Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 124 of 211
Found at i:35934020 original size:16 final size:16
Alignment explanation
Indices: 35933994--35934034 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
35933984 TTTCGTGTGT
35933994 TTTTTTCTGTTTTTTTA-
1 TTTTTT-TG-TTTTTTAC
35934011 TTTTTTTGTTTTTTAC
1 TTTTTTTGTTTTTTAC
35934027 TTTTTTTG
1 TTTTTTTG
35934035 ATATATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.30
16 10 0.43
17 6 0.26
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.83
Consensus pattern (16 bp):
TTTTTTTGTTTTTTAC
Found at i:35934043 original size:26 final size:26
Alignment explanation
Indices: 35933991--35934044 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
35933981 AAATTTCGTG
* * *
35933991 TGTTTTTTTCTGTTTTTTTATTTTTT
1 TGTTTTTTACTGTTTTTTGATTATTT
35934017 TGTTTTTTACT-TTTTTTGATATATTT
1 TGTTTTTTACTGTTTTTTGAT-TATTT
35934043 TG
1 TG
35934045 GTAAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.09, C:0.04, G:0.09, T:0.78
Consensus pattern (26 bp):
TGTTTTTTACTGTTTTTTGATTATTT
Found at i:35934065 original size:27 final size:29
Alignment explanation
Indices: 35934035--35934103 Score: 117
Period size: 28 Copynumber: 2.5 Consensus size: 29
35934025 ACTTTTTTTG
35934035 ATATATTTTGGTAAAT-AAAAAAA-TTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
35934062 ATATATTTTGGTAAATAAAAAAAAGTTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
35934091 A-ATATTTTGGTAA
1 ATATATTTTGGTAA
35934104 TTTTTTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 16 0.40
28 19 0.47
29 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (29 bp):
ATATATTTTGGTAAATAAAAAAAAGTTAT
Found at i:35934164 original size:19 final size:18
Alignment explanation
Indices: 35934140--35934181 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
35934130 TATAAAACCC
35934140 ATAATAAAACATTACAAAA
1 ATAATAAAACATTA-AAAA
35934159 ATAATAAAACATTAAAAA
1 ATAATAAAACATTAAAAA
35934177 A-AATA
1 ATAATA
35934182 CCAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (18 bp):
ATAATAAAACATTAAAAA
Found at i:35934187 original size:20 final size:20
Alignment explanation
Indices: 35934140--35934192 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
35934130 TATAAAACCC
* *
35934140 ATAATAAAACATT-ACAAAA
1 ATAACAAAACATTAAAAAAA
*
35934159 ATAATAAAACATTAAAAAAA
1 ATAACAAAACATTAAAAAAA
* *
35934179 ATACCAAAATATTA
1 ATAACAAAACATTA
35934193 TATATATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (20 bp):
ATAACAAAACATTAAAAAAA
Found at i:35934905 original size:10 final size:10
Alignment explanation
Indices: 35934892--35935042 Score: 59
Period size: 10 Copynumber: 15.1 Consensus size: 10
35934882 TCCTTCCCTC
35934892 TTCTTCTTCT
1 TTCTTCTTCT
* *
35934902 TTCTTTTTTTT
1 TTC-TTCTTCT
*
35934913 TCTCTTCTCCT
1 T-TCTTCTTCT
35934924 TTCCTT-TTCT
1 TT-CTTCTTCT
*
35934934 TTCATTATT-T
1 TTC-TTCTTCT
35934944 TTC-T-TTCT
1 TTCTTCTTCT
* **
35934952 TTCCTCCCCT
1 TTCTTCTTCT
35934962 TTCCTT-TTCT
1 TT-CTTCTTCT
35934972 TTC--CTTCT
1 TTCTTCTTCT
35934980 TT-TTCTTTCT
1 TTCTTC-TTCT
* *
35934990 TTCCTCTCCT
1 TTCTTCTTCT
*
35935000 TTCCTT-TTCC
1 TT-CTTCTTCT
*
35935010 TTCTTTTTCT
1 TTCTTCTTCT
35935020 TTCTTCCTTTCT
1 TTCTT-C-TTCT
35935032 TTCTTCTTCT
1 TTCTTCTTCT
35935042 T
1 T
35935043 CCCCTCTCCT
Statistics
Matches: 105, Mismatches: 18, Indels: 36
0.66 0.11 0.23
Matches are distributed among these distances:
7 2 0.02
8 11 0.10
9 7 0.07
10 51 0.49
11 23 0.22
12 11 0.10
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (10 bp):
TTCTTCTTCT
Found at i:35934925 original size:22 final size:22
Alignment explanation
Indices: 35934893--35934936 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
35934883 CCTTCCCTCT
* * *
35934893 TCTTCTTCTTTCTTTTTTTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
35934915 TCTTCTCCTTTCCTTTTCTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
35934937 ATTATTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
TCTTCTCCTTTCCTTTTCTTTC
Found at i:35934928 original size:5 final size:5
Alignment explanation
Indices: 35934920--35935011 Score: 50
Period size: 5 Copynumber: 19.0 Consensus size: 5
35934910 TTTTCTCTTC
* * * * *
35934920 TCCTT TCCTT TTCTT TCATT AT--TT TTCTT T-CTT TCCTC CCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT -TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* * * *
35934968 TTCTT TCC-T TCTTT TTCTT T-CTT TCCTC TCCTT TCCTTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCC-TT TCCTT
35935012 CTTTTTCTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
3 1 0.02
4 13 0.20
5 46 0.70
6 6 0.09
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (5 bp):
TCCTT
Found at i:35934963 original size:38 final size:37
Alignment explanation
Indices: 35934921--35935030 Score: 148
Period size: 38 Copynumber: 2.9 Consensus size: 37
35934911 TTTCTCTTCT
35934921 CCTTTCCTTTTCTTTCATTATTTTTCTTTCTTTCCTCC
1 CCTTTCCTTTTCTTTC-TTATTTTTCTTTCTTTCCTCC
* *
35934959 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCT
1 CCTTTCCTTTTCTTT-CTTATTTTTCTTTCTTTCCTCC
* * *
35934997 CCTTTCCTTTTCCTTCTTTTTCTTTCTTCCTTTC
1 CCTTTCCTTTTCTTTCTTATT-TTTCTTTCTTTC
35935031 TTTCTTCTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 5 0.08
38 59 0.91
39 1 0.02
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.65
Consensus pattern (37 bp):
CCTTTCCTTTTCTTTCTTATTTTTCTTTCTTTCCTCC
Found at i:35934983 original size:14 final size:14
Alignment explanation
Indices: 35934966--35935039 Score: 55
Period size: 14 Copynumber: 5.1 Consensus size: 14
35934956 TCCCCTTTCC
35934966 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
*
35934980 TTTTCTTTCTTTCCT
1 TTTTCTTTCCTT-CT
35934995 CTCCTTTCCTTTTCCTTCT
1 -T--TTT-C-TTTCCTTCT
35935014 TTTTCTTT-CTTC-
1 TTTTCTTTCCTTCT
*
35935026 CTTTCTTT-CTTCT
1 TTTTCTTTCCTTCT
35935039 T
1 T
35935040 CTTCCCCTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
12 11 0.22
13 4 0.08
14 14 0.29
15 3 0.06
16 4 0.08
18 4 0.08
19 3 0.06
20 6 0.12
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:35934991 original size:28 final size:28
Alignment explanation
Indices: 35934960--35935039 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
35934950 CTTTCCTCCC
35934960 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
35934988 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTTT
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTT
35935022 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
35935040 CTTCCCCTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.15
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 18 0.39
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTT
Found at i:35935035 original size:22 final size:23
Alignment explanation
Indices: 35935000--35935042 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
35934990 TTCCTCTCCT
*
35935000 TTCCTTTTCCTTCTTTTTCTTTC
1 TTCCTTTTCCTTCTTCTTCTTTC
*
35935023 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
35935043 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTTC
Found at i:35935040 original size:28 final size:30
Alignment explanation
Indices: 35934962--35935043 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 30
35934952 TTCCTCCCCT
*
35934962 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
*
35934994 TCTCCTTTCCTTT-TCCTTCTT-TTTCTTT-C
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTTTCC
35935023 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
35935044 CCCTCTCCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
27 4 0.09
28 13 0.30
29 2 0.05
30 7 0.16
31 6 0.14
32 4 0.09
33 7 0.16
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:35935053 original size:42 final size:40
Alignment explanation
Indices: 35934941--35935056 Score: 105
Period size: 42 Copynumber: 2.9 Consensus size: 40
35934931 TCTTTCATTA
* *
35934941 TTTTTCTTTCTTTCCTCCCCTT-TCCT-T--TTCTTTCCTTC
1 TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTT--TTC
* * *
35934979 TTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTTTC
1 TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTC
* *
35935019 TTTCTTCCTTTCTTTCTTCTTCTTCCCCTCTCCTTCTT
1 TTT-TT-CTTTCTTTCCTCTCCTTCCCCTCTCCTTCTT
35935057 CCCCCCACCA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
38 21 0.33
39 2 0.03
40 7 0.11
41 2 0.03
42 32 0.50
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (40 bp):
TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTC
Found at i:35935185 original size:8 final size:8
Alignment explanation
Indices: 35935171--35935209 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
35935161 TTAGTCCAGG
35935171 TTTTTTT-
1 TTTTTTTA
35935178 TGTTTTTTA
1 T-TTTTTTA
35935187 TTTTTTTA
1 TTTTTTTA
*
35935195 TTTTTTTG
1 TTTTTTTA
35935203 TTTTTTT
1 TTTTTTT
35935210 TGATATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 1 0.03
8 27 0.93
9 1 0.03
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:35937158 original size:36 final size:35
Alignment explanation
Indices: 35937111--35937187 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
35937101 GACACCCTGC
* * *
35937111 GACACTGTGTAAACGTTAATATAGGTCTTTTGAGGT
1 GACACCGTGTAAACGAT-AGATAGGTCTTTTGAGGT
*
35937147 GACACCGTGTAAAGGATAGATAGGTCTTTTGAGGT
1 GACACCGTGTAAACGATAGATAGGTCTTTTGAGGT
35937182 GACACC
1 GACACC
35937188 TCGGAAGGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 23 0.62
36 14 0.38
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (35 bp):
GACACCGTGTAAACGATAGATAGGTCTTTTGAGGT
Found at i:35942087 original size:25 final size:21
Alignment explanation
Indices: 35942031--35942087 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 21
35942021 GTAACGAAAG
35942031 AATGAGAGAAAAGAAAATTGA
1 AATGAGAGAAAAGAAAATTGA
* *
35942052 AA-GAAAAAAAAGACAAGAGTTGA
1 AATGAGAGAAAAGA-AA-A-TTGA
35942075 TAATGAGAGAAAA
1 -AATGAGAGAAAA
35942088 TGAGCGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
20 9 0.33
21 4 0.15
22 1 0.04
23 4 0.15
24 2 0.07
25 7 0.26
ACGTcount: A:0.63, C:0.02, G:0.23, T:0.12
Consensus pattern (21 bp):
AATGAGAGAAAAGAAAATTGA
Found at i:35942131 original size:19 final size:19
Alignment explanation
Indices: 35942085--35942143 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
35942075 TAATGAGAGA
*
35942085 AAATGAGCGAAAAATAAAAG
1 AAATGAGAGAAAAA-AAAAG
35942105 AAATTGAGAGAAAAAAAAAG
1 AAA-TGAGAGAAAAAAAAAG
*
35942125 AAATGAGAGAAAAAGAAAG
1 AAATGAGAGAAAAAAAAAG
35942144 CTTGAAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 15 0.42
20 11 0.31
21 10 0.28
ACGTcount: A:0.68, C:0.02, G:0.22, T:0.08
Consensus pattern (19 bp):
AAATGAGAGAAAAAAAAAG
Found at i:35956574 original size:51 final size:51
Alignment explanation
Indices: 35956494--35956727 Score: 258
Period size: 51 Copynumber: 4.6 Consensus size: 51
35956484 AGTTGCTAGA
*
35956494 TCACGTGTGTAGTACTATGTGCAGGCTACTACACGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGGATGAAAATGG
* * *
35956545 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGAATG-ATA-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGG-ATGAAAATGG
* * * * * *** *
35956595 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAAT-AGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGGATGAAAAT-GG
* * * **
35956646 TCATGTGTATAGTACTATATGCAGGCTACTACGTATATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGGATGAAAATGG
*
35956697 TCACTTGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
35956728 TGTGAACCGG
Statistics
Matches: 145, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
49 2 0.01
50 36 0.25
51 102 0.70
52 5 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGGATGAAAATGG
Found at i:35956675 original size:101 final size:102
Alignment explanation
Indices: 35956494--35956729 Score: 280
Period size: 101 Copynumber: 2.3 Consensus size: 102
35956484 AGTTGCTAGA
* ** * * * *
35956494 TCACGTGTGTAGTACTATGTGCAGGCTACTACACGTATCGGATGAAAATGGTCACGTGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGAAAATGATCACGTGTATAGTA
* * *
35956559 CTATGTGCAGACTACTACGTGTATCGGAATG-ATA-GG
66 CTATATGCAGACTACTACGTATATCGG-ATGAAAATGG
* *** *
35956595 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAAT-AGCTTCGATCATGTGTATAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGAAAAT-GATCACGTGTATAGT
*
35956659 ACTATATGCAGGCTACTACGTATATCGGATGAAAATGG
65 ACTATATGCAGACTACTACGTATATCGGATGAAAATGG
*
35956697 TCACTTGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
35956730 TGAACCGGGT
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
100 5 0.04
101 76 0.67
102 33 0.29
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGAAAATGATCACGTGTATAGTA
CTATATGCAGACTACTACGTATATCGGATGAAAATGG
Found at i:35964305 original size:26 final size:27
Alignment explanation
Indices: 35964254--35964326 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
35964244 TCCATCACTT
* *
35964254 GCCATAAAGGCTTTCC-TTTCCTTAGATC
1 GCCACAAAGGC-TTCCATTT-CATAGATC
* *
35964282 GCGAC-AAGGCTTCCATTTCATAGATT
1 GCCACAAAGGCTTCCATTTCATAGATC
35964308 GCCACAAAGGCTTCCATTT
1 GCCACAAAGGCTTCCATTT
35964327 TCTTGGCGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
26 14 0.37
27 21 0.55
28 3 0.08
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (27 bp):
GCCACAAAGGCTTCCATTTCATAGATC
Found at i:35967664 original size:22 final size:22
Alignment explanation
Indices: 35967585--35967670 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 22
35967575 TGTTGAACGA
* * * *
35967585 TAGGCACCAAAGTGTAAATCTG
1 TAGGCATCGAAGTGCAAATCAG
*
35967607 TAGGCACCGAAGTGCAGAA-CAG
1 TAGGCATCGAAGTGCA-AATCAG
*
35967629 TAGGCATAGAAGTGCAAATCAG
1 TAGGCATCGAAGTGCAAATCAG
* *
35967651 TAGGCATCGTAGTGAAAATC
1 TAGGCATCGAAGTGCAAATC
35967671 CCATACAAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
21 2 0.04
22 50 0.93
23 2 0.04
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (22 bp):
TAGGCATCGAAGTGCAAATCAG
Found at i:35984616 original size:15 final size:16
Alignment explanation
Indices: 35984588--35984617 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
35984578 TTGCATTCTT
35984588 AGGATAATTTGCATTA
1 AGGATAATTTGCATTA
35984604 AGGATAA-TTGCATT
1 AGGATAATTTGCATT
35984618 TATTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (16 bp):
AGGATAATTTGCATTA
Found at i:35985860 original size:45 final size:45
Alignment explanation
Indices: 35985796--35985886 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
35985786 TATTGGACAA
35985796 GGGATTTATTCAACCAAGTGTTTCACCTTGGGGTGCACCAACCTT
1 GGGATTTATTCAACCAAGTGTTTCACCTTGGGGTGCACCAACCTT
35985841 GGGATTTATTCAACCAAGTGTTTCACCTTGGGGTGCACCAACCTT
1 GGGATTTATTCAACCAAGTGTTTCACCTTGGGGTGCACCAACCTT
35985886 G
1 G
35985887 TTTGTAAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (45 bp):
GGGATTTATTCAACCAAGTGTTTCACCTTGGGGTGCACCAACCTT
Found at i:35990535 original size:20 final size:21
Alignment explanation
Indices: 35990510--35990559 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
35990500 ACGCAATGTG
35990510 TGTGTTGCA-ACAC-ATAGCCT
1 TGTGTTG-AGACACAATAGCCT
*
35990530 TGTGTTGAGCCACAATAGCCT
1 TGTGTTGAGACACAATAGCCT
35990551 TGTGTTGAG
1 TGTGTTGAG
35990560 CCATAAGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 10 0.37
21 16 0.59
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (21 bp):
TGTGTTGAGACACAATAGCCT
Found at i:35990571 original size:19 final size:21
Alignment explanation
Indices: 35990523--35990562 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
35990513 GTTGCAACAC
35990523 ATAGCCTTGTGTTGAGCCACA
1 ATAGCCTTGTGTTGAGCCACA
35990544 ATAGCCTTGTGTTGAGCCA
1 ATAGCCTTGTGTTGAGCCA
35990563 TAAGCCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (21 bp):
ATAGCCTTGTGTTGAGCCACA
Found at i:35993452 original size:21 final size:21
Alignment explanation
Indices: 35993421--35993474 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
35993411 TGAAAGAGGC
35993421 ACACAC-T-CGTGTACAAGAA
1 ACACACGTCCGTGTACAAGAA
**
35993440 ACACACGTCCGTGTGGAAGAA
1 ACACACGTCCGTGTACAAGAA
* *
35993461 GCACACGACCGTGT
1 ACACACGTCCGTGT
35993475 GGAGGAGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 6 0.21
20 1 0.03
21 22 0.76
ACGTcount: A:0.33, C:0.28, G:0.24, T:0.15
Consensus pattern (21 bp):
ACACACGTCCGTGTACAAGAA
Found at i:35993475 original size:21 final size:21
Alignment explanation
Indices: 35993435--35993496 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
35993425 ACTCGTGTAC
*
35993435 AAGAAACACACGTCCGTGTGG
1 AAGAAACACACGACCGTGTGG
*
35993456 AAGAAGCACACGACCGTGTGG
1 AAGAAACACACGACCGTGTGG
* *
35993477 AGGAGACACAC-ACCCGTGTG
1 AAGAAACACACGA-CCGTGTG
35993497 TTTGAGTTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.32, C:0.26, G:0.31, T:0.11
Consensus pattern (21 bp):
AAGAAACACACGACCGTGTGG
Found at i:35998479 original size:27 final size:27
Alignment explanation
Indices: 35998449--35998626 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35998439 ATATTGAGTC
* * * *
35998449 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35998476 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35998503 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35998531 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35998558 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35998585 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35998612 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35998627 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35998588 original size:82 final size:81
Alignment explanation
Indices: 35998470--35998625 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35998460 TGCTATATAA
* *
35998470 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35998535 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35998552 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35998616 CACTTAGTGC
65 CACTTAGTGC
35998626 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36006446 original size:27 final size:27
Alignment explanation
Indices: 36006415--36006592 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36006405 TATATTGATC
* * * *
36006415 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36006442 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36006469 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36006497 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36006524 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36006551 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36006578 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36006593 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36006554 original size:82 final size:81
Alignment explanation
Indices: 36006436--36006591 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36006426 TGCTATATAA
* *
36006436 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36006501 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36006518 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36006582 CACTTAGTGC
65 CACTTAGTGC
36006592 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36071415 original size:39 final size:40
Alignment explanation
Indices: 36071274--36071460 Score: 284
Period size: 39 Copynumber: 4.9 Consensus size: 40
36071264 ATTCGGATTG
*
36071274 ATAACCGGGCTAAG-CCCGAAGGCATTT-TGCTAG-TACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36071311 A-ATCCGGGCTAAG-CCCGAA-GCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36071348 AT-ACC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36071386 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36071425 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36071461 AGCTATATCG
Statistics
Matches: 138, Mismatches: 4, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
35 6 0.04
36 29 0.21
37 14 0.10
38 20 0.14
39 42 0.30
40 27 0.20
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36079389 original size:40 final size:40
Alignment explanation
Indices: 36079280--36079467 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
36079270 ATTCGGATTG
* *
36079280 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36079320 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGACTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36079359 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36079399 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36079439 ATAACCGGGCTAAGTCCCAAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
36079468 AGCTAGTAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 35 0.25
40 103 0.75
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36081255 original size:19 final size:17
Alignment explanation
Indices: 36081197--36081257 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 17
36081187 GAAAGATAAA
* *
36081197 TTTTTAT-TTTTTTTAT
1 TTTTTATATATTTATAT
*
36081213 TTTTT-TGTA-TTATAT
1 TTTTTATATATTTATAT
36081228 TTTTTATATATTTATAT
1 TTTTTATATATTTATAT
36081245 GTTTTTGATATAT
1 -TTTTT-ATATAT
36081258 ATATGTGGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 11 0.30
16 9 0.24
17 6 0.16
18 5 0.14
19 6 0.16
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTTTATATATTTATAT
Found at i:36081259 original size:32 final size:31
Alignment explanation
Indices: 36081197--36081261 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
36081187 GAAAGATAAA
* * *
36081197 TTTTTATTTTTTTTATTTTTTTGTATTATAT
1 TTTTTATTATTTATATGTTTTTGTATTATAT
36081228 TTTTTATATATTTATATGTTTTTGATATATATAT
1 TTTTTAT-TATTTATATGTTTTTG-TAT-TATAT
36081262 GTGGAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 7 0.25
32 13 0.46
33 3 0.11
34 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (31 bp):
TTTTTATTATTTATATGTTTTTGTATTATAT
Found at i:36081260 original size:17 final size:17
Alignment explanation
Indices: 36081214--36081263 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
36081204 TTTTTTTATT
36081214 TTTTTG-TAT-TATAT-
1 TTTTTGATATATATATG
36081228 TTTTT-ATATATTTATATG
1 TTTTTGATATA--TATATG
36081246 TTTTTGATATATATATG
1 TTTTTGATATATATATG
36081263 T
1 T
36081264 GGAAAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 8 0.27
17 12 0.40
18 5 0.17
19 5 0.17
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (17 bp):
TTTTTGATATATATATG
Found at i:36084712 original size:51 final size:50
Alignment explanation
Indices: 36084616--36084713 Score: 117
Period size: 51 Copynumber: 1.9 Consensus size: 50
36084606 GCCTTATATC
* * * *
36084616 TCAGTTAAATTTGAGAGATAATCTCTCAGTTGAACTCTGTTTTATTTGTT
1 TCAGTTAAATTTGAGAGATAATCTCCCAGTTAAACTATGTATTATTTGTT
* *
36084666 TCAGTTGAACTTTGAGAGCTAATCTCCCAGTTAAACTATAG-ATTATTT
1 TCAGTT-AAATTTGAGAGATAATCTCCCAGTTAAACTAT-GTATTATTT
36084714 TACAACCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
50 6 0.15
51 33 0.82
52 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (50 bp):
TCAGTTAAATTTGAGAGATAATCTCCCAGTTAAACTATGTATTATTTGTT
Found at i:36087626 original size:21 final size:21
Alignment explanation
Indices: 36087603--36087643 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36087593 AAATACATAA
36087603 AAAAGCTTA-AAAAAATTATT
1 AAAAGCTTATAAAAAATTATT
**
36087623 AAAATTTTATAAAAAATTATT
1 AAAAGCTTATAAAAAATTATT
36087644 TCTCATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAGCTTATAAAAAATTATT
Found at i:36087846 original size:11 final size:11
Alignment explanation
Indices: 36087832--36087874 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
36087822 TTATTTTTTA
36087832 TAATTTTTAAT
1 TAATTTTTAAT
*
36087843 TAATTTCTAAT
1 TAATTTTTAAT
*
36087854 AAATTTTATAGAT
1 TAATTTT-TA-AT
36087867 TAATTTTT
1 TAATTTTT
36087875 TCTATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 15 0.58
12 3 0.12
13 8 0.31
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (11 bp):
TAATTTTTAAT
Found at i:36088117 original size:32 final size:32
Alignment explanation
Indices: 36088081--36088152 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
36088071 TTTGATGTTG
36088081 TGGCATTGCCACGTAAGCAATCAATGATGACA
1 TGGCATTGCCACGTAAGCAATCAATGATGACA
* * * **
36088113 TGGCATTACCATGTCAGCCTTCAATGATGACA
1 TGGCATTGCCACGTAAGCAATCAATGATGACA
*
36088145 TGGAATTG
1 TGGCATTG
36088153 TCATGTCAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (32 bp):
TGGCATTGCCACGTAAGCAATCAATGATGACA
Found at i:36088158 original size:32 final size:32
Alignment explanation
Indices: 36088101--36088161 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
36088091 ACGTAAGCAA
*
36088101 TCAATGATGACATGGCATTACCATGTCAGCCT
1 TCAATGATGACATGGAATTACCATGTCAGCCT
**
36088133 TCAATGATGACATGGAATTGTCATGTCAG
1 TCAATGATGACATGGAATTACCATGTCAG
36088162 TAGTTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (32 bp):
TCAATGATGACATGGAATTACCATGTCAGCCT
Found at i:36092471 original size:40 final size:40
Alignment explanation
Indices: 36092319--36092464 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
36092309 TTGAATGATG
* * * *
36092319 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36092359 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36092399 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36092440 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36092465 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36092471 original size:80 final size:80
Alignment explanation
Indices: 36092319--36092497 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
36092309 TTGAATGATG
* *
36092319 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
36092384 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * ** * *
36092399 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
36092462 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
36092479 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36092498 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 59 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:36100363 original size:79 final size:81
Alignment explanation
Indices: 36100227--36100411 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36100217 TTGAATGATG
* *
36100227 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36100291 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36100306 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36100368 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36100386 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36100412 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36100425 original size:40 final size:40
Alignment explanation
Indices: 36100228--36100411 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36100218 TGAATGATGT
* * * *
36100228 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36100268 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36100308 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36100346 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36100387 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36100412 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36100433 original size:79 final size:79
Alignment explanation
Indices: 36100280--36100444 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36100270 GGACTAAGAT
* * **
36100280 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36100345 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36100359 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36100422 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36100438 CCGAAGG
1 CCGAAGG
36100445 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36106739 original size:7 final size:7
Alignment explanation
Indices: 36106724--36106753 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
36106714 CATCTTCCAC
36106724 AAAAA-A
1 AAAAAGA
36106730 AAAAAGA
1 AAAAAGA
36106737 AAAAAGA
1 AAAAAGA
36106744 AAAAAGA
1 AAAAAGA
36106751 AAA
1 AAA
36106754 CCTAGCCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:36112331 original size:39 final size:39
Alignment explanation
Indices: 36112273--36112349 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
36112263 AATACTTAAA
* *
36112273 ACTACTCAAAATCATTCCCCAACTCATAAATAAAAAAAC
1 ACTACTCAAAATCACTCCCCAACTCAAAAATAAAAAAAC
* *
36112312 ACTACTCAAAGTCCCTCCCCAACTCAAAAATAAAAAAA
1 ACTACTCAAAATCACTCCCCAACTCAAAAATAAAAAAA
36112350 TAATACTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.51, C:0.30, G:0.01, T:0.18
Consensus pattern (39 bp):
ACTACTCAAAATCACTCCCCAACTCAAAAATAAAAAAAC
Found at i:36113398 original size:34 final size:32
Alignment explanation
Indices: 36113328--36113391 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
36113318 ATGGCTAAAG
36113328 TAAAAGAAAAAAAGAATTAAAAAGATGTAGGA
1 TAAAAGAAAAAAAGAATTAAAAAGATGTAGGA
36113360 TAAAAGAAAAAAAGAATTAAAAAGATGTAGGA
1 TAAAAGAAAAAAAGAATTAAAAAGATGTAGGA
36113392 GATAAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.16
Consensus pattern (32 bp):
TAAAAGAAAAAAAGAATTAAAAAGATGTAGGA
Found at i:36117405 original size:23 final size:23
Alignment explanation
Indices: 36117373--36117417 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36117363 TATAATGTAT
*
36117373 TATTTGAATTGA-AATGGTATAA
1 TATTTGAATTGACAATAGTATAA
36117395 TATTATGAATTGACAATAGTATA
1 TATT-TGAATTGACAATAGTATA
36117418 TGAAATGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (23 bp):
TATTTGAATTGACAATAGTATAA
Found at i:36119304 original size:27 final size:27
Alignment explanation
Indices: 36119274--36119450 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
36119264 ATATTGAGCC
* * *
36119274 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
**
36119301 CGCACACTTAGTGC-ACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
36119327 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
36119355 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
36119382 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
36119409 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
36119436 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36119451 GTACAATTTA
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.18
27 78 0.63
28 23 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:36119366 original size:54 final size:54
Alignment explanation
Indices: 36119274--36119450 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 54
36119264 ATATTGAGCC
* *
36119274 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCACGTAGTCAAAT
* *
36119327 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGC-CGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCACG--TAGTCAAAT
** * *
36119382 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGC-ACGTAGTCAAAT
36119436 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36119451 GTACAATTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
51 2 0.02
52 1 0.01
53 18 0.17
54 56 0.54
55 25 0.24
56 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCACGTAGTCAAAT
Found at i:36119439 original size:81 final size:81
Alignment explanation
Indices: 36119295--36119449 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
36119285 TGCTATACAA
* * *
36119295 TCAACTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCAC
1 TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCAC
36119360 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * ** *
36119376 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAG-TCGAATCGCA
1 TCAACTCGCACACTTAGTGCA-CATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCA
36119440 CACTTAGTGC
65 CACTTAGTGC
36119450 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 38 0.58
82 27 0.42
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36120590 original size:22 final size:24
Alignment explanation
Indices: 36120543--36120590 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
36120533 GAATAGACCT
36120543 AGAATCTAGACTCATGCACCCCAA
1 AGAATCTAGACTCATGCACCCCAA
36120567 AGAATCTAGACTCAT-CA-CCCAA
1 AGAATCTAGACTCATGCACCCCAA
36120589 AG
1 AG
36120591 GTAGGGTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 7 0.29
23 2 0.08
24 15 0.62
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.17
Consensus pattern (24 bp):
AGAATCTAGACTCATGCACCCCAA
Found at i:36127428 original size:27 final size:27
Alignment explanation
Indices: 36127398--36127575 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
36127388 ATATTGAGCC
* * *
36127398 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
36127425 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
36127452 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
36127480 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
36127507 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
36127534 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
36127561 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36127576 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:36127491 original size:55 final size:55
Alignment explanation
Indices: 36127398--36127575 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
36127388 ATATTGAGCC
* * *
36127398 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
36127452 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
36127507 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
36127561 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36127576 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:36127537 original size:82 final size:81
Alignment explanation
Indices: 36127419--36127574 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36127409 TGCTATACAA
* * *
36127419 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
36127484 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
36127501 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
36127565 CACTTAGTGC
65 CACTTAGTGC
36127575 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36130298 original size:114 final size:114
Alignment explanation
Indices: 36130046--36130919 Score: 1078
Period size: 114 Copynumber: 7.7 Consensus size: 114
36130036 TATTTGTAAG
* * * * * ** * * * *
36130046 CGCCGCAAAAAATGTTAGCCAAAACGCATCGTTTGTTCCCGAGGTATATTAGACTTGGTGGCGTT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
*
36130111 TATGG-AAAACGCCGCTAAAGGAGAGTATTAGAGGCGCTTTGTAAGAAA
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* *
36130159 CGCCGTAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* * * * *
36130224 TGTGGAAAAACGCCACTATAGCACAGTATTAGCGGCG-TTT-TATAGAAAA
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTA-AG-AAA
* * * * *
36130273 CGCCGCAAAATATCTTAACCAAAACGCATCATTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* * * * *
36130338 TACGAAAAAATGCCGCTAAAGGAGAGTATTAAAGGCGCTTTGTAAGAAA
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * *
36130387 CGCCACAAAATATCTTAACCAAAATGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* * * *
36130452 TGTGGAAAAACGCCGCTATAGCACAGTATTAGCGGCG-TTT-TATAGAAAA
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTA-AG-AAA
* * * *
36130501 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
36130566 TATGGAAAAACGCCGCTAAATG-AGAGTATTAGAGGCGCTTTGTAAGAAA
66 TATGGAAAAACGCCGCTAAA-GCAGAGTATTAGAGGCGCTTTGTAAGAAA
* *
36130615 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTATTAATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* * * * * * * *
36130680 TGTGGAAAAACGCCGCTATAGCATAGCATTGGCGGCGTTTTGTATGAAA
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * * * * *
36130729 TGCCACAAGATATCTTAACCAAAACGCATCGTTTGGTCTTGATGAATATAAAAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* * * *
36130794 TACGAAAAAAGGCCGC-AAAGCAGAGTATTAGAGGCGCTTTGTAAGAAT
66 TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
36130842 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
* *
36130907 CATGTAAAAACGC
66 TATGGAAAAACGC
36130920 ATGTAGGTTT
Statistics
Matches: 638, Mismatches: 112, Indels: 22
0.83 0.15 0.03
Matches are distributed among these distances:
112 4 0.01
113 157 0.25
114 462 0.72
115 11 0.02
116 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (114 bp):
CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
TATGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
Found at i:36130405 original size:228 final size:228
Alignment explanation
Indices: 36130015--36130906 Score: 1364
Period size: 228 Copynumber: 3.9 Consensus size: 228
36130005 AACGCCATTA
* * * * * *
36130015 TATAGCACA--ATTAGCGGCG-TTTATTTGTAAGCGCCGCAAAAAATGTTAGCCAAAACGCATCG
1 TATAGCACAGTATTAGCGGCGTTTTA-TAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCG
* ** * * * * * *
36130077 TTTGTTCCCGAGGTATATTAGACTTGGTGGCGTTTATG-GAAAACGCCGCTAAAGGAGAGTATTA
65 TTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAACGCCGCTAAAGGAGAGTATTA
*
36130141 GAGGCGCTTTGTAAGAAACGCCGTAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTAT
130 GAGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTAT
*
36130206 ATTAGAATTAGTGGCGCTTGTGGAAAAACGCCAC
195 ATTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
*
36130240 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCAT
1 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCGT
* *
36130305 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAATGCCGCTAAAGGAGAGTATTAA
66 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAACGCCGCTAAAGGAGAGTATTAG
* *
36130370 AGGCGCTTTGTAAGAAACGCCACAAAATATCTTAACCAAAATGCAGCGTTTGGTCTTAATGTATA
131 AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
36130435 TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
196 TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
36130468 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCGT
1 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCGT
* * *
36130533 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTATGGAAAAACGCCGCTAAATGAGAGTATTAG
66 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAACGCCGCTAAAGGAGAGTATTAG
*
36130598 AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTATTAATGTATA
131 AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
36130663 TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
196 TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
* * * * * * *
36130696 TATAGCATAGCATTGGCGGCGTTTTGTATG-AAATGCCACAAGATATCTTAACCAAAACGCATCG
1 TATAGCACAGTATTAGCGGCGTTTTATA-GAAAACGCCGCAAAATATCTTAACCAAAACGCATCG
* * * * *
36130760 TTTGGTCTTGATGAATATAAAAATTAGTGGCGGTTACGAAAAAAGGCCGC-AAAGCAGAGTATTA
65 TTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAACGCCGCTAAAGGAGAGTATTA
* *
36130824 GAGGCGCTTTGTAAGAATCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTAT
130 GAGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTAT
36130889 ATTAGAATTAGTGGCGCT
195 ATTAGAATTAGTGGCGCT
36130907 CATGTAAAAA
Statistics
Matches: 613, Mismatches: 49, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
225 9 0.01
227 163 0.27
228 440 0.72
229 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (228 bp):
TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCGT
TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGAAAAAACGCCGCTAAAGGAGAGTATTAG
AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
Found at i:36131231 original size:13 final size:14
Alignment explanation
Indices: 36131184--36131271 Score: 56
Period size: 13 Copynumber: 6.4 Consensus size: 14
36131174 GGAATTTTGA
*
36131184 GTTTAGGGTTTATG
1 GTTTAGGGTTTAGG
* * *
36131198 ATGTA-GGTTTAGT
1 GTTTAGGGTTTAGG
*
36131211 GTTTTGGGTTTAGG
1 GTTTAGGGTTTAGG
*
36131225 GTTTGGGAGTTTTA-G
1 GTTTAGG-G-TTTAGG
* *
36131240 GTTTAAGGTTTGGG
1 GTTTAGGGTTTAGG
*
36131254 GTTT-GGGTTTGGG
1 GTTTAGGGTTTAGG
36131267 GTTTA
1 GTTTA
36131272 AGTCACTTTA
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
13 23 0.41
14 22 0.39
15 7 0.12
16 4 0.07
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTAGG
Found at i:36131256 original size:36 final size:34
Alignment explanation
Indices: 36131201--36131270 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 34
36131191 GTTTATGATG
*
36131201 TAGGTTTAGTGTTTTGGGTTTAGGGTTTGGGAGTTT
1 TAGGTTTAGTGTTTGGGGTTT-GGGTTTGGG-GTTT
36131237 TAGGTTTAAG-GTTTGGGGTTTGGGTTTGGGGTTT
1 TAGGTTT-AGTGTTTGGGGTTTGGGTTTGGGGTTT
36131271 AAGTCACTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 4 0.12
35 9 0.28
36 17 0.53
37 2 0.06
ACGTcount: A:0.10, C:0.00, G:0.41, T:0.49
Consensus pattern (34 bp):
TAGGTTTAGTGTTTGGGGTTTGGGTTTGGGGTTT
Found at i:36131261 original size:6 final size:7
Alignment explanation
Indices: 36131184--36131271 Score: 56
Period size: 7 Copynumber: 12.7 Consensus size: 7
36131174 GGAATTTTGA
36131184 GTTTAGG
1 GTTTAGG
*
36131191 GTTTATG
1 GTTTAGG
* *
36131198 ATGTA-G
1 GTTTAGG
*
36131204 GTTTAGT
1 GTTTAGG
*
36131211 GTTTTGG
1 GTTTAGG
36131218 GTTTAGG
1 GTTTAGG
*
36131225 GTTTGGG
1 GTTTAGG
36131232 AGTTTTA-G
1 -G-TTTAGG
*
36131240 GTTTAAG
1 GTTTAGG
*
36131247 GTTTGGG
1 GTTTAGG
36131254 GTTT-GG
1 GTTTAGG
*
36131260 GTTTGGG
1 GTTTAGG
36131267 GTTTA
1 GTTTA
36131272 AGTCACTTTA
Statistics
Matches: 62, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
6 14 0.23
7 43 0.69
8 2 0.03
9 3 0.05
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:36131819 original size:12 final size:12
Alignment explanation
Indices: 36131802--36131829 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
36131792 TACATTTTTT
36131802 TAATAATATTAA
1 TAATAATATTAA
36131814 TAATAATATTAA
1 TAATAATATTAA
36131826 TAAT
1 TAAT
36131830 GTCATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:36135152 original size:21 final size:21
Alignment explanation
Indices: 36135087--36135157 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
36135077 CTACAACTTA
36135087 AAGCAGAGG-TGGCAGCGAGGG
1 AAGCAGAGGCT-GCAGCGAGGG
* * *
36135108 AAACAGCGGCTGTAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
36135129 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
*
36135150 AAGTAGAG
1 AAGCAGAG
36135158 CAGAGCAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 40 0.98
22 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.45, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:36138464 original size:33 final size:28
Alignment explanation
Indices: 36138393--36138474 Score: 103
Period size: 27 Copynumber: 2.8 Consensus size: 28
36138383 AATGTGAAAG
*
36138393 GGGGTTGCTAAGTGCTGATT-CCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCCCCA
36138420 GGGGTTGCTAAGTGCTGATTCCCCTACCCA
1 GGGGTTGCTAAGTGCTGATTCCCC--CCCA
36138450 CTGGTGGTTGCTAAGTGCTGATTCC
1 --GG-GGTTGCTAAGTGCTGATTCC
36138475 ACCATATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
27 20 0.42
28 3 0.06
30 3 0.06
32 2 0.04
33 20 0.42
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.29
Consensus pattern (28 bp):
GGGGTTGCTAAGTGCTGATTCCCCCCCA
Found at i:36138546 original size:105 final size:104
Alignment explanation
Indices: 36138210--36138571 Score: 501
Period size: 104 Copynumber: 3.5 Consensus size: 104
36138200 ATTACATATA
** * *
36138210 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCTACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
*
36138275 TTTACATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* * * * *
36138314 GAGGGGTTGCTAAGTGCTGATTCCCATACTTATTGGTGGTTGCTATGTGCTGAGTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCTACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
36138379 TTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* * * *
36138418 GAGGGGTTGCTAAGTGCTGATTCCCCTACCCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCTACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT-
* ** *
36138483 TTTGAAATGAAAAAGGGGGTTGCTAAGTGTTGATTCCCCC
65 TTTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
** * * *
36138523 AAGGGGTTGCTGTGTGCTGATTCCCCAATTCAGTGGTGG-TGCTAAGTGC
1 AAGGGGTTGCTAAGTGCTGATTCCCCTACTCATTGGTGGTTGCTAAGTGC
36138572 AGGATCCACC
Statistics
Matches: 229, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
104 161 0.70
105 68 0.30
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCTACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
TTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:36140103 original size:48 final size:49
Alignment explanation
Indices: 36140015--36140135 Score: 192
Period size: 48 Copynumber: 2.5 Consensus size: 49
36140005 GGTCGCATAT
* * *
36140015 GTGGCACGGACTGTGTGTCGGGCCACCAATATTCTTTTAAGATACAAGG
1 GTGGCACGGACTATGTGTCAGGCCACCAATATTCTGTTAAGATACAAGG
36140064 GTGGCACGGACTATGTGT-AGGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTATGTGTCAGGCCACCAATATTCTGTTAAGATACAAGG
*
36140112 GTGGCACGGACTATGT-ACAGGCCA
1 GTGGCACGGACTATGTGTCAGGCCA
36140136 TCGAGAGTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
48 50 0.75
49 17 0.25
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
GTGGCACGGACTATGTGTCAGGCCACCAATATTCTGTTAAGATACAAGG
Found at i:36153945 original size:10 final size:10
Alignment explanation
Indices: 36153930--36153980 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
36153920 AAATGCCAAA
36153930 TTTTATAATT
1 TTTTATAATT
36153940 TTTTATAA-T
1 TTTTATAATT
* *
36153949 TTTAATTA-T
1 TTTTATAATT
36153958 TTTTATAATT
1 TTTTATAATT
* *
36153968 TTTAATAGTT
1 TTTTATAATT
36153978 TTT
1 TTT
36153981 GTTCTGTTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 14 0.41
10 20 0.59
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:36153951 original size:9 final size:9
Alignment explanation
Indices: 36153930--36153971 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
36153920 AAATGCCAAA
36153930 TTTTATAATT
1 TTTTATAA-T
36153940 TTTTATAAT
1 TTTTATAAT
* *
36153949 TTTAATTAT
1 TTTTATAAT
36153958 TTTTATAAT
1 TTTTATAAT
36153967 TTTTA
1 TTTTA
36153972 ATAGTTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTTATAAT
Found at i:36153951 original size:18 final size:19
Alignment explanation
Indices: 36153928--36153980 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
36153918 AAAAATGCCA
36153928 AATTTTATAAT-TTTTTAT
1 AATTTTATAATATTTTTAT
*
36153946 AATTTTA-ATTATTTTTAT
1 AATTTTATAATATTTTTAT
36153964 AATTTT-TAATAGTTTTT
1 AATTTTATAATA-TTTTT
36153981 GTTCTGTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 2 0.07
18 23 0.77
19 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
AATTTTATAATATTTTTAT
Found at i:36157084 original size:85 final size:85
Alignment explanation
Indices: 36156987--36157155 Score: 239
Period size: 85 Copynumber: 2.0 Consensus size: 85
36156977 TCCTTTCTTC
* *
36156987 TTTTTGCACTCAATTGAGCACTTGAACTTTCAAACTACATCAAAAAGACCCTCAAACTTCTTCAA
1 TTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTCAA
*
36157052 AAAAATAATTAAGCCCTTGT
66 AAAAACAATTAAGCCCTTGT
* * * * * * *
36157072 TTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATGCATCATAAAGACCCTTAAAATTTTTCAA
1 TTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTCAA
*
36157137 AAAAGCAATTAAGCCCTTG
66 AAAAACAATTAAGCCCTTG
36157156 CTCTTATTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (85 bp):
TTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTCAA
AAAAACAATTAAGCCCTTGT
Found at i:36157279 original size:35 final size:34
Alignment explanation
Indices: 36157240--36157324 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 34
36157230 TAAAAATATA
**
36157240 AAAAAT-AAAAATGAATAAAAATTGGAATTTTTTAT
1 AAAAATCAAAAA--AATAAAAATTGGAAAATTTTAT
* *
36157275 AAAAATCGTAAAAAATAAAAATTGTAAAATTTTAT
1 AAAAATC-AAAAAAATAAAAATTGGAAAATTTTAT
36157310 AAAAATCATAAAAAA
1 AAAAATCA-AAAAAA
36157325 AATTAACAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
35 38 0.90
37 4 0.10
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (34 bp):
AAAAATCAAAAAAATAAAAATTGGAAAATTTTAT
Found at i:36157294 original size:16 final size:16
Alignment explanation
Indices: 36157273--36157303 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36157263 GGAATTTTTT
36157273 ATAAAAATCGTAAAAA
1 ATAAAAATCGTAAAAA
*
36157289 ATAAAAATTGTAAAA
1 ATAAAAATCGTAAAA
36157304 TTTTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (16 bp):
ATAAAAATCGTAAAAA
Found at i:36157313 original size:19 final size:19
Alignment explanation
Indices: 36157254--36157315 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
36157244 ATAAAAATGA
* **
36157254 ATAAAAATTGGAATTTTTT
1 ATAAAAATTGTAAAATTTT
* *
36157273 ATAAAAATCGTAAAA---A
1 ATAAAAATTGTAAAATTTT
36157289 ATAAAAATTGTAAAATTTT
1 ATAAAAATTGTAAAATTTT
36157308 ATAAAAAT
1 ATAAAAAT
36157316 CATAAAAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 14 0.42
19 19 0.58
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (19 bp):
ATAAAAATTGTAAAATTTT
Found at i:36157577 original size:20 final size:20
Alignment explanation
Indices: 36157464--36157579 Score: 58
Period size: 21 Copynumber: 5.5 Consensus size: 20
36157454 TGGTACAATA
36157464 ATTTTTATAAATTTTTTTACG
1 ATTTTTAT-AATTTTTTTACG
** *
36157485 AAATTTAT-ATTTCTTTAC-
1 ATTTTTATAATTTTTTTACG
* *
36157503 ATTTTGTATAATTTTCTTACA
1 ATTTT-TATAATTTTTTTACG
* * *
36157524 ACTTTATAAAATTTTATAATT-CTAT
1 A-TTTTTATAATTTT-T--TTAC--G
36157549 ATATTTTATAATTTTTTTACG
1 AT-TTTTATAATTTTTTTACG
36157570 ATTTTTATAA
1 ATTTTTATAA
36157580 AATTTTACAA
Statistics
Matches: 70, Mismatches: 14, Indels: 23
0.65 0.13 0.21
Matches are distributed among these distances:
18 3 0.04
19 12 0.17
20 16 0.23
21 17 0.24
22 5 0.07
23 2 0.03
24 4 0.06
25 11 0.16
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTTTTATAATTTTTTTACG
Found at i:36157585 original size:20 final size:21
Alignment explanation
Indices: 36157552--36157609 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
36157542 ATTCTATATA
** *
36157552 TTTTATAATTTTTTTACGA-T
1 TTTTATAAAATTTTTACAATT
36157572 TTTTATAAAA-TTTTACAATT
1 TTTTATAAAATTTTTACAATT
36157592 TTTTATATTAAATTTTTA
1 TTTTATA--AAATTTTTA
36157610 TTAAAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 7 0.23
20 16 0.52
22 3 0.10
23 5 0.16
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTATAAAATTTTTACAATT
Found at i:36157585 original size:47 final size:46
Alignment explanation
Indices: 36157509--36157600 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 46
36157499 TTACATTTTG
*
36157509 TATAATTTTCTTACAACTTTATAAAATTTTATAATTCTATATATTT
1 TATAATTTTCTTACAACTTTATAAAATTTTACAATTCTATATATTT
* ** * *
36157555 TATAATTTTTTTACGATTTTTATAAAATTTTACAATTTTTTATATT
1 TATAATTTTCTTAC-AACTTTATAAAATTTTACAATTCTATATATT
36157601 AAATTTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 13 0.33
47 26 0.67
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.58
Consensus pattern (46 bp):
TATAATTTTCTTACAACTTTATAAAATTTTACAATTCTATATATTT
Found at i:36157943 original size:10 final size:10
Alignment explanation
Indices: 36157911--36157964 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
36157901 AGCAACTGAC
36157911 AAAAATTATTT
1 AAAAATTA-TT
36157922 AAAAA-T-TT
1 AAAAATTATT
36157930 -AAAATTATT
1 AAAAATTATT
*
36157939 AAAAAGGTA-T
1 AAAAA-TTATT
36157949 AAAAATTATT
1 AAAAATTATT
36157959 AAAAAT
1 AAAAAT
36157965 ACTTTTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
7 4 0.11
8 3 0.08
9 4 0.11
10 18 0.50
11 7 0.19
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (10 bp):
AAAAATTATT
Found at i:36158206 original size:36 final size:36
Alignment explanation
Indices: 36158159--36158231 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
36158149 AAAGTTAGAG
36158159 GGTCAAATAAGTTATTATGCCTAAAATTAAATGCAA
1 GGTCAAATAAGTTATTATGCCTAAAATTAAATGCAA
36158195 GGTCAAATAAGTTATTATGCCTAAAATTAAATGCAA
1 GGTCAAATAAGTTATTATGCCTAAAATTAAATGCAA
36158231 G
1 G
36158232 AATTTTTCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (36 bp):
GGTCAAATAAGTTATTATGCCTAAAATTAAATGCAA
Found at i:36159447 original size:17 final size:17
Alignment explanation
Indices: 36159425--36159489 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 17
36159415 CTTAGAGTTC
36159425 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
* * *
36159442 TAATTGTGTAATCTTAGAGTTC
1 TAATTGTAT-A-C--AG-CTTT
36159464 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
36159481 TAATTGTAT
1 TAATTGTAT
36159490 CCATTGATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
17 19 0.51
18 3 0.08
19 1 0.03
20 1 0.03
21 3 0.08
22 10 0.27
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (17 bp):
TAATTGTATACAGCTTT
Found at i:36159463 original size:39 final size:39
Alignment explanation
Indices: 36159409--36159487 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
36159399 GATATGATTA
36159409 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
36159448 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
36159487 T
1 T
36159488 ATCCATTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (39 bp):
TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
Found at i:36159808 original size:48 final size:49
Alignment explanation
Indices: 36159713--36159809 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 49
36159703 TGAGGGAATT
* * ** *
36159713 CTGTTGAATCCTTTATCGTTGTGAGATTAGGCTGGCTTAGGTATTTTTA
1 CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
*
36159762 CTGTTGAATCCTTTATCATTGCGAG-TTAGGCTAACTTAGGCGTTTTTA
1 CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
36159810 AGCAAAGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 19 0.45
49 23 0.55
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (49 bp):
CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
Found at i:36160845 original size:17 final size:17
Alignment explanation
Indices: 36160823--36160887 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 17
36160813 CTTAGAGTTC
36160823 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
* * *
36160840 TAATTGTGTAATCTTAGAGTTC
1 TAATTGTAT-A-C--AG-CTTT
36160862 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
36160879 TAATTGTAT
1 TAATTGTAT
36160888 CCATTGATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
17 19 0.51
18 3 0.08
19 1 0.03
20 1 0.03
21 3 0.08
22 10 0.27
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (17 bp):
TAATTGTATACAGCTTT
Found at i:36160861 original size:39 final size:39
Alignment explanation
Indices: 36160807--36160885 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
36160797 GATATGATTA
36160807 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
36160846 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
36160885 T
1 T
36160886 ATCCATTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (39 bp):
TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
Found at i:36161206 original size:48 final size:49
Alignment explanation
Indices: 36161111--36161207 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 49
36161101 TGAGGGAATT
* * ** *
36161111 CTGTTGAATCCTTTATCGTTGTGAGATTAGGCTGGCTTAGGTATTTTTA
1 CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
*
36161160 CTGTTGAATCCTTTATCATTGCGAG-TTAGGCTAACTTAGGCGTTTTTA
1 CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
36161208 AGCAAAGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 19 0.45
49 23 0.55
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (49 bp):
CTGTTGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
Found at i:36162833 original size:47 final size:48
Alignment explanation
Indices: 36162746--36162836 Score: 114
Period size: 47 Copynumber: 1.9 Consensus size: 48
36162736 CTTTCGTTCA
* **
36162746 GTGATATGTGATTTTCGTATAAGACCATATTTGGGATATGGCATCAGT
1 GTGATATGTGATATTCGTATAAGACCATAGCTGGGATATGGCATCAGT
* *
36162794 GTGATATGTGCTATT-GTGTAAGACCATAGCT-GGACTATGGCAT
1 GTGATATGTGATATTCGTATAAGACCATAGCTGGGA-TATGGCAT
36162837 AGAGAAAACG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
46 3 0.08
47 21 0.57
48 13 0.35
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.35
Consensus pattern (48 bp):
GTGATATGTGATATTCGTATAAGACCATAGCTGGGATATGGCATCAGT
Found at i:36166074 original size:51 final size:50
Alignment explanation
Indices: 36165957--36166197 Score: 227
Period size: 51 Copynumber: 4.8 Consensus size: 50
36165947 AAAGTGATGG
* * * *** *
36165957 TCACATGTGTAGTACTATGTGTAGGCTA-TACGTGTACCGGA-ATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATA-GTTTGA
* * * * * * *
36166006 TCGCATGTGTAGTACTATGTTCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAG-TTTGA
* * *
36166057 TCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATTGGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTT--TGA
* * * *
36166108 TCACGTGTGTAGTACTATGTGCAGGCTATTACGTGAATCGAAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTTTGA
*
36166158 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG
36166198 AATGATAATA
Statistics
Matches: 157, Mismatches: 29, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
49 27 0.17
50 51 0.32
51 77 0.49
52 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTTTGA
Found at i:36166169 original size:101 final size:101
Alignment explanation
Indices: 36165957--36166202 Score: 291
Period size: 101 Copynumber: 2.5 Consensus size: 101
36165947 AAAGTGATGG
* * * *
36165957 TCACATGTGTAGTACTATGTGTAGGCTA-TACGTGTACCGGAATGAAAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
* * * * *
36166021 TATGTTCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTACGCGAACCGAAAAGCTTCGA
* * * * * *
36166057 TCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATTGGATATTAATGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGA-ATGAAAGGTCACATGTGTAGTA
* * * *
36166122 CTATGTGCAGGCTATTACGTGAATCGAAAAG-TTTGA
65 CTATGTGCAGGCTACTACGCGAACCGAAAAGCTTCGA
36166158 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGA
36166203 TAATAGTTAA
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
99 3 0.02
100 27 0.22
101 51 0.42
102 41 0.34
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCGAAAAGCTTCGA
Found at i:36174718 original size:25 final size:25
Alignment explanation
Indices: 36174677--36174742 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
36174667 ATGCTTATTT
*
36174677 GAGCTA-AAGATCTGTATGCTCTCAC
1 GAGCTATAA-ATCGGTATGCTCTCAC
* * *
36174702 GAGTTATAAATTGGTATGCTCTTAC
1 GAGCTATAAATCGGTATGCTCTCAC
36174727 GAGCTATAAATCGGTA
1 GAGCTATAAATCGGTA
36174743 ACCCTAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 32 0.94
26 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (25 bp):
GAGCTATAAATCGGTATGCTCTCAC
Found at i:36178784 original size:2 final size:2
Alignment explanation
Indices: 36178777--36178807 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
36178767 ATTGTGAACA
*
36178777 AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36178808 GGTTAAGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:36179056 original size:3 final size:3
Alignment explanation
Indices: 36179048--36179111 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
36179038 CTAAATGTGC
36179048 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36179096 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
36179112 CAATTTTTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:36181788 original size:21 final size:22
Alignment explanation
Indices: 36181762--36181805 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
36181752 ATTTGATTTT
*
36181762 AAAAAATTTAAT-GACTAAATA
1 AAAAAAATTAATAGACTAAATA
36181783 AAAAAAATTAATAAGACTAAATA
1 AAAAAAATTAAT-AGACTAAATA
36181806 TGACTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (22 bp):
AAAAAAATTAATAGACTAAATA
Found at i:36185253 original size:18 final size:18
Alignment explanation
Indices: 36185230--36185280 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
36185220 TTCACCTCCA
* *
36185230 CAACCATCATTCACAGGC
1 CAACCATCATCCACAGAC
*
36185248 CAACCACCATCCACAGAC
1 CAACCATCATCCACAGAC
*
36185266 CAACCATCGTCCACA
1 CAACCATCATCCACA
36185281 AGCCCCCCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.45, G:0.08, T:0.12
Consensus pattern (18 bp):
CAACCATCATCCACAGAC
Found at i:36185854 original size:40 final size:40
Alignment explanation
Indices: 36185799--36185880 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
36185789 ACATTGGCAT
36185799 ATACAACAACTTGATGTCAATAATGCGTTTCTTCATGGTG
1 ATACAACAACTTGATGTCAATAATGCGTTTCTTCATGGTG
36185839 ATACAACAACTTGATGTCAATAATGCGTTTCTTCATGGTG
1 ATACAACAACTTGATGTCAATAATGCGTTTCTTCATGGTG
36185879 AT
1 AT
36185881 CTCAATGAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (40 bp):
ATACAACAACTTGATGTCAATAATGCGTTTCTTCATGGTG
Found at i:36193814 original size:31 final size:30
Alignment explanation
Indices: 36193762--36193819 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36193752 CTTTCGAGCC
* *
36193762 TAGGGGCAAAATTGTAATTTTCTAAAACTT
1 TAGGGGCAAAAATGTAATTTTCCAAAACTT
*
36193792 TAGGGGTAAAAATGTAATTTTTCCAAAA
1 TAGGGGCAAAAATGTAA-TTTTCCAAAA
36193820 TGTAATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTCCAAAACTT
Found at i:36194175 original size:51 final size:50
Alignment explanation
Indices: 36194110--36194299 Score: 213
Period size: 51 Copynumber: 3.8 Consensus size: 50
36194100 AAATGTCGCA
* * *
36194110 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGATCATG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAG-TTTGATCACG
** * * *
36194161 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATA-TTAATGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGTT--TGATCACG
*
36194212 TGTGTAGTACTATGTGCAGGCTACTATGTGAACCAGAA-AGTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAATAGTTTGATCACG
** * *
36194262 TGTGTAGTACTATGTAAAGGCTACTACGTGTATCGAAT
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAT
36194300 GATAATAGTT
Statistics
Matches: 115, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
49 5 0.04
50 36 0.31
51 70 0.61
52 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGTTTGATCACG
Found at i:36194330 original size:101 final size:101
Alignment explanation
Indices: 36194055--36194305 Score: 330
Period size: 101 Copynumber: 2.5 Consensus size: 101
36194045 AAAGTGATGG
* * *
36194055 TCACGTGTGTAGTACTATGTGTAGGCTACTACATGTATTAGAATGA-AATGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTA-TCGAATGATAATGTCACATGTGTAGTA
*
36194119 CTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
65 CTATGTGCAGGCTACTATGCGAACCGAATAGCTTCGA
* * * *
36194156 TCATGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGAT-ATTAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTATCGAATGA-TAAT-GTCACATGTGTAGT
* *
36194220 ACTATGTGCAGGCTACTATGTGAACCAGAA-AG-TTTGA
64 ACTATGTGCAGGCTACTATGCGAACC-GAATAGCTTCGA
* *
36194257 TCACGTGTGTAGTACTATGTAAAGGCTACTACGTGTATCGAATGATAAT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTATCGAATGATAAT
36194306 AGTTAAATGA
Statistics
Matches: 131, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 84 0.64
102 39 0.30
103 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTATCGAATGATAATGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGAACCGAATAGCTTCGA
Found at i:36202935 original size:30 final size:30
Alignment explanation
Indices: 36202901--36202964 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
36202891 ACTTAACAAG
36202901 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
36202931 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
36202961 -AAAT
1 CAAAT
36202965 AAAATAAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:36203018 original size:22 final size:22
Alignment explanation
Indices: 36202993--36203035 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36202983 TATCCAAAGA
36202993 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* *
36203015 ATAATAGTAAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
36203036 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:36204328 original size:28 final size:27
Alignment explanation
Indices: 36204277--36204357 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 27
36204267 TTTTCTAAAT
36204277 AAATATAAAAATTATTATAAAATTATA
1 AAATATAAAAATTATTATAAAATTATA
* *
36204304 AAATATAGAAATTTATTTTAAAATTATTA
1 AAATATA-AAAATTATTATAAAATTA-TA
* *
36204333 ATAATGGTAAGAAATTATTAGAAAA
1 A-AAT-ATAA-AAATTATTATAAAA
36204358 AATTTAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
27 7 0.16
28 16 0.37
29 3 0.07
30 4 0.09
31 13 0.30
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (27 bp):
AAATATAAAAATTATTATAAAATTATA
Found at i:36206428 original size:22 final size:22
Alignment explanation
Indices: 36206403--36206445 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36206393 TATCCAAACA
*
36206403 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAATAGCAAC
* *
36206425 ATAATAGTAAAATAATAGCAA
1 ATAACAATAAAATAATAGCAA
36206446 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAATAGCAAC
Found at i:36206441 original size:11 final size:11
Alignment explanation
Indices: 36206411--36206449 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
36206401 CAATAACAAT
*
36206411 AAAATAGTAGC
1 AAAATAATAGC
* *
36206422 AACATAATAGT
1 AAAATAATAGC
36206433 AAAATAATAGC
1 AAAATAATAGC
36206444 AAAATA
1 AAAATA
36206450 GGGAGAAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:36211477 original size:51 final size:49
Alignment explanation
Indices: 36211419--36211607 Score: 200
Period size: 51 Copynumber: 3.8 Consensus size: 49
36211409 GTTCGGTTCG
*
36211419 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACA
1 CATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCG-TACA
* * * *
36211470 CATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCTGTACG
1 CATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCC-GTACA
* * * *
36211521 CATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACA
1 CATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCC-GTACA
** * *
36211571 TGTAGTGGCCTGTACATAGTACTACACACGTGACCAT
1 CATAGTAGCCTGCACATAGTACTACACACGTGACCAT
36211608 CACTTTCATT
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
49 2 0.02
50 36 0.32
51 72 0.64
52 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGTACA
Found at i:36211637 original size:101 final size:101
Alignment explanation
Indices: 36211419--36211603 Score: 246
Period size: 101 Copynumber: 1.8 Consensus size: 101
36211409 GTTCGGTTCG
* *
36211419 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
* * *
36211484 CATAGTACTACACACGTGATCGAAACTATCCTGTACG
65 CATAGTACTACACACGTGATCCAAACTATCATGTACA
* * ** * *
36211521 CATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATGTAGTGGCCTGTA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTAGCCTGCA
36211585 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
36211604 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 37 0.50
102 33 0.45
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCCAAACTATCATGTACA
Found at i:36214836 original size:10 final size:10
Alignment explanation
Indices: 36214802--36214839 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
36214792 AGATGGAAAC
36214802 GAGCTC-ATT
1 GAGCTCAATT
*
36214811 GAGCTGCAAAT
1 GAGCT-CAATT
36214822 GAGCTCAATT
1 GAGCTCAATT
36214832 GAGCTCAA
1 GAGCTCAA
36214840 CAAGCTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 5 0.20
10 13 0.52
11 7 0.28
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (10 bp):
GAGCTCAATT
Found at i:36215869 original size:23 final size:23
Alignment explanation
Indices: 36215843--36215887 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36215833 AAAGCCATTA
36215843 TGGCATATTCTATGATGCCTTTG
1 TGGCATATTCTATGATGCCTTTG
* * *
36215866 TGGCGTATTTTGTGATGCCTTT
1 TGGCATATTCTATGATGCCTTT
36215888 ATGGTGCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.13, C:0.16, G:0.24, T:0.47
Consensus pattern (23 bp):
TGGCATATTCTATGATGCCTTTG
Found at i:36217438 original size:32 final size:32
Alignment explanation
Indices: 36217393--36217709 Score: 373
Period size: 32 Copynumber: 9.9 Consensus size: 32
36217383 ATATGTTTGA
*
36217393 TATATTGCTGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * * *
36217425 TATATTGCCGAATTAAATTGTATAGGTATGCA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** * *
36217457 CCTATTGTCGAATTGAATTGCATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* *
36217489 TATATTGGCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * *
36217521 TATATTGCCAAATTGAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
**
36217553 CCTATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * *
36217585 TATATTGTCGAATTGAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
**
36217617 CCTATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * *
36217649 TATATTGCCGAATTGAATTATATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** ** *
36217681 CCTATTTTCGAATTGATTTGTATATGTAT
1 TATATTGCCGAATTGAATTGTATATGTAT
36217710 TTATATATTG
Statistics
Matches: 235, Mismatches: 50, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 235 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (32 bp):
TATATTGCCGAATTGAATTGTATATGTATACT
Found at i:36217720 original size:96 final size:96
Alignment explanation
Indices: 36217393--36217709 Score: 420
Period size: 96 Copynumber: 3.3 Consensus size: 96
36217383 ATATGTTTGA
* *
36217393 TATATTG-CTGAATTGAATTGTATATGTATACTTATATTGCCGAATTAAATTGTATAGGTATGCA
1 TATATTGTC-GAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACA
* *
36217457 CCTATTGTCGAATTGAATTGCATATGTATACT
65 CCTATTGCCGAATTGAATTGTATATGTATACT
* * *
36217489 TATATTGGCGAATTGAATTGTGTATGTATACTTATATTGCCAAATTGAATTGTATAGGTATACAC
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
36217554 CTATTGCCGAATTGAATTGTATATGTATACT
66 CTATTGCCGAATTGAATTGTATATGTATACT
* *** * **
36217585 TATATTGTCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACTT
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
* * * *
36217650 ATATTGCCGAATTGAATTATATAGGTATACA
66 CTATTGCCGAATTGAATTGTATATGTATACT
** * *
36217681 CCTATTTTCGAATTGATTTGTATATGTAT
1 TATATTGTCGAATTGAATTGTATATGTAT
36217710 TTATATATTG
Statistics
Matches: 195, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
96 194 0.99
97 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (96 bp):
TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
CTATTGCCGAATTGAATTGTATATGTATACT
Found at i:36217907 original size:43 final size:43
Alignment explanation
Indices: 36217845--36218003 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
36217835 GGCTTCTGAG
*
36217845 GTGTAAGACAATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
* * *
36217888 GTGTAAGACCATGTTTGGGACATTGGCATTGAAGTGAGGAAAT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
* * ** **
36217931 GTGCAAGACCATGTCTGGGACATTGGCATC-ATGT-ATTATTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
* * *
36217972 GTATAAGACCCTGTCTGGGACAGTGGCATCGA
1 GTGTAAGACCATGTCTGGGACATTGGCATCGA
36218004 TATGTGTTAA
Statistics
Matches: 98, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 28 0.29
42 4 0.04
43 66 0.67
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
Found at i:36221703 original size:23 final size:23
Alignment explanation
Indices: 36221673--36221718 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
36221663 TAAAAAGAAT
36221673 TAAAATAATAGTACAT-AATAAAA
1 TAAAATAAT-GTACATAAATAAAA
36221696 TAAAATAATGTACATAAATAAAA
1 TAAAATAATGTACATAAATAAAA
36221719 ATAGGTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAATGTACATAAATAAAA
Found at i:36223391 original size:44 final size:44
Alignment explanation
Indices: 36223336--36223438 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 44
36223326 GCTCCCAATA
* * * *
36223336 CAGGAAGACAAGATCTGTTATTTTCAAACTACTCCACTGCTGCT
1 CAGGGAGACAAGATCTGGTATCTTCAAACTACTCCACTACTGCT
* * * *
36223380 CAGGGAGACAAG-GCTGGTATCTTCGATCTGCTCCACTACTGCT
1 CAGGGAGACAAGATCTGGTATCTTCAAACTACTCCACTACTGCT
* *
36223423 TAGGGAGACAGGATCT
1 CAGGGAGACAAGATCT
36223439 ACAATCTTAC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
43 34 0.72
44 13 0.28
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (44 bp):
CAGGGAGACAAGATCTGGTATCTTCAAACTACTCCACTACTGCT
Found at i:36223747 original size:44 final size:44
Alignment explanation
Indices: 36223438--36223744 Score: 443
Period size: 44 Copynumber: 7.0 Consensus size: 44
36223428 AGACAGGATC
* * * *
36223438 TACAATCTTACACCTATTCCACTGCTGTTTATGGAGCTAGGAAA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
*
36223482 TGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36223526 TGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGTTAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
36223570 TACAATCTTCCACCTATTCCACTGTTGTTCAGGGAGATAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36223614 TACAATTTTCCACCTATTCCAATGTTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36223658 TGCAATCTTCCTCCTATTCCACTGCTGTTCAGGGAGCTAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36223702 TACAATCTTCTATCTATTCCACTGCTGTTCAGGGAGATAGGAC
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGAC
36223745 TTATAGTTTC
Statistics
Matches: 238, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 238 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
Found at i:36225068 original size:62 final size:60
Alignment explanation
Indices: 36225001--36225117 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 60
36224991 TTTTCATCAT
** * *
36225001 TTTTTTGACTCAAAGTGCCTCTTGCAGGTTTTCACCTTGATCTTTCTTCTTCTTTTTTTCTA
1 TTTTTTGACTCAAAGTAACTCTTACAGGTTTTCACCTTGATC--TCTTCTCCTTTTTTTCTA
* * *
36225063 TTTTTTGACTCAAAGTAACTTTTACGGGTTTTCACCTTGGTCTCTTCTCCTTTTT
1 TTTTTTGACTCAAAGTAACTCTTACAGGTTTTCACCTTGATCTCTTCTCCTTTTT
36225118 AAGCAAACTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
60 12 0.25
62 36 0.75
ACGTcount: A:0.14, C:0.22, G:0.12, T:0.52
Consensus pattern (60 bp):
TTTTTTGACTCAAAGTAACTCTTACAGGTTTTCACCTTGATCTCTTCTCCTTTTTTTCTA
Found at i:36234298 original size:37 final size:37
Alignment explanation
Indices: 36234248--36234326 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
36234238 TTATTACGAA
* * *
36234248 GTCTTACCCGGACATAA-TCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36234285 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36234322 GTCTT
1 GTCTT
36234327 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36234523 original size:47 final size:47
Alignment explanation
Indices: 36234445--36235032 Score: 969
Period size: 47 Copynumber: 12.5 Consensus size: 47
36234435 CGCTTCGGGA
* * * * * * *
36234445 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36234492 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36234539 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36234586 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36234633 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36234680 CTTATCACATATATACAATTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36234727 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36234774 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36234821 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36234868 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36234917 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36234964 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36235011 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
36235033 TTGGCTGAAT
Statistics
Matches: 516, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 470 0.91
49 46 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36240444 original size:11 final size:11
Alignment explanation
Indices: 36240425--36240466 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
36240415 CACCAATGAA
*
36240425 TAACGAACAAT
1 TAACAAACAAT
36240436 TAACAAACAAT
1 TAACAAACAAT
*
36240447 TAACAAACAAA
1 TAACAAACAAT
36240458 T-ACAAACAA
1 TAACAAACAA
36240467 ACATAACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.64, C:0.19, G:0.02, T:0.14
Consensus pattern (11 bp):
TAACAAACAAT
Found at i:36240835 original size:23 final size:23
Alignment explanation
Indices: 36240805--36240850 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
36240795 TAAAAAGAAT
36240805 TAAAATAATAGTACAT-AATAAAA
1 TAAAATAAT-GTACATAAATAAAA
36240828 TAAAATAATGTACATAAATAAAA
1 TAAAATAATGTACATAAATAAAA
36240851 ATAGGTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAATGTACATAAATAAAA
Found at i:36249202 original size:781 final size:779
Alignment explanation
Indices: 36248111--36249542 Score: 2352
Period size: 781 Copynumber: 1.8 Consensus size: 779
36248101 TTTTAATAAA
36248111 TAAGTTTTTAGTATCACACTCATTAAATGTAATTTTATGTGTTTATTTTTTAATTTATTAATAAA
1 TAAGTTTTTAGTATCACACTCATTAAATGTAATTTTATGTGTTTATTTTTTAATTTATTAATAAA
* *
36248176 AATAAATAATAGTATTTTAATTTTTAAACATGATTAAAATATATTAAATATTTTGATTATTAAAA
66 AATAAATAATAGTATTTTAATTTTTAAACATGATTAAAATATATTAAATATATTGATAATTAAAA
* *
36248241 TATTAAAAAAATATAAAAATTAATAATAAGATTCTAACATTTTTAAATATTGTTAGTTACAACTT
131 TATTAAAAAAAAATAAAAATTAATAATAAGATTCTAACATTTTTAAATATTGTTAGCTACAACTT
* *
36248306 GGATGAAAATATTAAATGTTGAAATTTTTTTATATAATACTTAGAATTATTCATAATTTTTTTTC
196 GGATGAAAATATTAAATGCTGAAATTTTTTTATATAATACTTAGAATTATTCATAATCTTTTTTC
* * * *
36248371 AACTTTAGACAGGAGGATAAATGTAAATGTTAATAAAAATGTAACCACCATCACTCTATCTTCTT
261 AACTTTAGACAGGAGGATAAATGTAAACGTCAATAAAAATGTAACCACCATCACTCCATCTTCTC
*
36248436 TTCATTATGGACTCCCTTTTGGAAAAATTACATTTATGTCTTATGTTCGTTTCCGGCTCACAAGA
326 CTCATTATGGACTCCCTTTTGGAAAAATTACATTTATGTCTTATGTTCGTTTCCGGCTCACAAGA
* * *
36248501 ATTCTAAATATATAAACAATCCTACGTGGAGATAATAGTTCACAGTCTATTCTCTAAGAACCATA
391 ATTCTAAAAATAGAAACAATCCTACGTGGAGATAATAGTTCACAGTCTATTCCCTAAGAACCATA
* **
36248566 ACCTTGGAAAAAAATAATTATATAACAAATATATATAATATTGCATTCATTTGCATACATTCACC
456 ACCTTGAAAAAAAATAATTATATAACAAATATATATAATATTGCATTCATTCACATACATTCACC
* * * *
36248631 TAAACATGCGAATATTTATAAGAATGTCATATTTTAT-CAA-ATTAAACAAACAAAATGAAAAGA
521 TAAACATGCGAATAATTACAAGAATGTCACATCTTATCCAATATTAAACAAACAAAATGAAAAGA
* * * * * *
36248694 GAGATTCAGCCTCGGTTTATATTATAAATATAGCACATCTTGACTCAGATACTAATTGTTTGAAA
586 GAGATTCAGCCTCAGTTTACACTATAAACATAGCACATCTTGACTCAGATACGAATTGTTGGAAA
36248759 ATAGTTTTTAAATGTTGTGGTGTGACTTGGGTGAGAGAGAAAGCAATTGTGAAACGAGGCTTTGA
651 ATAGTTTTTAAATGTTGTGGTGTGACTTGGGTGAGAGAGAAAGCAATTGTGAAACGAGGCTTTGA
36248824 TAGTATAGCATTTGCAATATATATACTTAGCACGGTTGAATTTTTTTAAACAACAATATTGCTT
716 TAGTATAGCATTTGCAATATATATACTTAGCACGGTTGAATTTTTTTAAACAACAATATTGCTT
*
36248888 TAAGTTTTTAGTATCACACTTATTAAATGTAATTTTATGTGTTTA-TTTTTAATTTATTAATAAA
1 TAAGTTTTTAGTATCACACTCATTAAATGTAATTTTATGTGTTTATTTTTTAATTTATTAAT-AA
*
36248952 AAATAAATAATATTATTTTAATTTTTAAACATGATT-AAATATATTAAATATATTGATAATTAAA
65 AAATAAATAATAGTATTTTAATTTTTAAACATGATTAAAATATATTAAATATATTGATAATTAAA
36249016 ATATTAAAAAATAAAAAATAGAGAAATTAATAATAAGATTCTAACATTTTTAAATATTGTTAGCT
130 ATATT---AAA-AAAAAATA-A-AAATTAATAATAAGATTCTAACATTTTTAAATATTGTTAGCT
* *
36249081 ACGACTTGGATGAAAATATTAAATGCT-AAATTTTTTTATATAATGCTTAGAATTATTCATAATC
189 ACAACTTGGATGAAAATATTAAATGCTGAAATTTTTTTATATAATACTTAGAATTATTCATAATC
**
36249145 TTTTTTCAACTTTAGACAGGAGGATAAATGTAAACGTCAATAAAAATGTAACCACCATTGCTCCA
254 TTTTTTCAACTTTAGACAGGAGGATAAATGTAAACGTCAATAAAAATGTAACCACCATCACTCCA
*
36249210 TCTTCTCCTCGTTATGGACTCCCTTTTGGAAAAATTACATTTATGTCTTATGTTCGTTTCCGGCT
319 TCTTCTCCTCATTATGGACTCCCTTTTGGAAAAATTACATTTATGTCTTATGTTCGTTTCCGGCT
* * * *
36249275 CATAAGAATTCTAAAAATAGAAACAATCCTACGTGGAGATGATAGTTTACGGTCTATTCCCTAAG
384 CACAAGAATTCTAAAAATAGAAACAATCCTACGTGGAGATAATAGTTCACAGTCTATTCCCTAAG
36249340 AACCATAACCTTGAAAAAAAATAATTATATAACAAATATATATAATATTGCATTCATTCACATAC
449 AACCATAACCTTGAAAAAAAATAATTATATAACAAATATATATAATATTGCATTCATTCACATAC
* * * *
36249405 ATTCCCCTAAACATGTGAATAATTACAAGAATGTCACATCTTATCCAATATTAATCAAACAAGAT
514 ATTCACCTAAACATGCGAATAATTACAAGAATGTCACATCTTATCCAATATTAAACAAACAAAAT
* * * *
36249470 GAAGAGAGAGATTCAGTCTCAGTTTACACTATAAACATAGCACATCTTGGCTCTGATACGAATTG
579 GAAAAGAGAGATTCAGCCTCAGTTTACACTATAAACATAGCACATCTTGACTCAGATACGAATTG
36249535 TTGGAAAA
644 TTGGAAAA
36249543 AACCCAGTTT
Statistics
Matches: 600, Mismatches: 46, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
776 47 0.08
777 81 0.14
779 3 0.00
780 7 0.01
781 316 0.53
782 69 0.12
783 77 0.13
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (779 bp):
TAAGTTTTTAGTATCACACTCATTAAATGTAATTTTATGTGTTTATTTTTTAATTTATTAATAAA
AATAAATAATAGTATTTTAATTTTTAAACATGATTAAAATATATTAAATATATTGATAATTAAAA
TATTAAAAAAAAATAAAAATTAATAATAAGATTCTAACATTTTTAAATATTGTTAGCTACAACTT
GGATGAAAATATTAAATGCTGAAATTTTTTTATATAATACTTAGAATTATTCATAATCTTTTTTC
AACTTTAGACAGGAGGATAAATGTAAACGTCAATAAAAATGTAACCACCATCACTCCATCTTCTC
CTCATTATGGACTCCCTTTTGGAAAAATTACATTTATGTCTTATGTTCGTTTCCGGCTCACAAGA
ATTCTAAAAATAGAAACAATCCTACGTGGAGATAATAGTTCACAGTCTATTCCCTAAGAACCATA
ACCTTGAAAAAAAATAATTATATAACAAATATATATAATATTGCATTCATTCACATACATTCACC
TAAACATGCGAATAATTACAAGAATGTCACATCTTATCCAATATTAAACAAACAAAATGAAAAGA
GAGATTCAGCCTCAGTTTACACTATAAACATAGCACATCTTGACTCAGATACGAATTGTTGGAAA
ATAGTTTTTAAATGTTGTGGTGTGACTTGGGTGAGAGAGAAAGCAATTGTGAAACGAGGCTTTGA
TAGTATAGCATTTGCAATATATATACTTAGCACGGTTGAATTTTTTTAAACAACAATATTGCTT
Found at i:36250295 original size:25 final size:25
Alignment explanation
Indices: 36250267--36250323 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
36250257 ATCCCCAACA
* *
36250267 AAATTTTGACTATTTTACCCCTGGT
1 AAATTTTGACAATTTTACCCCTAGT
* *
36250292 AAATTTTGACAATTTTGCCCCTATT
1 AAATTTTGACAATTTTACCCCTAGT
36250317 AAATTTT
1 AAATTTT
36250324 CGAGAAACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.46
Consensus pattern (25 bp):
AAATTTTGACAATTTTACCCCTAGT
Done.