Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 126 of 211
Found at i:36585447 original size:35 final size:35
Alignment explanation
Indices: 36585379--36585499 Score: 172
Period size: 35 Copynumber: 3.5 Consensus size: 35
36585369 AGTACATCTA
* *
36585379 TAATCCAACCGAAACACACCAGATGCTCATAAGAGC
1 TAATCCATCCAAAACACACCA-ATGCTCATAAGAGC
* *
36585415 TAATCCATCCAGAACACATCAATGCTCATAAGAGC
1 TAATCCATCCAAAACACACCAATGCTCATAAGAGC
* *
36585450 TAATCCATCTAAAACACACCAATGCTCATAAGAGA
1 TAATCCATCCAAAACACACCAATGCTCATAAGAGC
36585485 T-ATCCATCCAAAACA
1 TAATCCATCCAAAACA
36585500 TGCCAAAACA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
34 13 0.17
35 46 0.61
36 17 0.22
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.18
Consensus pattern (35 bp):
TAATCCATCCAAAACACACCAATGCTCATAAGAGC
Found at i:36588543 original size:51 final size:50
Alignment explanation
Indices: 36588481--36588669 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 50
36588471 ATACTCGGTT
* * *
36588481 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCAGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCAGGTA
** * * *
36588532 CATGTAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCAGGTA
* * * * *
36588583 CGCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCAGGTA
36588633 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
36588670 TAGCAACTTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 1 0.01
50 43 0.38
51 67 0.59
52 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCAGGTA
Found at i:36588665 original size:101 final size:101
Alignment explanation
Indices: 36588483--36588667 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
36588473 ACTCGGTTCA
* * * **
36588483 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCAGATACATGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TATCATCAGATACACATAGTAGCCTGCA
36588548 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
* *
36588585 CATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACACATAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATATCA-TCAGATACACATAGTAGCCTGCA
36588649 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
36588668 CCTAGCAACT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 33 0.44
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATATCATCAGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCTGGTACG
Found at i:36588852 original size:16 final size:16
Alignment explanation
Indices: 36588827--36588858 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36588817 ATCTAGTCCA
36588827 AAAATCACATTTTTGC
1 AAAATCACATTTTTGC
*
36588843 AAAATTACATTTTTGC
1 AAAATCACATTTTTGC
36588859 CCCTAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAATCACATTTTTGC
Found at i:36591181 original size:17 final size:16
Alignment explanation
Indices: 36591161--36591205 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
36591151 AAAATTATTT
36591161 AATTAATAATTAAATTA
1 AATTAATAATTAAA-TA
*
36591178 AATTAATTAATTGAATA
1 AATTAA-TAATTAAATA
36591195 AA-TAATAATTA
1 AATTAATAATTA
36591206 TTTGGGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 5 0.20
16 3 0.12
17 10 0.40
18 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
AATTAATAATTAAATA
Found at i:36594321 original size:13 final size:13
Alignment explanation
Indices: 36594303--36594347 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
36594293 TTTAAATAAA
36594303 CAGTTAATAAAAT
1 CAGTTAATAAAAT
* *
36594316 CAGTTAGTCAAAT
1 CAGTTAATAAAAT
* *
36594329 CAATTAATAGAAT
1 CAGTTAATAAAAT
36594342 CAGTTA
1 CAGTTA
36594348 GTCAAACCAG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (13 bp):
CAGTTAATAAAAT
Found at i:36594368 original size:26 final size:26
Alignment explanation
Indices: 36594308--36594369 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
36594298 ATAAACAGTT
* **
36594308 AATAAAATCAGTTAGTCAAATCAATT
1 AATACAATCAGTTAGTCAAATCAAGC
* *
36594334 AATAGAATCAGTTAGTCAAA-CCAGC
1 AATACAATCAGTTAGTCAAATCAAGC
36594359 AATTACAATCA
1 AA-TACAATCA
36594370 ACTATCAGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (26 bp):
AATACAATCAGTTAGTCAAATCAAGC
Found at i:36594617 original size:20 final size:20
Alignment explanation
Indices: 36594572--36594620 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
36594562 TTTGTAATGG
*
36594572 TTATATCTTAATACTTAAAA
1 TTATATTTTAATACTTAAAA
36594592 -TATATTTTATATA-TTAAAA
1 TTATATTTTA-ATACTTAAAA
36594611 TTATATTTTA
1 TTATATTTTA
36594621 GAAATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATATTTTAATACTTAAAA
Found at i:36594742 original size:38 final size:36
Alignment explanation
Indices: 36594670--36594745 Score: 89
Period size: 38 Copynumber: 2.1 Consensus size: 36
36594660 TATATTTAAT
** **
36594670 TTATTAAAATATTAATAATAAATTATTTTTATATTA
1 TTATTAAAATATTAATAATAAAAAATTTAAATATTA
*
36594706 TTATTAAAATATCATAATATTAAAAAATTTAAATATTA
1 TTATTAAAATAT--TAATAATAAAAAATTTAAATATTA
36594744 TT
1 TT
36594746 TAAATATATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 12 0.36
38 21 0.64
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (36 bp):
TTATTAAAATATTAATAATAAAAAATTTAAATATTA
Found at i:36597434 original size:3 final size:3
Alignment explanation
Indices: 36597426--36597472 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
36597416 GTTACTTTTG
36597426 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36597473 AAATACCATC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:36597862 original size:42 final size:46
Alignment explanation
Indices: 36597771--36597869 Score: 145
Period size: 47 Copynumber: 2.2 Consensus size: 46
36597761 ATTTTCACCA
*
36597771 TTCTCATATTTTATAATGCATGTGCACTATTATAACATTATCACGCT
1 TTCTCACATTTTATAATGCA-GTGCACTATTATAACATTATCACGCT
36597818 TTCTCACATTTTATAATGCA-TGCACT-TTATAACA-TA-CACGCT
1 TTCTCACATTTTATAATGCAGTGCACTATTATAACATTATCACGCT
36597860 TTC-CACATTT
1 TTCTCACATTT
36597870 GTTAATTAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
41 7 0.14
42 9 0.18
43 2 0.04
44 8 0.16
45 6 0.12
47 19 0.37
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (46 bp):
TTCTCACATTTTATAATGCAGTGCACTATTATAACATTATCACGCT
Found at i:36601606 original size:20 final size:20
Alignment explanation
Indices: 36601581--36601620 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36601571 TTCACCTCAT
36601581 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
36601601 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
36601621 AAGACCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:36609775 original size:100 final size:100
Alignment explanation
Indices: 36609603--36609997 Score: 648
Period size: 100 Copynumber: 4.0 Consensus size: 100
36609593 ATGGAGCGGG
*
36609603 TTGCAATTAAAAAGATTGAAGCCACAACGG-TGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
* *
36609667 TTGAAGCTACGACGGCGAATTTGGTTTCCCTGATA
66 TTGAAGCTACGACGGCGGATCTGGTTTCCCTGATA
*
36609702 TTGCAATTAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
36609767 TTGAAGCTACGACGGCGGATCTGGTTTCCCTGATA
66 TTGAAGCTACGACGGCGGATCTGGTTTCCCTGATA
*
36609802 TTGCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
* *
36609867 TTGAAGCTACGACGGTGGATCTGGTTTCCCTAATA
66 TTGAAGCTACGACGGCGGATCTGGTTTCCCTGATA
* * ***
36609902 TTGCAATTAAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTGGTGGAACAG
1 TTGCAATT-AAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAG
* *
36609967 ATTGAAGCTACGACGGCAGATCTAGTTTCCC
65 ATTGAAGCTACGACGGCGGATCTGGTTTCCC
36609998 CAACATTGCA
Statistics
Matches: 277, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
99 29 0.10
100 170 0.61
101 78 0.28
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
TTGAAGCTACGACGGCGGATCTGGTTTCCCTGATA
Found at i:36609983 original size:50 final size:50
Alignment explanation
Indices: 36609615--36609989 Score: 281
Period size: 50 Copynumber: 7.5 Consensus size: 50
36609605 GCAATTAAAA
* *
36609615 AGATTGAAGCCACAACGG-TGATCTTACTTCCTTAGCAGTGCAATGGAAC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAATGGAAC
* * * ** * * ** *
36609664 AGATTGAAGCTACGACGGCGAAT-TTGGTTTCCCT-GATATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTT-ACTTCCCTAG-CAGTGCAATGGAAC
* *
36609714 AGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAATGGAAC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAATGGAAC
* * *** * * ** *
36609764 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCT-GATATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGTGCAATGGAAC
* *
36609814 AGATTGAAGCCATAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAAC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAATGGAAC
* * * *** ** * ** *
36609864 AGATTGAAGCTACGACGGTGGATCTGGTTTCCCTAATATTGCAATTAAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAA-TGGAAC
* ***
36609915 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTGGTGGAAC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAATGGAAC
* * *
36609965 AGATTGAAGCTACGACGGCAGATCT
1 AGATTGAAGCCACAACGGCGGATCT
36609990 AGTTTCCCCA
Statistics
Matches: 237, Mismatches: 81, Indels: 15
0.71 0.24 0.05
Matches are distributed among these distances:
49 20 0.08
50 179 0.76
51 38 0.16
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAATGGAAC
Found at i:36610023 original size:201 final size:199
Alignment explanation
Indices: 36609603--36610007 Score: 639
Period size: 201 Copynumber: 2.0 Consensus size: 199
36609593 ATGGAGCGGG
*
36609603 TTGCAATTAAAAAGATTGAAGCCACAACGGTGATCTTACTTCCTTAGCAGTGCAATGGAACAGAT
1 TTGCAATTAAAAAGATTGAAGCCACAACGGGGATCTTACTTCCTTAGCAGTGCAATGGAACAGAT
* *
36609668 TGAAGCTACGACGGCGAATTTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGAC
66 TGAAGCTACGACGGCGAATCTGGTTTCCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGAC
* * * *
36609733 GGATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCT
131 GGATCTTACTTCCCTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTCCCC
* *
36609798 GATA
196 AACA
*
36609802 TTGCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGG-GGATCTTACTTCCTTAGCAGTGCAATGGAACAGA
* *
36609867 TTGAAGCTACGACGGTGGATCTGGTTTCCCTAATATTGCAATTAAAAAAGATTGAAGCCACAACG
65 TTGAAGCTACGACGGCGAATCTGGTTTCCCTAATATTGCAATT-AAAAAGATTGAAGCCACAACG
* * ***
36609932 GCGGATCTTACTTCCCTAGCGGTGTGGTGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTCC
129 ACGGATCTTACTTCCCTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTCC
36609997 CCAACA
194 CCAACA
36610003 TTGCA
1 TTGCA
36610008 GTTGAACAAA
Statistics
Matches: 187, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
199 29 0.16
200 72 0.39
201 86 0.46
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (199 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGGGATCTTACTTCCTTAGCAGTGCAATGGAACAGAT
TGAAGCTACGACGGCGAATCTGGTTTCCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGAC
GGATCTTACTTCCCTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTCCCC
AACA
Found at i:36611188 original size:5 final size:5
Alignment explanation
Indices: 36611137--36611175 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
36611127 GTTCTTGCAT
*
36611137 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTC TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
36611176 GAGTTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:36616349 original size:25 final size:26
Alignment explanation
Indices: 36616299--36616349 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
36616289 AAATGAATAA
36616299 TAAAATTATTATTTTATTTAAATATT
1 TAAAATTATTATTTTATTTAAATATT
36616325 TAAAA-TATTATTTTATTTAAATATT
1 TAAAATTATTATTTTATTTAAATATT
36616350 AATATAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TAAAATTATTATTTTATTTAAATATT
Found at i:36616991 original size:8 final size:8
Alignment explanation
Indices: 36616978--36617002 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36616968 ATAGATACAA
36616978 TTTTTAAT
1 TTTTTAAT
36616986 TTTTTAAT
1 TTTTTAAT
36616994 TTTTTAAT
1 TTTTTAAT
36617002 T
1 T
36617003 CCTTTCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTAAT
Found at i:36624513 original size:27 final size:27
Alignment explanation
Indices: 36624482--36624659 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36624472 TAAATTGTAC
*
36624482 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
36624509 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36624535 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
36624563 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36624590 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
36624618 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
36624645 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36624660 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:36624543 original size:54 final size:55
Alignment explanation
Indices: 36624482--36624659 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
36624472 TAAATTGTAC
* **
36624482 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
36624537 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
36624590 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
36624645 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36624660 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:36627799 original size:24 final size:25
Alignment explanation
Indices: 36627771--36627817 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
36627761 AGATTGTTAA
36627771 AACAACTTC-TAAAG-AAAACTCAAG
1 AACAA-TTCTTAAAGAAAAACTCAAG
*
36627795 AACAATTCTTGAAGAAAAACTCA
1 AACAATTCTTAAAGAAAAACTCA
36627818 GAGAGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 9 0.45
25 8 0.40
ACGTcount: A:0.53, C:0.19, G:0.09, T:0.19
Consensus pattern (25 bp):
AACAATTCTTAAAGAAAAACTCAAG
Found at i:36633221 original size:13 final size:13
Alignment explanation
Indices: 36633199--36633229 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36633189 TTTCCAGAAA
*
36633199 TTATGCATTTATT
1 TTATGAATTTATT
36633212 TTATGAATTTATT
1 TTATGAATTTATT
36633225 TTATG
1 TTATG
36633230 TTGACTCCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:36633446 original size:50 final size:50
Alignment explanation
Indices: 36633325--36633616 Score: 397
Period size: 50 Copynumber: 5.8 Consensus size: 50
36633315 ATTTGGGTAA
* * *
36633325 AGAGGTCCCATGTAAGATCATGTCTTGGACACGGCGTTGGCACCGA-ATG
1 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
36633374 AGAGGTCCCATGTAAGATCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
36633424 AGAGGTCCCCTGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
36633474 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
36633524 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * *
36633574 AGAACATCCCATGTAAGAACATATCTGAGAGATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCA
36633617 TGTTATTATC
Statistics
Matches: 218, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 43 0.20
50 145 0.67
51 30 0.14
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:36634273 original size:53 final size:53
Alignment explanation
Indices: 36634210--36634318 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
36634200 TCTATGTGAT
36634210 AAATTATGCATAGAAATCATGAAAGAGTAATGATTTGCAAAGAAACAAATTTC
1 AAATTATGCATAGAAATCATGAAAGAGTAATGATTTGCAAAGAAACAAATTTC
36634263 AAATTATGCATAGAAATCATGAAAGAGTAATGATTTGCAAAGAAACAAATTTC
1 AAATTATGCATAGAAATCATGAAAGAGTAATGATTTGCAAAGAAACAAATTTC
36634316 AAA
1 AAA
36634319 CAGCAGCAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (53 bp):
AAATTATGCATAGAAATCATGAAAGAGTAATGATTTGCAAAGAAACAAATTTC
Found at i:36673897 original size:15 final size:16
Alignment explanation
Indices: 36673864--36673897 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36673854 TTATTCTATT
36673864 TTTCTTCACCTACTCC
1 TTTCTTCACCTACTCC
*
36673880 TTTCTTCCCCTA-TCC
1 TTTCTTCACCTACTCC
36673895 TTT
1 TTT
36673898 GCCAAACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.09, C:0.41, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTCTTCACCTACTCC
Found at i:36675195 original size:22 final size:22
Alignment explanation
Indices: 36675170--36675214 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
36675160 ATTATGATGA
36675170 TTGATATG-ATGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
36675192 TTGATATGTATGTGATTATATT
1 TTGATATGTATGAGATTATATT
36675214 T
1 T
36675215 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:36682050 original size:14 final size:14
Alignment explanation
Indices: 36682031--36682057 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36682021 CTATAAATAA
36682031 AATTAAAGAAAAGG
1 AATTAAAGAAAAGG
36682045 AATTAAAGAAAAG
1 AATTAAAGAAAAG
36682058 AAAGATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.15
Consensus pattern (14 bp):
AATTAAAGAAAAGG
Found at i:36692423 original size:15 final size:16
Alignment explanation
Indices: 36692405--36692438 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
36692395 AGATTAAATT
36692405 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
36692420 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
36692436 AAT
1 AAT
36692439 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:36707404 original size:11 final size:11
Alignment explanation
Indices: 36707361--36707404 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 11
36707351 CCAACATATC
36707361 AATCTATACAGA
1 AATCT-TACAGA
36707373 AATCTTACAGTAA
1 AATCTTACAG--A
36707386 ACATCTTACAGA
1 A-ATCTTACAGA
36707398 AATCTTA
1 AATCTTA
36707405 ACAAGGAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.38
12 7 0.24
13 2 0.07
14 9 0.31
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (11 bp):
AATCTTACAGA
Found at i:36715404 original size:20 final size:21
Alignment explanation
Indices: 36715373--36715420 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
36715363 TGCTTTAAGA
36715373 GCACCGAA-GTGCAAGT-AGGG
1 GCACC-AATGTGCAAGTCAGGG
*
36715393 GCACCAATGTGCAATTCAGGG
1 GCACCAATGTGCAAGTCAGGG
*
36715414 GTACCAA
1 GCACCAA
36715421 AGTACAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 12 0.50
21 10 0.42
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (21 bp):
GCACCAATGTGCAAGTCAGGG
Found at i:36715419 original size:21 final size:20
Alignment explanation
Indices: 36715381--36715420 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36715371 GAGCACCGAA
36715381 GTGCAAGTAGGGGCACCAAT
1 GTGCAAGTAGGGGCACCAAT
* *
36715401 GTGCAATTCAGGGGTACCAA
1 GTGCAAGT-AGGGGCACCAA
36715421 AGTACAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.30, C:0.20, G:0.33, T:0.17
Consensus pattern (20 bp):
GTGCAAGTAGGGGCACCAAT
Found at i:36730977 original size:27 final size:27
Alignment explanation
Indices: 36730946--36731123 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36730936 TAAATTGTAC
36730946 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36730973 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36730999 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36731027 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36731055 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36731082 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36731109 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36731124 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36731060 original size:82 final size:81
Alignment explanation
Indices: 36730947--36731102 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36730937 AAATTGTACA
* *
36730947 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36731011 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36731028 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36731093 TGCGAGTTGA
65 TGCGAATTGA
36731103 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36731114 original size:82 final size:81
Alignment explanation
Indices: 36730943--36731123 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36730933 GATTAAATTG
* *
36730943 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36731008 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36731024 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36731088 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36731106 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36731124 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36738916 original size:17 final size:18
Alignment explanation
Indices: 36738892--36738929 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
36738882 TTTCCAAATG
36738892 TTTCCCATTTC-A-TCAT
1 TTTCCCATTTCTATTCAT
36738908 TTTCACCATTTCTATTCAT
1 TTTC-CCATTTCTATTCAT
36738927 TTT
1 TTT
36738930 TTTATTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 7 0.37
18 1 0.05
19 7 0.37
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTCCCATTTCTATTCAT
Found at i:36744383 original size:56 final size:56
Alignment explanation
Indices: 36744323--36744437 Score: 212
Period size: 56 Copynumber: 2.1 Consensus size: 56
36744313 AAGTAAATTA
*
36744323 TTATTATTATTATTTTAATGTCTATGGGATGTTAGTAAGGTCATATTAAAATTTTG
1 TTATTATTATTATTTTAATGCCTATGGGATGTTAGTAAGGTCATATTAAAATTTTG
*
36744379 TTATTATTATTATTTTAATGCCTATGGGATGTTAGTAAGGTCGTATTAAAATTTTG
1 TTATTATTATTATTTTAATGCCTATGGGATGTTAGTAAGGTCATATTAAAATTTTG
36744435 TTA
1 TTA
36744438 AGAAATTTTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.50
Consensus pattern (56 bp):
TTATTATTATTATTTTAATGCCTATGGGATGTTAGTAAGGTCATATTAAAATTTTG
Found at i:36747530 original size:21 final size:21
Alignment explanation
Indices: 36747504--36747544 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36747494 AGAATATAAA
36747504 TTATAACTCATAATTATTTTT
1 TTATAACTCATAATTATTTTT
* **
36747525 TTATAATTTTTAATTATTTT
1 TTATAACTCATAATTATTTT
36747545 CCAAAGTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATAACTCATAATTATTTTT
Found at i:36747788 original size:16 final size:16
Alignment explanation
Indices: 36747767--36747798 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36747757 GTTTTGTTGC
*
36747767 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
36747783 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
36747799 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:36748091 original size:51 final size:51
Alignment explanation
Indices: 36748022--36748216 Score: 209
Period size: 51 Copynumber: 3.8 Consensus size: 51
36748012 AATACCGGTT
* * * *
36748022 CACATAGTAGCCTACACATAGTACTACGCATGTGACCATCACTATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTA
* * *
36748073 CACGTAGTAGCTTGCACATAGTACTACACACGTGATCGA--AGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCTGGTA
** * * * * *
36748124 CGTATAATAGTCTGCACATAGTACTATACATGCGACCTATCA-T-TCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGGTA
36748174 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
36748217 TTCACTTTCA
Statistics
Matches: 114, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
49 4 0.04
50 40 0.35
51 67 0.59
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTA
Found at i:36755055 original size:47 final size:47
Alignment explanation
Indices: 36754997--36755136 Score: 271
Period size: 47 Copynumber: 3.0 Consensus size: 47
36754987 CAGCCAAGAC
*
36754997 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
36755044 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
36755091 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
36755137 TAAGGCCTAA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:36755138 original size:31 final size:31
Alignment explanation
Indices: 36755100--36755167 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
36755090 AAGTGTATAT
36755100 ATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGA
*
36755131 ATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGA
36755162 ATGTGA
1 ATGTGA
36755168 AAGTGTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (31 bp):
ATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:36755145 original size:78 final size:78
Alignment explanation
Indices: 36755053--36755214 Score: 306
Period size: 78 Copynumber: 2.1 Consensus size: 78
36755043 AAGTGTATAT
36755053 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
36755118 GCCGATGTGATGA
66 GCCGATGTGATGA
* *
36755131 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
36755196 GCCGATGTGATGA
66 GCCGATGTGATGA
36755209 ATGTGA
1 ATGTGA
36755215 AAGTGTATAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (78 bp):
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGA
Found at i:36755200 original size:47 final size:47
Alignment explanation
Indices: 36755131--36755515 Score: 610
Period size: 47 Copynumber: 8.2 Consensus size: 47
36755121 GATGTGATGA
*
36755131 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
36755178 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
36755225 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
36755271 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAGAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
36755318 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* *
36755365 ATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
36755412 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * * *
36755459 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
36755506 ATGTGATAAG
1 ATGTGATAAG
36755516 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 45 0.14
47 273 0.86
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:36755230 original size:125 final size:125
Alignment explanation
Indices: 36755006--36755401 Score: 603
Period size: 125 Copynumber: 3.0 Consensus size: 125
36754996 CAGTGTATAT
36755006 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
36755071 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
36755131 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
36755196 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC--------G-ATGTG
36755261 AAGTGTATA
122 -A-TG---A
* *
36755270 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAGGCCTAAT
1 -ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
36755335 AGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
65 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
36755396 ATGTGA
1 ATGTGA
36755402 AAGTGTATAT
Statistics
Matches: 248, Mismatches: 8, Indels: 30
0.87 0.03 0.10
Matches are distributed among these distances:
125 119 0.48
126 1 0.00
129 2 0.01
130 1 0.00
131 5 0.02
132 1 0.00
133 1 0.00
134 5 0.02
135 1 0.00
136 2 0.01
139 1 0.00
140 109 0.44
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (125 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:36755342 original size:187 final size:188
Alignment explanation
Indices: 36755130--36755515 Score: 612
Period size: 187 Copynumber: 2.1 Consensus size: 188
36755120 CGATGTGATG
* * *
36755130 AATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT
1 AATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
*
36755195 AGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
66 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * *
36755260 G-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAGAGTGTATA
131 GAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
*
36755317 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
1 AATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
* *
36755382 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * *
36755447 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA
131 GAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
36755505 AATGTGATAAG
1 AATGTGATAAG
36755516 TCCCGAAGGG
Statistics
Matches: 180, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
187 124 0.69
188 56 0.31
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (188 bp):
AATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
GAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
Found at i:36755690 original size:37 final size:37
Alignment explanation
Indices: 36755634--36755712 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36755624 CCGAGCTCTA
* *
36755634 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36755671 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36755708 AAGAC
1 AAGAC
36755713 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36761406 original size:19 final size:19
Alignment explanation
Indices: 36761379--36761417 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
36761369 TTATTCCAGC
36761379 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
* *
36761398 AACTTAATTAACTAATATG
1 AACTAAATTAACTAAGATG
36761417 A
1 A
36761418 GTAATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.31
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:36761429 original size:54 final size:54
Alignment explanation
Indices: 36761369--36761494 Score: 198
Period size: 54 Copynumber: 2.3 Consensus size: 54
36761359 CAACAATAAA
* * * *
36761369 TTATTCCAGCAACTAAATTAACTAAGATGAACTTAATTAACTAATATGAGTAAT
1 TTATTCCAGCAACTAAATTAAATAAGATAAACTCAATTAACTAAGATGAGTAAT
*
36761423 TTATTCCAGCAACTTAATTAAATAAGATAAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAAATAAGATAAACTCAATTAACTAAGATGAGTAAT
*
36761477 TTATTCCAACAACTAAAT
1 TTATTCCAGCAACTAAAT
36761495 ACTTATTCCA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAAATAAGATAAACTCAATTAACTAAGATGAGTAAT
Found at i:36761460 original size:19 final size:19
Alignment explanation
Indices: 36761433--36761469 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36761423 TTATTCCAGC
*
36761433 AACTTAATTAAATAAGATA
1 AACTCAATTAAATAAGATA
*
36761452 AACTCAATTAACTAAGAT
1 AACTCAATTAAATAAGAT
36761470 GAGTAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.30
Consensus pattern (19 bp):
AACTCAATTAAATAAGATA
Found at i:36763534 original size:18 final size:19
Alignment explanation
Indices: 36763506--36763562 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 19
36763496 TTATTTCAAC
36763506 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
36763525 AACT-AATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
36763543 AACTCAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
36763562 A
1 A
36763563 GTAATTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.49
19 19 0.51
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:36768237 original size:25 final size:25
Alignment explanation
Indices: 36768201--36768261 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
36768191 CTCTTAAATT
*
36768201 TTAATTTAATTATCTAAT-TTTTCA-A
1 TTAATTAAATTAT-TAATATTTT-ATA
*
36768226 TTTATTAAATTATTAATATTTTATA
1 TTAATTAAATTATTAATATTTTATA
36768251 TTAATTAAATT
1 TTAATTAAATT
36768262 TTGTAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATTAATATTTTATA
Found at i:36779504 original size:27 final size:27
Alignment explanation
Indices: 36779470--36779647 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36779460 TAAATTGTAC
36779470 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36779497 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36779523 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36779551 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36779579 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
36779606 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36779633 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36779648 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36779638 original size:82 final size:81
Alignment explanation
Indices: 36779467--36779647 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
36779457 GGTTAAATTG
* *
36779467 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36779532 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36779548 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
36779612 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
36779630 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36779648 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36782211 original size:27 final size:27
Alignment explanation
Indices: 36782158--36782211 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
36782148 ATCATGCTTT
* **
36782158 TACACATAGCTGTGGACAAGCTTCCAA
1 TACACATAGCTGTGGACAAACCACCAA
* *
36782185 TACACATAGTTGTGGATAAACCACCAA
1 TACACATAGCTGTGGACAAACCACCAA
36782212 ATTTGCCGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (27 bp):
TACACATAGCTGTGGACAAACCACCAA
Found at i:36782287 original size:168 final size:168
Alignment explanation
Indices: 36782006--36782325 Score: 577
Period size: 168 Copynumber: 1.9 Consensus size: 168
36781996 AAATTGCGGT
36782006 CAAGCTTCCAATACAAATAGTTGTCGATAAACCACCAAATTTGCAGATTATTAAACTGCCACATC
1 CAAGCTTCCAATACAAATAGTTGTCGATAAACCACCAAATTTGCAGATTATTAAACTGCCACATC
*
36782071 TTCCTCCTTACAAATGTCCCAACCCTATGTAATGCATCATGGCATACAAATCTCATTGCAAATCA
66 TTCCTCCTTACAAATGTCCCAACCCCATGTAATGCATCATGGCATACAAATCTCATTGCAAATCA
36782136 ATAGGCATGAAAATCATGCTTTTACACATAGCTGTGGA
131 ATAGGCATGAAAATCATGCTTTTACACATAGCTGTGGA
* * *
36782174 CAAGCTTCCAATACACATAGTTGTGGATAAACCACCAAATTTGCCGATTATTAAACTGCCACATC
1 CAAGCTTCCAATACAAATAGTTGTCGATAAACCACCAAATTTGCAGATTATTAAACTGCCACATC
* *
36782239 TTCCTCCTTACAAATGTCCTAACCCCATGTAATGCATCATGTCATACAAATCTCATTGCAAATCA
66 TTCCTCCTTACAAATGTCCCAACCCCATGTAATGCATCATGGCATACAAATCTCATTGCAAATCA
*
36782304 ATAGGCATGATAATCATGCTTT
131 ATAGGCATGAAAATCATGCTTT
36782326 CAAAATTTTA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
168 145 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (168 bp):
CAAGCTTCCAATACAAATAGTTGTCGATAAACCACCAAATTTGCAGATTATTAAACTGCCACATC
TTCCTCCTTACAAATGTCCCAACCCCATGTAATGCATCATGGCATACAAATCTCATTGCAAATCA
ATAGGCATGAAAATCATGCTTTTACACATAGCTGTGGA
Found at i:36784595 original size:10 final size:10
Alignment explanation
Indices: 36784580--36784641 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
36784570 TTTGAACCAT
*
36784580 TACCAATTCG
1 TACCAATTCA
*
36784590 TACCAAATACCA
1 TACC-AAT-TCA
*
36784602 TACCATTTCA
1 TACCAATTCA
36784612 TACCAATTCCA
1 TACCAATT-CA
* *
36784623 TACCATTTCG
1 TACCAATTCA
36784633 TACCAATTC
1 TACCAATTC
36784642 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:36784625 original size:21 final size:21
Alignment explanation
Indices: 36784580--36784642 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
36784570 TTTGAACCAT
* *
36784580 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
36784602 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
36784623 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
36784643 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:36796567 original size:26 final size:26
Alignment explanation
Indices: 36796538--36796593 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
36796528 CTATTAACTG
36796538 ATGTTATTAAAAAGTCTACGGGTTTT
1 ATGTTATTAAAAAGTCTACGGGTTTT
36796564 ATGTTATTAAAAAGTCTACGGGTTTT
1 ATGTTATTAAAAAGTCTACGGGTTTT
36796590 ATGT
1 ATGT
36796594 GGGGAGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (26 bp):
ATGTTATTAAAAAGTCTACGGGTTTT
Found at i:36797564 original size:14 final size:13
Alignment explanation
Indices: 36797539--36797578 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
36797529 AAACTTCATC
36797539 TATTTATTTATTTT
1 TATTT-TTTATTTT
36797553 TATATTTTTATTTT
1 TAT-TTTTTATTTT
*
36797567 TATTTGTTATTT
1 TATTTTTTATTT
36797579 GTTCTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 8 0.33
14 14 0.58
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:36804224 original size:40 final size:40
Alignment explanation
Indices: 36804126--36804388 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36804116 TCCTCGTTCA
* * * * *
36804126 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36804165 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36804205 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36804245 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36804285 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36804325 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36804365 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36804389 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36812190 original size:79 final size:79
Alignment explanation
Indices: 36812063--36812271 Score: 303
Period size: 79 Copynumber: 2.6 Consensus size: 79
36812053 TCCTCGTTCA
* * * *
36812063 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGATT
36812128 TAACAACTCGCACG
66 TAACAACTCGCACG
* * *
36812142 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACATAACCCGGAT
*
36812206 TTAATAACTCGCACG
65 TTAACAACTCGCACG
* *
36812221 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGG
36812272 ATCTTAATCC
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 24 0.21
79 54 0.47
80 37 0.32
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACG
Found at i:36812206 original size:40 final size:40
Alignment explanation
Indices: 36812063--36812324 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
36812053 TCCTCGTTCA
* * * * *
36812063 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36812102 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36812142 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36812181 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36812221 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36812261 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36812301 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36812325 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 73 0.37
40 115 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36819756 original size:40 final size:40
Alignment explanation
Indices: 36819658--36819920 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36819648 TCCTCGTTCA
* * * * *
36819658 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36819697 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36819737 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36819777 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36819817 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36819857 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36819897 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36819921 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36821437 original size:58 final size:58
Alignment explanation
Indices: 36821341--36821453 Score: 210
Period size: 58 Copynumber: 1.9 Consensus size: 58
36821331 AATAAGTATC
36821341 ACATTCAAACATTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTTCCCGACTAGTCA
1 ACATTCAAACATTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTTCCCGACTAGTCA
36821399 ACATTCAAACATTTCGGTGACTCGGTTTAGCGGT-CCGAAACCACTTCCCGACTAG
1 ACATTCAAACA-TTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTTCCCGACTAG
36821454 GGTCAACTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
58 32 0.59
59 22 0.41
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (58 bp):
ACATTCAAACATTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTTCCCGACTAGTCA
Found at i:36822640 original size:15 final size:15
Alignment explanation
Indices: 36822620--36822649 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36822610 TATATTATTA
36822620 ATTAATACATATGAT
1 ATTAATACATATGAT
36822635 ATTAATACATATGAT
1 ATTAATACATATGAT
36822650 TTTGTACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
ATTAATACATATGAT
Found at i:36825711 original size:25 final size:25
Alignment explanation
Indices: 36825669--36825722 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
36825659 TTTTCTCAAA
*
36825669 AATTTAATTAATATAAAATATTA-AT
1 AATTTAATAAATATAAAA-ATTAGAT
36825694 AATTTAATAAAT-TAAAAAATTAGAT
1 AATTTAATAAATAT-AAAAATTAGAT
36825719 AATT
1 AATT
36825723 AAATTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
AATTTAATAAATATAAAAATTAGAT
Found at i:36826412 original size:30 final size:30
Alignment explanation
Indices: 36826355--36826416 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
36826345 GTTTTCTGAA
* * *
36826355 AATATTTACAAAAAGATGCATCTAATTTTT
1 AATATTTACAAAAAGATGAACCAAATTTTT
36826385 AATATTTACAAAAAGA-GAAACCAAATTTTT
1 AATATTTACAAAAAGATG-AACCAAATTTTT
36826415 AA
1 AA
36826417 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGATGAACCAAATTTTT
Found at i:36834543 original size:20 final size:20
Alignment explanation
Indices: 36834483--36834544 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
36834473 TACTAATTAG
* * *
36834483 AACATATTTAATAGACTTAA
1 AACATATTTAACACACATAA
* **
36834503 GACATATTAATAACATGCATAA
1 AACATATT--TAACACACATAA
36834525 AACATATTTAACACACATAA
1 AACATATTTAACACACATAA
36834545 TTAAATTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 17 0.53
22 15 0.47
ACGTcount: A:0.52, C:0.15, G:0.05, T:0.29
Consensus pattern (20 bp):
AACATATTTAACACACATAA
Found at i:36834606 original size:9 final size:9
Alignment explanation
Indices: 36834594--36834627 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
36834584 TTAATTGAGT
36834594 TAATTTAAC
1 TAATTTAAC
36834603 TAATTTAAC
1 TAATTTAAC
* *
36834612 TAATTCAAA
1 TAATTTAAC
36834621 TAATTTA
1 TAATTTA
36834628 TTCCAACAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATTTAAC
Found at i:36841947 original size:43 final size:43
Alignment explanation
Indices: 36841898--36842271 Score: 436
Period size: 43 Copynumber: 8.7 Consensus size: 43
36841888 AAAGACCATT
36841898 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
* ** * * * *
36841941 AACTTTAGTAGCGCTTTTCCCACAAACGCTGTTAAAAACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
*
36841984 ACCTTTAGCGGC-CGTTTTCCCCACAAACGCCGTTAAAGACCAA-G
1 ACCTTTAGCGGCGC-TTTT-CCCACAAACGCCGCTAAAGA-CAAGG
* *
36842028 ACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
* **
36842071 ACCTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAGACCTGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
* **
36842114 ACCTTTAGCAGCGCTTTTCTAACAAACGCCGCTAAAGACCAA-G
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGA-CAAGG
* * *
36842157 ACCTTTAAC-GCTCTTTTCCCACAAACGCCGCTAAAGACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
* * * *
36842199 ACCTTTAGCGGCACTTTCCCCAAAAACGCAGCTAAAGACCAA-G
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGA-CAAGG
*
36842242 ACCTTTAGCGGCGC-TTTCTCCAAAAACGCC
1 ACCTTTAGCGGCGCTTTTC-CCACAAACGCC
36842272 ACTCCATTAT
Statistics
Matches: 282, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.01
42 40 0.14
43 199 0.71
44 38 0.13
45 3 0.01
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.21
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGG
Found at i:36842087 original size:130 final size:129
Alignment explanation
Indices: 36841886--36842271 Score: 508
Period size: 130 Copynumber: 3.0 Consensus size: 129
36841876 AAAAATACCA
** * * **
36841886 CTAAAGACCATTACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACAAGGAACTTTAGTA
1 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCG
* *
36841951 GCGCTTTTCCCACAAACGCTGTTAAAAACCAGGACCTTTAGCGGCCGTTTTCCCCACAAACGCCG
66 GCGCTTTTCCCACAAACGCTGCTAAAGACCAGGACCTTTAGCGG-CGTTTTCCCCACAAACGCCG
* *
36842016 TTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGACCAGGACCTTTAGCG
1 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCG
* * **
36842081 GCGCTTTTCCCACAAACG-TCGCTAAAGACCTGGACCTTTAGCAGCGCTTTT-CTAACAAACGCC
66 GCGCTTTTCCCACAAACGCT-GCTAAAGACCAGGACCTTTAGCGGCG-TTTTCCCCACAAACGCC
36842144 G
129 G
* *
36842145 CTAAAGACCAAGACCTTTAAC-GCTCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCG
1 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCG
* * * * * * * *
36842209 GCACTTTCCCCAAAAACGCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTCTCCAAAAACGCC
66 GCGCTTTTCCCACAAACGCTGCTAAAGACCAGGACCTTTAGCGGCGTTTTCCCCACAAACGCC
36842272 ACTCCATTAT
Statistics
Matches: 222, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
127 3 0.01
128 87 0.39
129 33 0.15
130 99 0.45
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (129 bp):
CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCG
GCGCTTTTCCCACAAACGCTGCTAAAGACCAGGACCTTTAGCGGCGTTTTCCCCACAAACGCCG
Found at i:36843180 original size:23 final size:23
Alignment explanation
Indices: 36843146--36843608 Score: 248
Period size: 23 Copynumber: 20.3 Consensus size: 23
36843136 AATGGAAAGT
*
36843146 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* *
36843169 AGCGA-TAAAACA-TCTCAATTTGC
1 AGC-ACTTAAACACT-TCAATTTAC
*
36843192 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
36843215 AGCACTTAAACA-TATCAA-TTATC
1 AGCACTTAAACACT-TCAATTTA-C
* * * *
36843238 AACATTTATACACCTC-ATTTAC
1 AGCACTTAAACACTTCAATTTAC
* *
36843260 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
*
36843283 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
36843306 AACACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * *
36843329 AGCATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
36843352 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * * *
36843375 AACATTTATACACCTCAA-TTAG
1 AGCACTTAAACACTTCAATTTAC
* * *
36843397 AACGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
36843420 TA-CAAC-TAAATACTTCAATTTGC
1 -AGC-ACTTAAACACTTCAATTTAC
36843443 AGCACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * * * *
36843466 AACATTTAGACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
36843489 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
36843512 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
*
36843534 AGCGA-TAAAACA-TCTCAATTT-C
1 AGC-ACTTAAACACT-TCAATTTAC
* *
36843556 TAGCAAC-TAAATACTTCAATTTGC
1 -AGC-ACTTAAACACTTCAATTTAC
*
36843580 AGCACTTAAACACTTTAATTTAC
1 AGCACTTAAACACTTCAATTTAC
*
36843603 AACACT
1 AGCACT
36843609 ATCAAACTTC
Statistics
Matches: 333, Mismatches: 72, Indels: 70
0.70 0.15 0.15
Matches are distributed among these distances:
22 55 0.17
23 271 0.81
24 7 0.02
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:36843324 original size:91 final size:91
Alignment explanation
Indices: 36843154--36843606 Score: 393
Period size: 91 Copynumber: 5.0 Consensus size: 91
36843144 GTAGCACTTT
* *
36843154 AACACTTCAATTTACAGCGATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCAGCA
1 AACACCTC-ATTTACAGCGATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCAGCA
36843219 CTTAAACATATCAA-TTATCAACATTTA
65 CTTAAACATATCAATTTA-CAACATTTA
* * *
36843246 TACACCTCATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAACAC
1 AACACCTCATTTACAGCGATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCAGCAC
*
36843311 TTAAACACT-TCAATTTACAGCATTTA
66 TTAAACA-TATCAATTTACAACATTTA
* * * * * * * ** * * * *
36843337 AACACTTAAATTTGCAGC-ACTTAAACATATCAATTAACAACATTTATACACCTCAATTAG-AAC
1 AACACCT-CATTTACAGCGA-TAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCAGC
* * * * **
36843400 GA-TAAAACATCTCAATTTCCTACAACTA
64 -ACTTAAACATATCAATTTACAACATTTA
* * * * * ** * *
36843428 AATACTTCAATTTGCAGC-ACTTAAACA-CTTCAATTTACAACATTTAGACACTTAAATTTGCAG
1 AACACCTC-ATTTACAGCGA-TAAAACATC-TCAATTTACAGCAACTAAACACTTCAATTTGCAG
*
36843491 CACTTAAACATATCAATTAACAACATTTA
63 CACTTAAACATATCAATTTACAACATTTA
* * *
36843520 TACACCTCAATTACAGCGATAAAACATCTCAATTT-CTAGCAACTAAATACTTCAATTTGCAGCA
1 AACACCTCATTTACAGCGATAAAACATCTCAATTTAC-AGCAACTAAACACTTCAATTTGCAGCA
*
36843584 CTTAAACACT-TTAATTTACAACA
65 CTTAAACA-TATCAATTTACAACA
36843607 CTATCAAACT
Statistics
Matches: 292, Mismatches: 55, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
90 2 0.01
91 212 0.73
92 78 0.27
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (91 bp):
AACACCTCATTTACAGCGATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCAGCAC
TTAAACATATCAATTTACAACATTTA
Found at i:36843600 original size:46 final size:45
Alignment explanation
Indices: 36843154--36843591 Score: 318
Period size: 46 Copynumber: 9.6 Consensus size: 45
36843144 GTAGCACTTT
* * * * **
36843154 AACACTTCAATTTACAGCGA-TAAAACATCTCAATTTGCAGCAACTA
1 AACACTTCAATTTGCAGC-ACTTAAACATATCAATTT-CAACATTTA
36843200 AACACTTCAATTTGCAGCACTTAAACATATCAATTATCAACATTTA
1 AACACTTCAATTTGCAGCACTTAAACATATCAATT-TCAACATTTA
* * * * * * **
36843246 TACACCTC-ATTTACAGCGA-TAAAACATCTCAATTTCCAGCAACTA
1 AACACTTCAATTTGCAGC-ACTTAAACATATCAATTT-CAACATTTA
* *
36843291 AACACTTCAATTTGCAACACTTAAACACT-TCAATTTACAGCATTTA
1 AACACTTCAATTTGCAGCACTTAAACA-TATCAATTT-CAACATTTA
* *
36843337 AACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTA
1 AACACTTCAATTTGCAGCACTTAAACATATCAATT-TCAACATTTA
* * * * * * * **
36843383 TACACCTCAATTAG-AACGA-TAAAACATCTCAATTTCCTACAACTA
1 AACACTTCAATTTGCAGC-ACTTAAACATATCAATTT-CAACATTTA
*
36843428 AATACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAACATTTA
1 AACACTTCAATTTGCAGCACTTAAACA-TATCAATTT-CAACATTTA
* * *
36843474 GACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTA
1 AACACTTCAATTTGCAGCACTTAAACATATCAATT-TCAACATTTA
* * * * * * **
36843520 TACACCTCAA-TTACAGCGA-TAAAACATCTCAATTTCTAGCAACTA
1 AACACTTCAATTTGCAGC-ACTTAAACATATCAATTTC-AACATTTA
*
36843565 AATACTTCAATTTGCAGCACTTAAACA
1 AACACTTCAATTTGCAGCACTTAAACA
36843592 CTTTAATTTA
Statistics
Matches: 306, Mismatches: 66, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
44 2 0.01
45 101 0.33
46 200 0.65
47 3 0.01
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (45 bp):
AACACTTCAATTTGCAGCACTTAAACATATCAATTTCAACATTTA
Found at i:36843604 original size:137 final size:137
Alignment explanation
Indices: 36843198--36843606 Score: 703
Period size: 137 Copynumber: 3.0 Consensus size: 137
36843188 TTGCAGCAAC
* * *
36843198 TAAACACTTCAATTTGCAGCACTTAAACATATCAATTATCAACATTTATACACCTCATTTACAGC
1 TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
* * *
36843263 GATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAACACTTAAACACTTCAATTTA
66 GATAAAACATCTCAATTTCTAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTA
*
36843328 CAGCATT
131 CAACATT
* *
36843335 TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTAGAAC
1 TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
36843400 GATAAAACATCTCAATTTCCTA-CAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTT
66 GATAAAACATCTCAATTT-CTAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTT
36843464 ACAACATT
130 ACAACATT
*
36843472 TAGACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
1 TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
*
36843537 GATAAAACATCTCAATTTCTAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTTAATTTA
66 GATAAAACATCTCAATTTCTAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTA
36843602 CAACA
131 CAACA
36843607 CTATCAAACT
Statistics
Matches: 257, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
136 3 0.01
137 252 0.98
138 2 0.01
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (137 bp):
TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
GATAAAACATCTCAATTTCTAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTA
CAACATT
Found at i:36847392 original size:22 final size:22
Alignment explanation
Indices: 36847336--36847400 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
36847326 ATTAAATGAG
36847336 TCAATAAAAACAAGAG-ATGTTAT
1 TCAATAAAAA-AA-AGTATGTTAT
36847359 TCAAT-AAAAAAAGTATGTTAT
1 TCAATAAAAAAAAGTATGTTAT
36847380 TCAATAAAAAAAAGTATGTTA
1 TCAATAAAAAAAAGTATGTTA
36847401 AGTAATTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
20 2 0.05
21 14 0.35
22 19 0.47
23 5 0.12
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (22 bp):
TCAATAAAAAAAAGTATGTTAT
Found at i:36848536 original size:41 final size:41
Alignment explanation
Indices: 36848475--36848670 Score: 243
Period size: 41 Copynumber: 4.8 Consensus size: 41
36848465 GGTGCTTTCT
* * * *
36848475 TTAGCGGTGATTTTGAAAAAGCGCCGCTAAAGACCCGAGTA
1 TTAGCGGCGCTTTTGTAAAAGCGCCGCTAAAGACCCGAGCA
*
36848516 TTAGCGGCGCTTTTGTAAAAGCGCTGCTAAAGACCCGAGCA
1 TTAGCGGCGCTTTTGTAAAAGCGCCGCTAAAGACCCGAGCA
* * * * *
36848557 TTAGCGGCTCTTTTTTAGAAGCGCCGCTGAAGACCAGAGCA
1 TTAGCGGCGCTTTTGTAAAAGCGCCGCTAAAGACCCGAGCA
*
36848598 TTAGCGGCG-TTTTGGGAAAAGCGCCGCTAAAGACCCGAGCA
1 TTAGCGGCGCTTTT-GTAAAAGCGCCGCTAAAGACCCGAGCA
**
36848639 TTAGCGGCGCTTTT-TCAAAAATGCCGCTAAAG
1 TTAGCGGCGCTTTTGT-AAAAGCGCCGCTAAAG
36848671 CCTCGAAAGG
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
40 4 0.03
41 124 0.94
42 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTGTAAAAGCGCCGCTAAAGACCCGAGCA
Found at i:36853691 original size:15 final size:15
Alignment explanation
Indices: 36853673--36853716 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
36853663 AAAATGATAA
36853673 AAAAAGAGAAAAAGG
1 AAAAAGAGAAAAAGG
*
36853688 AAAAAGA-AAAAA-T
1 AAAAAGAGAAAAAGG
*
36853701 AAAAAAAGAAAAAGG
1 AAAAAGAGAAAAAGG
36853716 A
1 A
36853717 GAGGCCAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 6 0.25
14 10 0.42
15 8 0.33
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (15 bp):
AAAAAGAGAAAAAGG
Found at i:36856063 original size:88 final size:88
Alignment explanation
Indices: 36855914--36856565 Score: 1065
Period size: 88 Copynumber: 7.4 Consensus size: 88
36855904 GAAATATGTA
* * * *
36855914 AGCCTGGTCTCCTTGAGCAGCAGTGGAGTAAGTTGAAAAATTACAGATCTTATTTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
*
36855979 TAGTGGAGCAGATCGAATACCCC
66 TAGTGGAGCAGATCGAAGACCCC
*
36856002 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAAATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
*
36856067 TAGTGGACCAGATCGAAGACCCC
66 TAGTGGAGCAGATCGAAGACCCC
*
36856090 AGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
36856155 TAGTGGAGCAGATCGAAGACCCC
66 TAGTGGAGCAGATCGAAGACCCC
*
36856178 AGCCTTGTCTCCCTGAGCACCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
* *
36856243 TAGTAGAGTAGATCGAAGACCCC
66 TAGTGGAGCAGATCGAAGACCCC
* * * * * *
36856266 AGCCTTTTGTCCTTGAGCAACAGTAGAGTAGGTTG-AAAATTACAGATCTTATCTCCCTAAGCAA
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
36856330 TAGTGGAGCAGATCGAAGACCCC
66 TAGTGGAGCAGATCGAAGACCCC
* *
36856353 AGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTT-AAAAATTACAGATCTTATCTCCCTAAGCAA
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
* * **
36856417 TAGTGGAGCAAATTGAAGACTTC
66 TAGTGGAGCAGATCGAAGACCCC
*
36856440 AGCCTTGTCTCCCTGAGTAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
36856505 TAGTGGAGCAGATCGAAGACCCC
66 TAGTGGAGCAGATCGAAGACCCC
*
36856528 AGCCTTGTCTCCCTGAACAGCAGTGGAGTAGGTTGAAA
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAA
36856566 GCAGAGTAGA
Statistics
Matches: 521, Mismatches: 41, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
87 157 0.30
88 364 0.70
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (88 bp):
AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAATTACAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACCCC
Found at i:36856677 original size:89 final size:88
Alignment explanation
Indices: 36856565--36856903 Score: 399
Period size: 89 Copynumber: 3.8 Consensus size: 88
36856555 GTAGGTTGAA
* * * * ** *
36856565 AGCAGAGTAGACTGAAGATAGCAGATCTTGCCTTTCTGTACCAACAGCGAAGCAAATCGAAGACA
1 AGCAGAGCAGACTAAAGACAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACA
* *
36856630 CTAGCCTTGCCTCCCTAGGTTTCC
66 CCAGCCTTGCCTCCCT-GGTTTAC
* *
36856654 AGCAGAGCAGACTAAAGACAGCAGATCTTGTCTTCCTGTACTGACAGCGAAGCAGATCAAAGACA
1 AGCAGAGCAGACTAAAGACAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACA
* *
36856719 CCAGCCTTGCCTCCTTGGCTTGAC
66 CCAGCCTTGCCTCCCTGG-TTTAC
* * * *
36856743 AGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGATA
1 AGCAGAGCAGACTAAAGACAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACA
* *
36856808 CCAGCCTTGCCTCCCTGGGTTGC
66 CCAGCCTTGCCTCCCTGGTTTAC
* * * * * * * * *
36856831 AGCGGAGCAGACTAAAAACACCAGATATTACCTTTCTGTATTGGCAGCGAAGCAGATCGAATACA
1 AGCAGAGCAGACTAAAGACAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACA
*
36856896 CCAACCTT
66 CCAGCCTT
36856904 ATTTCTTTGA
Statistics
Matches: 214, Mismatches: 35, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
88 65 0.30
89 149 0.70
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (88 bp):
AGCAGAGCAGACTAAAGACAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACA
CCAGCCTTGCCTCCCTGGTTTAC
Found at i:36856709 original size:45 final size:44
Alignment explanation
Indices: 36856659--36856798 Score: 151
Period size: 45 Copynumber: 3.1 Consensus size: 44
36856649 TTTCCAGCAG
36856659 AGCAGACTAAAGACAGCAGATCTTGTCTTCCTGTACTGACAGCGA
1 AGCAGACTAAAGACAGCAGATCTTG-CTTCCTGTACTGACAGCGA
* * * * *
36856704 AGCAGA-TCAAAGACACCAG-CCTTGCCTCCT-TGGCTTGACAGCGG
1 AGCAGACT-AAAGACAGCAGATCTTGCTTCCTGT-AC-TGACAGCGA
* *
36856748 AGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGA
1 AGCAGACTAAAGACAGCAGATCTTG-CTTCCTGTACTGACAGCGA
36856793 AGCAGA
1 AGCAGA
36856799 TCGAAGATAC
Statistics
Matches: 76, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
44 27 0.36
45 35 0.46
46 6 0.08
47 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.20
Consensus pattern (44 bp):
AGCAGACTAAAGACAGCAGATCTTGCTTCCTGTACTGACAGCGA
Found at i:36856752 original size:44 final size:43
Alignment explanation
Indices: 36856624--36856854 Score: 134
Period size: 45 Copynumber: 5.2 Consensus size: 43
36856614 AAGCAAATCG
* **
36856624 AAGACACTAGCCTTGCCTCCCTAGG-TTTCCAGC-AGAGCAGACTA
1 AAGACACCAGCCTTGCCT-CCT-GGCTTGACAGCGA-AGCAGACTA
* * * *
36856668 AAGACAGCAGATCTTGTCTTCCTGTAC-TGACAGCGAAGCAGA-TCA
1 AAGACACCAG-CCTTG-CCTCCTG-GCTTGACAGCGAAGCAGACT-A
* *
36856713 AAGACACCAGCCTTGCCTCCTTGGCTTGACAGCGGAGCAGACTG
1 AAGACACCAGCCTTGCCTCC-TGGCTTGACAGCGAAGCAGACTA
* * * * *
36856757 AAGATAGCAGATCTTGCCTTCCTGTAC-TGACAGCGAAGCAGA-TCG
1 AAGACACCAG-CCTTGCC-TCCTG-GCTTGACAGCGAAGCAGACT-A
* * *
36856802 AAGATACCAGCCTTGCCTCCCTGGGTTG-CAGCGGAGCAGACTA
1 AAGACACCAGCCTTGCCT-CCTGGCTTGACAGCGAAGCAGACTA
*
36856845 AAAACACCAG
1 AAGACACCAG
36856855 ATATTACCTT
Statistics
Matches: 145, Mismatches: 26, Indels: 33
0.71 0.13 0.16
Matches are distributed among these distances:
43 25 0.17
44 52 0.36
45 61 0.42
46 7 0.05
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (43 bp):
AAGACACCAGCCTTGCCTCCTGGCTTGACAGCGAAGCAGACTA
Found at i:36856805 original size:45 final size:44
Alignment explanation
Indices: 36856591--36856824 Score: 151
Period size: 44 Copynumber: 5.3 Consensus size: 44
36856581 GATAGCAGAT
* ** *
36856591 CTTGCCTTTCTGTACCAACAGCGAAGCAAATCGAAGACA-CTAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACAGC-AGC
* ** * *
36856635 CTTGCCTCCCTAGGT--TTCCAGC-AGAGCAGA-CTAAAGACAGCAGAT
1 CTTGCCTTCCT--GTACTGACAGCGA-AGCAGATC-GAAGACAGCAG-C
* * *
36856680 CTTGTCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACAGCAGC
* * * *
36856724 CTTGCC-TCCT-TGGCTTGACAGCGGAGCAGA-CTGAAGATAGCAGAT
1 CTTGCCTTCCTGT-AC-TGACAGCGAAGCAGATC-GAAGACAGCAG-C
* *
36856769 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGATACCAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACAGCAGC
*
36856813 CTTGCCTCCCTG
1 CTTGCCTTCCTG
36856825 GGTTGCAGCG
Statistics
Matches: 147, Mismatches: 26, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
42 1 0.01
43 10 0.07
44 64 0.44
45 61 0.41
46 10 0.07
47 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (44 bp):
CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACAGCAGC
Found at i:36857313 original size:41 final size:44
Alignment explanation
Indices: 36857224--36857536 Score: 139
Period size: 44 Copynumber: 7.2 Consensus size: 44
36857214 CTATTTCCCT
*
36857224 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTAT
1 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTAA
* * * *
36857268 GAAGTTGCAGTAGAGCAGA-TCACATC-CAG-TCTTATCTC-ACA
1 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTA-A
** * * ***
36857309 GAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-ATCCTATCTCCCT
1 GAAGTTGCAGTGGAGCAGA-TTAA-AACCACAGATCTTATCTCTAA
* * * **
36857353 GAAGTTGTAGTGGAGCGGGTTAAAACCACAGATCTTATCTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTAA
* * * *** * *
36857397 GAAGTTGTAATAGAGCAGA-TCGCA-TACAG-TCTTATATTCCT-A
1 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTAT-CT-CTAA
* * * * * ***
36857439 -AAGTTGTAGTGGAGTAGAAATAAGAA--ACAAATCCTATCTCCCT
1 GAAGTTGCAGTGGAGCAG-ATTAA-AACCACAGATCTTATCTCTAA
* * **
36857482 GAAGTTACAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTAA
36857526 GAAGTTGCAGT
1 GAAGTTGCAGT
36857537 AGAGTGGATC
Statistics
Matches: 200, Mismatches: 51, Indels: 36
0.70 0.18 0.13
Matches are distributed among these distances:
40 1 0.00
41 47 0.23
42 15 0.08
43 22 0.11
44 115 0.57
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
GAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTAA
Found at i:36857400 original size:129 final size:129
Alignment explanation
Indices: 36857168--36858196 Score: 1443
Period size: 129 Copynumber: 8.0 Consensus size: 129
36857158 CAACAACGAA
* * * * * *
36857168 TCTTATCTCCTTGAGGTTACAGTGGAACAGATTA-AAGAAATC-AATCCTATTTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAA-CAAATCCTATCTCCCTGAAGTTG
* * *
36857231 CAGTGGAGCAGATTAAAACCACAGATCTTATCTCTATGAAGTTGCAGTAGAGCAGATCACATCCA
64 CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCA
36857296 G
129 G
* * * *
36857297 TCTTATCTCACAGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * * *
36857362 GTGGAGCGGGTTAAAACCACAGATCTTATCTCTCTGAAGTTGTAATAGAGCAGATCGCATACAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
* * * * * * * *
36857426 TCTTATATTCCTAAAGTTGTAGTGGAGTAGAAATAAGAAACAAATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * **
36857491 GTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCCTA-
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCC-AG
* * * *
36857555 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * * *
36857620 GTGGAGCGAATTAAAACCACAAATCTTATCTTTCTAAAGTTGCAGTAGAGCAGATCGCATCCAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
* ** *
36857684 TCTTATCTCCCTGAAGTTGCGGTAAAGCATACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * * * *
36857749 GTGGAACGGATTAAAACCATAGATCTTATCGCTCTGAAGTTGCAGTAGAGTAGATAGCATCCAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
* **
36857813 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* *
36857878 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCACATCCAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
* *
36857942 TATTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * * *
36858007 GTGGAGCGAATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCCAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
* *
36858071 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACAAATCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
* * * *
36858136 GTGCAGCGGATTAAAACCACAAATCTCATATCTCTGAAGTTGCAGTAGAGCAGATCGCATC
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
36858197 AAAATTATCT
Statistics
Matches: 790, Mismatches: 106, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
128 3 0.00
129 786 0.99
130 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACAAATCCTATCTCCCTGAAGTTGCA
GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
Found at i:36858579 original size:24 final size:26
Alignment explanation
Indices: 36858533--36858584 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
36858523 CCAGCCGAAT
36858533 AAACACCAAAAGAAAAATAAAAAATA
1 AAACACCAAAAGAAAAATAAAAAATA
* *
36858559 AAACA-CAAAA-ATAAATAAAAATTA
1 AAACACCAAAAGAAAAATAAAAAATA
36858583 AA
1 AA
36858585 TAACAGTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
25 5 0.21
26 5 0.21
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (26 bp):
AAACACCAAAAGAAAAATAAAAAATA
Found at i:36866876 original size:23 final size:25
Alignment explanation
Indices: 36866845--36866896 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
36866835 AATATATTAA
36866845 TAATATAAATA-AAATATTA-C-TTT
1 TAATATAAATATAAA-ATTATCATTT
*
36866868 TAATGTAAATATAAAATTATCATTT
1 TAATATAAATATAAAATTATCATTT
36866893 TAAT
1 TAAT
36866897 CTATCAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 14 0.56
24 4 0.16
25 7 0.28
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (25 bp):
TAATATAAATATAAAATTATCATTT
Found at i:36869816 original size:13 final size:13
Alignment explanation
Indices: 36869798--36869822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36869788 TCTTAGCTTT
36869798 TATATACTTATTA
1 TATATACTTATTA
36869811 TATATACTTATT
1 TATATACTTATT
36869823 CATTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATACTTATTA
Found at i:36870578 original size:42 final size:40
Alignment explanation
Indices: 36870494--36870636 Score: 173
Period size: 40 Copynumber: 3.5 Consensus size: 40
36870484 ACCAAAAATT
36870494 TATTTTAAAAATTAAAACAAAAATTAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAA-AAAAATTAAAAAAGTATTTTAAAAA
36870537 TATTTTAAAATTAAAAAAAATTAAAAAAGTATTTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAGTA-TTTTAAAAA
* * * *
36870578 -ATTTAAAAACTTTAAAAAATTTAAAAAAAGTATTTT-AAAG
1 TATTTTAAAA-TTAAAAAAAATT-AAAAAAGTATTTTAAAAA
*
36870618 TATTTTAAAAATAAAAAAA
1 TATTTTAAAATTAAAAAAA
36870637 TAAAAATATT
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
40 34 0.38
41 34 0.38
42 15 0.17
43 6 0.07
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAGTATTTTAAAAA
Found at i:36870593 original size:18 final size:18
Alignment explanation
Indices: 36870570--36870604 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36870560 AAAAAGTATT
36870570 TTTAAAAAATTTAAAAAC
1 TTTAAAAAATTTAAAAAC
36870588 TTTAAAAAATTTAAAAA
1 TTTAAAAAATTTAAAAA
36870605 AAGTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TTTAAAAAATTTAAAAAC
Found at i:36870606 original size:10 final size:10
Alignment explanation
Indices: 36870543--36870606 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 10
36870533 AAAATATTTT
36870543 AAAA-TTAAA
1 AAAATTTAAA
*
36870552 AAAAATTAAA
1 AAAATTTAAA
*
36870562 AAAGTATTTTTAA
1 AAA--A-TTTAAA
36870575 AAAATTT-AA
1 AAAATTTAAA
*
36870584 AAACTTT-AA
1 AAAATTTAAA
36870593 AAAATTTAAA
1 AAAATTTAAA
36870603 AAAA
1 AAAA
36870607 GTATTTTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
9 20 0.43
10 17 0.37
11 1 0.02
12 1 0.02
13 7 0.15
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:36872045 original size:8 final size:8
Alignment explanation
Indices: 36872032--36872131 Score: 56
Period size: 8 Copynumber: 11.2 Consensus size: 8
36872022 TATAAAAATT
36872032 ATTTTAAA
1 ATTTTAAA
36872040 ATTTTAAA
1 ATTTTAAA
*
36872048 ACTTTAAAA
1 A-TTTTAAA
36872057 ATTATTAAA
1 ATT-TTAAA
* *
36872066 AGTATAAAA
1 A-TTTTAAA
*
36872075 ATTATAATA
1 ATTTTAA-A
36872084 TATATTTATACA
1 -AT-TTTA-A-A
36872096 ATTTTTAATA
1 A-TTTTAA-A
* *
36872106 TTTTTAAT
1 ATTTTAAA
36872114 ATTTTAAA
1 ATTTTAAA
36872122 ATTTTAAA
1 ATTTTAAA
36872130 AT
1 AT
36872132 AATTTTTATA
Statistics
Matches: 70, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
8 30 0.43
9 24 0.34
10 5 0.07
11 8 0.11
12 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (8 bp):
ATTTTAAA
Found at i:36872047 original size:20 final size:19
Alignment explanation
Indices: 36871987--36872048 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
36871977 GCAATTAATT
36871987 AATTTTTTAAAAATTTTAAA
1 AATTTTTT-AAAATTTTAAA
***
36872007 AATTTAGAAGAAATTTATAAA
1 AATTTTTTA-AAATTT-TAAA
36872028 AATTATTTTAAAATTTTAAA
1 AATT-TTTTAAAATTTTAAA
36872048 A
1 A
36872049 CTTTAAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.03
20 16 0.48
21 14 0.42
22 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
AATTTTTTAAAATTTTAAA
Found at i:36872164 original size:9 final size:9
Alignment explanation
Indices: 36872033--36872171 Score: 52
Period size: 9 Copynumber: 14.9 Consensus size: 9
36872023 ATAAAAATTA
36872033 TTTTAAAA-
1 TTTTAAAAT
*
36872041 TTTTAAAAC
1 TTTTAAAAT
*
36872050 TTTAAAAAT
1 TTTTAAAAT
*
36872059 TATTAAAA-
1 TTTTAAAAT
* * *
36872067 GTATAAAAA
1 TTTTAAAAT
*
36872076 TTATAATATAT
1 TTTTAA-A-AT
*
36872087 ATTTATACAAT
1 -TTT-TAAAAT
*
36872098 TTTTAATAT
1 TTTTAAAAT
*
36872107 TTTTAATA-
1 TTTTAAAAT
36872115 TTTTAAAAT
1 TTTTAAAAT
*
36872124 TTTAAAATAAT
1 TTT-TAA-AAT
*
36872135 TTTTATAATT
1 TTTTA-AAAT
*
36872145 TTCTTCTAAAT
1 TT-TT-AAAAT
36872156 TTTTAAAA-
1 TTTTAAAAT
36872164 TTTTAAAA
1 TTTTAAAA
36872172 AAATAATTAA
Statistics
Matches: 99, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
8 28 0.28
9 36 0.36
10 13 0.13
11 17 0.17
12 3 0.03
13 2 0.02
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:36872172 original size:9 final size:9
Alignment explanation
Indices: 36871991--36872130 Score: 70
Period size: 9 Copynumber: 14.9 Consensus size: 9
36871981 TTAATTAATT
36871991 TTTTAAAAA
1 TTTTAAAAA
36872000 TTTTAAAAA
1 TTTTAAAAA
*
36872009 TTTAGAAGAAA
1 TTT-TAA-AAA
36872020 TTTATAAAAA
1 TTT-TAAAAA
*
36872030 TTATTTTAAAA
1 -T-TTTAAAAA
36872041 TTTT-AAAA
1 TTTTAAAAA
*
36872049 CTTTAAAAA
1 TTTTAAAAA
36872058 TTATT-AAAA
1 TT-TTAAAAA
* *
36872067 GTATAAAAA
1 TTTTAAAAA
* *
36872076 TTATAATATA
1 TTTTAA-AAA
*
36872086 TATTTATACAA
1 T-TTTA-AAAA
* *
36872097 TTTTTAATA
1 TTTTAAAAA
* *
36872106 TTTTTAATA
1 TTTTAAAAA
36872115 TTTT-AAAA
1 TTTTAAAAA
36872123 TTTTAAAA
1 TTTTAAAA
36872131 TAATTTTTAT
Statistics
Matches: 104, Mismatches: 16, Indels: 22
0.73 0.11 0.15
Matches are distributed among these distances:
8 15 0.14
9 52 0.50
10 14 0.13
11 20 0.19
12 3 0.03
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:36872175 original size:20 final size:20
Alignment explanation
Indices: 36872115--36872175 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
36872105 ATTTTTAATA
*
36872115 TTTTAAAATTTTAAAATAAT
1 TTTTAAAATTTTAAAAAAAT
* ****
36872135 TTTTATAATTTTCTTCTAAAT
1 TTTTAAAATTTT-AAAAAAAT
36872156 TTTTAAAATTTTAAAAAAAT
1 TTTTAAAATTTTAAAAAAAT
36872176 AATTAATTGC
Statistics
Matches: 29, Mismatches: 11, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTTAAAATTTTAAAAAAAT
Found at i:36874445 original size:18 final size:17
Alignment explanation
Indices: 36874422--36874464 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
36874412 AAACGTATAA
36874422 AAATATATAAAAAATTTT
1 AAATATATAAAAAA-TTT
* *
36874440 AAATATACAATAAATTT
1 AAATATATAAAAAATTT
36874457 -AATATATA
1 AAATATATA
36874465 GATAGTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 7 0.32
17 3 0.14
18 12 0.55
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATATATAAAAAATTT
Found at i:36874634 original size:20 final size:20
Alignment explanation
Indices: 36874572--36874634 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
36874562 TATCCAACTG
36874572 AATGCTTCAACAATAGCAGC
1 AATGCTTCAACAATAGCAGC
*** *
36874592 AATGCCTTTGGC--TCG-AG-
1 AATG-CTTCAACAATAGCAGC
36874609 AATGCTTCAACAATAGCAGC
1 AATGCTTCAACAATAGCAGC
36874629 AATGCT
1 AATGCT
36874635 GAGAGTCAGA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 4 0.13
19 4 0.13
20 10 0.33
21 4 0.13
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (20 bp):
AATGCTTCAACAATAGCAGC
Found at i:36875395 original size:83 final size:84
Alignment explanation
Indices: 36875294--36875457 Score: 224
Period size: 87 Copynumber: 1.9 Consensus size: 84
36875284 AAATTCTGTA
*
36875294 GTATTCAATATGGAGTAATTTTAAAAATTTCC-ATAAAGATACAAATATTTCCATTAAA-GGAGT
1 GTATTCAATATGGAGTAATTTTAAAAATTTCCAATAAAGATACAAACATTTCCATTAAATGG-GT
*
36875357 CTTTAAATTAGTTTTTATAG
65 CTTTAAATAAGTTTTTATAG
* * * *
36875377 GTATTCAATATGGGGTAATTTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGG
1 GTATTCAATATGGAGTAATTTTAAAAATTTCC---AATAAAGATACAAACATTTCCATTAAATGG
36875442 GTCTTTAAATAAGTTT
63 GTCTTTAAATAAGTTT
36875458 GAAAATTTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
83 30 0.43
87 38 0.54
88 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (84 bp):
GTATTCAATATGGAGTAATTTTAAAAATTTCCAATAAAGATACAAACATTTCCATTAAATGGGTC
TTTAAATAAGTTTTTATAG
Found at i:36875465 original size:59 final size:59
Alignment explanation
Indices: 36875396--36875519 Score: 248
Period size: 59 Copynumber: 2.1 Consensus size: 59
36875386 ATGGGGTAAT
36875396 TTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGGGTCTTTAAATAAG
1 TTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGGGTCTTTAAATAAG
36875455 TTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGGGTCTTTAAATAAG
1 TTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGGGTCTTTAAATAAG
36875514 TTTGAA
1 TTTGAA
36875520 TAAAATCAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.36
Consensus pattern (59 bp):
TTTGAAAATTTCCATAAATAAAGATACAAACCTTTTCATTAAATGGGTCTTTAAATAAG
Found at i:36879229 original size:27 final size:27
Alignment explanation
Indices: 36879195--36879372 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36879185 TAAATTGTAC
36879195 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36879222 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36879248 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36879276 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36879304 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36879331 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36879358 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36879373 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36879309 original size:82 final size:81
Alignment explanation
Indices: 36879196--36879351 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36879186 AAATTGTACA
* *
36879196 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36879260 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36879277 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36879342 TGCGAGTTGA
65 TGCGAATTGA
36879352 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36879363 original size:82 final size:81
Alignment explanation
Indices: 36879192--36879372 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36879182 GGTTAAATTG
* *
36879192 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36879257 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36879273 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36879337 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36879355 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36879373 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36887061 original size:27 final size:27
Alignment explanation
Indices: 36887027--36887204 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36887017 TAAATTGTAC
36887027 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36887054 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36887080 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36887108 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36887136 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36887163 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36887190 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36887205 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36887141 original size:82 final size:81
Alignment explanation
Indices: 36887028--36887183 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36887018 AAATTGTACA
* *
36887028 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36887092 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36887109 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36887174 TGCGAGTTGA
65 TGCGAATTGA
36887184 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36887195 original size:82 final size:81
Alignment explanation
Indices: 36887024--36887204 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36887014 GGTTAAATTG
* *
36887024 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36887089 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36887105 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36887169 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36887187 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36887205 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36890120 original size:22 final size:22
Alignment explanation
Indices: 36890072--36890120 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
36890062 TCATCAATGG
*
36890072 AAAATTGGAAAAAGAAAATGAT
1 AAAATTGGAAAAAGAAAATAAT
* ** *
36890094 TAAATTGGAAAGTGGAAATAAT
1 AAAATTGGAAAAAGAAAATAAT
36890116 AAAAT
1 AAAAT
36890121 ATGATAAATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.22
Consensus pattern (22 bp):
AAAATTGGAAAAAGAAAATAAT
Found at i:36890530 original size:20 final size:20
Alignment explanation
Indices: 36890472--36890522 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
36890462 TGTAAAGATG
36890472 TAAAATTTATGGAAAAATTA
1 TAAAATTTATGGAAAAATTA
36890492 TAAAATTTATGGAAAAATTA
1 TAAAATTTATGGAAAAATTA
36890512 TAAAATTTATG
1 TAAAATTTATG
36890523 AATTAATTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (20 bp):
TAAAATTTATGGAAAAATTA
Found at i:36890678 original size:5 final size:5
Alignment explanation
Indices: 36890668--36890717 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
36890658 TCCTAGGATG
* *
36890668 TGAAT TGAAT TGAAT TGAAT ATGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
36890718 TCTAAATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 29 0.74
6 10 0.26
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (5 bp):
TGAAT
Found at i:36890694 original size:11 final size:11
Alignment explanation
Indices: 36890668--36890706 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
36890658 TCCTAGGATG
36890668 TGAATTGAAT-
1 TGAATTGAATA
36890678 TGAATTGAATA
1 TGAATTGAATA
36890689 TGAATTGAATA
1 TGAATTGAATA
36890700 TGAATTG
1 TGAATTG
36890707 TATTAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 10 0.36
11 18 0.64
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (11 bp):
TGAATTGAATA
Found at i:36890694 original size:16 final size:15
Alignment explanation
Indices: 36890668--36890717 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
36890658 TCCTAGGATG
36890668 TGAATTGAATTGAAT
1 TGAATTGAATTGAAT
36890683 TGAATATGAATTGAAT
1 TGAAT-TGAATTGAAT
* *
36890699 ATGAATTGTATTAAAT
1 -TGAATTGAATTGAAT
36890715 TGA
1 TGA
36890718 TCTAAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 8 0.26
16 18 0.58
17 5 0.16
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (15 bp):
TGAATTGAATTGAAT
Found at i:36891231 original size:26 final size:26
Alignment explanation
Indices: 36891167--36891233 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
36891157 ATGAGTGTCC
*
36891167 ATTATATGGCTCTTCGTGAGCTTACCG
1 ATTA-ATGGCTCTTCGTGAGCTTACCA
* * *
36891194 ATTAAAGACTCTTTGTGAGCTT-CCAA
1 ATTAATGGCTCTTCGTGAGCTTACC-A
36891220 ATTAATGGCTCTTC
1 ATTAATGGCTCTTC
36891234 AGAGTTTCCC
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.06
26 26 0.81
27 4 0.12
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (26 bp):
ATTAATGGCTCTTCGTGAGCTTACCA
Found at i:36894319 original size:50 final size:50
Alignment explanation
Indices: 36894174--36894320 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 50
36894164 TTATTGAGGT
* *
36894174 TATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCAC-GA
1 TATGAGAGGTCCCACGTAAGACTATGTCTGGGACATGGCATTGGCACTGA
* * * * *
36894223 GATGAGAGGTCCCCCGTAAGACTATGTCTAGAACATGGCATGGGCACTGA
1 TATGAGAGGTCCCACGTAAGACTATGTCTGGGACATGGCATTGGCACTGA
** * * * *
36894273 TATGAGAACTCCCATGTAAGACTATATCTGGGATATGACATTGGCACT
1 TATGAGAGGTCCCACGTAAGACTATGTCTGGGACATGGCATTGGCACT
36894321 ACACGAACAC
Statistics
Matches: 79, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
49 40 0.51
50 39 0.49
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAGACTATGTCTGGGACATGGCATTGGCACTGA
Found at i:36894590 original size:20 final size:20
Alignment explanation
Indices: 36894565--36894603 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36894555 TGAGTTATTT
36894565 AAGTAAG-CAAGTAAGTAAAC
1 AAGTAAGACAA-TAAGTAAAC
36894585 AAGTAAGACAATAAGTAAA
1 AAGTAAGACAATAAGTAAA
36894604 GAAGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (20 bp):
AAGTAAGACAATAAGTAAAC
Found at i:36900680 original size:36 final size:37
Alignment explanation
Indices: 36900596--36900732 Score: 136
Period size: 38 Copynumber: 3.6 Consensus size: 37
36900586 TGACCATCAT
36900596 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATC
1 CGGACTAAGATCCGAA-GCA-TT-TGCGAGATACTAAATC
*
36900636 CGGACTAAGATCCGAAGCATTTGCGA-ATACTAATTC
1 CGGACTAAGATCCGAAGCATTTGCGAGATACTAAATC
* * * *
36900672 TGGGCTAAG-CCCGAAGCATTTGTGCGAGTTACTAAATC
1 CGGACTAAGATCCGAAGCA-TT-TGCGAGATACTAAATC
**
36900710 CGGGTTAAG-TCCCGAAGCATTTG
1 CGGACTAAGAT-CCGAAGCATTTG
36900733 TGCGAATTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
35 8 0.10
36 18 0.21
37 12 0.14
38 19 0.23
39 11 0.13
40 16 0.19
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (37 bp):
CGGACTAAGATCCGAAGCATTTGCGAGATACTAAATC
Found at i:36900728 original size:39 final size:39
Alignment explanation
Indices: 36900607--36900771 Score: 175
Period size: 39 Copynumber: 4.3 Consensus size: 39
36900597 GGACTAAGAT
*
36900607 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-
1 CCGAA-GCATTTGTGCGAGATACTAAATCCGGGCTAAG-TC
* *
36900647 CCGAAGCA-TT-TGCGA-ATACTAATTCTGGGCTAAG-C
1 CCGAAGCATTTGTGCGAGATACTAAATCCGGGCTAAGTC
* *
36900682 CCGAAGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGCATTTGTGCGAGATACTAAATCCGGGCTAAGTC
*
36900721 CCGAAGCATTTGTGCGA-ATTACTATAA-CC-GGCTATGTC
1 CCGAAGCATTTGTGCGAGA-TACTA-AATCCGGGCTAAGTC
36900759 CCGAAGGCATTTG
1 CCGAA-GCATTTG
36900772 AACAGGAGCT
Statistics
Matches: 107, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
35 8 0.07
36 18 0.17
37 10 0.09
38 29 0.27
39 35 0.33
40 7 0.07
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGAAGCATTTGTGCGAGATACTAAATCCGGGCTAAGTC
Found at i:36908412 original size:40 final size:39
Alignment explanation
Indices: 36908355--36908539 Score: 175
Period size: 39 Copynumber: 4.7 Consensus size: 39
36908345 TTGAATGATG
*
36908355 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCA-A
* *
36908395 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* *
36908434 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* * * *
36908473 TCCGG-CTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATAC-CAA
**
36908511 TCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC
36908540 GAGTTACTAT
Statistics
Matches: 131, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 22 0.17
38 12 0.09
39 49 0.37
40 39 0.30
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
Found at i:36908540 original size:40 final size:40
Alignment explanation
Indices: 36908355--36908576 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
36908345 TTGAATGATG
* * * *
36908355 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
36908395 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36908434 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36908473 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36908511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36908552 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36908577 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
37 23 0.14
38 11 0.07
39 49 0.30
40 71 0.43
41 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36927521 original size:63 final size:59
Alignment explanation
Indices: 36927420--36927561 Score: 158
Period size: 63 Copynumber: 2.3 Consensus size: 59
36927410 AATCTGACTT
* * * * * *
36927420 AGACAAGTATTAATGCGGTTCAAACTAAGACACCATTAATAGACTTAGAACAACTAAACAATC
1 AGACATGTAATAATGCTGTACAAACTAAGACACAATTAATAAACTT--AACAA--AAACAATC
* * * *
36927483 AGACATGTAATAATGTTGTACAAACTAGGACATAATTAATAAACTTAACAAAAATAATC
1 AGACATGTAATAATGCTGTACAAACTAAGACACAATTAATAAACTTAACAAAAACAATC
36927542 AGACATGTAATAATGCTGTA
1 AGACATGTAATAATGCTGTA
36927562 TGAAATCAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
59 26 0.38
61 5 0.07
63 37 0.54
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (59 bp):
AGACATGTAATAATGCTGTACAAACTAAGACACAATTAATAAACTTAACAAAAACAATC
Found at i:36936095 original size:45 final size:45
Alignment explanation
Indices: 36935976--36936097 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 45
36935966 TACTAGTATG
* * * **
36935976 GTGTGGATAAACCACTCATTGGTACAAATAAAATTTGCTAGTACA
1 GTGTGGATAAACCACTAATCGGTACAGATAAAAACTGCTAGTACA
** *
36936021 GTGTAAATAAACCACTAATCGATACAGATAAAAACTGCTAGTACA
1 GTGTGGATAAACCACTAATCGGTACAGATAAAAACTGCTAGTACA
**
36936066 GTGTGGATAAACCACTAATCGGTGTAGATAAA
1 GTGTGGATAAACCACTAATCGGTACAGATAAA
36936098 TTGCTCAGAC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (45 bp):
GTGTGGATAAACCACTAATCGGTACAGATAAAAACTGCTAGTACA
Done.