Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 125 of 211
Found at i:36276166 original size:15 final size:15
Alignment explanation
Indices: 36276146--36276175 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36276136 CACAGTTTCA
36276146 CTATAGCTTTATAAT
1 CTATAGCTTTATAAT
*
36276161 CTATAGTTTTATAAT
1 CTATAGCTTTATAAT
36276176 ATAAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (15 bp):
CTATAGCTTTATAAT
Found at i:36277644 original size:42 final size:42
Alignment explanation
Indices: 36277598--36277698 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
36277588 CTAAGATCAA
* * *
36277598 CATAGTCGGCATGCTTAACAT-TCTAATCAAATCTCAATTTAT
1 CATAGTCGGCATGCTTAACATGT-AAATCAAATATCAATTAAT
*
36277640 CATAGTCGACATGCTTAACATGTAAATCAAATATCAATTAAT
1 CATAGTCGGCATGCTTAACATGTAAATCAAATATCAATTAAT
* *
36277682 AATAGT-GGCATGATTAA
1 CATAGTCGGCATGCTTAA
36277699 AAATATATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 9 0.18
42 41 0.80
43 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (42 bp):
CATAGTCGGCATGCTTAACATGTAAATCAAATATCAATTAAT
Found at i:36277945 original size:17 final size:17
Alignment explanation
Indices: 36277920--36277954 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36277910 ATAAATTTTT
36277920 TTATCAAATATTAAATC
1 TTATCAAATATTAAATC
* *
36277937 TTATTAAATATTTAATC
1 TTATCAAATATTAAATC
36277954 T
1 T
36277955 CATTTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATCAAATATTAAATC
Found at i:36280134 original size:46 final size:46
Alignment explanation
Indices: 36280083--36280176 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
36280073 ATAGTGTGGC
36280083 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
36280129 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
36280175 GT
1 GT
36280177 CTTTTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:36280600 original size:63 final size:61
Alignment explanation
Indices: 36280512--36280653 Score: 214
Period size: 62 Copynumber: 2.3 Consensus size: 61
36280502 AAAAAAATGT
*
36280512 AAAAAAAGAATTTAGTTTCCATTCAAAATTCAAGAGTGGATATCAAGTTGTAAAAAAAATTTCGT
1 AAAAAAA-AAGTTAG-TTCCATTC-AAATTCAAGAGTGGATATCAAGTTGT-AAAAAAA-TTCGT
36280577 G
61 G
*
36280578 AAAAAAAAA-TTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCTTG
1 AAAAAAAAAGTTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCGTG
36280638 AAAAAAAAAGTTAGTT
1 AAAAAAAAAGTTAGTT
36280654 TTGAACATAC
Statistics
Matches: 74, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
60 14 0.19
61 13 0.18
62 26 0.35
63 8 0.11
64 4 0.05
65 2 0.03
66 7 0.09
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30
Consensus pattern (61 bp):
AAAAAAAAAGTTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCGTG
Found at i:36283243 original size:23 final size:23
Alignment explanation
Indices: 36283212--36283255 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
36283202 TGACTTTTCA
36283212 GCTCATAACTCAAGAACTCAAGG
1 GCTCATAACTCAAGAACTCAAGG
*
36283235 GCTCGTAACTCAAGAACTCAA
1 GCTCATAACTCAAGAACTCAA
36283256 AGCTGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.18
Consensus pattern (23 bp):
GCTCATAACTCAAGAACTCAAGG
Found at i:36283511 original size:23 final size:23
Alignment explanation
Indices: 36283485--36283531 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
36283475 GGTGTCATTT
*
36283485 TCAAGCAATTAAAGACATTCAAA
1 TCAAGCAATTAAAGACAATCAAA
*
36283508 TCAAGCAATTCAAGACAATCAAA
1 TCAAGCAATTAAAGACAATCAAA
36283531 T
1 T
36283532 AACCTGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.19, G:0.09, T:0.21
Consensus pattern (23 bp):
TCAAGCAATTAAAGACAATCAAA
Found at i:36283880 original size:46 final size:46
Alignment explanation
Indices: 36283829--36283922 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
36283819 ATAGTGTGGC
36283829 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* * * *
36283875 GTTCATCATATACTAAGGTTCTTATCATTCTTGATAGTGGGTTGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
36283921 GT
1 GT
36283923 CTTTTCTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
Found at i:36286167 original size:15 final size:15
Alignment explanation
Indices: 36286147--36286176 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36286137 CACAGTTTCA
36286147 CTATAGCTTTATAAT
1 CTATAGCTTTATAAT
*
36286162 CTATAGTTTTATAAT
1 CTATAGCTTTATAAT
36286177 ATAAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (15 bp):
CTATAGCTTTATAAT
Found at i:36287645 original size:42 final size:42
Alignment explanation
Indices: 36287599--36287699 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
36287589 CTAAGATCAA
* * *
36287599 CATAGTCGGCATGCTTAACAT-TCTAATCAAATCTCAATTTAT
1 CATAGTCGGCATGCTTAACATGT-AAATCAAATATCAATTAAT
*
36287641 CATAGTCGACATGCTTAACATGTAAATCAAATATCAATTAAT
1 CATAGTCGGCATGCTTAACATGTAAATCAAATATCAATTAAT
* *
36287683 AATAGT-GGCATGATTAA
1 CATAGTCGGCATGCTTAA
36287700 AAATATATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 9 0.18
42 41 0.80
43 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (42 bp):
CATAGTCGGCATGCTTAACATGTAAATCAAATATCAATTAAT
Found at i:36287946 original size:17 final size:17
Alignment explanation
Indices: 36287921--36287955 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36287911 ATAAATTTTT
36287921 TTATCAAATATTAAATC
1 TTATCAAATATTAAATC
* *
36287938 TTATTAAATATTTAATC
1 TTATCAAATATTAAATC
36287955 T
1 T
36287956 CATTTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATCAAATATTAAATC
Found at i:36290137 original size:46 final size:46
Alignment explanation
Indices: 36290086--36290179 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
36290076 ATAGTGTGGC
36290086 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
36290132 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
36290178 GT
1 GT
36290180 CTTTTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:36290603 original size:63 final size:61
Alignment explanation
Indices: 36290515--36290656 Score: 214
Period size: 62 Copynumber: 2.3 Consensus size: 61
36290505 AAAAAAATGT
*
36290515 AAAAAAAGAATTTAGTTTCCATTCAAAATTCAAGAGTGGATATCAAGTTGTAAAAAAAATTTCGT
1 AAAAAAA-AAGTTAG-TTCCATTC-AAATTCAAGAGTGGATATCAAGTTGT-AAAAAAA-TTCGT
36290580 G
61 G
*
36290581 AAAAAAAAA-TTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCTTG
1 AAAAAAAAAGTTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCGTG
36290641 AAAAAAAAAGTTAGTT
1 AAAAAAAAAGTTAGTT
36290657 TTGAACATAC
Statistics
Matches: 74, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
60 14 0.19
61 13 0.18
62 26 0.35
63 8 0.11
64 4 0.05
65 2 0.03
66 7 0.09
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30
Consensus pattern (61 bp):
AAAAAAAAAGTTAGTTCCATTCAAATTCAAGAGTGGATATCAAGTTGTAAAAAAATTCGTG
Found at i:36291596 original size:19 final size:20
Alignment explanation
Indices: 36291564--36291626 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
36291554 GAACAAATCC
*
36291564 AAAATGAAATTGAGAAAAGA
1 AAAAAGAAATTGAGAAAAGA
36291584 AAAAAGAAA-TGAGAGAAA-A
1 AAAAAGAAATTGAGA-AAAGA
36291603 AGAAAA-AACATTGA-AAAAGA
1 A-AAAAGAA-ATTGAGAAAAGA
36291623 AAAA
1 AAAA
36291627 GAGAGTGAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
19 15 0.41
20 19 0.51
21 3 0.08
ACGTcount: A:0.71, C:0.02, G:0.17, T:0.10
Consensus pattern (20 bp):
AAAAAGAAATTGAGAAAAGA
Found at i:36293243 original size:23 final size:23
Alignment explanation
Indices: 36293212--36293255 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
36293202 TGACTTTTCA
36293212 GCTCATAACTCAAGAACTCAAGG
1 GCTCATAACTCAAGAACTCAAGG
*
36293235 GCTCGTAACTCAAGAACTCAA
1 GCTCATAACTCAAGAACTCAA
36293256 AGCTGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.18
Consensus pattern (23 bp):
GCTCATAACTCAAGAACTCAAGG
Found at i:36293511 original size:23 final size:23
Alignment explanation
Indices: 36293485--36293531 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
36293475 GGTGTCATTT
36293485 TCAAGCAATTAAAGACATTCAAA
1 TCAAGCAATTAAAGACATTCAAA
*
36293508 TCAAGCAATTCAAGACATTCAAA
1 TCAAGCAATTAAAGACATTCAAA
36293531 T
1 T
36293532 AACCTGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (23 bp):
TCAAGCAATTAAAGACATTCAAA
Found at i:36293880 original size:46 final size:46
Alignment explanation
Indices: 36293829--36293922 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
36293819 ATAGTGTGGC
36293829 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* * * *
36293875 GTTCATCATATACTAAGGTTCTTATCATTCTTGATAGTGGGTTGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
36293921 GT
1 GT
36293923 CTTTTCTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
Found at i:36296181 original size:9 final size:10
Alignment explanation
Indices: 36296166--36296215 Score: 64
Period size: 10 Copynumber: 4.7 Consensus size: 10
36296156 GTAGGTTCGG
36296166 AAAAAAATTC
1 AAAAAAATTC
36296176 AAAAAAATTC
1 AAAAAAATTC
36296186 AAAAAAAATTC
1 -AAAAAAATTC
*
36296197 GAAAAAAAATTT
1 --AAAAAAATTC
36296209 AAAAAAA
1 AAAAAAA
36296216 GATATATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 17 0.46
11 10 0.27
12 10 0.27
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:36296181 original size:10 final size:11
Alignment explanation
Indices: 36296166--36296215 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
36296156 GTAGGTTCGG
36296166 AAAAAAATTC-
1 AAAAAAATTCA
36296176 AAAAAAATTCA
1 AAAAAAATTCA
36296187 AAAAAAATTCGA
1 AAAAAAATTC-A
*
36296199 AAAAAAATTTA
1 AAAAAAATTCA
36296210 AAAAAA
1 AAAAAA
36296216 GATATATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
10 10 0.27
11 17 0.46
12 10 0.27
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:36297166 original size:6 final size:6
Alignment explanation
Indices: 36297155--36297199 Score: 63
Period size: 6 Copynumber: 7.0 Consensus size: 6
36297145 ATGTTGTAAT
36297155 GAAAAA GAAAAA GAAAAAGA GGAAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA G-AAAA-A -GAAAAA GAAAAA GAAAAA GAAAAA
36297200 AAAGTTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
6 25 0.69
7 5 0.14
8 5 0.14
9 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:36297181 original size:15 final size:15
Alignment explanation
Indices: 36297161--36297189 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36297151 TAATGAAAAA
36297161 GAAAAAGAAAAAGAG
1 GAAAAAGAAAAAGAG
36297176 GAAAAAGAAAAAGA
1 GAAAAAGAAAAAGA
36297190 AAAAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAAAGAG
Found at i:36297181 original size:21 final size:21
Alignment explanation
Indices: 36297155--36297195 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
36297145 ATGTTGTAAT
36297155 GAAAAAGAAAAAGAAAAAGAG
1 GAAAAAGAAAAAGAAAAAGAG
36297176 GAAAAAGAAAAAGAAAAAGA
1 GAAAAAGAAAAAGAAAAAGA
36297196 AAAAAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (21 bp):
GAAAAAGAAAAAGAAAAAGAG
Found at i:36297201 original size:15 final size:15
Alignment explanation
Indices: 36297156--36297203 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
36297146 TGTTGTAATG
36297156 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
* *
36297171 AAGAGGAAAAAG---
1 AAAAAGAAAAAGAAA
36297183 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
36297198 AAAAAG
1 AAAAAG
36297204 TTGAAAAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
12 10 0.38
15 16 0.62
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAA
Found at i:36297201 original size:21 final size:21
Alignment explanation
Indices: 36297156--36297203 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
36297146 TGTTGTAATG
**
36297156 AAAAAGAAAAAGAAAAAGAGG
1 AAAAAGAAAAAGAAAAAGAAA
36297177 AAAAAGAAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAAAAGAAA
36297198 AAAAAG
1 AAAAAG
36297204 TTGAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAGAAA
Found at i:36297344 original size:35 final size:34
Alignment explanation
Indices: 36297280--36297353 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 34
36297270 AATGAAAGTG
*
36297280 TGAGGAAAAAGAGAAAATTGAAAAGGAAAAAAAA
1 TGAGGAAAAAGAGAAAAGTGAAAAGGAAAAAAAA
**
36297314 TGAGAGAAAAAGAGGTAAGTGAACAA-G--AAAAAA
1 TGAG-GAAAAAGAGAAAAGTGAA-AAGGAAAAAAAA
36297347 TGAGGAA
1 TGAGGAA
36297354 TCTGTTTACT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
32 3 0.09
33 10 0.29
34 4 0.11
35 16 0.46
36 2 0.06
ACGTcount: A:0.62, C:0.01, G:0.27, T:0.09
Consensus pattern (34 bp):
TGAGGAAAAAGAGAAAAGTGAAAAGGAAAAAAAA
Found at i:36302611 original size:39 final size:39
Alignment explanation
Indices: 36302555--36302850 Score: 306
Period size: 39 Copynumber: 7.4 Consensus size: 39
36302545 AATGAAATAT
* * *
36302555 TGATTATACTAAATGCTTGCTTAAACGAGCATTATCCAC
1 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
*
36302594 TAATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
* * *
36302633 TGATTATATTGAATGATTGCTCAAATGAGCATTATTCAC
1 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
36302672 TAATTATACTAAATGTTTGAATGTTTTCTCAAACAAAGCATTATCCAC
1 TGA-T-TA-T--A---TTGAATGCTTGCTCAAAC-GAGCATTATCCAC
*
36302720 TGATTATATTGACTGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
* ** *
36302759 TGATTATACTGAATGCTTGCTCAAGTGAGCATTATCCAT
1 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
36302798 TGATTATACTT-AATGCTTACTCAAATGAGCATTACCCAT
1 TGATTATA-TTGAATGCTTGCTCAAACGAGCATTATCCAC
*
36302837 TGATTATACTGAAT
1 TGATTATATTGAAT
36302851 AAGATTTTTT
Statistics
Matches: 217, Mismatches: 29, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.00
39 162 0.75
40 17 0.08
41 2 0.01
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
46 2 0.01
47 16 0.07
48 13 0.06
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (39 bp):
TGATTATATTGAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:36302712 original size:87 final size:86
Alignment explanation
Indices: 36302602--36302773 Score: 254
Period size: 87 Copynumber: 2.0 Consensus size: 86
36302592 ACTAATTATA
* *
36302602 TTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAATGATTGCTCAAATGAGCATTA
1 TTGAATGCTTGCTCAAACAAGCATTATCCACTGATTATATTGAATGATTGCTCAAACGAGCATTA
*
36302667 TTCACTAATTATACTAAATGT
66 TCCACTAATTATACTAAATGT
* * * *
36302688 TTGAATGTTTTCTCAAACAAAGCATTATCCACTGATTATATTGACTGCTTGCTCAAACGAGCATT
1 TTGAATGCTTGCTCAAAC-AAGCATTATCCACTGATTATATTGAATGATTGCTCAAACGAGCATT
* *
36302753 ATCCACTGATTATACTGAATG
65 ATCCACTAATTATACTAAATG
36302774 CTTGCTCAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
86 16 0.21
87 60 0.79
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (86 bp):
TTGAATGCTTGCTCAAACAAGCATTATCCACTGATTATATTGAATGATTGCTCAAACGAGCATTA
TCCACTAATTATACTAAATGT
Found at i:36302807 original size:126 final size:126
Alignment explanation
Indices: 36302582--36302812 Score: 381
Period size: 126 Copynumber: 1.8 Consensus size: 126
36302572 TGCTTAAACG
*
36302582 AGCATTATCCACTAATTATATTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAAT
1 AGCATTATCCACTAATTATATTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATACTGAAT
*
36302647 GATTGCTCAAATGAGCATTATTCACTAATTATACTAAATGTTTGAATGTTTTCTCAAACAA
66 GATTGCTCAAATGAGCATTATCCACTAATTATACTAAATGTTTGAATGTTTTCTCAAACAA
* *
36302708 AGCATTATCCACTGATTATATTGACTGCTTGCTCAAACGAGCATTATCCACTGATTATACTGAAT
1 AGCATTATCCACTAATTATATTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATACTGAAT
* * * * *
36302773 GCTTGCTCAAGTGAGCATTATCCATTGATTATACTTAATG
66 GATTGCTCAAATGAGCATTATCCACTAATTATACTAAATG
36302813 CTTACTCAAA
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 96 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (126 bp):
AGCATTATCCACTAATTATATTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATACTGAAT
GATTGCTCAAATGAGCATTATCCACTAATTATACTAAATGTTTGAATGTTTTCTCAAACAA
Found at i:36304898 original size:14 final size:15
Alignment explanation
Indices: 36304864--36304904 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
36304854 TAGCCCCAAC
*
36304864 AATATAATATCTCAT
1 AATATAATATTTCAT
36304879 AA-ATAATATTTC-T
1 AATATAATATTTCAT
36304892 AATATAA-ATTTCA
1 AATATAATATTTCA
36304905 CGTGAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 8 0.35
14 13 0.57
15 2 0.09
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (15 bp):
AATATAATATTTCAT
Found at i:36305006 original size:66 final size:66
Alignment explanation
Indices: 36304900--36305033 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
36304890 CTAATATAAA
36304900 TTTCACGTGAAATGACTAAAATACTCTTATACGAAAAATTTAAACTTTTACCTCTTTTTTATCTA
1 TTTCACGTGAAATGACTAAAATACTCTTATACGAAAAATTTAAACTTTTACCTCTTTTTTATCTA
36304965 C
66 C
*
36304966 TTTCACGTGAAATGACTAAAATACTCTTATATGAAAAATTTAAACTTTTACCTCTTTTTTATCTA
1 TTTCACGTGAAATGACTAAAATACTCTTATACGAAAAATTTAAACTTTTACCTCTTTTTTATCTA
36305031 C
66 C
36305032 TT
1 TT
36305034 ACTCTTCTCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (66 bp):
TTTCACGTGAAATGACTAAAATACTCTTATACGAAAAATTTAAACTTTTACCTCTTTTTTATCTA
C
Found at i:36316380 original size:31 final size:30
Alignment explanation
Indices: 36316331--36316388 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
36316321 AACTCACACG
* *
36316331 ACATAATAGTTCTCATAAAATAAGCAGTGC
1 ACATAATAATTCACATAAAATAAGCAGTGC
*
36316361 ACATAAGTAATTCACATAAAATGAGCAG
1 ACATAA-TAATTCACATAAAATAAGCAG
36316389 ATCACCTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 6 0.25
31 18 0.75
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.24
Consensus pattern (30 bp):
ACATAATAATTCACATAAAATAAGCAGTGC
Found at i:36316461 original size:17 final size:17
Alignment explanation
Indices: 36316426--36316507 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
36316416 CGTTTATATG
* * *
36316426 AAATAACAGTACATACC
1 AAATAGCAGTTCATTCC
*
36316443 AAATGGCAGTTCATTCC
1 AAATAGCAGTTCATTCC
* **
36316460 AACTAGCAGTTCATAAC
1 AAATAGCAGTTCATTCC
* * * *
36316477 ACATAACAGTTCATGCA
1 AAATAGCAGTTCATTCC
*
36316494 AAATAACAGTTCAT
1 AAATAGCAGTTCAT
36316508 ACTCCATCAT
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (17 bp):
AAATAGCAGTTCATTCC
Found at i:36316595 original size:22 final size:23
Alignment explanation
Indices: 36316570--36316612 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36316560 TTATGAAACT
*
36316570 TATAAG-GGACTTTATCACCACC
1 TATAAGTGGACTCTATCACCACC
36316592 TATAAGTGGACTCTATCACCA
1 TATAAGTGGACTCTATCACCA
36316613 TATATTGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (23 bp):
TATAAGTGGACTCTATCACCACC
Found at i:36317164 original size:18 final size:18
Alignment explanation
Indices: 36317141--36317179 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
36317131 CTCACAATAC
36317141 ACAGTTTGACAAATTAAT
1 ACAGTTTGACAAATTAAT
* *
36317159 ACAGTTTGCCATATTAAT
1 ACAGTTTGACAAATTAAT
36317177 ACA
1 ACA
36317180 AATCACCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (18 bp):
ACAGTTTGACAAATTAAT
Found at i:36317238 original size:36 final size:36
Alignment explanation
Indices: 36317150--36317231 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 36
36317140 CACAGTTTGA
* *** *
36317150 CAAATTAATACAGTTTGCCATATTAATACAAATCAC
1 CAAATTAACACAGTTCATCATAATAATACAAATCAC
* *
36317186 CAAATTAACACAGTTCATCATAATAATATAATTCAC
1 CAAATTAACACAGTTCATCATAATAATACAAATCAC
*
36317222 CAAGTTAACA
1 CAAATTAACA
36317232 TGGTTCACAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (36 bp):
CAAATTAACACAGTTCATCATAATAATACAAATCAC
Found at i:36317249 original size:17 final size:18
Alignment explanation
Indices: 36317227--36317264 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
36317217 TTCACCAAGT
* *
36317227 TAACATGGTTCAC-AATA
1 TAACATAGTACACAAATA
36317244 TAACATAGTACACAAATA
1 TAACATAGTACACAAATA
36317262 TAA
1 TAA
36317265 TTGGCTCGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
TAACATAGTACACAAATA
Found at i:36319613 original size:26 final size:26
Alignment explanation
Indices: 36319578--36319628 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
36319568 ATGTGAAAAG
*
36319578 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
36319604 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
36319629 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:36319634 original size:104 final size:104
Alignment explanation
Indices: 36319499--36319764 Score: 462
Period size: 104 Copynumber: 2.6 Consensus size: 104
36319489 TTGTATATAA
**
36319499 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
36319564 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
36319603 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
36319668 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
** * *
36319707 A-GGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCA
36319765 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
103 52 0.34
104 102 0.66
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:36319716 original size:25 final size:25
Alignment explanation
Indices: 36319683--36319732 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
36319673 TGTGAAAAGG
*
36319683 GGGTTGCTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
36319708 GGGTTGCTAAGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
36319733 TTCAGCGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCGA
Found at i:36326641 original size:26 final size:26
Alignment explanation
Indices: 36326606--36326656 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
36326596 ATGTGAAAAG
*
36326606 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
36326632 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
36326657 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:36326724 original size:102 final size:104
Alignment explanation
Indices: 36326527--36326792 Score: 446
Period size: 102 Copynumber: 2.6 Consensus size: 104
36326517 TTGTATATAA
**
36326527 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-GATCCACCATATCTT
36326592 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
36326631 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGC-GATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGGATCCACCATATCTTT
36326695 GAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
36326734 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-GATCCACCA
36326793 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
102 49 0.32
103 49 0.32
104 45 0.30
105 9 0.06
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGGATCCACCATATCTTT
GAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:36332035 original size:21 final size:21
Alignment explanation
Indices: 36332009--36332050 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36331999 AGAAATATAA
36332009 TTTACAACTTATAAATATTTT
1 TTTACAACTTATAAATATTTT
* * *
36332030 TTTACAATTTTTAATTATTTT
1 TTTACAACTTATAAATATTTT
36332051 CCAAATTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTACAACTTATAAATATTTT
Found at i:36332691 original size:16 final size:17
Alignment explanation
Indices: 36332670--36332707 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
36332660 ATTAAGATCT
* *
36332670 TTACTTTCTT-CTTTAC
1 TTACTTGCTTGCTTAAC
36332686 TTACTTGCTTGCTTAAC
1 TTACTTGCTTGCTTAAC
36332703 TTACT
1 TTACT
36332708 CCTTCGTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.55
Consensus pattern (17 bp):
TTACTTGCTTGCTTAAC
Found at i:36338689 original size:23 final size:22
Alignment explanation
Indices: 36338646--36338689 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
36338636 TTCTAAGCCG
36338646 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
36338669 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
36338690 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:36338798 original size:45 final size:45
Alignment explanation
Indices: 36338734--36338822 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
36338724 AACAGATACT
* * *
36338734 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
36338779 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGT
36338823 TTGGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:36338895 original size:51 final size:50
Alignment explanation
Indices: 36338833--36339019 Score: 205
Period size: 51 Copynumber: 3.7 Consensus size: 50
36338823 TTGGTTCACA
*
36338833 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCGATACACG
* * * ** * * * *
36338884 TAGTAGTCTGCACATAGTACTACACACGTGATCGAAACTGTTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCGATACACG
* * *
36338935 TAGTAGCCTGCACATAATACTACACATGTGACC-TATCATTCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCGATACACG
* *
36338985 TAGTAGCCTACACATAGTACTGCACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
36339020 CACATTCAAT
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
49 1 0.01
50 37 0.35
51 67 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGATACACG
Found at i:36339012 original size:101 final size:101
Alignment explanation
Indices: 36338831--36339015 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
36338821 GTTTGGTTCA
* * *
36338831 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGTCTGCA
1 CATAGTAGCCTGCACATAATACTACACATGTGACCA-TACCATCCGATACACGTAGTAGCCTACA
36338896 CATAGTACTACACACGTGATCGAAACTGTTCGGTACG
65 CATAGTACTACACACGTGATCGAAACTGTTCGGTACG
*
36338933 CATAGTAGCCTGCACATAATACTACACATGTGACC-TATCATTCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAATACTACACATGTGACCATACCA-TCCGATACACGTAGTAGCCTACA
*
36338997 CATAGTACTGCACACGTGA
65 CATAGTACTACACACGTGA
36339016 CCATCACATT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 34 0.44
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAATACTACACATGTGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTGTTCGGTACG
Found at i:36341752 original size:56 final size:50
Alignment explanation
Indices: 36341549--36341790 Score: 256
Period size: 50 Copynumber: 4.8 Consensus size: 50
36341539 ACTACCAATT
* * * ** * * * * *
36341549 CCATATCCCAGATATGGTCTAACATGGGAGTTATCATATAAGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACG
* *
36341599 CCATGTCCCAGACATGGTCTTAC-GGGGAACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATCTCAGTGCCAACG
*
36341649 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACG
* *
36341699 CCATGTCCCAGACATGATCTTACATGGGACCTCTCATAATCTCAATGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC-A-G-TGCCAACG
*
36341755 CCATGTCCCAGAGATGGTCTTACATGGGA--TCTCATC
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC
36341791 CTCTTAATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
49 3 0.02
50 111 0.68
51 6 0.04
53 5 0.03
54 5 0.03
55 1 0.01
56 33 0.20
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACG
Found at i:36348380 original size:79 final size:81
Alignment explanation
Indices: 36348240--36348424 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
36348230 TTGAATGATG
* *
36348240 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36348304 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
36348319 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCC-GGACTAAGAT-CCGAAGGC
*
36348380 AATTGTGCGAGTTACTATA
63 AATTGTGCGAGATACTATA
* *
36348399 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36348425 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.60
80 35 0.38
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36348438 original size:40 final size:40
Alignment explanation
Indices: 36348241--36348424 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
36348231 TGAATGATGT
* * * *
36348241 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36348281 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36348321 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
36348359 TCCAGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36348400 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36348425 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36348446 original size:79 final size:79
Alignment explanation
Indices: 36348293--36348457 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36348283 GGACTAAGAT
* * **
36348293 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36348358 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* *
36348372 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36348435 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
36348451 CCGAAGG
1 CCGAAGG
36348458 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:36361587 original size:14 final size:14
Alignment explanation
Indices: 36361546--36361587 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
36361536 AATATTTATA
*
36361546 ACATGCATTTCAAC
1 ACATACATTTCAAC
*
36361560 ACA-ACATTTAAAC
1 ACATACATTTCAAC
*
36361573 ACATTCATTTCAAC
1 ACATACATTTCAAC
36361587 A
1 A
36361588 TATATATCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.29
Consensus pattern (14 bp):
ACATACATTTCAAC
Found at i:36363270 original size:13 final size:13
Alignment explanation
Indices: 36363252--36363276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36363242 GAGGAATTTT
36363252 AGGTGGTGGTTGA
1 AGGTGGTGGTTGA
36363265 AGGTGGTGGTTG
1 AGGTGGTGGTTG
36363277 TTTGTCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32
Consensus pattern (13 bp):
AGGTGGTGGTTGA
Found at i:36364663 original size:29 final size:29
Alignment explanation
Indices: 36364631--36364699 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
36364621 GCACACGGTT
36364631 GTGTGTTAG-CTCGTGTATGACACACAACC
1 GTGTGTTAGCCT-GTGTATGACACACAACC
* * *
36364660 GTGTGTTAGCCTGTGTGTGACATACGACC
1 GTGTGTTAGCCTGTGTATGACACACAACC
36364689 GTGTGTTAGCC
1 GTGTGTTAGCC
36364700 CATGTACAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (29 bp):
GTGTGTTAGCCTGTGTATGACACACAACC
Found at i:36369262 original size:22 final size:22
Alignment explanation
Indices: 36369237--36369309 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 22
36369227 AACACACCAT
36369237 TTGTGGATAAGCCACCACATAA
1 TTGTGGATAAGCCACCACATAA
* *
36369259 TTGTCGAT-AGACGACCACATAACACA
1 TTGTGGATAAG-CCACCACAT---A-A
*
36369285 TTGTGGACAAGCCACCACATAA
1 TTGTGGATAAGCCACCACATAA
36369307 TTG
1 TTG
36369310 CTAATAACGA
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
21 2 0.05
22 19 0.47
23 1 0.03
25 1 0.03
26 15 0.38
27 2 0.05
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (22 bp):
TTGTGGATAAGCCACCACATAA
Found at i:36369300 original size:48 final size:47
Alignment explanation
Indices: 36369237--36369327 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 47
36369227 AACACACCAT
* *
36369237 TTGTGGATAAGCCACCACATAATTG-TCGATAGACGACCACATAACACA
1 TTGTGGACAAGCCACCACATAATTGCT-AATA-ACGACCACATAACACA
36369285 TTGTGGACAAGCCACCACATAATTGCTAATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAATTGCTAATAACGACCACATAA
36369328 TCCATATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
47 12 0.30
48 27 0.68
49 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.21
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAATTGCTAATAACGACCACATAACACA
Found at i:36374418 original size:22 final size:21
Alignment explanation
Indices: 36374393--36374438 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
36374383 TGATAAACTT
36374393 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
36374415 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
36374436 TAA
1 TAA
36374439 ACTTAGCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 11 0.50
23 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:36392279 original size:20 final size:21
Alignment explanation
Indices: 36392256--36392299 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
36392246 ATTTCAATTT
36392256 AGCTTAATT-TTAGCTCAATG
1 AGCTTAATTCTTAGCTCAATG
**
36392276 AGC-TCGTTCTTAGCTCAATG
1 AGCTTAATTCTTAGCTCAATG
36392296 AGCT
1 AGCT
36392300 CGTTTTTAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (21 bp):
AGCTTAATTCTTAGCTCAATG
Found at i:36392300 original size:20 final size:20
Alignment explanation
Indices: 36392265--36392310 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
36392255 TAGCTTAATT
36392265 TTAGCTCAATGAGCTCGTTC
1 TTAGCTCAATGAGCTCGTTC
*
36392285 TTAGCTCAATGAGCTCGTTT
1 TTAGCTCAATGAGCTCGTTC
36392305 TTAGCT
1 TTAGCT
36392311 TACTTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (20 bp):
TTAGCTCAATGAGCTCGTTC
Found at i:36397040 original size:79 final size:80
Alignment explanation
Indices: 36396900--36397126 Score: 295
Period size: 79 Copynumber: 2.9 Consensus size: 80
36396890 TGACCATATT
* * *
36396900 CGGACTAAGATCCGAAGGTA-TTGTGCGAGATACTAATTCCAGGCTAA--CCCGAAGGCATTTGT
1 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGT
36396962 ACGAGTTACTAAATC
66 ACGAGTTACTAAATC
* *
36396977 CGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAATCC-GGTTAAGTCCCGAAGGCATTTGT
1 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGT
*
36397041 GCGAGTTACTAAATC
66 ACGAGTTACTAAATC
** * *
36397056 CGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCAGGCTAAGTCCCGAAGGCATTT
*
36397119 GAACGAGT
64 GTACGAGT
36397127 AGCTATATCC
Statistics
Matches: 131, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
77 23 0.18
78 19 0.15
79 62 0.47
80 27 0.21
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGT
ACGAGTTACTAAATC
Found at i:36397086 original size:119 final size:116
Alignment explanation
Indices: 36396911--36397152 Score: 283
Period size: 119 Copynumber: 2.1 Consensus size: 116
36396901 GGACTAAGAT
* *
36396911 CCGAAGGTATTGTGCGAGATACTAATTCCAGGCTAACCCGAAGGCATTTGTACGAGTTACTA-AA
1 CCGAAGGCATTGTGCGAGATACTAAATCCAGGCTAACCCGAAGGCATTTGTACGAGTTACTATAA
** *
36396975 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAGTC
66 -CCGGACTAAG-TCCCAAAGGCATTTGAACGAG-TAGCTAAATCCGGTTAAATC
* * * *
36397027 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCA-TTGTGCGAGATACTAAATCCAGGCTAA--CCCGAAGGCATTTGTACGAGTTACTA
* * * * *
36397092 TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
63 TAACCGGACTAAGTCCCAAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
36397146 CCGAAGG
1 CCGAAGG
36397153 TACGTGATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
116 8 0.08
117 23 0.22
118 3 0.03
119 70 0.66
120 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (116 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCAGGCTAACCCGAAGGCATTTGTACGAGTTACTATAA
CCGGACTAAGTCCCAAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:36397126 original size:40 final size:40
Alignment explanation
Indices: 36396859--36397119 Score: 279
Period size: 40 Copynumber: 6.7 Consensus size: 40
36396849 TTGAATGATG
* * * *
36396859 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
36396898 TTCGGACTAAGAT-CCGAAGGTA-TTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36396937 TCCAGGCTAA--CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36396975 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36397015 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36397054 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36397095 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36397120 AACGAGTAGC
Statistics
Matches: 187, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
37 8 0.04
38 23 0.12
39 55 0.29
40 99 0.53
41 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36397141 original size:79 final size:77
Alignment explanation
Indices: 36396905--36397152 Score: 272
Period size: 79 Copynumber: 3.2 Consensus size: 77
36396895 ATATTCGGAC
* * *
36396905 TAAGATCCGAAGGTA-TTGTGCGAGATACTAATTCCAGGCTAA--CCCGAAGGCATTTGTACGAG
1 TAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC-GGCTAAGTCCCGAAGGCATTTGTACGAG
*
36396967 TTACTAAATCCGGAC
64 TTACTAAATCCGG-T
* * *
36396982 TAAGATCCAAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGT
1 TAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGCTAAGTCCCGAAGGCATTTGTACGAGT
36397047 TACTAAATCCGGGT
65 TACTAAATCC-GGT
* *
36397061 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGCTAAGTCCCGAAGGCATTTGTACGA
*
36397125 G-TAGCTATATCCGGT
63 GTTA-CTAAATCCGGT
*
36397140 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
36397153 TACGTGATTT
Statistics
Matches: 148, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
77 18 0.12
78 19 0.13
79 73 0.49
80 38 0.26
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (77 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGCTAAGTCCCGAAGGCATTTGTACGAGTT
ACTAAATCCGGT
Found at i:36405061 original size:40 final size:40
Alignment explanation
Indices: 36404928--36405054 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 40
36404918 GGACTAATCC
36404928 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
36404968 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
* *
36405008 GCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAG
1 GCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAG
36405048 GCATTTG
1 GCATTTG
36405055 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
40 82 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
Found at i:36405061 original size:80 final size:79
Alignment explanation
Indices: 36404928--36405087 Score: 216
Period size: 80 Copynumber: 2.0 Consensus size: 79
36404918 GGACTAATCC
* **
36404928 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCC
1 GCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC
*
36404992 GGGTTAAGTCCCGAAG
65 -GGTTAAATCCCGAAG
* *
36405008 GCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC
1 GCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCC
*
36405072 GGTTAAATTCCGAAG
65 GGTTAAATCCCGAAG
36405087 G
1 G
36405088 TACGTGATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.23
80 53 0.75
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
GCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCG
GTTAAATCCCGAAG
Found at i:36407959 original size:20 final size:20
Alignment explanation
Indices: 36407936--36407990 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
36407926 AGTTCAATTC
36407936 AGCTCAATTTTAGCTCAATG
1 AGCTCAATTTTAGCTCAATG
*
36407956 AGCTC-GTTCTTAGCTCAATG
1 AGCTCAATT-TTAGCTCAATG
* *
36407976 AGATCATTTTTAGCT
1 AGCTCAATTTTAGCT
36407991 TACTTTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTTAGCTCAATG
Found at i:36412578 original size:50 final size:50
Alignment explanation
Indices: 36412520--36412618 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
36412510 TATTGAGGTT
* * * *
36412520 ATGAGAGGTCCCACGTAAGACCATGTTTAGAACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACATAAGACCATGTCTAGAACATGGCATAGGCACCGAG
* * *
36412570 ATGAGAGGTCCCTCATATGACCATGTCTAGGACATGGCATAGGCACCGA
1 ATGAGAGGTCCCACATAAGACCATGTCTAGAACATGGCATAGGCACCGA
36412619 TAAGAGAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACATAAGACCATGTCTAGAACATGGCATAGGCACCGAG
Found at i:36420580 original size:26 final size:25
Alignment explanation
Indices: 36420534--36420610 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
36420524 TTTCTTAACT
*
36420534 CAATTTTACCCCAGTAAAATTTTTA
1 CAATTTTACCCCAGTAAAATTTTGA
*
36420559 CGATTTTACTCCC-GATAAAATTTTGA
1 CAATTTTAC-CCCAG-TAAAATTTTGA
* *
36420585 CAATTTTACCCCTGGTAAAAATTTGA
1 CAATTTTACCCC-AGTAAAATTTTGA
36420611 GAAAATTCGT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 12 0.27
26 31 0.70
27 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (25 bp):
CAATTTTACCCCAGTAAAATTTTGA
Found at i:36423958 original size:45 final size:45
Alignment explanation
Indices: 36423876--36423994 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
36423866 GGTGGATAAG
* * *
36423876 CACATAGC-ACCATCC-TTATAATCAATTATATT-TGGTGGAATCAG
1 CACATAGCAACCA-CCTTTATAATCAATGAT-TTCCGGTGGAATCAA
* ** *
36423920 CATATAGCAACCACCTTTATTTTCAATGATTTCCGGTGGAGTCAA
1 CACATAGCAACCACCTTTATAATCAATGATTTCCGGTGGAATCAA
36423965 CACATAGCAACCACCTTTATAATCAATGAT
1 CACATAGCAACCACCTTTATAATCAATGAT
36423995 ACTCAGTACA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 11 0.18
45 51 0.82
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31
Consensus pattern (45 bp):
CACATAGCAACCACCTTTATAATCAATGATTTCCGGTGGAATCAA
Found at i:36429212 original size:45 final size:45
Alignment explanation
Indices: 36429132--36429333 Score: 233
Period size: 45 Copynumber: 4.5 Consensus size: 45
36429122 CAGCACATTG
* * ** *
36429132 CCACCCTTATAATCAATTATATTCGGTGGAATCAACATATAGCAA
1 CCACCTTTATAATCAATGATACCCGGTGCAATCAACATATAGCAA
* ** ** *
36429177 CCACATTTATTTTCAATGATTTCCGGTGCAGTCAACATATAGCAA
1 CCACCTTTATAATCAATGATACCCGGTGCAATCAACATATAGCAA
* * *
36429222 CCACCTTTATAATCAATGGTACCCGGTGGAATCAACACATAGCAA
1 CCACCTTTATAATCAATGATACCCGGTGCAATCAACATATAGCAA
* * * * *
36429267 CCACCTTTATAATCAATGGTACCAGGTGGAATCAGCACATAGCAA
1 CCACCTTTATAATCAATGATACCCGGTGCAATCAACATATAGCAA
36429312 CCACCTTTATAATCAATGATAC
1 CCACCTTTATAATCAATGATAC
36429334 TCAGTACACG
Statistics
Matches: 136, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.27
Consensus pattern (45 bp):
CCACCTTTATAATCAATGATACCCGGTGCAATCAACATATAGCAA
Found at i:36444867 original size:33 final size:32
Alignment explanation
Indices: 36444816--36444878 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
36444806 TAATGATATA
* *
36444816 TTGTTATTATATTGTTTTTTTATAGTTAAATTG
1 TTGTTATTATAATGTTTTTTTACA-TTAAATTG
36444849 TTGTT-TTATAATGTTTTTTTTACATTAAAT
1 TTGTTATTATAATG-TTTTTTTACATTAAAT
36444879 GGATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (32 bp):
TTGTTATTATAATGTTTTTTTACATTAAATTG
Found at i:36444877 original size:32 final size:33
Alignment explanation
Indices: 36444816--36444878 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
36444806 TAATGATATA
* *
36444816 TTGTTATTATATTGTTTTTTTATAGTTAAATTG
1 TTGTTATTATAATGTTTTTTTATAATTAAATTG
36444849 TTGTT-TTATAATGTTTTTTT-TACATTAAAT
1 TTGTTATTATAATGTTTTTTTATA-ATTAAAT
36444879 GGATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 2 0.07
32 20 0.74
33 5 0.19
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (33 bp):
TTGTTATTATAATGTTTTTTTATAATTAAATTG
Found at i:36451696 original size:5 final size:5
Alignment explanation
Indices: 36451682--36451730 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
36451672 ATTGACTTTT
* * * *
36451682 TACCC AACCC TACCC TATCC TATCC TACCC TACCC TACCT TACCC TACC
1 TACCC TACCC TACCC TACCC TACCC TACCC TACCC TACCC TACCC TACC
36451731 ATTACTTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.22, C:0.53, G:0.00, T:0.24
Consensus pattern (5 bp):
TACCC
Found at i:36455209 original size:26 final size:24
Alignment explanation
Indices: 36455171--36455221 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
36455161 TAAGTTACTT
36455171 TTATTTTTATTAAAAATTAAAATAAA
1 TTATTTTTATTAAAAA-TAAAA-AAA
36455197 TTATCTTTT-TTAAAAATAAAAAAA
1 TTAT-TTTTATTAAAAATAAAAAAA
36455221 T
1 T
36455222 GATATATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.17
25 5 0.21
26 11 0.46
27 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TTATTTTTATTAAAAATAAAAAAA
Found at i:36458455 original size:13 final size:13
Alignment explanation
Indices: 36458437--36458465 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
36458427 TATTATTTAG
36458437 TCAAGAAGTCATT
1 TCAAGAAGTCATT
36458450 TCAAGAAGTCATT
1 TCAAGAAGTCATT
36458463 TCA
1 TCA
36458466 CTAAGATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (13 bp):
TCAAGAAGTCATT
Found at i:36460540 original size:54 final size:54
Alignment explanation
Indices: 36460482--36460596 Score: 221
Period size: 54 Copynumber: 2.1 Consensus size: 54
36460472 GTTCTGTTTC
36460482 AATTTCACTCATTTACATAACATTACAACAATTTATTTTGTAAGCACAGTACGA
1 AATTTCACTCATTTACATAACATTACAACAATTTATTTTGTAAGCACAGTACGA
36460536 AATTTCACTCATTTACATAACATTACAACAATTTATTTTGTAAGCACAGTACGA
1 AATTTCACTCATTTACATAACATTACAACAATTTATTTTGTAAGCACAGTACGA
*
36460590 AACTTCA
1 AATTTCA
36460597 TCACTCCAGT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (54 bp):
AATTTCACTCATTTACATAACATTACAACAATTTATTTTGTAAGCACAGTACGA
Found at i:36460674 original size:21 final size:21
Alignment explanation
Indices: 36460634--36460674 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
36460624 TCACACTTCA
*
36460634 ATCACATACTCATATTTGTTT
1 ATCACATACTCATATCTGTTT
36460655 ATCA-ATACTCATATCCTGTT
1 ATCACATACTCATAT-CTGTT
36460675 GAACACGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
ATCACATACTCATATCTGTTT
Found at i:36460869 original size:51 final size:49
Alignment explanation
Indices: 36460743--36460931 Score: 189
Period size: 51 Copynumber: 3.8 Consensus size: 49
36460733 ATTATTATCA
* * * * * * *
36460743 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACATGTAACCAAAC-C
* * * *
36460793 TTCGGTTCACGTAGTAGCCTACACATGGTACTACACATGTAACCAAAGCC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACATGTAACCAAA-CC
* * *
36460843 TTCCGGTACACATAGTAGCCTGCACATATTACTACACATGTAACCATTATC
1 TT-CGGTACACATAGTAGCCTGCACATAGTACTACACATGTAACCA-AACC
* *
36460894 TATCGATACACATAGTAGCCTGCACTTAGTACTACACA
1 T-TCGGTACACATAGTAGCCTGCACATAGTACTACACA
36460932 CGTGTTTATA
Statistics
Matches: 117, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 42 0.36
51 73 0.62
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (49 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACATGTAACCAAACC
Found at i:36467504 original size:27 final size:27
Alignment explanation
Indices: 36467474--36467576 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
36467464 TCATCTCCTA
**
36467474 GGGGTATAACAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
36467501 GGGGTATTTTAGTCATTTTAACATATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
36467528 GGGGTATTTCGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
36467555 GGGGTATTTCAATTATTTTACC
1 GGGGTATTTCAGTCATTTTACC
36467577 TATTTTGGGG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:36477212 original size:22 final size:22
Alignment explanation
Indices: 36477184--36477256 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
36477174 ATCAGTGTTA
36477184 TCAGTGGCAGTTTATCTATAAT
1 TCAGTGGCAGTTTATCTATAAT
*
36477206 TCAGTGGTAGTTTATCTGCA-AAT
1 TCAGTGGCAGTTTATCT--ATAAT
* * *
36477229 T-AGTGGCAGCTTATCTGTAAA
1 TCAGTGGCAGTTTATCTATAAT
36477250 TCAGTGG
1 TCAGTGG
36477257 TGGCATGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 3 0.07
22 34 0.81
23 4 0.10
24 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (22 bp):
TCAGTGGCAGTTTATCTATAAT
Found at i:36477636 original size:29 final size:29
Alignment explanation
Indices: 36477603--36477661 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
36477593 TTTTATGGCT
36477603 ATGGACTATTT-TATTATTTTGGGACTTTC
1 ATGGACT-TTTATATTATTTTGGGACTTTC
*
36477632 ATGGACTTTTAAATTTTATTTTGGGACTTT
1 ATGGACTTTT--ATATTATTTTGGGACTTT
36477662 AATTTGTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 7 0.27
31 16 0.62
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (29 bp):
ATGGACTTTTATATTATTTTGGGACTTTC
Found at i:36478850 original size:135 final size:134
Alignment explanation
Indices: 36478596--36478857 Score: 470
Period size: 135 Copynumber: 1.9 Consensus size: 134
36478586 TGGTGTTAGA
* * *
36478596 TTTTGTCGCACTTTATCACAATACAGTGTGATAACTTTTTTCCATATAAGGAACGACTTTGAGAC
1 TTTTGCCGCACTTTATCACAATACAGTGTGATAACTTTTTTCCACATAAGGAACGACTATGAGAC
*
36478661 CCATAAGAAACTTCTGAAGCCATATTGCTTCTTCTATCTTCTCGAAAGAAGCTATATATTTGAGA
66 CCATAAGAAACTTCTGAAGCCATATTGCTTCTTCTATCTTCTCAAAAGAAGCTATATATTTGAGA
36478726 TAAC
131 TAAC
36478730 TTTTGCCGCACTATTATCACAATACAGTGTGATAACTTTTTTCCACATAAGGAACGACTATGAGA
1 TTTTGCCGCACT-TTATCACAATACAGTGTGATAACTTTTTTCCACATAAGGAACGACTATGAGA
*
36478795 CCCATAAGGAACTTCTGAAGCCATATTGCTTCTTCTATCTTCTCAAAAGAAGCTATATATTTG
65 CCCATAAGAAACTTCTGAAGCCATATTGCTTCTTCTATCTTCTCAAAAGAAGCTATATATTTG
36478858 TACACTCAAA
Statistics
Matches: 122, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
134 11 0.09
135 111 0.91
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (134 bp):
TTTTGCCGCACTTTATCACAATACAGTGTGATAACTTTTTTCCACATAAGGAACGACTATGAGAC
CCATAAGAAACTTCTGAAGCCATATTGCTTCTTCTATCTTCTCAAAAGAAGCTATATATTTGAGA
TAAC
Found at i:36482406 original size:7 final size:7
Alignment explanation
Indices: 36482394--36482419 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36482384 CATTACTAAA
36482394 TTATTCT
1 TTATTCT
36482401 TTATTCT
1 TTATTCT
36482408 TTATTCT
1 TTATTCT
36482415 TTATT
1 TTATT
36482420 TGTGATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTCT
Found at i:36487485 original size:30 final size:30
Alignment explanation
Indices: 36487450--36487506 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
36487440 AGGTTGCATC
*
36487450 ACAGCCCATGATCTTAAAAGGTTAATTGTA
1 ACAGCCCATAATCTTAAAAGGTTAATTGTA
36487480 ACAGCCCATAATCTTAAAAGGTTAATT
1 ACAGCCCATAATCTTAAAAGGTTAATT
36487507 AGAAACAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (30 bp):
ACAGCCCATAATCTTAAAAGGTTAATTGTA
Found at i:36500140 original size:40 final size:40
Alignment explanation
Indices: 36500057--36500242 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
36500047 TTGAATGATG
* * * *
36500057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36500097 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36500137 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36500177 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36500218 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36500243 AATGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36500260 original size:80 final size:79
Alignment explanation
Indices: 36500057--36500275 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
36500047 TTGAATGATG
** * * * * *
36500057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGG-TTAA-ATCCCGAAGGCAT
36500120 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** *
36500137 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAATCCCGAAGGCATTT
36500202 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * *
36500218 -CCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAAATCCCGAAGG
36500276 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
79 17 0.14
80 91 0.76
81 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:36505673 original size:18 final size:19
Alignment explanation
Indices: 36505650--36505698 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
36505640 GTTGTAAAGT
*
36505650 TTTATTTTTATTTATTTA-
1 TTTATTTTTATTTACTTAG
36505668 TTTATTTATT-TTTACTTAG
1 TTTATTT-TTATTTACTTAG
36505687 TTTAATTTTTAT
1 TTT-ATTTTTAT
36505699 GTAAATATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 7 0.27
20 5 0.19
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTATTTTTATTTACTTAG
Found at i:36505678 original size:22 final size:22
Alignment explanation
Indices: 36505649--36505698 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
36505639 AGTTGTAAAG
* *
36505649 TTTTATTTTTATTTA-TTTATT
1 TTTTATTTTTACTTAGTTTAAT
36505670 TATTTATTTTTACTTAGTTTAAT
1 T-TTTATTTTTACTTAGTTTAAT
36505693 TTTTAT
1 TTTTAT
36505699 GTAAATATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTTACTTAGTTTAAT
Found at i:36512440 original size:40 final size:40
Alignment explanation
Indices: 36512357--36512619 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36512347 TTGAATGCTG
* * * * * *
36512357 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
36512397 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
36512437 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
36512477 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
36512517 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36512557 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36512596 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36512620 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:36512639 original size:79 final size:80
Alignment explanation
Indices: 36512396--36512654 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
36512386 AAGTGAATAT
* * * * * * *
36512396 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
36512460 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
36512476 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
36512541 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
36512556 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
36512620 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
36512635 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
36512655 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:36525840 original size:27 final size:27
Alignment explanation
Indices: 36525810--36525987 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
36525800 ATATTGAGCC
* * *
36525810 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
36525837 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
36525864 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
36525892 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
36525919 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
36525946 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
36525973 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36525988 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:36525903 original size:55 final size:55
Alignment explanation
Indices: 36525810--36525987 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
36525800 ATATTGAGCC
* * *
36525810 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
36525864 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
36525919 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
36525973 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36525988 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:36525949 original size:82 final size:81
Alignment explanation
Indices: 36525831--36525986 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36525821 TGCTATACAA
* * *
36525831 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
36525896 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
36525913 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
36525977 CACTTAGTGC
65 CACTTAGTGC
36525987 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36530622 original size:40 final size:40
Alignment explanation
Indices: 36530538--36530721 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
36530528 TTGAATGCTG
* * * *
36530538 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
36530577 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
36530618 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
36530658 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
*
36530698 TCCGGGTTAAGTTCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36530722 GAATGAGTTA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 110 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:36530675 original size:80 final size:81
Alignment explanation
Indices: 36530538--36530718 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
36530528 TTGAATGCTG
* * *
36530538 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
36530602 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
36530618 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
36530679 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
*
36530698 TCCGGGTTAAGTTCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
36530719 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:36533655 original size:21 final size:21
Alignment explanation
Indices: 36533629--36533679 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
36533619 TTGAATGATA
*
36533629 GTTTTGTTAAGAAATTTTAAC
1 GTTTTGATAAGAAATTTTAAC
*
36533650 GTTTTGATAAGAAATTTTAAT
1 GTTTTGATAAGAAATTTTAAC
*
36533671 GTTTCGATA
1 GTTTTGATA
36533680 GTTAATTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (21 bp):
GTTTTGATAAGAAATTTTAAC
Found at i:36536380 original size:17 final size:18
Alignment explanation
Indices: 36536358--36536392 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36536348 TGATGAATGA
36536358 AATATG-TTAAGTAAATT
1 AATATGTTTAAGTAAATT
*
36536375 AATATGTTTAGGTAAATT
1 AATATGTTTAAGTAAATT
36536393 TTATGTTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (18 bp):
AATATGTTTAAGTAAATT
Found at i:36538496 original size:24 final size:23
Alignment explanation
Indices: 36538460--36538529 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 23
36538450 CATATTTTCG
* *
36538460 AAATCATTGTGTATTATTATTCTA
1 AAATTATTATGTATTATTATT-TA
*
36538484 AAATTATTATGTATTATTACTTA
1 AAATTATTATGTATTATTATTTA
*
36538507 AAAGTTA-TATTATATTATTATTT
1 AAA-TTATTA-TGTATTATTATTT
36538530 TTTCATTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
23 7 0.18
24 32 0.82
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (23 bp):
AAATTATTATGTATTATTATTTA
Found at i:36544110 original size:6 final size:7
Alignment explanation
Indices: 36544093--36544127 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
36544083 CTGAGTCAAA
36544093 AAAAATG
1 AAAAATG
36544100 AAAAATG
1 AAAAATG
36544107 -AAAATG
1 AAAAATG
36544113 AAGAAATG
1 AA-AAATG
36544121 AAAAATG
1 AAAAATG
36544128 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 6 0.23
7 13 0.50
8 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:36545667 original size:44 final size:44
Alignment explanation
Indices: 36545604--36545692 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
36545594 TAGATCGCAT
* *
36545604 CAGATTGAAGCCAGAAATCTTATCTCCCTAAGATTATAGCGGAG
1 CAGATGGAAGCCAGAAATCTTATCTCCCTAAGATTACAGCGGAG
* * * *
36545648 CAGATGGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAG
1 CAGATGGAAGCCAGAAATCTTATCTCCCTAAGATTACAGCGGAG
36545692 C
1 C
36545693 GAATTTAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
CAGATGGAAGCCAGAAATCTTATCTCCCTAAGATTACAGCGGAG
Found at i:36545723 original size:142 final size:142
Alignment explanation
Indices: 36545476--36546030 Score: 905
Period size: 142 Copynumber: 3.9 Consensus size: 142
36545466 CTGAAGAAGC
* * *
36545476 AAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCGAGTAATCCTATCTCCCTGAGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATT
*
36545541 ACAGAGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCATCA
36545606 GATTGAAGCCAG
131 GATTGAAGCCAG
* * *
36545618 AAATCTTATCTCCCTAAGATTATAGCGGAGCAGATGGAAGCTAGTAATCTTATCTCCCTGAGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATT
* *
36545683 ACAGTGGAGCGAATTTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA-AAGTAGATCGCATC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAA-TAGATCGCATC
36545747 AGATTGAAGCCAG
130 AGATTGAAGCCAG
* * * * *
36545760 ACATCTTATCTCTCTGAGATTATAGCCGAGCAGATGGAAGCTAGTAATCCTATCTCCCTAAGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATT
* * *
36545825 ACAGTGGAGCGGATTTAAATAAAGGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCATCA
36545890 GATTGAAGCCAG
131 GATTGAAGCCAG
* *
36545902 AAATCTTATCTCCCTGAGATTACAGCGTAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATT
* *
36545967 ACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCATC
36546031 GGGTCTTATC
Statistics
Matches: 383, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
141 2 0.01
142 380 0.99
143 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCATCA
GATTGAAGCCAG
Found at i:36546000 original size:44 final size:44
Alignment explanation
Indices: 36545902--36546024 Score: 115
Period size: 44 Copynumber: 2.8 Consensus size: 44
36545892 TTGAAGCCAG
* * ** *
36545902 AAATCTTATCTCCCTGAGATTACAGCGTAGCAGATTGAAGCTAG
1 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAA
* * *
36545946 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAA
1 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAA
* * *
36545989 AAGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 AA-ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGAT
36546025 CGCATCGGGT
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
43 6 0.10
44 57 0.90
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAA
Found at i:36546163 original size:50 final size:50
Alignment explanation
Indices: 36546109--36546372 Score: 269
Period size: 50 Copynumber: 5.3 Consensus size: 50
36546099 GCAGTGGAAC
* *
36546109 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
36546159 AGATTAAAGCTACAGCAGCGAATCTTACTT-CCCTAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGA-CATTGCAGTTAAAA
*
36546209 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * ** * * * ** ** *
36546259 AGATTAAAGCTACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
36546309 AGATTAAAGCCACATCAGTGAATCTTGCTTCCTCGACATTACAGTTAAAA
1 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
36546359 AGATTAAAGCCACA
1 AGATTAAAGCCACA
36546373 ATGGCGAATC
Statistics
Matches: 162, Mismatches: 50, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
49 4 0.02
50 154 0.95
51 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:36546202 original size:100 final size:100
Alignment explanation
Indices: 36546079--36546388 Score: 521
Period size: 100 Copynumber: 3.1 Consensus size: 100
36546069 AGAATTACAG
36546079 ATCTTATCTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 ATCTTA-CTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* *
36546144 ACATTGTAGTTAAAAAGATTAAAGCTACAGCAGCGA
65 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
36546180 ATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
1 ATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
*
36546245 CATTGCAGTTAAAAAGATTAAAGCTACAACAACGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
* * *
36546280 ATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCTCGA
1 ATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
* * **
36546345 CATTACAGTTAAAAAGATTAAAGCCACAATGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
36546380 ATCTTACTT
1 ATCTTACTT
36546389 TCCAAAAGTT
Statistics
Matches: 198, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
100 192 0.97
101 6 0.03
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (100 bp):
ATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
Found at i:36548119 original size:24 final size:24
Alignment explanation
Indices: 36548065--36548119 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
36548055 CATATTTTCG
* * *
36548065 AAATCATTGTGTATTATTATTCTA
1 AAATTATTATGTATTATTACTCTA
36548089 AAATTATTATGTATTATTACT-TA
1 AAATTATTATGTATTATTACTCTA
36548112 AAAGTTAT
1 AAA-TTAT
36548120 ACTATATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.49
Consensus pattern (24 bp):
AAATTATTATGTATTATTACTCTA
Found at i:36557486 original size:11 final size:12
Alignment explanation
Indices: 36557472--36557508 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
36557462 TTTTTTTTCC
36557472 TTTTTTTCG-AT
1 TTTTTTTCGAAT
36557483 TTTTTTT-GAAT
1 TTTTTTTCGAAT
36557494 TTTTTTTCTGAAT
1 TTTTTTTC-GAAT
36557507 TT
1 TT
36557509 CTTCTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.04
11 16 0.70
13 6 0.26
ACGTcount: A:0.14, C:0.05, G:0.08, T:0.73
Consensus pattern (12 bp):
TTTTTTTCGAAT
Found at i:36557605 original size:13 final size:13
Alignment explanation
Indices: 36557587--36557619 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
36557577 CCAACTCAAA
36557587 TTTTTTTTTGA-T
1 TTTTTTTTTGACT
36557599 TTTTTTTTTGACT
1 TTTTTTTTTGACT
36557612 TTTTTTTT
1 TTTTTTTT
36557620 CGTTACGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTGACT
Found at i:36561945 original size:20 final size:20
Alignment explanation
Indices: 36561922--36561960 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36561912 GCTACTCATA
36561922 TTTTTA-AAAACTTACTAGAG
1 TTTTTAGAAAACTTA-TAGAG
*
36561942 TTTTTAGAACACTTATAGA
1 TTTTTAGAAAACTTATAGA
36561961 ACCGGCGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTTTAGAAAACTTATAGAG
Found at i:36567506 original size:27 final size:27
Alignment explanation
Indices: 36567474--36567533 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
36567464 ATAAGTTAAA
36567474 TTAATTATTTTAAGTTATTTGAATGGT
1 TTAATTATTTTAAGTTATTTGAATGGT
36567501 TTAATTATTTTAAGTTATTTGAATGGT
1 TTAATTATTTTAAGTTATTTGAATGGT
36567528 TTAATT
1 TTAATT
36567534 GAGTGAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (27 bp):
TTAATTATTTTAAGTTATTTGAATGGT
Found at i:36575739 original size:53 final size:52
Alignment explanation
Indices: 36575655--36575969 Score: 348
Period size: 53 Copynumber: 6.0 Consensus size: 52
36575645 ACATGCCAAA
* * *
36575655 AAATGGAAGCCTTTGTAGCAATCTATGAAATGGAAGTCTTTGTGGCGTATCTG
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGC-TATCTG
* *
36575708 AAATGGAAGCCTTTGTGGCAATATATCAAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGCTATC--TG
* * * *
36575762 AAATGGAAACC-TTATGGC-ATATCTGAAATGGAAGCCTTTGTGGCAATCCATG
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGCTAT-C-TG
* * *
36575814 AAATGAAAGCCTTTGTGGC-ATATCTGAAATGGAAGTCTTTGTGGCATATCTG
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGC-TATCTG
* * * *
36575866 AAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAGCCTTTGTGTCATATCTA
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGC-TATCTG
* * * * * *
36575919 AAATGGAAGACTTTTTGGCAATTTATGAAATGAAAGCCTTTATGGCGATCT
1 AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGCTATCT
36575970 ATGGAAAGGG
Statistics
Matches: 227, Mismatches: 29, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
52 66 0.29
53 147 0.65
54 14 0.06
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (52 bp):
AAATGGAAGCCTTTGTGGCAATATATGAAATGGAAGCCTTTGTGGCTATCTG
Found at i:36575824 original size:79 final size:81
Alignment explanation
Indices: 36575655--36575972 Score: 400
Period size: 79 Copynumber: 4.0 Consensus size: 81
36575645 ACATGCCAAA
* * * *
36575655 AAATGGAAGCCTTTGTAGCA-ATCTATGAAATGGAAGTCTTTGTGGCGTATCTGAAATGGAAGCC
1 AAATGAAAGCCTTTGTGGCATATCTATGAAATGGAAGACTTTGTGGCATATCTGAAATGGAAGCC
* *
36575719 TTTGTGGCAATATATC
66 TTTGTGGCAATCTATG
* * *
36575735 AAATGGAAGCCTTTGTGGCA-ATCTATGAAATGGAA-ACCTTATGGCATATCTGAAATGGAAGCC
1 AAATGAAAGCCTTTGTGGCATATCTATGAAATGGAAGACTTTGTGGCATATCTGAAATGGAAGCC
*
36575798 TTTGTGGCAATCCATG
66 TTTGTGGCAATCTATG
*
36575814 AAATGAAAGCCTTTGTGGCATATC--TGAAATGGAAGTCTTTGTGGCATATCTGAAATGGAAGCC
1 AAATGAAAGCCTTTGTGGCATATCTATGAAATGGAAGACTTTGTGGCATATCTGAAATGGAAGCC
36575877 TTTGTGGCAATCTATG
66 TTTGTGGCAATCTATG
* * * * *
36575893 AAAT-AGAAGCCTTTGTGTCATATCTA--AAATGGAAGACTTTTTGGCAATTTATGAAATGAAAG
1 AAATGA-AAGCCTTTGTGGCATATCTATGAAATGGAAGACTTTGTGGC-ATATCTGAAATGGAAG
* *
36575955 CCTTTATGGCGATCTATG
64 CCTTTGTGGCAATCTATG
36575973 GAAAGGGTTA
Statistics
Matches: 211, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
78 11 0.05
79 134 0.64
80 66 0.31
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (81 bp):
AAATGAAAGCCTTTGTGGCATATCTATGAAATGGAAGACTTTGTGGCATATCTGAAATGGAAGCC
TTTGTGGCAATCTATG
Found at i:36575915 original size:132 final size:132
Alignment explanation
Indices: 36575654--36575964 Score: 455
Period size: 132 Copynumber: 2.4 Consensus size: 132
36575644 AACATGCCAA
* * * *
36575654 AAAATGGAAGCCTTTGTAGCAATCTATGAAATGGAAGTCTTTGTGGCGTATCTGAAATGGAAGCC
1 AAAATGGAAGCCTTTGTGGCAATCTATGAAATGAAAGCCTTTGTGGCATATCTGAAATGGAAGCC
*
36575719 TTTGTGGCAATATATCAAATGGAAGCCTTTGTGGCAATCTATGAAATGGAAACCTTATGGCATAT
66 TTTGTGGCAATATATCAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTATGGCATAT
36575784 CT
131 CT
* * *
36575786 GAAATGGAAGCCTTTGTGGCAATCCATGAAATGAAAGCCTTTGTGGCATATCTGAAATGGAAGTC
1 AAAATGGAAGCCTTTGTGGCAATCTATGAAATGAAAGCCTTTGTGGCATATCTGAAATGGAAGCC
* * *
36575851 TTTGTGGC-ATATCTGAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAGCCTT-TGTGTCAT
66 TTTGTGGCAATATATCAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTATG-G-CAT
36575914 ATCT
129 ATCT
* * * *
36575918 AAAATGGAAGACTTTTTGGCAATTTATGAAATGAAAGCCTTTATGGC
1 AAAATGGAAGCCTTTGTGGCAATCTATGAAATGAAAGCCTTTGTGGC
36575965 GATCTATGGA
Statistics
Matches: 160, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
130 2 0.01
131 44 0.28
132 114 0.71
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (132 bp):
AAAATGGAAGCCTTTGTGGCAATCTATGAAATGAAAGCCTTTGTGGCATATCTGAAATGGAAGCC
TTTGTGGCAATATATCAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTATGGCATAT
CT
Found at i:36575972 original size:27 final size:27
Alignment explanation
Indices: 36575655--36575972 Score: 352
Period size: 27 Copynumber: 12.0 Consensus size: 27
36575645 ACATGCCAAA
*
36575655 AAATGGAAGCCTTTGTAGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
36575682 AAATGGAAGTCTTTGTGGCGTATC--TG
1 AAATGGAAGCCTTTGTGGC-AATCTATG
* *
36575708 AAATGGAAGCCTTTGTGGCAATATATC
1 AAATGGAAGCCTTTGTGGCAATCTATG
36575735 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
36575762 AAATGGAAACC-TTATGGCATATC--TG
1 AAATGGAAGCCTTTGTGGCA-ATCTATG
*
36575787 AAATGGAAGCCTTTGTGGCAATCCATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
36575814 AAATGAAAGCCTTTGTGGCATATC--TG
1 AAATGGAAGCCTTTGTGGCA-ATCTATG
*
36575840 AAATGGAAGTCTTTGTGGCATATC--TG
1 AAATGGAAGCCTTTGTGGCA-ATCTATG
36575866 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
36575893 AAATAGAAGCCTTTGTGTCATATCTA--
1 AAATGGAAGCCTTTGTGGCA-ATCTATG
* * *
36575919 AAATGGAAGACTTTTTGGCAATTTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* * *
36575946 AAATGAAAGCCTTTATGGCGATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
36575973 GAAAGGGTTA
Statistics
Matches: 249, Mismatches: 29, Indels: 26
0.82 0.10 0.09
Matches are distributed among these distances:
25 24 0.10
26 95 0.38
27 119 0.48
28 11 0.04
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:36576164 original size:27 final size:27
Alignment explanation
Indices: 36576134--36576204 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
36576124 TGGTATGGCA
*
36576134 AACACTAAAGGAATAGTACATATAGAG
1 AACACTGAAGGAATAGTACATATAGAG
* * *
36576161 AACATTGAAGGAAT-GATACATATGGCG
1 AACACTGAAGGAATAG-TACATATAGAG
*
36576188 AACACTGTAGGAATAGT
1 AACACTGAAGGAATAGT
36576205 GTGTATGGCG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (27 bp):
AACACTGAAGGAATAGTACATATAGAG
Found at i:36580885 original size:30 final size:30
Alignment explanation
Indices: 36580827--36580885 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36580817 TTTACGAGCC
* *
36580827 TAGGGGCAAAATTGTAATTTTGTGAAAGTT
1 TAGGGGCAAAAATGTAATTTTGTCAAAGTT
36580857 TAGGGGCAAAAATGTAATTTT-TCCAAAGT
1 TAGGGGCAAAAATGTAATTTTGT-CAAAGT
36580886 ATGATTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGTCAAAGTT
Found at i:36581175 original size:50 final size:52
Alignment explanation
Indices: 36581112--36581258 Score: 201
Period size: 50 Copynumber: 2.9 Consensus size: 52
36581102 AGTGAAAGTG
* *
36581112 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGAT-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAATGATA
* ** *
36581163 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGTGTATTG-AATGGTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAATGATA
* *
36581213 ATGGTCACATGTGTAGTACTATGTGCAAGCTACTATGTGAACCGAA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAA
36581259 CATTATTTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
49 5 0.06
50 38 0.46
51 38 0.46
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (52 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAATGATA
Found at i:36581200 original size:26 final size:26
Alignment explanation
Indices: 36581170--36581251 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
36581160 GATAGGTCGC
36581170 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* *
36581196 ATGTGTATTGA--ATG-GTAATGG-TCAC-
1 ATGTGTAGT-ACTATGTG-CA-GGCT-ACT
*
36581221 ATGTGTAGTACTATGTGCAAGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
36581247 ATGTG
1 ATGTG
36581252 AACCGAACAT
Statistics
Matches: 42, Mismatches: 5, Indels: 18
0.65 0.08 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.38
26 22 0.52
27 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:36581344 original size:45 final size:45
Alignment explanation
Indices: 36581258--36581344 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
36581248 TGTGAACCGA
* * * *
36581258 ACATTATTTATTAGTAAAGTGGTTCCTATGTGCTGATTCCACTGG
1 ACATCATTGATTAATAAAGTGGTTCCTATGTGCTGAATCCACTGG
* * *
36581303 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCAC
1 ACATCATTGATTAATAAAGTGGTTCCTATGTGCTGAATCCAC
36581345 CGAGTATCTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTCCTATGTGCTGAATCCACTGG
Found at i:36583951 original size:3 final size:3
Alignment explanation
Indices: 36583931--36584020 Score: 76
Period size: 3 Copynumber: 30.3 Consensus size: 3
36583921 AATACTAAAT
* * * * * *
36583931 ATA ATA ATG ATA ACA ATA ATA AGA ATA AGT- ATA ATA ACA CTA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
* * *
36583976 ATA ATA ATA ATA ATA AGA ATA TTA ATA A-A ATA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36584021 GGACTAATTT
Statistics
Matches: 66, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
2 3 0.05
3 62 0.94
4 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:36583989 original size:15 final size:14
Alignment explanation
Indices: 36583914--36584014 Score: 69
Period size: 15 Copynumber: 6.9 Consensus size: 14
36583904 ATGAATATAC
*
36583914 AAAAT-ATAATACT
1 AAAATAATAATAAT
*
36583927 AAATATAATAATGAT
1 AAA-ATAATAATAAT
*
36583942 AACAATAATAAGAAT
1 AA-AATAATAATAAT
* * *
36583957 AAGTATAATAACACT
1 AA-AATAATAATAAT
*
36583972 AATGATAATAATAAT
1 AA-AATAATAATAAT
* *
36583987 AATAAGAATATTAAT
1 AA-AATAATAATAAT
36584002 AAAATAATAATAA
1 AAAATAATAATAA
36584015 AAATAAGGAC
Statistics
Matches: 68, Mismatches: 17, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
13 3 0.04
14 11 0.16
15 53 0.78
16 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (14 bp):
AAAATAATAATAAT
Done.