCAATTTTTTGTTCTAAATTCTAACTAAAGGT
66 AGTAATTTCAAAACGAGATTTCAAAAGAACAATTTTTTGTTCTAAATTCTAACTAAAGGT
*
32642414 TTTCAAAAATTCTAAAAATGAAA-TTACTTTTTTAGGTAAAAATATTGAAAAATTTCAAAACTTG
1 TTTC-AAAATTCTAAAAAT-AAATTTACTTGTTTAGGTAAAAATATTGAAAAATTTCAAAACTTG
* *
32642478 TGAGTAATTTCAAAACGAGATTTCAAAAGAAGAATTTTTT-TTTTCAAATTCTA
64 TGAGTAATTTCAAAACGAGATTTCAAAAGAACAATTTTTTGTTCT-AAATTCTA
32642531 CTTAAAGAGG
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
125 7 0.07
126 90 0.90
127 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (125 bp):
TTTCAAAATTCTAAAAATAAATTTACTTGTTTAGGTAAAAATATTGAAAAATTTCAAAACTTGTG
AGTAATTTCAAAACGAGATTTCAAAAGAACAATTTTTTGTTCTAAATTCTAACTAAAGGT
Found at i:32642679 original size:28 final size:28
Alignment explanation
Indices: 32642614--32642677 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
32642604 AACTTCAAAA
*
32642614 ATAAATTTTATTTAATTATAATATATTT
1 ATAAATTTTATTTAATTATAAAATATTT
* *
32642642 TTAAATTTTATTTTATTA-AAAATATTT
1 ATAAATTTTATTTAATTATAAAATATTT
*
32642669 ATACATTTT
1 ATAAATTTT
32642678 TACAAATCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 15 0.48
28 16 0.52
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (28 bp):
ATAAATTTTATTTAATTATAAAATATTT
Found at i:32642831 original size:16 final size:15
Alignment explanation
Indices: 32642805--32642834 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32642795 TACTAGTATC
32642805 GATAAATTTTAAAAT
1 GATAAATTTTAAAAT
32642820 GATAATATTTTAAAA
1 GATAA-ATTTTAAAA
32642835 AAATTCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
GATAAATTTTAAAAT
Found at i:32642908 original size:21 final size:21
Alignment explanation
Indices: 32642882--32642926 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
32642872 TTTAAAATTG
32642882 TATATATCTTAGCATAGTAGA
1 TATATATCTTAGCATAGTAGA
32642903 TATATATCTTAGCATAGTAGA
1 TATATATCTTAGCATAGTAGA
32642924 TAT
1 TAT
32642927 GATTTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (21 bp):
TATATATCTTAGCATAGTAGA
Found at i:32643341 original size:14 final size:15
Alignment explanation
Indices: 32643316--32643344 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32643306 GTTGAATGAC
32643316 TAAAATATAATTATA
1 TAAAATATAATTATA
32643331 TAAAA-ATAATTATA
1 TAAAATATAATTATA
32643345 AAAGGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAAATATAATTATA
Found at i:32644104 original size:10 final size:10
Alignment explanation
Indices: 32644089--32644113 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32644079 TCCTAACCGT
32644089 TAACTGCTGC
1 TAACTGCTGC
32644099 TAACTGCTGC
1 TAACTGCTGC
32644109 TAACT
1 TAACT
32644114 ACCACAGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (10 bp):
TAACTGCTGC
Found at i:32650073 original size:59 final size:59
Alignment explanation
Indices: 32649982--32650097 Score: 223
Period size: 59 Copynumber: 2.0 Consensus size: 59
32649972 ATTCTTGTGC
32649982 GGGGGTTTTCAACTTCTATAAAAAACTGTTGTTCGAAATTAACATTTTAATTGGTAGTG
1 GGGGGTTTTCAACTTCTATAAAAAACTGTTGTTCGAAATTAACATTTTAATTGGTAGTG
*
32650041 GGGGGTTTTCAACTTTTATAAAAAACTGTTGTTCGAAATTAACATTTTAATTGGTAG
1 GGGGGTTTTCAACTTCTATAAAAAACTGTTGTTCGAAATTAACATTTTAATTGGTAG
32650098 AGATACAATA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (59 bp):
GGGGGTTTTCAACTTCTATAAAAAACTGTTGTTCGAAATTAACATTTTAATTGGTAGTG
Found at i:32657592 original size:31 final size:32
Alignment explanation
Indices: 32657524--32657602 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 32
32657514 ATATAATATG
*
32657524 GTAATTAAATTAAATT--AATCATTATATAAT
1 GTAATTAAATTAAATTAAAATCATTACATAAT
* * *
32657554 GTGATTAACTTAAATTAAAAT-GTTACATAAT
1 GTAATTAAATTAAATTAAAATCATTACATAAT
*
32657585 GTAATTAAATTAAGTTAA
1 GTAATTAAATTAAATTAA
32657603 TAGGGGGTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 14 0.35
31 23 0.57
32 3 0.08
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.41
Consensus pattern (32 bp):
GTAATTAAATTAAATTAAAATCATTACATAAT
Found at i:32661648 original size:107 final size:101
Alignment explanation
Indices: 32661489--32661688 Score: 249
Period size: 107 Copynumber: 1.9 Consensus size: 101
32661479 TACATTTGTA
* *
32661489 GTGCCATAACCTAGTTATGGTCTTATCATCAGAACGCCATAAACCAGTTATGGTCTTACACATGT
1 GTGCCATAACCCAGTTATGGTCTTATCATCAGAACGCCATAAACCAGCTATGGTCTT--ACAT-T
* *
32661554 ATATATATACTGTCATGGTCCAACCATGGTCTTACGTTCAAT
63 -TA-A-ACACTGCCATGGTCCAACCATGGTCTTACGTTCAAT
* * * **
32661596 GTGCCATAACCCAGTTATGGTCTTTTCATTA-AAGTGCCATAGCCCAGCTATGGTCTTACATTTA
1 GTGCCATAACCCAGTTATGGTCTTATCATCAGAA-CGCCATAAACCAGCTATGGTCTTACATTTA
32661660 AACACTGCCATGGTCCAACCATGGTCTTA
65 AACACTGCCATGGTCCAACCATGGTCTTA
32661689 TCCGTAAATT
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
101 26 0.31
102 1 0.01
103 2 0.02
104 1 0.01
105 4 0.05
106 2 0.02
107 47 0.57
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (101 bp):
GTGCCATAACCCAGTTATGGTCTTATCATCAGAACGCCATAAACCAGCTATGGTCTTACATTTAA
ACACTGCCATGGTCCAACCATGGTCTTACGTTCAAT
Found at i:32661661 original size:33 final size:33
Alignment explanation
Indices: 32661579--32661661 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
32661569 TGGTCCAACC
* * * *
32661579 ATGGTCTTACGTTCAATGTGCCATAACCCAGTT
1 ATGGTCTTACATTTAAAGTGCCATAACCCAGCT
* *
32661612 ATGGTCTTTTCA-TTAAAGTGCCATAGCCCAGCT
1 ATGGTC-TTACATTTAAAGTGCCATAACCCAGCT
32661645 ATGGTCTTACATTTAAA
1 ATGGTCTTACATTTAAA
32661662 CACTGCCATG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
32 4 0.10
33 34 0.83
34 3 0.07
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAGTGCCATAACCCAGCT
Found at i:32675615 original size:39 final size:40
Alignment explanation
Indices: 32675518--32675697 Score: 192
Period size: 40 Copynumber: 4.5 Consensus size: 40
32675508 AATGATGTCC
* * *
32675518 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
* *
32675558 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
*
32675598 GGCTAAG-CCCGAAGGCATTT-TGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* * *
32675636 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
*
32675676 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
32675698 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
38 22 0.19
39 25 0.21
40 61 0.52
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:32683521 original size:39 final size:40
Alignment explanation
Indices: 32683426--32683609 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
32683416 TTGAATGATG
* * *
32683426 TCCGGGCTAAGTCCCGAA-GC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
32683464 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32683505 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32683544 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32683583 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32683610 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 51 0.41
40 65 0.52
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32683561 original size:79 final size:81
Alignment explanation
Indices: 32683426--32683609 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32683416 TTGAATGATG
*
32683426 TCCGGGCTAAGTCCCGAA-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32683489 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32683504 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32683566 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32683584 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32683610 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 7 0.08
79 62 0.68
80 22 0.24
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32683631 original size:79 final size:79
Alignment explanation
Indices: 32683478--32683642 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32683468 GGACTAAGAT
* **
32683478 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32683543 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32683557 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32683620 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32683636 CCGAAGG
1 CCGAAGG
32683643 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32687785 original size:13 final size:13
Alignment explanation
Indices: 32687767--32687792 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32687757 TTCTCTATTC
32687767 TTTACATCACTTT
1 TTTACATCACTTT
32687780 TTTACATCACTTT
1 TTTACATCACTTT
32687793 ACATCACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTACATCACTTT
Found at i:32687877 original size:23 final size:23
Alignment explanation
Indices: 32687851--32687894 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
32687841 TCCTTTTGTT
32687851 TTTTTAGCAAGCATGATATTTGG
1 TTTTTAGCAAGCATGATATTTGG
** *
32687874 TTTTTTTCAAGTATGATATTT
1 TTTTTAGCAAGCATGATATTT
32687895 CTCTAATCTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (23 bp):
TTTTTAGCAAGCATGATATTTGG
Found at i:32703625 original size:24 final size:23
Alignment explanation
Indices: 32703597--32703654 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
32703587 TCTTTTCTTT
* *
32703597 ATTTTCTTTTCATTTTTAGATTAG
1 ATTTTCTTTTC-TTTCTAGAATAG
*
32703621 GTTTTCTCTTTCTTTCTAGAATAG
1 ATTTTCT-TTTCTTTCTAGAATAG
*
32703645 ATTTTGTTTT
1 ATTTTCTTTT
32703655 TTTTGTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 3 0.11
24 21 0.75
25 4 0.14
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.62
Consensus pattern (23 bp):
ATTTTCTTTTCTTTCTAGAATAG
Found at i:32709729 original size:26 final size:25
Alignment explanation
Indices: 32709700--32709748 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
32709690 GTACATTATT
* *
32709700 ATTTTTAATTATTATTTATTTGTTTG
1 ATTTGTAATCATTA-TTATTTGTTTG
*
32709726 ATTTGTAATCCTTATTATTTGTT
1 ATTTGTAATCATTATTATTTGTT
32709749 ATATTTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.65
Consensus pattern (25 bp):
ATTTGTAATCATTATTATTTGTTTG
Found at i:32720246 original size:16 final size:18
Alignment explanation
Indices: 32720215--32720247 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
32720205 AATACAAAAG
32720215 TGGTATCGATATAAAATA
1 TGGTATCGATATAAAATA
32720233 TGGTATC-A-ATAAAAT
1 TGGTATCGATATAAAAT
32720248 TCAATAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (18 bp):
TGGTATCGATATAAAATA
Found at i:32722662 original size:21 final size:21
Alignment explanation
Indices: 32722636--32722689 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
32722626 TTAAAACCTG
32722636 ATGAGTATCGATACTTTTT-AA
1 ATGAGTATCGATA-TTTTTCAA
32722657 ATGAGTATCGATATTTTTCAA
1 ATGAGTATCGATATTTTTCAA
*
32722678 A-AAGTATCGATA
1 ATGAGTATCGATA
32722690 AAATAGTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (21 bp):
ATGAGTATCGATATTTTTCAA
Found at i:32722683 original size:20 final size:21
Alignment explanation
Indices: 32722639--32722689 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
32722629 AAACCTGATG
*
32722639 AGTATCGATACTTTTTAAATG
1 AGTATCGATACTTTTTAAATA
32722660 AGTATCGATA-TTTTTCAAA-A
1 AGTATCGATACTTTTT-AAATA
32722680 AGTATCGATA
1 AGTATCGATA
32722690 AAATAGTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (21 bp):
AGTATCGATACTTTTTAAATA
Found at i:32723233 original size:13 final size:13
Alignment explanation
Indices: 32723215--32723241 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32723205 TGATTCGAAG
32723215 TGTTAATAAATTC
1 TGTTAATAAATTC
32723228 TGTTAATAAATTC
1 TGTTAATAAATTC
32723241 T
1 T
32723242 AGAACTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TGTTAATAAATTC
Found at i:32728594 original size:32 final size:37
Alignment explanation
Indices: 32728546--32728614 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 37
32728536 AGTTCTAACT
32728546 TAAATAACAACAGAATTTA-AGA-C-ATAC-ATTTCA
1 TAAATAACAACAGAATTTATAGATCAATACAATTTCA
*
32728579 TAAATAA-AGCAGAATTTATAGATCAATACAATTTCA
1 TAAATAACAACAGAATTTATAGATCAATACAATTTCA
32728615 CAGATAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 10 0.32
33 10 0.32
34 1 0.03
35 4 0.13
36 6 0.19
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (37 bp):
TAAATAACAACAGAATTTATAGATCAATACAATTTCA
Found at i:32738562 original size:44 final size:44
Alignment explanation
Indices: 32738499--32738586 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
32738489 GGACTTTTAC
*
32738499 TAATGATATTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
1 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
32738543 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
1 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
32738587 GAATCCTGAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (44 bp):
TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
Found at i:32746876 original size:15 final size:14
Alignment explanation
Indices: 32746855--32746898 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
32746845 ACAACTATGG
32746855 AAAAAAATGGGAAA
1 AAAAAAATGGGAAA
*
32746869 AGAAAAAATAGAGAAA
1 A-AAAAAAT-GGGAAA
32746885 AAAAAACATGGGAA
1 AAAAAA-ATGGGAA
32746899 CAATGGGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 1 0.04
15 16 0.64
16 8 0.32
ACGTcount: A:0.70, C:0.02, G:0.20, T:0.07
Consensus pattern (14 bp):
AAAAAAATGGGAAA
Found at i:32748600 original size:16 final size:16
Alignment explanation
Indices: 32748569--32748605 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
32748559 ATGTGAAGAA
32748569 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
32748585 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
32748601 TATTA
1 TATTA
32748606 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:32748623 original size:19 final size:18
Alignment explanation
Indices: 32748591--32748626 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32748581 TTATTATTTT
*
32748591 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
32748609 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
32748627 CAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:32749370 original size:15 final size:15
Alignment explanation
Indices: 32749350--32749390 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
32749340 CTTGATAAAT
32749350 TGAAAAATTAAATGC
1 TGAAAAATTAAATGC
* *
32749365 TGAAAAAATAAATGT
1 TGAAAAATTAAATGC
32749380 TGAAAAATTAA
1 TGAAAAATTAA
32749391 GTATTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.02, G:0.12, T:0.27
Consensus pattern (15 bp):
TGAAAAATTAAATGC
Found at i:32749898 original size:56 final size:56
Alignment explanation
Indices: 32749827--32749940 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
32749817 TTTTTTTACT
* *
32749827 TATCTAAATCTGAATTAGCAAATGTGTCTAAAAATATGAATCCGTAAATTATTGAG
1 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
*
32749883 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCTGTAAATTATTGAG
1 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
32749939 TA
1 TA
32749941 CTATTGTGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (56 bp):
TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
Found at i:32753151 original size:12 final size:12
Alignment explanation
Indices: 32753136--32753161 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32753126 ATCCCTAAAC
32753136 TTAAGAATTGTT
1 TTAAGAATTGTT
32753148 TTAAGAATTGTT
1 TTAAGAATTGTT
32753160 TT
1 TT
32753162 CATATTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (12 bp):
TTAAGAATTGTT
Found at i:32754224 original size:69 final size:69
Alignment explanation
Indices: 32754134--32754266 Score: 173
Period size: 69 Copynumber: 1.9 Consensus size: 69
32754124 GACTAATATG
* * * *
32754134 TTTTATAACTATTTTTATATTTTTAATTATGATTTTTTAG-T-TTATAAGAA-TATATAACATAT
1 TTTTAAAAATATTTATATATTTTT-ATTATAATTTTTTAGCTATTATAA-AATTATATAA-ATAT
32754196 ATCTTGA
63 ATCTTGA
*
32754203 TTTTAAAAATATTTATATATTTTTATTATAATTTTTTAGCTATTATAAAATTTTATAAATATAT
1 TTTTAAAAATATTTATATATTTTTATTATAATTTTTTAGCTATTATAAAATTATATAAATATAT
32754267 ATGACTTGAT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
68 14 0.25
69 30 0.54
70 12 0.21
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (69 bp):
TTTTAAAAATATTTATATATTTTTATTATAATTTTTTAGCTATTATAAAATTATATAAATATATC
TTGA
Found at i:32766961 original size:30 final size:30
Alignment explanation
Indices: 32766927--32766988 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
32766917 TGAATTATTT
* *
32766927 TTAAAAATTTGGTAACTCTTTTTATAAATA
1 TTAAAAATTAGATAACTCTTTTTATAAATA
** *
32766957 TTAAAAATTAGATGCCTCTTTTTGTAAATA
1 TTAAAAATTAGATAACTCTTTTTATAAATA
32766987 TT
1 TT
32766989 TTCAAAAAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (30 bp):
TTAAAAATTAGATAACTCTTTTTATAAATA
Found at i:32771366 original size:28 final size:28
Alignment explanation
Indices: 32771326--32771409 Score: 159
Period size: 28 Copynumber: 3.0 Consensus size: 28
32771316 ATTGAATGAG
32771326 AAATGTGACAATATATCTGTTGTGATGT
1 AAATGTGACAATATATCTGTTGTGATGT
32771354 AAATGTGACAATATATCTGTTGTGATGT
1 AAATGTGACAATATATCTGTTGTGATGT
*
32771382 AAATGTGACAATATATTTGTTGTGATGT
1 AAATGTGACAATATATCTGTTGTGATGT
32771410 CATTTATGGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (28 bp):
AAATGTGACAATATATCTGTTGTGATGT
Found at i:32772340 original size:19 final size:19
Alignment explanation
Indices: 32772299--32772342 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32772289 GTTATTTTAT
**
32772299 TAATAAAATAAAAAAAGGT
1 TAATAAAATAAAAAAAGCA
32772318 TAATAAAATAAAGAAAA-CA
1 TAATAAAATAAA-AAAAGCA
32772337 TAATAA
1 TAATAA
32772343 TTTTCTTCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (19 bp):
TAATAAAATAAAAAAAGCA
Found at i:32779626 original size:465 final size:464
Alignment explanation
Indices: 32778755--32779684 Score: 1689
Period size: 465 Copynumber: 2.0 Consensus size: 464
32778745 AATTTTCAAC
**
32778755 ACTGCCTGAGATATCGTGATATCACCTTCGTTAGGGGGACAAACTTGGACAAAAAGGGCAACCTT
1 ACTGCCTGAGATATCGTGATATCACCTTCGTTAGAAGGACAAACTTGGACAAAAAGGGCAACCTT
* * *
32778820 TTTCTACCAAGCCCACTAATCACATAAGGCTCGTGTACGGGCATTTTTGGTATAAAAAATTCATT
66 TTTCTACCAAGCCCACTAATCACATAAGGCTCGTGTACGGACATTTTTGGCATAAAAAATTCATC
*
32778885 GAAATACACTTCAACATAGCTAAAAATTGCCGAGGAGGAAAGAAACACATATTAACTTAGTGTTA
131 GAAATACACTTCAACATAGCTAAAAATTGCCGAGGAGGAAAGAAACACACATTAACTTAGTGTTA
32778950 GGTTTAATTTTCTCTAGGTTTTCTTTAGTTTCCTTTGCACTTTTTCCAGGGTTTTTATTTTTCTC
196 GGTTTAATTTTCTCTAGGTTTTCTTTAGTTTCCTTTGCACTTTTTCCAGGGTTTTTATTTTTCTC
* *
32779015 TTCTTCTACCTTAGATTATAGTTTATTTTTTTGCATTTACTTATTGTTCTTTATGTTAGTTAACA
261 TTCTTCTACCTTAGATTATAGTTTATTTTTCTACATTTACTTATTGTTCTTTATGTTAGTTAACA
*
32779080 CTGTAGCTAAGGTTTATTTGTATTTCTAGCCCCTGTACTTTGTTTTAAAGAATTTTTAAGCTTTA
326 CTGTAGCTAAGGTTTATTTGCATTTCTAGCCCCTGTACTTTGTTTTAAAGAATTTTTAAGCTTTA
32779145 GGTTCAGTTTTTTTTTTTACTTTAAATCTATCAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGA
391 GGTTCAG-TTTTTTTTTTACTTTAAATCTATCAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGA
32779210 TTTCTCAATA
455 TTTCTCAATA
*
32779220 ACTGCCTGAGATATCGTGATATCACCTTTGTTAGAAGGACAAACTTGGACAAAAAGGGCAACCTT
1 ACTGCCTGAGATATCGTGATATCACCTTCGTTAGAAGGACAAACTTGGACAAAAAGGGCAACCTT
*
32779285 TTTCTACCAAGCCCACTAATCACATAAGGCTCGTGTACGGACATTTTTGGCATCAAAAATTCATC
66 TTTCTACCAAGCCCACTAATCACATAAGGCTCGTGTACGGACATTTTTGGCATAAAAAATTCATC
*
32779350 GGAATACACTTCAACATAGCTAAAAATTGCCGAGGAGGAAAGAAACACACATTAACTTAGTGTTA
131 GAAATACACTTCAACATAGCTAAAAATTGCCGAGGAGGAAAGAAACACACATTAACTTAGTGTTA
*
32779415 GGTTTAATTTTCTCTAGGTTTTCTTTAGTTTCCTTTGCACTTTTTCTAGGGTTTTTATTTTTCTC
196 GGTTTAATTTTCTCTAGGTTTTCTTTAGTTTCCTTTGCACTTTTTCCAGGGTTTTTATTTTTCTC
32779480 TTCTTCTACCTTAGATTATAGTTTATTTTTCTACATTTACTTATTGTTCTTTATGTTAGTTAACA
261 TTCTTCTACCTTAGATTATAGTTTATTTTTCTACATTTACTTATTGTTCTTTATGTTAGTTAACA
* * *
32779545 CTGTAGTTAAGGTTTATTTGCATTTCTAGCCCTTGTACTTTGTTTTAAAGGATTTTTAAGCTTTA
326 CTGTAGCTAAGGTTTATTTGCATTTCTAGCCCCTGTACTTTGTTTTAAAGAATTTTTAAGCTTTA
*
32779610 GGTTCAGTTTTTTTTTTACTTTAAATCTATCAAAGCTTGTTCCTTTTATGTTTCTTTCTTTAGAT
391 GGTTCAGTTTTTTTTTTACTTTAAATCTATCAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGAT
*
32779675 TTCTCTATA
456 TTCTCAATA
32779684 A
1 A
32779685 ATGCTTTTGG
Statistics
Matches: 447, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
464 66 0.15
465 381 0.85
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (464 bp):
ACTGCCTGAGATATCGTGATATCACCTTCGTTAGAAGGACAAACTTGGACAAAAAGGGCAACCTT
TTTCTACCAAGCCCACTAATCACATAAGGCTCGTGTACGGACATTTTTGGCATAAAAAATTCATC
GAAATACACTTCAACATAGCTAAAAATTGCCGAGGAGGAAAGAAACACACATTAACTTAGTGTTA
GGTTTAATTTTCTCTAGGTTTTCTTTAGTTTCCTTTGCACTTTTTCCAGGGTTTTTATTTTTCTC
TTCTTCTACCTTAGATTATAGTTTATTTTTCTACATTTACTTATTGTTCTTTATGTTAGTTAACA
CTGTAGCTAAGGTTTATTTGCATTTCTAGCCCCTGTACTTTGTTTTAAAGAATTTTTAAGCTTTA
GGTTCAGTTTTTTTTTTACTTTAAATCTATCAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGAT
TTCTCAATA
Found at i:32780813 original size:35 final size:35
Alignment explanation
Indices: 32780790--32780889 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 35
32780780 TAATAGACCC
*
32780790 TTTCCATGATGCCGCTTCGTAGAGCCAGTAGATCA
1 TTTCCATGATGCCGCTCCGTAGAGCCAGTAGATCA
* *
32780825 TCTCCATGATGCCGCTCCTTAGAGCCAGTAGATCA
1 TTTCCATGATGCCGCTCCGTAGAGCCAGTAGATCA
** * *
32780860 TTTCCATGATGTTGCTCCGCAGAGCGAGTA
1 TTTCCATGATGCCGCTCCGTAGAGCCAGTA
32780890 AACTATTTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (35 bp):
TTTCCATGATGCCGCTCCGTAGAGCCAGTAGATCA
Found at i:32793342 original size:27 final size:27
Alignment explanation
Indices: 32793281--32793362 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
32793271 TAAAATAGTC
*
32793281 TTTTACCC-ACCA-GGGCATTACGGTCA
1 TTTTACCCTA-CAGGGGTATTACGGTCA
*
32793307 TTTTACCCTACAGGGGTATTACGGTTA
1 TTTTACCCTACAGGGGTATTACGGTCA
* *
32793334 GTTTT-CCCTACAGGGGTCTTACGATCA
1 -TTTTACCCTACAGGGGTATTACGGTCA
32793361 TT
1 TT
32793363 ATCCTATTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
26 12 0.25
27 32 0.67
28 4 0.08
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
TTTTACCCTACAGGGGTATTACGGTCA
Found at i:32795049 original size:12 final size:12
Alignment explanation
Indices: 32795034--32795062 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
32795024 CCCTGATACC
32795034 CTCCACATATCA
1 CTCCACATATCA
32795046 CTCCACATATCA
1 CTCCACATATCA
32795058 CTCCA
1 CTCCA
32795063 ACCTCTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.45, G:0.00, T:0.24
Consensus pattern (12 bp):
CTCCACATATCA
Found at i:32798935 original size:44 final size:46
Alignment explanation
Indices: 32798852--32798942 Score: 159
Period size: 44 Copynumber: 2.0 Consensus size: 46
32798842 TTTGCAGTAT
*
32798852 TGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGGAA
1 TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGGAA
32798898 TGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGGAA
1 TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGGAA
32798942 T
1 T
32798943 AGAGATGTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 24 0.55
45 3 0.07
46 17 0.39
ACGTcount: A:0.26, C:0.04, G:0.32, T:0.37
Consensus pattern (46 bp):
TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGGAA
Found at i:32798938 original size:39 final size:44
Alignment explanation
Indices: 32798852--32798955 Score: 128
Period size: 39 Copynumber: 2.4 Consensus size: 44
32798842 TTTGCAGTAT
*
32798852 TGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGGAA
1 TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--ATGGAA
32798898 TGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-GAA
1 TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGGAA
**
32798937 TGGAATAGAGATGTAATAG
1 TGGAATAGAGGCGTAATAG
32798956 CATAAGAAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
39 18 0.33
40 2 0.04
43 1 0.02
44 13 0.24
45 3 0.06
46 17 0.31
ACGTcount: A:0.29, C:0.04, G:0.32, T:0.36
Consensus pattern (44 bp):
TGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGGAA
Found at i:32799124 original size:18 final size:18
Alignment explanation
Indices: 32799101--32799152 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
32799091 TTATTATTAA
32799101 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
32799119 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
*
32799136 ATATGAATTTACTAAAA
1 ATAT-AATTTAATAAAA
32799153 TCATAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
17 9 0.29
18 19 0.61
19 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:32799153 original size:18 final size:17
Alignment explanation
Indices: 32799101--32799234 Score: 93
Period size: 17 Copynumber: 8.0 Consensus size: 17
32799091 TTATTATTAA
32799101 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
32799119 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
32799136 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * *
32799154 -CATAATAT-ATAATACT
1 ATATAATTTAATAA-AAT
* *
32799170 ATAAAATATAATTTAAAAT
1 ATATAATTTAA--TAAAAT
* *
32799189 A-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
32799201 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
32799218 ATATAATTTGATAAAAT
1 ATATAATTTAATAAAAT
32799235 TCTTAGTATT
Statistics
Matches: 90, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
12 1 0.01
13 5 0.06
14 3 0.03
15 5 0.06
16 9 0.10
17 34 0.38
18 27 0.30
19 3 0.03
20 3 0.03
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32799161 original size:41 final size:39
Alignment explanation
Indices: 32799116--32799298 Score: 112
Period size: 38 Copynumber: 4.6 Consensus size: 39
32799106 ATTTAATAAA
32799116 AATATATAATTTAATAAAATATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATATAT-AATTTA-TAAAATCAT
* * *
32799157 AATATATAA--TACTATAAA-ATATAATTTAAAATAATTATT
1 AATATATAATTTAATA-AAATATATAATTTATAA-AATCA-T
* *
32799196 ATTAAATATAATTTAATAAAATATATAATTTGATAAAATTCTT
1 A--ATATATAATTTAATAAAATATATAATTT-ATAAAA-TCAT
* * * *
32799239 AGTAT-TAA-AT-AT-TATTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATATAT-AATTTA-TAAAATCAT
*
32799276 AATATATAATACT-ATAAAATATA
1 AATATATAAT-TTAATAAAATATA
32799299 ATTTAAAATA
Statistics
Matches: 108, Mismatches: 18, Indels: 32
0.68 0.11 0.20
Matches are distributed among these distances:
37 16 0.15
38 25 0.23
39 11 0.10
40 9 0.08
41 23 0.21
42 3 0.03
43 17 0.16
44 4 0.04
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (39 bp):
AATATATAATTTAATAAAATATATAATTTATAAAATCAT
Found at i:32802034 original size:15 final size:14
Alignment explanation
Indices: 32802014--32802044 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
32802004 GGGAATAAAC
32802014 AAATAAAATGATGAA
1 AAATAAAATGAT-AA
32802029 AAATAAAATGATAA
1 AAATAAAATGATAA
32802043 AA
1 AA
32802045 TTAATCATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (14 bp):
AAATAAAATGATAA
Found at i:32803590 original size:89 final size:86
Alignment explanation
Indices: 32803464--32803768 Score: 296
Period size: 88 Copynumber: 3.4 Consensus size: 86
32803454 ACAATTAAAC
*
32803464 CAATTGGTTACTTGAACTTTTC-AAATGTATAAAAAAAGTTCTTAATTTAAAAAAAAAAAACAAT
1 CAATTGG-TACTTGAAC-TTTCAAAATGCATAAAAAAAGTTCTTAATTTAAAAAAAAAAAACAAT
32803528 TAAGCTCTTTCTTTTTTTTTTCACT
64 TAAGC-C-TTCTTTTTTTTTTCACT
* * * * *
32803553 CAATTAGGTACTTGAACTTTCAAAATGCATCAAAAAAGCTCTCAAACTTAAAAAAAAAGAAGCAA
1 CAATT-GGTACTTGAACTTTCAAAATGCATAAAAAAAGTTCT-TAATTTAAAAAAAAA-AAACAA
* *
32803618 TTAAGCC-CCTTCTTTTTTTCACT
63 TTAAGCCTTCTTTTTTTTTTCACT
* ** *
32803641 CAATTGAGTACTTGAACTTTCAAAATGCATAAAAAAAACCTTCAATTTTTTTTCAAAAAAAAAAA
1 CAATTG-GTACTTGAACTTTCAAAATGCAT-AAAAAAA-GTTC---TTAATTTAAAAAAAAAAAA
32803706 CAATTAAGCC--CTTTTTTTTTCTGCA-T
60 CAATTAAGCCTTCTTTTTTTTT-T-CACT
**
32803732 CCAATTGGGTACTTGAACTGCCAAAATGCATAAAAAA
1 -CAATT-GGTACTTGAACTTTCAAAATGCATAAAAAA
32803769 GACCCTTTGA
Statistics
Matches: 182, Mismatches: 20, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
87 1 0.01
88 46 0.25
89 37 0.20
90 27 0.15
91 31 0.17
92 38 0.21
93 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.34
Consensus pattern (86 bp):
CAATTGGTACTTGAACTTTCAAAATGCATAAAAAAAGTTCTTAATTTAAAAAAAAAAAACAATTA
AGCCTTCTTTTTTTTTTCACT
Found at i:32803961 original size:11 final size:10
Alignment explanation
Indices: 32803927--32803990 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 10
32803917 TAAATTTTAA
32803927 TAAAAA-TA-
1 TAAAAATTAT
*
32803935 TAAAAAATAT
1 TAAAAATTAT
*
32803945 TTAAAATTGAT
1 TAAAAATT-AT
32803956 TAAAAATTAT
1 TAAAAATTAT
*
32803966 AAAAAAATTA-
1 -TAAAAATTAT
32803976 TAAAAATTA-
1 TAAAAATTAT
32803985 TAAAAA
1 TAAAAA
32803991 AAAAATTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
8 6 0.13
9 16 0.34
10 8 0.17
11 17 0.36
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:32803970 original size:20 final size:19
Alignment explanation
Indices: 32803918--32803991 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
32803908 AAAAATCACT
* *
32803918 AAATTTTAATAAAAATATAA
1 AAATTATAA-AAAATTATAA
* **
32803938 AAAATATTTAAAATTGATTAA
1 AAATTATAAAAAATT-A-TAA
32803959 AAATTATAAAAAAATTATAA
1 AAATTAT-AAAAAATTATAA
32803979 AAATTATAAAAAA
1 AAATTATAAAAAA
32803992 AAAATTATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
19 11 0.26
20 16 0.37
21 10 0.23
22 6 0.14
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (19 bp):
AAATTATAAAAAATTATAA
Found at i:32803996 original size:14 final size:14
Alignment explanation
Indices: 32803977--32804003 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32803967 AAAAAATTAT
32803977 AAAAATTATAAAAA
1 AAAAATTATAAAAA
32803991 AAAAATTATAAAA
1 AAAAATTATAAAA
32804004 TGCATCAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATTATAAAAA
Found at i:32804003 original size:9 final size:9
Alignment explanation
Indices: 32803873--32803990 Score: 71
Period size: 9 Copynumber: 12.6 Consensus size: 9
32803863 ACATGTGACA
*
32803873 AAAAATAAT
1 AAAAATTAT
32803882 AAAAA--AT
1 AAAAATTAT
*
32803889 AAAAATAAAT
1 AAAAAT-TAT
*
32803899 AAAATTTAT
1 AAAAATTAT
*
32803908 AAAAATCACT
1 AAAAATTA-T
**
32803918 AAATTTTAAT
1 AAAAATT-AT
32803928 AAAAA-TAT
1 AAAAATTAT
*
32803936 AAAAAATATT
1 AAAAATTA-T
*
32803946 TAAAATTGATT
1 AAAAATT-A-T
32803957 AAAAATTAT
1 AAAAATTAT
32803966 AAAAAAATTAT
1 --AAAAATTAT
32803977 AAAAATTAT
1 AAAAATTAT
32803986 AAAAA
1 AAAAA
32803991 AAAAATTATA
Statistics
Matches: 87, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
7 7 0.08
8 7 0.08
9 31 0.36
10 23 0.26
11 19 0.22
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:32804003 original size:11 final size:11
Alignment explanation
Indices: 32803957--32803992 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
32803947 AAAATTGATT
32803957 AAAAATTATAA
1 AAAAATTATAA
32803968 AAAAATTAT--
1 AAAAATTATAA
32803977 AAAAATTATAA
1 AAAAATTATAA
32803988 AAAAA
1 AAAAA
32803993 AAATTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.39
11 14 0.61
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:32804256 original size:28 final size:26
Alignment explanation
Indices: 32804225--32804277 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
32804215 CTTTACATTT
32804225 TTTATAACTTTATTATGACTTTAAAAAA
1 TTTATAACTTTATTAT-A-TTTAAAAAA
* *
32804253 TTTATAATTTTTTTATATTTAAAAA
1 TTTATAACTTTATTATATTTAAAAA
32804278 TTTTCCTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.35
27 1 0.04
28 14 0.61
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (26 bp):
TTTATAACTTTATTATATTTAAAAAA
Found at i:32804319 original size:38 final size:39
Alignment explanation
Indices: 32804248--32804341 Score: 95
Period size: 38 Copynumber: 2.5 Consensus size: 39
32804238 TATGACTTTA
* * *
32804248 AAAAATTTATAATTTTT-TTATATTTAAAAA-TTTTCCT
1 AAAATTTTATAATTTTTAATATATTTAAAAATTTTTACT
* * *
32804285 ACAAATTTTATAATTTTTAATATATTT-TATATTTTTATT
1 A-AAATTTTATAATTTTTAATATATTTAAAAATTTTTACT
*
32804324 AAAATTTAATAATTTTTA
1 AAAATTTTATAATTTTTA
32804342 TAAAATTTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 1 0.02
38 33 0.70
39 13 0.28
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.56
Consensus pattern (39 bp):
AAAATTTTATAATTTTTAATATATTTAAAAATTTTTACT
Found at i:32804350 original size:19 final size:19
Alignment explanation
Indices: 32804244--32804361 Score: 82
Period size: 19 Copynumber: 6.3 Consensus size: 19
32804234 TTATTATGAC
*
32804244 TTTAAAAAATTT-ATAATT
1 TTTATAAAATTTAATAATT
* * *
32804262 TTT-TTATATTTAAAAATT
1 TTTATAAAATTTAATAATT
** *
32804280 TTCCTACAAATTTTATAATT
1 TTTATA-AAATTTAATAATT
* *
32804300 TTTA-ATATATTTTAT-ATT
1 TTTATA-AAATTTAATAATT
32804318 TTTATTAAAATTTAATAATT
1 TTTA-TAAAATTTAATAATT
* *
32804338 TTTATAAAATTTATTGATT
1 TTTATAAAATTTAATAATT
32804357 TTTAT
1 TTTAT
32804362 TTTTATAATT
Statistics
Matches: 77, Mismatches: 17, Indels: 11
0.73 0.16 0.10
Matches are distributed among these distances:
17 5 0.06
18 17 0.22
19 35 0.45
20 20 0.26
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.58
Consensus pattern (19 bp):
TTTATAAAATTTAATAATT
Found at i:32806124 original size:15 final size:16
Alignment explanation
Indices: 32806106--32806136 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32806096 ACATATGTAT
32806106 TAGAATAGTTA-AACA
1 TAGAATAGTTAGAACA
32806121 TAGAATAGTTAGAACA
1 TAGAATAGTTAGAACA
32806137 ACTTTAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (16 bp):
TAGAATAGTTAGAACA
Found at i:32809659 original size:28 final size:28
Alignment explanation
Indices: 32809625--32809712 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
32809615 CGTAAGTTGA
32809625 GTTCACTAGTCTGTTTGGCAAATTGAGG
1 GTTCACTAGTCTGTTTGGCAAATTGAGG
** *
32809653 GTTCACTAG-CATGTTTGGTGAATTGGGG
1 GTTCACTAGTC-TGTTTGGCAAATTGAGG
* * * *
32809681 GTTCGCTAGTCTGTTTAGCTAACTGAGG
1 GTTCACTAGTCTGTTTGGCAAATTGAGG
32809709 GTTC
1 GTTC
32809713 GCCAGTTGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 47 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (28 bp):
GTTCACTAGTCTGTTTGGCAAATTGAGG
Found at i:32815159 original size:18 final size:18
Alignment explanation
Indices: 32815136--32815171 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32815126 TTTCATAATT
*
32815136 TCACTTTTTCACTTTCAA
1 TCACTTTTCCACTTTCAA
*
32815154 TCACTTTTCCATTTTCAA
1 TCACTTTTCCACTTTCAA
32815172 GTCAATATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (18 bp):
TCACTTTTCCACTTTCAA
Found at i:32815514 original size:51 final size:49
Alignment explanation
Indices: 32815379--32815673 Score: 261
Period size: 51 Copynumber: 5.8 Consensus size: 49
32815369 ACTTTTATTA
* *
32815379 TTCGATACACGTAGTAGCTTTCACATAGTACTACACACGTGATCAAG-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGA-CAAGCTT
*
32815428 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGACAAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGAC--AAGCTT
* * * * *
32815480 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACAAGC-TT
** * *
32815530 TATCAATTCACGTAGTAGCCTTTACATAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGA-C-AAGCTT
* * * * * * *
32815582 CTT-GGTACACATTGTAGCCTTCACTTAATACTACACATGTGACCATCATT
1 -TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACAAGC-TT
* * * * *
32815632 TATCGATTCACGTAGTAGCCTTTACACAGTGCTACACACGTG
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
32815674 TTCATCGATA
Statistics
Matches: 195, Mismatches: 39, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
49 8 0.04
50 44 0.23
51 132 0.68
52 8 0.04
53 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (49 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACAAGCTT
Found at i:32815565 original size:102 final size:103
Alignment explanation
Indices: 32815379--32815673 Score: 416
Period size: 102 Copynumber: 2.9 Consensus size: 103
32815369 ACTTTTATTA
* * * * * * *** *
32815379 TTCGATACACGTAGTAGCTTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
*
32815443 TAGCCTTCACATAGTACTACACACGTGACAAAAGCTT-
66 TAGCCTTTACATAGTACTACACACGTGACAAAAGCTTC
*
32815480 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCAATTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
*
32815545 TAGCCTTTACATAGTACTACACACGTGACCAAAGCTTC
66 TAGCCTTTACATAGTACTACACACGTGACAAAAGCTTC
* *
32815583 TT-GGTACACATTGTAGCCTTCACTTAATACTACACATGTGACCATCATTTATCGATTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
* *
32815647 TAGCCTTTACACAGTGCTACACACGTG
66 TAGCCTTTACATAGTACTACACACGTG
32815674 TTCATCGATA
Statistics
Matches: 174, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
101 43 0.25
102 129 0.74
103 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (103 bp):
TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
TAGCCTTTACATAGTACTACACACGTGACAAAAGCTTC
Found at i:32815667 original size:153 final size:150
Alignment explanation
Indices: 32815386--32815669 Score: 331
Period size: 153 Copynumber: 1.9 Consensus size: 150
32815376 TTATTCGATA
* * *
32815386 CACGTAGTAGCTTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGTAGCCTTC
1 CACGTAGTAGCTTTCACATAGTACTACACACGTGACCAAGTTTTA-GGTACACATAGTAGCCTTC
* * **
32815451 ACATAGTACTACACACGTGACAAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTACTACAC
65 ACATAATACTACACACGTGACAAAA-CTTTTCGATACACATAGTAGCCTTCACACAGTACTACAC
32815516 ATGTGACCATCATTTATCAATT
129 ATGTGACCATCATTTATCAATT
*
32815538 CACGTAGTAGCCTTT-ACATAGTACTACACACGTGACCAAAGCTTCTT-GGTACACATTGTAGCC
1 CACGTAGTAG-CTTTCACATAGTACTACACACGTGACC-AAG-TT-TTAGGTACACATAGTAGCC
* * * * * * * *
32815601 TTCACTTAATACTACACATGTGAC-CATCATTTATCGATTCACGTAGTAGCCTTTACACAGTGCT
62 TTCACATAATACTACACACGTGACAAAAC-TTT-TCGATACACATAGTAGCCTTCACACAGTACT
32815665 ACACA
125 ACACA
32815670 CGTGTTCATC
Statistics
Matches: 110, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
151 1 0.01
152 35 0.32
153 70 0.64
154 2 0.02
155 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (150 bp):
CACGTAGTAGCTTTCACATAGTACTACACACGTGACCAAGTTTTAGGTACACATAGTAGCCTTCA
CATAATACTACACACGTGACAAAACTTTTCGATACACATAGTAGCCTTCACACAGTACTACACAT
GTGACCATCATTTATCAATT
Found at i:32817507 original size:18 final size:19
Alignment explanation
Indices: 32817474--32817510 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
32817464 ATCCCAAACT
32817474 CCCAAACCTCTTTACTTCC
1 CCCAAACCTCTTTACTTCC
32817493 CCCAAACCT-TTTACTTCC
1 CCCAAACCTCTTTACTTCC
32817511 TTCCACTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.22, C:0.46, G:0.00, T:0.32
Consensus pattern (19 bp):
CCCAAACCTCTTTACTTCC
Found at i:32817753 original size:32 final size:32
Alignment explanation
Indices: 32817712--32817809 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 32
32817702 CGGCCCATTT
32817712 TTATTTTAAAAATTTTAAAAAATTAAAAAAAA
1 TTATTTTAAAAATTTTAAAAAATTAAAAAAAA
*
32817744 TTATTTT-AAAA-TTAAAAAAATTAAAAAAAAA
1 TTATTTTAAAAATTTTAAAAAATT-AAAAAAAA
*
32817775 GTATTTTAAAAAAATTTT--AAAATTAAAAAAAA
1 TTATTTT--AAAAATTTTAAAAAATTAAAAAAAA
32817807 TTA
1 TTA
32817810 AAAAAAGTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
30 10 0.18
31 18 0.32
32 17 0.30
33 6 0.11
34 4 0.07
35 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (32 bp):
TTATTTTAAAAATTTTAAAAAATTAAAAAAAA
Found at i:32817754 original size:15 final size:14
Alignment explanation
Indices: 32817734--32817827 Score: 50
Period size: 14 Copynumber: 6.5 Consensus size: 14
32817724 TTTTAAAAAA
32817734 TTAAAAAAAATTATT
1 TTAAAAAAAA-TATT
* *
32817749 TTAAAATTAAAAAAAT
1 TTAAAA--AAAATATT
*
32817765 TAAAAAAAAAGTATT
1 TTAAAAAAAA-TATT
32817780 TT--AAAAAA-ATT
1 TTAAAAAAAATATT
* **
32817791 TTAAAATTAAAAAAAA
1 TTAAAA--AAAATATT
*
32817807 TTAAAAAAAGTATT
1 TTAAAAAAAATATT
32817821 TTAAAAA
1 TTAAAAA
32817828 TATTTTAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 17
0.67 0.14 0.19
Matches are distributed among these distances:
11 5 0.08
13 8 0.14
14 15 0.25
15 13 0.22
16 14 0.24
17 4 0.07
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (14 bp):
TTAAAAAAAATATT
Found at i:32817793 original size:42 final size:42
Alignment explanation
Indices: 32817739--32817887 Score: 198
Period size: 42 Copynumber: 3.5 Consensus size: 42
32817729 AAAAATTAAA
32817739 AAAAATTATTTTAAAATTAAAAAAATTAAAAAAAAAGTATTTT
1 AAAAA-TATTTTAAAATTAAAAAAATTAAAAAAAAAGTATTTT
*
32817782 AAAAAAATTTTAAAATTAAAAAAAATT--AAAAAAAGTATTTT
1 AAAAATATTTTAAAATT-AAAAAAATTAAAAAAAAAGTATTTT
* * *
32817823 AAAAATATTTTAAAATTAAAAAAA--AAATTTAAAAAGTATGTC
1 AAAAATATTTTAAAATTAAAAAAATTAAA--AAAAAAGTATTTT
32817865 AAAAATATTTTAAAATTAAAAAA
1 AAAAATATTTTAAAATTAAAAAA
32817888 TAAATATATT
Statistics
Matches: 96, Mismatches: 5, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
40 8 0.08
41 30 0.31
42 44 0.46
43 14 0.15
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (42 bp):
AAAAATATTTTAAAATTAAAAAAATTAAAAAAAAAGTATTTT
Found at i:32817803 original size:41 final size:39
Alignment explanation
Indices: 32817739--32817887 Score: 190
Period size: 41 Copynumber: 3.6 Consensus size: 39
32817729 AAAAATTAAA
32817739 AAAAATTATTTTAAAATTAAAAAAATTAAAAAAAAAGTATTTT
1 AAAAA-TATTTTAAAATT-AAAAAA--AAAAAAAAAGTATTTT
*
32817782 AAAAAAATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTT
1 AAAAATATTTTAAAATTAAAAAAAA--AAAAAAAGTATTTT
* *
32817823 AAAAATATTTTAAAATTAAAAAAAAAATTTAAAAAGTATGTC
1 AAAAATATTTTAAAATTAAAAAAAAAA---AAAAAGTATTTT
32817865 AAAAATATTTTAAAATTAAAAAA
1 AAAAATATTTTAAAATTAAAAAA
32817888 TAAATATATT
Statistics
Matches: 97, Mismatches: 4, Indels: 11
0.87 0.04 0.10
Matches are distributed among these distances:
39 4 0.04
41 44 0.45
42 44 0.45
43 5 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (39 bp):
AAAAATATTTTAAAATTAAAAAAAAAAAAAAAGTATTTT
Found at i:32817813 original size:17 final size:17
Alignment explanation
Indices: 32817780--32817813 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32817770 AAAAAGTATT
* *
32817780 TTAAAAAAATTTTAAAA
1 TTAAAAAAAATTAAAAA
32817797 TTAAAAAAAATTAAAAA
1 TTAAAAAAAATTAAAAA
32817814 AAGTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAAAAATTAAAAA
Found at i:32817892 original size:22 final size:21
Alignment explanation
Indices: 32817823--32817899 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
32817813 AAAGTATTTT
32817823 AAAAATATTTTAAAATTAAAA
1 AAAAATATTTTAAAATTAAAA
* * ***
32817844 AAAAA-ATTTAAAAAGTATGTC
1 AAAAATATTTTAAAATTA-AAA
32817865 AAAAATATTTTAAAATTAAAA
1 AAAAATATTTTAAAATTAAAA
32817886 AATAAATATATTTA
1 AA-AAATAT-TTTA
32817900 TTATATCGGG
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
20 10 0.24
21 12 0.29
22 16 0.38
23 4 0.10
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (21 bp):
AAAAATATTTTAAAATTAAAA
Found at i:32818131 original size:17 final size:17
Alignment explanation
Indices: 32818109--32818163 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
32818099 TCAAATATTT
32818109 TCCCTCCAAAATTTTAC
1 TCCCTCCAAAATTTTAC
*
32818126 TCCCTCC---ATTTATAT
1 TCCCTCCAAAATTT-TAC
*
32818141 TCCCCCCAAAATTTTAC
1 TCCCTCCAAAATTTTAC
*
32818158 TTCCTC
1 TCCCTC
32818164 AACCTCCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
14 4 0.14
15 8 0.28
17 13 0.45
18 4 0.14
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (17 bp):
TCCCTCCAAAATTTTAC
Found at i:32821476 original size:23 final size:23
Alignment explanation
Indices: 32821426--32821477 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
32821416 CGATTTTGTT
*
32821426 GAAGCCTTTGTGGCTGTTCTGTG
1 GAAGCCTTTGTGGCTGTTCTGAG
* * * *
32821449 AAAGCGTTTGTGGTTTTTCTGAG
1 GAAGCCTTTGTGGCTGTTCTGAG
32821472 GAAGCC
1 GAAGCC
32821478 CTTTTGGTTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (23 bp):
GAAGCCTTTGTGGCTGTTCTGAG
Found at i:32821541 original size:30 final size:30
Alignment explanation
Indices: 32821507--32821563 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
32821497 AGCCCTTGTG
* * *
32821507 GCGGGTACTTAGTAAATGTGAGCCTTTATA
1 GCGGGAACTTACTAAATGTGAGACTTTATA
*
32821537 GCGGGAACTTACTATATGTGAGACTTT
1 GCGGGAACTTACTAAATGTGAGACTTT
32821564 GTGGCTATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (30 bp):
GCGGGAACTTACTAAATGTGAGACTTTATA
Found at i:32822652 original size:8 final size:8
Alignment explanation
Indices: 32822639--32822664 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32822629 AAATGGTGAA
32822639 GTTGAAAG
1 GTTGAAAG
32822647 GTTGAAAG
1 GTTGAAAG
32822655 GTTGAAAG
1 GTTGAAAG
32822663 GT
1 GT
32822665 ATAGTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.27
Consensus pattern (8 bp):
GTTGAAAG
Found at i:32826537 original size:15 final size:15
Alignment explanation
Indices: 32826499--32826541 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
32826489 CCCTTCTTTT
*
32826499 TCATCACAAATCACA
1 TCATCACATATCACA
32826514 TCATCACATATCACA
1 TCATCACATATCACA
*
32826529 TCATTACATATCA
1 TCATCACATATCA
32826542 TACACAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (15 bp):
TCATCACATATCACA
Found at i:32838555 original size:41 final size:40
Alignment explanation
Indices: 32838464--32838696 Score: 189
Period size: 41 Copynumber: 5.6 Consensus size: 40
32838454 TCTTTGAATG
* * * * * **
32838464 TAAGGGGTTACTAAGTGCAGATTCTCTGAATCATTGACCAA
1 TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGA-TTA
* * * *
32838505 AAAGGGGTTGCGATGTGCTGATTCCCCGAATCATTGATTA
1 TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
*
32838545 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATT-
1 TAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* *
32838586 TGAAAGGGGTTGCTATGTGCTAATTCCCCGTATCATTGATTA
1 T--AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * * **
32838628 TAACGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACA
1 TAA-GGGGTTGCTAAGTGCTGATTCC-CC-GTAT-CATTGATTA
*
32838672 TAAGGTGGTTTCTAAGTGCTGATTC
1 TAAGG-GGTTGCTAAGTGCTGATTC
32838697 AACCGTGTAA
Statistics
Matches: 156, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
40 7 0.04
41 81 0.52
42 33 0.21
43 8 0.05
44 27 0.17
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (40 bp):
TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
Found at i:32838604 original size:83 final size:83
Alignment explanation
Indices: 32838505--32838657 Score: 270
Period size: 83 Copynumber: 1.8 Consensus size: 83
32838495 CATTGACCAA
* *
32838505 AAAGGGGTTGCGATGTGCTGATTCCCCGAATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
1 AAAGGGGTTGCGATGTGCTAATTCCCCGAATCATTGATTATAACGTGGTTGCTAAGTGCTGATTC
32838570 CACCGTATCCTTGATTTG
66 CACCGTATCCTTGATTTG
* *
32838588 AAAGGGGTTGCTATGTGCTAATTCCCCGTATCATTGATTATAACGTGGTTGCTAAGTGCTGATTC
1 AAAGGGGTTGCGATGTGCTAATTCCCCGAATCATTGATTATAACGTGGTTGCTAAGTGCTGATTC
32838653 CACCG
66 CACCG
32838658 GGATCCTTTG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (83 bp):
AAAGGGGTTGCGATGTGCTAATTCCCCGAATCATTGATTATAACGTGGTTGCTAAGTGCTGATTC
CACCGTATCCTTGATTTG
Found at i:32843123 original size:14 final size:14
Alignment explanation
Indices: 32843088--32843127 Score: 50
Period size: 12 Copynumber: 3.1 Consensus size: 14
32843078 AAGGATGTTT
*
32843088 TTTTATA-TATTCA
1 TTTTATATTATTTA
32843101 TTTT-T-TTATTTA
1 TTTTATATTATTTA
32843113 TTTTATATTATTTA
1 TTTTATATTATTTA
32843127 T
1 T
32843128 ATGCCATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
12 10 0.43
13 5 0.22
14 8 0.35
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTATATTATTTA
Found at i:32846398 original size:41 final size:40
Alignment explanation
Indices: 32846334--32846521 Score: 216
Period size: 41 Copynumber: 4.5 Consensus size: 40
32846324 TTTTTGAATG
* * *
32846334 TAAGGGGTTGCTAAATG-TAGATTCCCCGAATCATTGATCA
1 TAAGGGGTTGCTAAGTGCT-GATTCCCCGTATCATTGATTA
*
32846374 TAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTA
1 T-AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * *
32846415 TAAGGTGGTTGCTAACTGCTGATTCCACCGTATCCTTGATTG
1 TAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* * *
32846457 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCCTTAATTA
1 T--AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
32846499 TAAGGTGGTTGCTAAGTGCTGAT
1 TAAGG-GGTTGCTAAGTGCTGAT
32846522 CCCACCATGT
Statistics
Matches: 128, Mismatches: 13, Indels: 13
0.83 0.08 0.08
Matches are distributed among these distances:
40 9 0.07
41 68 0.53
42 29 0.23
43 18 0.14
44 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (40 bp):
TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
Found at i:32846473 original size:84 final size:83
Alignment explanation
Indices: 32846334--32846527 Score: 268
Period size: 84 Copynumber: 2.3 Consensus size: 83
32846324 TTTTTGAATG
32846334 TAAGG-GGTTGCTAAATG-TAGATTCC-CCGAATCATTGATCATAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAATGCT-GATTCCACCGAATCATTGATCATAAAGGGGTTGCTATGTGCTGA
*
32846396 TTCCCCGTATCATTGATTA
65 TTCCCCGTATCATTAATTA
* * * **
32846415 TAAGGTGGTTGCTAACTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAATGCTGATTCCACCGAATCATTGATCAT-AAAGGGGTTGCTATGTGCTGA
*
32846480 TTCCCCGTATCCTTAATTA
65 TTCCCCGTATCATTAATTA
* *
32846499 TAAGGTGGTTGCTAAGTGCTGATCCCACC
1 TAAGGTGGTTGCTAAATGCTGATTCCACC
32846528 ATGTAACGGT
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
81 5 0.05
82 17 0.17
83 13 0.13
84 65 0.65
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (83 bp):
TAAGGTGGTTGCTAAATGCTGATTCCACCGAATCATTGATCATAAAGGGGTTGCTATGTGCTGAT
TCCCCGTATCATTAATTA
Found at i:32851858 original size:23 final size:23
Alignment explanation
Indices: 32851828--32851873 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32851818 TACAAACATC
*
32851828 GATGCATAGCAAATATAGATTCA
1 GATGCATAGCAAATACAGATTCA
* *
32851851 GATGCATATCAATTACAGATTCA
1 GATGCATAGCAAATACAGATTCA
32851874 AATGTATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (23 bp):
GATGCATAGCAAATACAGATTCA
Found at i:32856683 original size:31 final size:31
Alignment explanation
Indices: 32856648--32856708 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
32856638 ATTAACTTAG
32856648 TAATTTCTTAAGGCGAAATACTAGGAAGCAA
1 TAATTTCTTAAGGCGAAATACTAGGAAGCAA
32856679 TAATTTCTTAAGGCGAAATACTAGGAAGCA
1 TAATTTCTTAAGGCGAAATACTAGGAAGCA
32856709 TGGAATTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (31 bp):
TAATTTCTTAAGGCGAAATACTAGGAAGCAA
Found at i:32857041 original size:29 final size:30
Alignment explanation
Indices: 32856993--32857054 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
32856983 ATGATCAAAA
*
32856993 AAAAGAAAAGAAAAAAGAGCATATGTATTC
1 AAAAGAAAAGAAAAAAGAGCATATGTACTC
* * *
32857023 AAAA-AAAAGTAAAAGGAGCATGTGTACTC
1 AAAAGAAAAGAAAAAAGAGCATATGTACTC
32857052 AAA
1 AAA
32857055 TACAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.58, C:0.08, G:0.18, T:0.16
Consensus pattern (30 bp):
AAAAGAAAAGAAAAAAGAGCATATGTACTC
Found at i:32870210 original size:15 final size:15
Alignment explanation
Indices: 32870190--32870236 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
32870180 CTAAGGGTTT
32870190 GCACATACAGAGTTC
1 GCACATACAGAGTTC
*
32870205 GCACAT--AGGGTTC
1 GCACATACAGAGTTC
* *
32870218 ACGCATACAGAGTTC
1 GCACATACAGAGTTC
32870233 GCAC
1 GCAC
32870237 CTAGGGGTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
13 10 0.42
15 14 0.58
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (15 bp):
GCACATACAGAGTTC
Found at i:32870215 original size:28 final size:28
Alignment explanation
Indices: 32870177--32870346 Score: 135
Period size: 28 Copynumber: 6.0 Consensus size: 28
32870167 GTAGGGCTCA
*
32870177 CACCTAAGGGTTTGCACATACAGAGTTCG
1 CACCT-AGGGTTCGCACATACAGAGTTCG
* * *
32870206 CACATAGGGTTCACGCATACAGAGTTCG
1 CACCTAGGGTTCGCACATACAGAGTTCG
* * *
32870234 CACCTAGGGGTTTGCACATCCAAAGTTCG
1 CACCTA-GGGTTCGCACATACAGAGTTCG
* * * * *
32870263 CACCTAGTGCTCGCACA-AGTAGGGTTTG
1 CACCTAGGGTTCGCACATA-CAGAGTTCG
* * * *
32870291 CATCTAGGGGTTCACACATATAGAGTTGG
1 CACCTA-GGGTTCGCACATACAGAGTTCG
* *
32870320 CACCTAGGGTTTGCACATATAGAGTTC
1 CACCTAGGGTTCGCACATACAGAGTTC
32870347 ACATAGATAA
Statistics
Matches: 109, Mismatches: 28, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
28 61 0.56
29 47 0.43
30 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (28 bp):
CACCTAGGGTTCGCACATACAGAGTTCG
Found at i:32871582 original size:2 final size:2
Alignment explanation
Indices: 32871575--32871610 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32871565 AAATGGGTTA
32871575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32871611 GGTTCCTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32871849 original size:8 final size:8
Alignment explanation
Indices: 32871814--32871849 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
32871804 AAAATAAAAA
32871814 AAAATTAT
1 AAAATTAT
*
32871822 AAATTTAT
1 AAAATTAT
*
32871830 AAATTTAT
1 AAAATTAT
32871838 AAAATTAT
1 AAAATTAT
32871846 AAAA
1 AAAA
32871850 ATTTATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
AAAATTAT
Found at i:32874123 original size:11 final size:11
Alignment explanation
Indices: 32874109--32874259 Score: 76
Period size: 11 Copynumber: 14.4 Consensus size: 11
32874099 AAAAATTAAA
32874109 AAAAATATTTT
1 AAAAATATTTT
32874120 AAAAATATTTT
1 AAAAATATTTT
*
32874131 --AAA-A-TTA
1 AAAAATATTTT
32874138 AAAAAGTATTTT
1 AAAAA-TATTTT
*
32874150 AAAAAAATTTT
1 AAAAATATTTT
*
32874161 AAAAAAATTTT
1 AAAAATATTTT
32874172 --AAA-A--TT
1 AAAAATATTTT
**
32874178 AAAAA-ATTAAAA
1 AAAAATATT--TT
32874190 AAAAAGTATTTT
1 AAAAA-TATTTT
32874202 AAAAATATTTT
1 AAAAATATTTT
**
32874213 --AAA-ATTAA
1 AAAAATATTTT
32874221 AAAAAGTATTTT
1 AAAAA-TATTTT
*
32874233 AAAAAAAATTTT
1 -AAAAATATTTT
*
32874245 AAAAAAATTTT
1 AAAAATATTTT
32874256 AAAA
1 AAAA
32874260 TTAAAAAATT
Statistics
Matches: 110, Mismatches: 12, Indels: 36
0.70 0.08 0.23
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 9 0.08
9 12 0.11
10 3 0.03
11 49 0.45
12 25 0.23
13 5 0.05
14 3 0.03
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:32874148 original size:30 final size:31
Alignment explanation
Indices: 32874100--32874164 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
32874090 AATTAAAATA
*
32874100 AAAATTAAAAAAAATATTTTAAAAATATTTT
1 AAAATTAAAAAAAATATTTTAAAAAAATTTT
*
32874131 AAAATT-AAAAAAGTATTTTAAAAAAATTTT
1 AAAATTAAAAAAAATATTTTAAAAAAATTTT
32874161 AAAA
1 AAAA
32874165 AAATTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 26 0.81
31 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (31 bp):
AAAATTAAAAAAAATATTTTAAAAAAATTTT
Found at i:32874171 original size:41 final size:42
Alignment explanation
Indices: 32874081--32874310 Score: 270
Period size: 43 Copynumber: 5.4 Consensus size: 42
32874071 ACCAAAAATT
** *
32874081 TATTTTAAAAATTAAAATAAAAATTAAAAAAAATATTTTAAAAA
1 TATTTT-AAAATTAAAA-AAGTATAAAAAAAAATATTTTAAAAA
***
32874125 TATTTTAAAATTAAAAAAGTATTTTAAAAAA-ATTTTAAAAA
1 TATTTTAAAATTAAAAAAGTATAAAAAAAAATATTTTAAAAA
*
32874166 AATTTTAAAATTAAAAAA-T-TAAAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAGTATAAAAAAAAA-TATTTTAAAAA
**
32874207 TATTTTAAAATTAAAAAAAGTATTTTAAAAAAA-ATTTTAAAAA
1 TATTTTAAAATT-AAAAAAGTA-TAAAAAAAAATATTTTAAAAA
* * *
32874250 AATTTTAAAATTAAAAAATTAAAAAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAGTATAAAAAAAAA-TATTTTAAAAA
32874293 TATTTTAAAATTAAAAAA
1 TATTTTAAAATTAAAAAA
32874311 TAAAAATATT
Statistics
Matches: 161, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
39 7 0.04
40 1 0.01
41 55 0.34
42 25 0.16
43 59 0.37
44 6 0.04
45 8 0.05
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (42 bp):
TATTTTAAAATTAAAAAAGTATAAAAAAAAATATTTTAAAAA
Found at i:32874223 original size:31 final size:32
Alignment explanation
Indices: 32874188--32874248 Score: 106
Period size: 31 Copynumber: 1.9 Consensus size: 32
32874178 AAAAAATTAA
*
32874188 AAAAAAAGTATTTT-AAAAATATTTTAAAATT
1 AAAAAAAGTATTTTAAAAAAAATTTTAAAATT
32874219 AAAAAAAGTATTTTAAAAAAAATTTTAAAA
1 AAAAAAAGTATTTTAAAAAAAATTTTAAAA
32874249 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (32 bp):
AAAAAAAGTATTTTAAAAAAAATTTTAAAATT
Found at i:32891211 original size:23 final size:23
Alignment explanation
Indices: 32891181--32891230 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
32891171 GGTTTCAATT
* *
32891181 GAACAACCTTTTTCGCTACCCTC
1 GAACAACCTTCTTCACTACCCTC
32891204 GAACAACCTTCTTCACTACCCTC
1 GAACAACCTTCTTCACTACCCTC
32891227 GAAC
1 GAAC
32891231 CACAAATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.40, G:0.08, T:0.26
Consensus pattern (23 bp):
GAACAACCTTCTTCACTACCCTC
Found at i:32891718 original size:12 final size:13
Alignment explanation
Indices: 32891677--32891718 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
32891667 TTTAATCAAC
*
32891677 TAATTTAATTAAT
1 TAATTTACTTAAT
*
32891690 TATATTTACTAAAT
1 TA-ATTTACTTAAT
32891704 TAATTT-CTTAAT
1 TAATTTACTTAAT
32891716 TAA
1 TAA
32891719 ATAATTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 8 0.32
13 6 0.24
14 11 0.44
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATTTACTTAAT
Found at i:32893660 original size:39 final size:39
Alignment explanation
Indices: 32893617--32893706 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
32893607 TATAATAGAT
*
32893617 TATAACAAGATCTAGA-ATTTGTTGTAGATCCTCAAGTAA
1 TATAACAAGATCT-GACATTTGTTGCAGATCCTCAAGTAA
* *
32893656 TATAACGAGATCTGACATTTGTTGCAGATCCTCAGGTAA
1 TATAACAAGATCTGACATTTGTTGCAGATCCTCAAGTAA
32893695 TATAACAAGATC
1 TATAACAAGATC
32893707 CAACACTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.04
39 44 0.96
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (39 bp):
TATAACAAGATCTGACATTTGTTGCAGATCCTCAAGTAA
Found at i:32894236 original size:15 final size:15
Alignment explanation
Indices: 32894221--32894249 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32894211 AATTAATTTA
32894221 AAATT-TGTTTAATT
1 AAATTGTGTTTAATT
32894235 AAATTGTGTTTAATT
1 AAATTGTGTTTAATT
32894250 GTTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
AAATTGTGTTTAATT
Found at i:32907136 original size:20 final size:20
Alignment explanation
Indices: 32907111--32907156 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
32907101 ACGTAAGTAT
32907111 GGTTTT-AGGTTAGAAAATAG
1 GGTTTTAAGGTTA-AAAATAG
32907131 GGTTTTAAAAGGTTAAAAATAG
1 GGTTTT--AAGGTTAAAAATAG
32907153 GGTT
1 GGTT
32907157 AAACAAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.26
22 11 0.48
23 6 0.26
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (20 bp):
GGTTTTAAGGTTAAAAATAG
Found at i:32907164 original size:23 final size:23
Alignment explanation
Indices: 32907117--32907164 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
32907107 GTATGGTTTT
**
32907117 AGGTTAGAAAATAGGGTTTTAAA
1 AGGTTAGAAAATAGGGTTAAAAA
32907140 AGGTTA-AAAATAGGGTTAAACAA
1 AGGTTAGAAAATAGGGTTAAA-AA
32907163 AG
1 AG
32907165 ATTATTCTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (23 bp):
AGGTTAGAAAATAGGGTTAAAAA
Found at i:32925455 original size:22 final size:22
Alignment explanation
Indices: 32925429--32925473 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32925419 ATTATATGTA
32925429 TTAATTCATAACATAA-TTAATT
1 TTAATTCATAAC-TAATTTAATT
* *
32925451 TTAATTTATATCTAATTTAATT
1 TTAATTCATAACTAATTTAATT
32925473 T
1 T
32925474 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCATAACTAATTTAATT
Found at i:32928319 original size:13 final size:13
Alignment explanation
Indices: 32928301--32928330 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32928291 AAGAAAAAGG
32928301 CATTCATCTTCTA
1 CATTCATCTTCTA
*
32928314 CATTCATCTTCTT
1 CATTCATCTTCTA
32928327 CATT
1 CATT
32928331 TATGAAGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (13 bp):
CATTCATCTTCTA
Done.