Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 127 of 211
Found at i:36943082 original size:51 final size:51
Alignment explanation
Indices: 36942962--36943149 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 51
36942952 TATCATTCGA
* * * *
36942962 TACACGTAGTACCCTTCACATAGTACTACACACGTGA-TCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACTAAAACCTTCCGG
* * *
36943012 TTCACGTGGTAGCGTGCACATAGTACTACACACGTGACTAAAACCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACTAAAACCTTCCGG
* * * ** * *
36943063 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACTAAAACCT-TCCGG
* *
36943114 TACACGTAGTAGCCTGCACTTAGCACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
36943150 TTTATAAGCA
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 32 0.28
51 82 0.71
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACTAAAACCTTCCGG
Found at i:36953759 original size:79 final size:81
Alignment explanation
Indices: 36953623--36953807 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36953613 TTGAATGATG
* *
36953623 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36953687 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36953702 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36953764 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36953782 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36953808 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36953821 original size:40 final size:40
Alignment explanation
Indices: 36953624--36953807 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36953614 TGAATGATGT
* * * *
36953624 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36953664 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36953704 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36953742 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36953783 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36953808 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36953829 original size:79 final size:79
Alignment explanation
Indices: 36953676--36953840 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36953666 GGACTAAGAT
* * **
36953676 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36953741 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36953755 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36953818 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36953834 CCGAAGG
1 CCGAAGG
36953841 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36961701 original size:79 final size:81
Alignment explanation
Indices: 36961565--36961749 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36961555 TTGAATGATG
* *
36961565 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36961629 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36961644 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36961706 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36961724 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36961750 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36961763 original size:40 final size:40
Alignment explanation
Indices: 36961566--36961749 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36961556 TGAATGATGT
* * * *
36961566 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36961606 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36961646 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36961684 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36961725 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36961750 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36961771 original size:79 final size:79
Alignment explanation
Indices: 36961618--36961782 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36961608 GGACTAAGAT
* * **
36961618 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36961683 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36961697 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36961760 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36961776 CCGAAGG
1 CCGAAGG
36961783 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36969961 original size:27 final size:27
Alignment explanation
Indices: 36969931--36970108 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36969921 ATATTGAGTC
* * * *
36969931 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36969958 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36969985 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36970013 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36970040 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36970067 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36970094 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36970109 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36970070 original size:82 final size:81
Alignment explanation
Indices: 36969952--36970107 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36969942 TGCTATATAA
* *
36969952 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36970017 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36970034 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36970098 CACTTAGTGC
65 CACTTAGTGC
36970108 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36974924 original size:139 final size:139
Alignment explanation
Indices: 36974674--36974953 Score: 506
Period size: 139 Copynumber: 2.0 Consensus size: 139
36974664 ACCATCTGGT
*
36974674 TTATTACAGCCGATTATGATTCTTGAGTGGAAATGGGATAGAGTGACTAAGGATTTTGTGTCGGG
1 TTATTACAGCCGATTATGATTCTTGAGTGGAAATGGGATAGAGTGACTAAGGATTTTGTGTCAGG
*
36974739 ATTGCCCCTATCTCTGAAAAAGAAAGATGCGATCTGGGTTATAGTTAACAGATTAACAAAATCAA
66 ATTGCCCCTATCTCTGAAAAAGAAAGACGCGATCTGGGTTATAGTTAACAGATTAACAAAATCAA
36974804 CTCATTTCA
131 CTCATTTCA
**
36974813 TTATTACAGCCGATTATGATTCTTGAGTGGAAATGGGATAGAGTGACTATTGATTTTGTGTCAGG
1 TTATTACAGCCGATTATGATTCTTGAGTGGAAATGGGATAGAGTGACTAAGGATTTTGTGTCAGG
* *
36974878 ATTGCCCCTATCTCTGAAAAAGAAAGACGCGATCTGGGTTATAGTTAACAGATTAACGAAATCAG
66 ATTGCCCCTATCTCTGAAAAAGAAAGACGCGATCTGGGTTATAGTTAACAGATTAACAAAATCAA
36974943 CTCATTTCA
131 CTCATTTCA
36974952 TT
1 TT
36974954 CCAGTACAAA
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 135 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (139 bp):
TTATTACAGCCGATTATGATTCTTGAGTGGAAATGGGATAGAGTGACTAAGGATTTTGTGTCAGG
ATTGCCCCTATCTCTGAAAAAGAAAGACGCGATCTGGGTTATAGTTAACAGATTAACAAAATCAA
CTCATTTCA
Found at i:36976298 original size:50 final size:50
Alignment explanation
Indices: 36976235--36976355 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 50
36976225 AAATGTCATA
** ** * *
36976235 TCCCAGATTTGGTCTTACATGAGAGTTCTCAT-ATCGGTGCCCA-TGGCATG
1 TCCCAGACATGGTCTTACATGAGACCTCTCATCAT-GGTGCCAACT-CCATG
** *
36976285 TCCCAGACATGGTCTTACGGGGGACCTCTCATCATGGTGCCAACTCCATG
1 TCCCAGACATGGTCTTACATGAGACCTCTCATCATGGTGCCAACTCCATG
36976335 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
36976356 GGATCTCATT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
50 55 0.95
51 3 0.05
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGACCTCTCATCATGGTGCCAACTCCATG
Found at i:36986359 original size:12 final size:12
Alignment explanation
Indices: 36986329--36986360 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
36986319 TTCAATTTCC
*
36986329 TTTTTTCTTTTT
1 TTTTTTGTTTTT
36986341 TTTTTTGTTTTT
1 TTTTTTGTTTTT
36986353 TTTTTTGT
1 TTTTTTGT
36986361 ATAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:36995823 original size:26 final size:25
Alignment explanation
Indices: 36995794--36995842 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
36995784 GCAAAATAGA
* *
36995794 GATAGTCTATTGGGGCAGTAAATAAG
1 GATA-TCTACTGGGACAGTAAATAAG
*
36995820 GATATCTGCTGGGACAGTAAATA
1 GATATCTACTGGGACAGTAAATA
36995843 CAGAACAGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (25 bp):
GATATCTACTGGGACAGTAAATAAG
Found at i:36995866 original size:33 final size:32
Alignment explanation
Indices: 36995820--36995884 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
36995810 AGTAAATAAG
*
36995820 GATATCTGCTGGGACAGTAAATACAGAACAGA
1 GATATCTGCTGGGACAGTAAACACAGAACAGA
*
36995852 GATAGTCTGCTGGGACAGTAAACACATAACAGA
1 GATA-TCTGCTGGGACAGTAAACACAGAACAGA
36995885 TAGTCCATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (32 bp):
GATATCTGCTGGGACAGTAAACACAGAACAGA
Found at i:37000692 original size:6 final size:6
Alignment explanation
Indices: 37000681--37000710 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
37000671 ATCTTGTGGC
37000681 AAAAAG AAAAAG AAAAA- AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
37000711 TGGTAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:37000701 original size:11 final size:12
Alignment explanation
Indices: 37000681--37000710 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
37000671 ATCTTGTGGC
37000681 AAAAAGAAAAAG
1 AAAAAGAAAAAG
37000693 AAAAA-AAAAAG
1 AAAAAGAAAAAG
37000704 AAAAAGA
1 AAAAAGA
37000711 TGGTAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:37001402 original size:39 final size:39
Alignment explanation
Indices: 37001328--37001402 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
37001318 AGATGTTTCC
* *
37001328 GAGTATTGTGATATATGCTTGACCGTTATGCGATTAAAT
1 GAGTATTGTGATATATGCTTGACCATTAAGCGATTAAAT
* * *
37001367 GAGTATTGCT-ATATGTGCTTGAGCATTAAGTGATTA
1 GAGTATTG-TGATATATGCTTGACCATTAAGCGATTA
37001403 TATGTGTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 29 0.97
40 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (39 bp):
GAGTATTGTGATATATGCTTGACCATTAAGCGATTAAAT
Found at i:37003779 original size:17 final size:17
Alignment explanation
Indices: 37003757--37003790 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37003747 TTTCGCAGAC
37003757 TTAGAGTTTGACACTTG
1 TTAGAGTTTGACACTTG
37003774 TTAGAGTTTGACACTTG
1 TTAGAGTTTGACACTTG
37003791 CTTCAATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (17 bp):
TTAGAGTTTGACACTTG
Found at i:37008399 original size:41 final size:40
Alignment explanation
Indices: 37008325--37008445 Score: 113
Period size: 41 Copynumber: 3.0 Consensus size: 40
37008315 TTAGTGAAAT
* *
37008325 AATTT-AGACTTTACGTCTAGCAGGCT-TGATGCCGGTGAA
1 AATTTCAGACTTTAAGTCTAGCAGGCTAAG-TGCCGGTGAA
* *
37008364 ACATTTCAGACTATATGTCTAGCAGGCTAAGTGCCGGTGTACA
1 A-ATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTG-A-A
* * * *
37008407 AA-ATCAGGCTTTAAGCCTAGTAGGCTAAGTGCCGGTGAA
1 AATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
37008446 TCTGTTTAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
39 2 0.03
40 5 0.07
41 56 0.82
42 3 0.04
43 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (40 bp):
AATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
Found at i:37012781 original size:29 final size:29
Alignment explanation
Indices: 37012749--37012823 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
37012739 TGTTTCTATT
* *
37012749 AAAAA-GAGAGAATTTTCGTTTTCATCCC
1 AAAAAGGAGAGAATTTTCATTTTCACCCC
* *
37012777 AAAAAGGAGAGAATTTTTATTTTTACCCC
1 AAAAAGGAGAGAATTTTCATTTTCACCCC
37012806 AAAAAGGAGAGAACTTTT
1 AAAAAGGAGAGAA-TTTT
37012824 TTTTAATTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 32 0.78
30 4 0.10
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (29 bp):
AAAAAGGAGAGAATTTTCATTTTCACCCC
Found at i:37015411 original size:14 final size:14
Alignment explanation
Indices: 37015388--37015420 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37015378 TTCATTAAAC
37015388 TACAGAGGCCCAAA
1 TACAGAGGCCCAAA
*
37015402 TACAGTGGCCCAAA
1 TACAGAGGCCCAAA
37015416 -ACAGA
1 TACAGA
37015421 TGAAAAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.42, C:0.27, G:0.21, T:0.09
Consensus pattern (14 bp):
TACAGAGGCCCAAA
Found at i:37019079 original size:30 final size:30
Alignment explanation
Indices: 37019045--37019101 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
37019035 TGACGTGCTT
*
37019045 TAATGATTCGGAATTATTTTTAAGATCTAA
1 TAATGATTCAGAATTATTTTTAAGATCTAA
*
37019075 TAATGATTCAGATTTATTTTTAAGATC
1 TAATGATTCAGAATTATTTTTAAGATC
37019102 CATTAGATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (30 bp):
TAATGATTCAGAATTATTTTTAAGATCTAA
Found at i:37023220 original size:29 final size:29
Alignment explanation
Indices: 37023179--37023234 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37023169 ATACTATACC
* *
37023179 ATATATTATATTTTAAGGTATTAGATTGT
1 ATATATTATATTTCAAGATATTAGATTGT
*
37023208 ATATATTATATTTCAAGATTTTAGATT
1 ATATATTATATTTCAAGATATTAGATT
37023235 CCTAGTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.52
Consensus pattern (29 bp):
ATATATTATATTTCAAGATATTAGATTGT
Found at i:37024325 original size:5 final size:5
Alignment explanation
Indices: 37024269--37024310 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
37024259 CTACTACATT
*
37024269 ATATA ATATC ATATC ATATC ATATC ATATC ATATC ATATC AT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC AT
37024311 GTAGTATATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATC
Found at i:37024977 original size:124 final size:125
Alignment explanation
Indices: 37024663--37024979 Score: 530
Period size: 126 Copynumber: 2.5 Consensus size: 125
37024653 GATAAACTCA
* *
37024663 AAGCAGGATGCTTTATCAGAAGAATTTCT-AAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAA
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAA-TCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* *
37024727 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGGAAATAGTATAAAAAAATGTTTC
65 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAA-GCTTC
*
37024789 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
*
37024854 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAACA-CTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAAGCTTC
* *
37024913 AAGCAAGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
37024978 AG
66 AG
37024980 CATGTTTGGG
Statistics
Matches: 181, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
124 67 0.37
126 111 0.61
127 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAAGCTTC
Found at i:37026214 original size:11 final size:12
Alignment explanation
Indices: 37026195--37026235 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
37026185 TAAAAATAGG
*
37026195 AATTTAAGAG-A
1 AATTGAAGAGAA
37026206 AATTGAAGAGAA
1 AATTGAAGAGAA
*
37026218 AATTG-AGAGCA
1 AATTGAAGAGAA
37026229 AATTGAA
1 AATTGAA
37026236 ATTAAATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 19 0.73
12 7 0.27
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (12 bp):
AATTGAAGAGAA
Found at i:37026243 original size:51 final size:51
Alignment explanation
Indices: 37026182--37026285 Score: 140
Period size: 51 Copynumber: 2.0 Consensus size: 51
37026172 TTTTTTAAAT
*
37026182 AATTAAAAATAGGAATTTAAGAGAAA-TT-GAAGAGAAAATTGAGAGCAAATTGA
1 AATTAAATAT-GG-ATTTAAGAGAAATTTGGAAG-G-AAATTGAGAGCAAATTGA
*
37026235 AATTAAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
1 AATTAAATATGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
37026286 GAAAATAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
51 29 0.62
52 5 0.11
53 13 0.28
ACGTcount: A:0.50, C:0.02, G:0.23, T:0.25
Consensus pattern (51 bp):
AATTAAATATGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
Found at i:37026579 original size:28 final size:28
Alignment explanation
Indices: 37026515--37026577 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
37026505 GTTTTCAGAG
37026515 AAAAGGGCCCATTCCGGTAAATAATAAA
1 AAAAGGGCCCATTCCGGTAAATAATAAA
** * *
37026543 ATATCGGGCCCATTTCGGTAAAT-TTAAA
1 A-AAAGGGCCCATTCCGGTAAATAATAAA
37026571 AAAAGGG
1 AAAAGGG
37026578 GCTTTTAATG
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
27 4 0.14
28 6 0.21
29 18 0.64
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (28 bp):
AAAAGGGCCCATTCCGGTAAATAATAAA
Found at i:37026752 original size:10 final size:10
Alignment explanation
Indices: 37026714--37026752 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
37026704 ATAGAAGTAC
*
37026714 ATTATATATTA
1 ATTAT-TATTT
*
37026725 ATTATTAATT
1 ATTATTATTT
37026735 ATTATTATTT
1 ATTATTATTT
37026745 ATTATTAT
1 ATTATTAT
37026753 ACTATTTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTATTATTT
Found at i:37027739 original size:19 final size:19
Alignment explanation
Indices: 37027715--37027751 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37027705 TAGTAGTACA
37027715 ATATATATTAATTATTATC
1 ATATATATTAATTATTATC
* *
37027734 ATATATTTTATTTATTAT
1 ATATATATTAATTATTAT
37027752 TATACTGGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
ATATATATTAATTATTATC
Found at i:37027837 original size:231 final size:229
Alignment explanation
Indices: 37027489--37028185 Score: 762
Period size: 231 Copynumber: 2.9 Consensus size: 229
37027479 TAATATAATC
* * *
37027489 ATTATTATCATATATTATTATTTATGATTATAATGCTTGAAATATGCTTTAAGTCCCTATTTCCC
1 ATTATTATCATATATTATTATTTATTATTATAATGGTTGAAATATGCTTTAAGTCCC---TT-CA
* * *
37027554 TACATTTGAAAGTTAACTCTTCTACTTTATTATATAATTCTATATTATATCATATAGTATATAAT
62 TACATTTGAAAGTTAAC-CTCCTACTATATTATATAA-TCCATA--ATATCATATAGTATATAAT
*
37027619 ATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTACATCTT
123 ATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTATATCTT
* *
37027684 TTATTACATTCTATAATATAATAGTAGTACA-ATATATATTA-
188 TTATTATA-TCTATAATATAATAATAGTACATATATATATTAT
* * * *
37027725 ATTATTATCATATATT-TTATTTATTATTATACTGGTTGAAATATGCTCTAAATCCCTTCATATA
1 ATTATTATCATATATTATTATTTATTATTATAATGGTTGAAATATGCTTTAAGTCCCTTCATACA
*
37027789 TTTGAAAGTTAGCCATCCTACTATATTATATAATACCATACAATATCATATAGTATATAATATAT
66 TTTGAAAGTTAACC-TCCTACTATATTATATAAT-CCAT--AATATCATATAGTATATAATATAT
* * * *
37027854 TAATAGTATATATATATGAAT-ATATTATTAAACATTATAATATAATGTAATACTATATCTTTTA
127 TAATAGTTTATATATATGCATCA-ATGATTAAACATTATAATATAATGTAATATTATATCTTTTA
37027918 TTATATCTATAATATAATAATAGTACATTATATATATTAGTT
191 TTATATCTATAATATAATAATAGTACA-TATATATATTA--T
* * *
37027960 ATTATAAAAAATATTATATATTATTGTTTATTATTATATTGGTTGAAATATGCTTTAAGTCCCTA
1 ATTAT------TATCATATATTATTATTTATTATTATAATGGTTGAAATATGCTTTAAGTCCCT-
* * * * *
37028025 TAATTTTTGTACATTTCAAAGTTAATCCTCCTATTATATTATATAATGC-T-ATATCATAT--CA
59 TCA------TACATTTGAAAGTTAA-CCTCCTACTATATTATATAATCCATAATATCATATAGTA
* * * *
37028086 TATAATATGTTAATAGTTTATAAATATGCATCAATGATTAAACATTATAATATCATGTAATGTTA
117 TATAATATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTA
*
37028151 TATTTTTTTATTATAATCTATAATATAATAATAGT
182 TA-TCTTTTATTAT-ATCTATAATATAATAATAGT
37028186 TATATAAATA
Statistics
Matches: 394, Mismatches: 39, Indels: 48
0.82 0.08 0.10
Matches are distributed among these distances:
230 24 0.06
231 119 0.30
232 12 0.03
233 1 0.00
235 40 0.10
236 16 0.04
241 10 0.03
242 95 0.24
243 13 0.03
244 29 0.07
247 1 0.00
248 1 0.00
249 31 0.08
250 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (229 bp):
ATTATTATCATATATTATTATTTATTATTATAATGGTTGAAATATGCTTTAAGTCCCTTCATACA
TTTGAAAGTTAACCTCCTACTATATTATATAATCCATAATATCATATAGTATATAATATATTAAT
AGTTTATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTATATCTTTTATTATA
TCTATAATATAATAATAGTACATATATATATTAT
Found at i:37027868 original size:17 final size:18
Alignment explanation
Indices: 37027838--37027875 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37027828 ACAATATCAT
*
37027838 ATAGTATATAATATATTA
1 ATAGTATATAATATATGA
37027856 ATAGTATAT-ATATATGA
1 ATAGTATATAATATATGA
37027873 ATA
1 ATA
37027876 TATTATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (18 bp):
ATAGTATATAATATATGA
Found at i:37028102 original size:242 final size:240
Alignment explanation
Indices: 37027498--37028368 Score: 822
Period size: 248 Copynumber: 3.6 Consensus size: 240
37027488 CATTATTATC
* * * * * *
37027498 ATATATTATTATTTATGATTATAATGCTTGAAATATGCTTTAAGTCCC-T-ATTTCCCTACATTT
1 ATATATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAGTCCCTTAATTTTCGTACATTT
* * * *
37027561 GAAAGTTAA-CTCTTCTACTTTATTATATAATTCTATATTATATCATATAGTATATAATATATTA
66 GAAAGTTAATC-CTCCTACTATATTATATAATGC---A-TATATCATATA-CATATAATATATTA
* *
37027625 ATAGTTTATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTACATCTTTTATTA
125 ATAGTATATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTATATCTTTTATTA
* * *
37027690 CATTCTATAATATAATAGTAGTACA-ATATATATTA--ATTAT-----TATC
190 TA-TCTATAATATAATAATAGTACATATATATATTAGTATTATAAAAATATT
* * *
37027734 ATATATT-TTATTTATTATTATACTGGTTGAAATATGCTCTAAATCCC------TTCATATATTT
1 ATATATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAGTCCCTTAATTTTCGTACATTT
* * *
37027792 GAAAGTT-AGCCATCCTACTATATTATATAATACCATACAATATCATATAGTATATAATATATTA
66 GAAAGTTAATCC-TCCTACTATATTATATAAT-GCAT---ATATCATATA-CATATAATATATTA
* * *
37027856 ATAGTATATATATATGAAT-ATATTATTAAACATTATAATATAATGTAATACTATATCTTTTATT
125 ATAGTATATATATATGCATCA-ATGATTAAACATTATAATATAATGTAATATTATATCTTTTATT
37027920 ATATCTATAATATAATAATAGTACATTATATATATTAGTTATTATAAAAAATATT
189 ATATCTATAATATAATAATAGTACA-TATATATATTAG-TATTAT-AAAAATATT
* * * *
37027975 ATATATTATTGTTTATTATTATATTGGTTGAAATATGCTTTAAGTCCCTATAATTTTTGTACATT
1 ATATATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAGTCCCT-TAATTTTCGTACATT
* * *
37028040 TCAAAGTTAATCCTCCTATTATATTATATAATGC-TATATCATAT-CATATAATATGTTAATAGT
65 TGAAAGTTAATCCTCCTACTATATTATATAATGCATATATCATATACATATAATATATTAATAGT
* * * * *
37028103 TTATAAATATGCATCAATGATTAAACATTATAATATCATGTAATGTTATATTTTTTTATTATAAT
130 ATATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTATA-TCTTTTATTAT-AT
* * * *
37028168 CTATAATATAATAATAGT-TATATAAATAGTAGTGCATTATATATTACATATTTTT
193 CTATAATATAATAATAGTACATATATATATTAGT--ATTATA-A--A-A-A-TATT
* * * * ** *
37028223 ACATATTTTTGTTTATTATTCTACTAATTGAAATATGCTCTAAGT-CCTTATACTTTTCGTAAAT
1 ATATATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAGTCCCTTA-A-TTTTCGTACAT
* * * *
37028287 TTGAAAGTTAGTCATCTTACTATATTATATAATG-ATATATCATAT-CATATAATTTATTAATAG
64 TTGAAAGTTAATCCTCCTACTATATTATATAATGCATATATCATATACATATAATATATTAATAG
*
37028350 TATATATACATGCATCAAT
129 TATATATATATGCATCAAT
37028369 TATTTTTCTT
Statistics
Matches: 531, Mismatches: 63, Indels: 70
0.80 0.09 0.11
Matches are distributed among these distances:
228 1 0.00
229 1 0.00
230 24 0.05
231 117 0.22
232 11 0.02
235 40 0.08
236 7 0.01
241 11 0.02
242 105 0.20
243 18 0.03
244 29 0.05
245 1 0.00
246 3 0.01
247 6 0.01
248 122 0.23
249 32 0.06
250 3 0.01
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (240 bp):
ATATATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAGTCCCTTAATTTTCGTACATTT
GAAAGTTAATCCTCCTACTATATTATATAATGCATATATCATATACATATAATATATTAATAGTA
TATATATATGCATCAATGATTAAACATTATAATATAATGTAATATTATATCTTTTATTATATCTA
TAATATAATAATAGTACATATATATATTAGTATTATAAAAATATT
Found at i:37031971 original size:37 final size:37
Alignment explanation
Indices: 37031930--37032003 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
37031920 GAAGAGCATG
37031930 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
1 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
*
37031967 TACATCTTTTGTATTTTTCCTCAAACTTTGATCACCA
1 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
37032004 AGACTAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.04, T:0.46
Consensus pattern (37 bp):
TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
Found at i:37038775 original size:29 final size:29
Alignment explanation
Indices: 37038705--37038886 Score: 149
Period size: 29 Copynumber: 6.3 Consensus size: 29
37038695 CGAATAGTTT
* *
37038705 CGACTATCGACTATGAAAAGGGATGGT-A
1 CGACCATCGAATATGAAAAGGGATGGTGA
*
37038733 --ACCATC-AACTATGAAAAAGGATGGTGA
1 CGACCATCGAA-TATGAAAAGGGATGGTGA
* **
37038760 CGACCATCGAATATGAAAAGGGATAGTTT
1 CGACCATCGAATATGAAAAGGGATGGTGA
* * * *
37038789 CGACTATTGATTAATGAAAAGGGATTGTGA
1 CGACCATCGAAT-ATGAAAAGGGATGGTGA
*
37038819 CAACCATC-AACTATGAAAAGGGATGGTGA
1 CGACCATCGAA-TATGAAAAGGGATGGTGA
* * * **
37038848 CGACAATGGATTAATGAAAAGGGATGGTTT
1 CGACCATCGAAT-ATGAAAAGGGATGGTGA
37038878 CGACCATCG
1 CGACCATCG
37038887 TTTAGCACAC
Statistics
Matches: 119, Mismatches: 26, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
25 1 0.01
26 20 0.17
27 1 0.01
29 52 0.44
30 45 0.38
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
CGACCATCGAATATGAAAAGGGATGGTGA
Found at i:37038825 original size:59 final size:59
Alignment explanation
Indices: 37038743--37038875 Score: 178
Period size: 59 Copynumber: 2.3 Consensus size: 59
37038733 ACCATCAACT
* * ** * *
37038743 ATGAAAAAGGATGGTGACGACCATCGAA-TATGAAAAGGGATAGTTTCGACTATTGATTA
1 ATGAAAAGGGATGGTGACAACCATC-AACTATGAAAAGGGATAGTGACGACAATGGATTA
* *
37038802 ATGAAAAGGGATTGTGACAACCATCAACTATGAAAAGGGATGGTGACGACAATGGATTA
1 ATGAAAAGGGATGGTGACAACCATCAACTATGAAAAGGGATAGTGACGACAATGGATTA
37038861 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
37038876 TTCGACCATC
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 2 0.03
59 62 0.97
ACGTcount: A:0.40, C:0.10, G:0.28, T:0.23
Consensus pattern (59 bp):
ATGAAAAGGGATGGTGACAACCATCAACTATGAAAAGGGATAGTGACGACAATGGATTA
Found at i:37038848 original size:88 final size:84
Alignment explanation
Indices: 37038674--37038886 Score: 264
Period size: 84 Copynumber: 2.5 Consensus size: 84
37038664 ATGACGTATC
* * * * *
37038674 GACGACCGTTGAATATGAAAACGAATAGTTTCGACTATCGACTATGAAAAGGGATGGTAACCATC
1 GACGACCATCGAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGCAACCATC
37038739 AACTATGAAAAAGGATGGT
66 AACTATGAAAAAGGATGGT
* *
37038758 GACGACCATCGAATATGAAAAGGGATAGTTTCGACTATTGATTAATGAAAAGGGATTGTGACAAC
1 GACGACCATCGAATATGAAAAGGGATAGTTTCGACTATCGACT-ATGAAAAGGGA-TG-G-CAAC
*
37038823 CATCAACTATGAAAAGGGATGGT
62 CATCAACTATGAAAAAGGATGGT
* * * * *
37038846 GACGACAATGGATTAATGAAAAGGGATGGTTTCGACCATCG
1 GACGACCATCGAAT-ATGAAAAGGGATAGTTTCGACTATCG
37038887 TTTAGCACAC
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
84 37 0.34
85 11 0.10
86 2 0.02
87 1 0.01
88 36 0.33
89 23 0.21
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (84 bp):
GACGACCATCGAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGCAACCATC
AACTATGAAAAAGGATGGT
Found at i:37038884 original size:59 final size:58
Alignment explanation
Indices: 37038705--37038885 Score: 172
Period size: 59 Copynumber: 3.1 Consensus size: 58
37038695 CGAATAGTTT
* * * * * *
37038705 CGACTATCGACTATGAAAAGGGATGGTA--ACCATCAACT-ATGAAAAAGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTACGACAATCGATTAATGAAAAGGGATGGTGA
* * * * *
37038760 CGACCATCGAA-TATGAAAAGGGATAGTTTCGACTATTGATTAATGAAAAGGGATTGTGA
1 CGACCATC-AACTATGAAAAGGGAT-GGTACGACAATCGATTAATGAAAAGGGATGGTGA
* * **
37038819 CAACCATCAACTATGAAAAGGGATGGTGACGACAATGGATTAATGAAAAGGGATGGTTT
1 CGACCATCAACTATGAAAAGGGATGGT-ACGACAATCGATTAATGAAAAGGGATGGTGA
37038878 CGACCATC
1 CGACCATC
37038886 GTTTAGCACA
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
55 20 0.20
56 3 0.03
58 10 0.10
59 67 0.67
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (58 bp):
CGACCATCAACTATGAAAAGGGATGGTACGACAATCGATTAATGAAAAGGGATGGTGA
Found at i:37047675 original size:39 final size:39
Alignment explanation
Indices: 37047626--37047703 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
37047616 TTAAACATGC
*
37047626 TTAAGACACAT-TTAAAAGATGTAATAA-ACTAGGACATAA
1 TTAACACACATATT-AAAGATGTAATAACAC-AGGACATAA
**
37047665 TTAACACACATATTAATTATGTAATAACACAGGACATAA
1 TTAACACACATATTAAAGATGTAATAACACAGGACATAA
37047704 AGACATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 30 0.88
40 4 0.12
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (39 bp):
TTAACACACATATTAAAGATGTAATAACACAGGACATAA
Found at i:37052103 original size:21 final size:21
Alignment explanation
Indices: 37052059--37052103 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
37052049 TATATCTACT
*
37052059 CAAGGCAATTATAATCCAAGA
1 CAAGGCAATTATAATCCAAAA
*
37052080 CAAGGGAATTATAAT-CAACAA
1 CAAGGCAATTATAATCCAA-AA
37052101 CAA
1 CAA
37052104 CAGAACTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (21 bp):
CAAGGCAATTATAATCCAAAA
Found at i:37060933 original size:6 final size:6
Alignment explanation
Indices: 37060924--37060993 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
37060914 AACAGCATGT
** * * **
37060924 GAAAAA GAAAAA GAAAAA GAAAAA GAAATT GCAAAA TAAAAA GAAATC
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
** *
37060972 GAAAAA GTGAGA GAAAAA GAAA
1 GAAAAA GAAAAA GAAAAA GAAA
37060994 TCGAAGAAAA
Statistics
Matches: 46, Mismatches: 18, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.07
Consensus pattern (6 bp):
GAAAAA
Found at i:37063390 original size:15 final size:15
Alignment explanation
Indices: 37063378--37063417 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
37063368 AATTTAATAG
37063378 CTATGTTTTTAATTAA
1 CTATGTTTTTAATT-A
* *
37063394 TTATTTTTTTAATTA
1 CTATGTTTTTAATTA
37063409 CTATGTTTT
1 CTATGTTTT
37063418 GTTGCTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
CTATGTTTTTAATTA
Found at i:37065043 original size:27 final size:27
Alignment explanation
Indices: 37065012--37065189 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37065002 TAAATTGTAC
37065012 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37065039 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37065065 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37065093 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37065121 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37065148 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37065175 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37065190 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37065126 original size:82 final size:81
Alignment explanation
Indices: 37065013--37065168 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37065003 AAATTGTACA
* *
37065013 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37065077 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37065094 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37065159 TGCGAGTTGA
65 TGCGAATTGA
37065169 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37065180 original size:82 final size:81
Alignment explanation
Indices: 37065009--37065189 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37064999 GATTAAATTG
* *
37065009 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37065074 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37065090 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37065154 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37065172 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37065190 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37072246 original size:27 final size:27
Alignment explanation
Indices: 37072215--37072392 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37072205 TAAATTGTAC
37072215 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37072242 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37072268 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37072296 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37072324 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37072351 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37072378 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37072393 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37072329 original size:82 final size:81
Alignment explanation
Indices: 37072216--37072371 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37072206 AAATTGTACA
* *
37072216 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37072280 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37072297 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37072362 TGCGAGTTGA
65 TGCGAATTGA
37072372 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37072383 original size:82 final size:81
Alignment explanation
Indices: 37072212--37072392 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37072202 GATTAAATTG
* *
37072212 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37072277 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37072293 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37072357 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37072375 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37072393 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37079481 original size:28 final size:28
Alignment explanation
Indices: 37079441--37079495 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
37079431 GTAACAGTAT
* *
37079441 AGTGTGGGCCTTAGCCCAATACTGTAAC
1 AGTGTAGGCCTTAGCCCAATACAGTAAC
*
37079469 AGTGTAGGCCTTAGCCGAATACAGTAA
1 AGTGTAGGCCTTAGCCCAATACAGTAA
37079496 TAGTACAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (28 bp):
AGTGTAGGCCTTAGCCCAATACAGTAAC
Found at i:37079914 original size:83 final size:81
Alignment explanation
Indices: 37079794--37079963 Score: 252
Period size: 83 Copynumber: 2.1 Consensus size: 81
37079784 GGTATAATAG
* *
37079794 TCATTTTACCTTATGGGGGTATTTCGATTATTTTACCCTATGGGGGTATCTCGGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGATTATTTTACCCTATAGGGGTATCTCGGTCATTTTACCC
37079859 TAT-GGGAGTATTTCGA
66 TATAGGGA-TATTTCGA
* * *
37079875 TCATTTTACCCTATGGTAGGGTATTTCGATTATTTTACCCTGTAGGGGTATTTTGGTCATTTTAC
1 TCATTTTACCCTATGG--GGGTATTTCGATTATTTTACCCTATAGGGGTATCTCGGTCATTTTAC
*
37079940 CCTATAGGGATATTTCGG
64 CCTATAGGGATATTTCGA
37079958 TCATTT
1 TCATTT
37079964 ATTGACCTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.19
83 61 0.76
84 4 0.05
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTCGATTATTTTACCCTATAGGGGTATCTCGGTCATTTTACCC
TATAGGGATATTTCGA
Found at i:37079947 original size:27 final size:27
Alignment explanation
Indices: 37079793--37079963 Score: 207
Period size: 27 Copynumber: 6.3 Consensus size: 27
37079783 GGGTATAATA
*
37079793 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
37079820 ATTATTTTACCCTATGGGGGTATCTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37079847 GTCATTTTACCCTATGGGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37079874 ATCATTTTACCCTATGGTAGGGTATTTCG
1 GTCATTTTACCCTATGG--GGGTATTTCG
* * * * *
37079903 ATTATTTTACCCTGTAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
37079930 GTCATTTTACCCTATAGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
37079957 GTCATTT
1 GTCATTT
37079964 ATTGACCTTT
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 100 0.81
29 23 0.19
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:37087461 original size:42 final size:40
Alignment explanation
Indices: 37087414--37087493 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 40
37087404 GGGTAAATCC
* *
37087414 AACAACCCATGTTTATCTTCTTCTCTTTTTAAAATTTTTTTA
1 AACAACCCAAGATTATCTTC-TC-CTTTTTAAAATTTTTTTA
* *
37087456 AACAACCTAAGATTATCTTCTCCTTTTTAATATTTTTT
1 AACAACCCAAGATTATCTTCTCCTTTTTAAAATTTTTT
37087494 CTTGGACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 15 0.44
41 2 0.06
42 17 0.50
ACGTcount: A:0.28, C:0.19, G:0.03, T:0.51
Consensus pattern (40 bp):
AACAACCCAAGATTATCTTCTCCTTTTTAAAATTTTTTTA
Found at i:37087812 original size:21 final size:21
Alignment explanation
Indices: 37087787--37087830 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37087777 GCAGTGATAA
*
37087787 AAAATACTAGTAAAATGT-CCT
1 AAAATACTACT-AAATGTACCT
*
37087808 AAAATGCTACTAAATGTACCT
1 AAAATACTACTAAATGTACCT
37087829 AA
1 AA
37087831 GTACAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATACTACTAAATGTACCT
Found at i:37094831 original size:52 final size:52
Alignment explanation
Indices: 37094774--37094990 Score: 251
Period size: 52 Copynumber: 4.2 Consensus size: 52
37094764 ATAAAAAATA
* * * *
37094774 TTATGAATGCAACTAAACAAACAATGAAACATAATTAAAAACACCACTTAAT
1 TTATGAATGCAACAAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
** * * * *
37094826 TTATGAATATAACTAAACAATA-ATTTAAGCA-AAACTAAAAACACGACTTTAA-
1 TTATGAATGCAACAAAACAA-ACAATGAAGCATAAA-TAAAAACACAAC-TTAAT
* *
37094878 TTATGAATGCAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
1 TTATGAATGCAACAAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
* * *
37094930 TTATGAATGCAACAAAACAAGCAAAGAAGCATAAATAAAAACACAACTTTAT
1 TTATGAATGCAACAAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
37094982 TTATGAATG
1 TTATGAATG
37094991 AAAATATGCT
Statistics
Matches: 142, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
51 5 0.04
52 129 0.91
53 8 0.06
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (52 bp):
TTATGAATGCAACAAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
Found at i:37094896 original size:104 final size:104
Alignment explanation
Indices: 37094773--37094990 Score: 278
Period size: 104 Copynumber: 2.1 Consensus size: 104
37094763 AATAAAAAAT
* * * *
37094773 ATTATGAATGCAACTAAACAAACAATGAAACATAATTAAAAACACCACTTAATTTATGAATATAA
1 ATTATGAATGCAACAAAACAAACAATGAAACATAAATAAAAACACAACTTAATTTATGAATACAA
* * ** *
37094838 CTAAACAA-TAATTTAAGCA-AAACTAAAAACACGACTTTA
66 CAAAACAAGCAA-AGAAGCATAAA-TAAAAACACAACTTTA
* * * *
37094877 ATTATGAATGCAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTATTTATGAATGCAA
1 ATTATGAATGCAACAAAACAAACAATGAAACATAAATAAAAACACAACTTAATTTATGAATACAA
37094942 CAAAACAAGCAAAGAAGCATAAATAAAAACACAACTTTA
66 CAAAACAAGCAAAGAAGCATAAATAAAAACACAACTTTA
*
37094981 TTTATGAATG
1 ATTATGAATG
37094991 AAAATATGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
104 93 0.95
105 5 0.05
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.24
Consensus pattern (104 bp):
ATTATGAATGCAACAAAACAAACAATGAAACATAAATAAAAACACAACTTAATTTATGAATACAA
CAAAACAAGCAAAGAAGCATAAATAAAAACACAACTTTA
Found at i:37095386 original size:38 final size:38
Alignment explanation
Indices: 37095335--37095409 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
37095325 TTAACCCACC
37095335 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
1 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
37095373 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAA
1 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAA
37095410 CTCTTATGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (38 bp):
CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
Found at i:37095551 original size:33 final size:32
Alignment explanation
Indices: 37095506--37095567 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
37095496 TCGATTCTTC
37095506 TTTTTCTCGCTCATTCTCTC-TTTCTTTTTCT
1 TTTTTCTCGCTCATTCTCTCTTTTCTTTTTCT
*
37095537 TTTTTCTCATGCTCATTTTCTCTTTTCTTTT
1 TTTTTCTC--GCTCATTCTCTCTTTTCTTTT
37095568 ATTTCTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 8 0.30
33 11 0.41
34 8 0.30
ACGTcount: A:0.05, C:0.26, G:0.03, T:0.66
Consensus pattern (32 bp):
TTTTTCTCGCTCATTCTCTCTTTTCTTTTTCT
Found at i:37095572 original size:16 final size:17
Alignment explanation
Indices: 37095553--37095584 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37095543 TCATGCTCAT
37095553 TTTCTC-TTTTCTTTTA
1 TTTCTCTTTTTCTTTTA
37095569 TTTCTCTTTTTCTTTT
1 TTTCTCTTTTTCTTTT
37095585 TTCTTTGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTCTTTTTCTTTTA
Found at i:37095586 original size:24 final size:23
Alignment explanation
Indices: 37095531--37095608 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 23
37095521 CTCTCTTTCT
*
37095531 TTTTCTTTTTTC--TCATGCTCA
1 TTTTCTTTTTTCTTTCATTCTCA
* * *
37095552 TTTTCTCTTTTCTTTTATTTCTCT
1 TTTTCTTTTTTCTTTCA-TTCTCA
*
37095576 TTTTCTTTTTTCTTTGCCTTCTCA
1 TTTTCTTTTTTCTTT-CATTCTCA
37095600 TTTTCTTTT
1 TTTTCTTTT
37095609 GTCTCTTGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
21 11 0.24
23 2 0.04
24 32 0.71
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTTCTTTTTTCTTTCATTCTCA
Found at i:37095603 original size:17 final size:20
Alignment explanation
Indices: 37095583--37095626 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
37095573 TCTTTTTCTT
37095583 TTTTCTTTG-C-CTT-CTCA
1 TTTTCTTTGTCTCTTGCTCA
37095600 TTTTCTTTTGTCTCTTGCTCA
1 TTTTC-TTTGTCTCTTGCTCA
37095621 TTTTCT
1 TTTTCT
37095627 GTTGATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 1 0.04
20 4 0.17
21 9 0.39
ACGTcount: A:0.05, C:0.25, G:0.07, T:0.64
Consensus pattern (20 bp):
TTTTCTTTGTCTCTTGCTCA
Found at i:37106463 original size:78 final size:78
Alignment explanation
Indices: 37106328--37106496 Score: 257
Period size: 78 Copynumber: 2.2 Consensus size: 78
37106318 GTCCTTGAAG
* * * *
37106328 AAATTAATTGATCAGTTTTGACATTTGGAGTTCCCGAACAACCATTGGAGTGGACTTAAAATTTA
1 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGAACTTAAAAGTTA
37106393 AGCTGAATGAATA
66 AGCTGAATGAATA
** *
37106406 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGAACTTAGGAGTTG
1 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGAACTTAAAAGTTA
*
37106471 AGCTGAATGAATC
66 AGCTGAATGAATA
*
37106484 AAATTATTTGATC
1 AAATTAATTGATC
37106497 GGTCAATGGT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (78 bp):
AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGAACTTAAAAGTTA
AGCTGAATGAATA
Found at i:37112495 original size:27 final size:27
Alignment explanation
Indices: 37112462--37113094 Score: 522
Period size: 27 Copynumber: 23.5 Consensus size: 27
37112452 CCCTAAAATA
* *
37112462 GGTAAAATGACTAAAATACCCCTAAAG
1 GGTAAAATGACTGAAATACCCCTATAG
* ** * * *
37112489 GGTAAAATAACT-ATTTTAGCCCTAAAA
1 GGTAAAATGACTGA-AATACCCCTATAG
* * **
37112516 GATGAAAACGACAAAAATACCTCC-ATAG
1 GGT-AAAATGACTGAAATACC-CCTATAG
*
37112544 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
37112571 GGTAACATGACTGAAATAATCCC-ATAG
1 GGTAAAATGACTGAAAT-ACCCCTATAG
* *
37112598 GGTAAAATGA-TCAAAATACCCCCATAG
1 GGTAAAATGACT-GAAATACCCCTATAG
* *
37112625 GGTAAAATGGCTGAAATA-CCCTCATAA
1 GGTAAAATGACTGAAATACCCCT-ATAG
*
37112652 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* * *
37112679 GGTAAAATGGCTAAAATA-CCCTCATAA
1 GGTAAAATGACTGAAATACCCCT-ATAG
* ** *
37112706 GGTAAAATGGCCAAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
*
37112733 GGTAAAATGATTGAAATACACCC-ATAG
1 GGTAAAATGACTGAAATAC-CCCTATAG
**
37112760 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
** * *
37112787 CATAAAATGACTGAAATACCCCCATAA
1 GGTAAAATGACTGAAATACCCCTATAG
* * *
37112814 GGTAAGATGACCGAAATAACCCC-ATAA
1 GGTAAAATGACTGAAAT-ACCCCTATAG
* * **
37112841 AGTAAGATGACCAAAATACCCC-ATAG
1 GGTAAAATGACTGAAATACCCCTATAG
37112867 GGTAAAATGA-TCGAAATA-CCCTCATAG
1 GGTAAAATGACT-GAAATACCCCT-ATAG
* *
37112894 AGTAAAATGATTGAAATAACCCC-ATAG
1 GGTAAAATGACTGAAAT-ACCCCTATAG
* *
37112921 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
** *
37112948 GGTAAAATGACCAAAATA-CCCTATAA
1 GGTAAAATGACTGAAATACCCCTATAG
* *
37112974 AGTAAAATGACCGAAATA-CCCTCATAG
1 GGTAAAATGACTGAAATACCCCT-ATAG
** *
37113001 GGTAAAATGACCAAAATACCTCTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
37113028 GGTAAAATGACCGAAATAACCCTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
37113055 GATAAAATGA-TCGAAATACCCCCATAG
1 GGTAAAATGACT-GAAATACCCCTATAG
37113082 GGTAAAATGACTG
1 GGTAAAATGACTG
37113095 TTATAACCCT
Statistics
Matches: 497, Mismatches: 82, Indels: 54
0.79 0.13 0.09
Matches are distributed among these distances:
25 3 0.01
26 69 0.14
27 381 0.77
28 38 0.08
29 6 0.01
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCTATAG
Found at i:37112596 original size:54 final size:53
Alignment explanation
Indices: 37112530--37113092 Score: 651
Period size: 54 Copynumber: 10.5 Consensus size: 53
37112520 AAAACGACAA
* *
37112530 AAATACCTCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAACATGACTG
1 AAATACC-CCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
37112584 AAATAATCCCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATGGCTG
1 AAAT-ACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
37112638 AAATACCCTCATAAGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGGCTA
1 AAATACCC-CATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
37112692 AAATACCCTCATAAGGTAAAATGGCCAAAATACCCCCATAGGGTAAAATGATTG
1 AAATACCC-CATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * **
37112746 AAATACACCCATAGGGTAAAATGACCAAAATACCCCTATAGCATAAAATGACTG
1 AAATAC-CCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * ** * **
37112800 AAATACCCCCATAAGGTAAGATGACCGAAATAACCCCATAAAGTAAGATGACCA
1 AAATA-CCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
37112854 AAATACCCCATAGGGTAAAATGATCGAAATACCCTCATAGAGTAAAATGATTG
1 AAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
**
37112907 AAATAACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
1 AAAT-ACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* ** * **
37112961 AAATACCCTATAAAGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCA
1 AAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
37113014 AAATACCTCTATAGGGTAAAATGACCGAAATAACCCTATAGGATAAAATGA-TCG
1 AAATACC-CCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACT-G
37113068 AAATACCCCCATAGGGTAAAATGAC
1 AAATA-CCCCATAGGGTAAAATGAC
37113093 TGTTATAACC
Statistics
Matches: 437, Mismatches: 64, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
53 97 0.22
54 333 0.76
55 7 0.02
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (53 bp):
AAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
Found at i:37112639 original size:81 final size:81
Alignment explanation
Indices: 37112520--37113092 Score: 672
Period size: 81 Copynumber: 7.1 Consensus size: 81
37112510 CTAAAAGATG
* * * *
37112520 AAAACGACAAAAATACCTCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAACATGACTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
*
37112585 AATAATCCCATAGGGT
66 AATAACCCCATAGGGT
* * * *
37112601 AAAATGATCAAAATACCCCCATAGGGTAAAATGGCTGAAATACCCTCATAAGGTAAAATGACTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
*
37112666 AATACCCCCATAGGGT
66 AATAACCCCATAGGGT
* * * * * ** *
37112682 AAAATGGCTAAAATACCCTCATAAGGTAAAATGGCCAAAATACCCCCATAGGGTAAAATGATTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
37112747 AAT-ACACCCATAGGGT
66 AATAAC-CCCATAGGGT
* ** * * *
37112763 AAAATGACCAAAATACCCCTATAGCATAAAATGACTGAAATACCCCCATAAGGTAAGATGACCGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
**
37112828 AATAACCCCATAAAGT
66 AATAACCCCATAGGGT
* * * *
37112844 AAGATGACCAAAATA-CCCCATAGGGTAAAATGA-TCGAAATACCCTCATAGAGTAAAATGATTG
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATGACTG
37112907 AAATAACCCCATAGGGT
65 AAATAACCCCATAGGGT
* ** * ** *
37112924 AAAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATA-CCCTATAAAGTAAAATGACCGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
37112988 AAT-ACCCTCATAGGGT
66 AATAACCC-CATAGGGT
* * * * * *
37113004 AAAATGACCAAAATACCTCTATAGGGTAAAATGACCGAAATAACCCTATAGGATAAAATGA-TCG
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACT-G
*
37113068 AAATACCCCCATAGGGT
65 AAATAACCCCATAGGGT
37113085 AAAATGAC
1 AAAATGAC
37113093 TGTTATAACC
Statistics
Matches: 416, Mismatches: 67, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
79 5 0.01
80 132 0.32
81 274 0.66
82 5 0.01
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (81 bp):
AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
AATAACCCCATAGGGT
Found at i:37113369 original size:26 final size:26
Alignment explanation
Indices: 37113340--37113398 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
37113330 TGTTACTAGC
*
37113340 AGCTTTGCTACGATACTAATATTGGA
1 AGCTTTGCTACGATACTAATACTGGA
* * * *
37113366 AGCTCTGCTACGATGCTATTACTGGT
1 AGCTTTGCTACGATACTAATACTGGA
37113392 AGCTTTG
1 AGCTTTG
37113399 TTGCAATATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.36
Consensus pattern (26 bp):
AGCTTTGCTACGATACTAATACTGGA
Found at i:37113556 original size:28 final size:28
Alignment explanation
Indices: 37113508--37113681 Score: 287
Period size: 28 Copynumber: 6.2 Consensus size: 28
37113498 TATTGCACTG
*
37113508 CACTGTTACTGTATTGGGCTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
*
37113536 CATTGATT-CTGTATTGGGCTAAGGCCCA
1 CACTG-TTACTGTATTGGGCTAAGGCCCA
* *
37113564 CACTGTTACTGTATTAGGCTGAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
37113592 CACTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
37113620 CACTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
*
37113648 CACTGTTACTGTATTGGGCTAAAGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
37113676 CACTGT
1 CACTGT
37113682 ACTATCACTG
Statistics
Matches: 136, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 2 0.01
28 132 0.97
29 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:37119355 original size:41 final size:40
Alignment explanation
Indices: 37119310--37119411 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 40
37119300 TGATTCAGTA
37119310 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * * *
37119351 CACCGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
37119392 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
37119412 AGCTCTAAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.04
41 50 0.93
42 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:37126243 original size:100 final size:100
Alignment explanation
Indices: 37125970--37126941 Score: 1404
Period size: 100 Copynumber: 9.8 Consensus size: 100
37125960 TTTAATAAGC
* * * * * * *
37125970 TTAACTGTAATGTCGAGGAAGCAAGATTCACCGTTGTTG-TTTCAATCTGTTCCACTGCACCGTC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT-AATATGTTCCACTGCATCGCC
* *
37126034 TGGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTTT
65 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37126070 TTAACTGCAATGTC-GGG-AGCAAGATTCACTGATGTGGCTTTAATATGTTCCACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* * *
37126133 AGGGAGTAAGATTCACTGTTGTAGCTTTAATTTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37126168 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCTAGC-GCATCGCC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCA-CTGCATCGCC
* *
37126232 TGGGGAATAAGATTCACTGTTGTAGCTTTAATCTTT
65 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37126268 TTAATTGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37126332 AGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * * *
37126367 TTAACTGCAATGCCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTGCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37126432 GGGGAGTAAGATTCGTTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37126467 TTAACTGCAATGTCGGGG-AGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37126531 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * *
37126566 TTAATTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATATGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37126631 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37126666 TTAACTGTAATTTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCA-CTGCC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATC-GCC
*
37126729 TGGGGAGTAATATTCGCTGTTGTAGCTTTAATCTTT
65 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
** * *
37126765 TTAACTGCAATGTCGGGGAAGCAAGATTCTTCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37126830 GGGGAGTAAGATTCACTGTTGTAGCTTTAATC-TT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
** * * * * * *
37126864 TTATTTGCAATGTCGAGGAAGGATGATTCACCAATGTGGCTTTAATATGTTCCACTGTATCGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37126929 GGGAAGTGAGATT
66 GGGGAGTAAGATT
37126942 TGCCGTCTTC
Statistics
Matches: 788, Mismatches: 74, Indels: 21
0.89 0.08 0.02
Matches are distributed among these distances:
98 82 0.10
99 347 0.44
100 357 0.45
101 2 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (100 bp):
TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
Found at i:37126370 original size:199 final size:199
Alignment explanation
Indices: 37125970--37126941 Score: 1479
Period size: 199 Copynumber: 4.9 Consensus size: 199
37125960 TTTAATAAGC
* * * * * * *
37125970 TTAACTGTAATGTCGAGGAAGCAAGATTCACCGTTGTTG-TTTCAATCTGTTCCACTGCACCGTC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT-AATCTGTTCCACCGCATCGCC
* *
37126034 T-GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAGCAAGATTC
65 TGGGGAA-TAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTC
* *
37126097 ACTGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGGAGTAAGATTCACTGTTGTAGCTTTA
129 ACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTA
*
37126162 ATTTTT
194 ATCTTT
* *
37126168 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCTAGCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
*
37126233 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAGCAAGATTCAC
66 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCAC
*
37126298 CGATGTGGCTTTAATCTGTTCCACTGCATCGCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
37126363 CTTT
196 CTTT
* * *
37126367 TTAACTGCAATGCCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTGCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
* **
37126432 GGGGAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCAC
66 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCAC
* *
37126497 CAATGTGGCTTTAATATGTTCCACTGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
37126562 CTTT
196 CTTT
* * *
37126566 TTAATTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATATGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
* *
37126631 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGTAATTTCGGGGAGCAAGATTCAC
66 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCAC
* *
37126696 CGATGTGGCTTTAATATGTTCCACTGCA-CTGCCTGGGGAGTAATATTCGCTGTTGTAGCTTTAA
131 CGATGTGGCTTTAATATGTTCCACTGCATC-GCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTAA
37126760 TCTTT
195 TCTTT
**
37126765 TTAACTGCAATGTCGGGGAAGCAAGATTCTTCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
* ** * * *
37126830 GGGGAGTAAGATTCACTGTTGTAGCTTTAATC-TTTTATTTGCAATGTCGAGGAAGGATGATTCA
66 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG-GGGAGCAAGATTCA
* * *
37126894 CCAATGTGGCTTTAATATGTTCCACTGTATCGCC-AGGGAAGTGAGATT
130 CCGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGG-AGTAAGATT
37126942 TGCCGTCTTC
Statistics
Matches: 708, Mismatches: 59, Indels: 13
0.91 0.08 0.02
Matches are distributed among these distances:
198 109 0.15
199 598 0.84
200 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (199 bp):
TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCAC
CGATGTGGCTTTAATATGTTCCACTGCATCGCCTAGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
CTTT
Found at i:37128541 original size:7 final size:7
Alignment explanation
Indices: 37128527--37128564 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
37128517 AGCCTCTCCA
37128527 TCATTTT
1 TCATTTT
*
37128534 TTATTTT
1 TCATTTT
37128541 TCATTTT
1 TCATTTT
37128548 CTC-TTTT
1 -TCATTTT
37128555 TCATTTT
1 TCATTTT
37128562 TCA
1 TCA
37128565 CATTTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.07
7 23 0.85
8 2 0.07
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TCATTTT
Found at i:37129507 original size:34 final size:34
Alignment explanation
Indices: 37129469--37129539 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
37129459 TTCAATTTCA
*
37129469 TTTTGACATTGATTTTGA-TTTTTCTTTTT-CTTCT
1 TTTTG-CATTGATTTTAATTTTTTCTTTTTGCTT-T
**
37129503 TTTTGTTTTGATTTTAATTTTTTCTTTTTGCTTT
1 TTTTGCATTGATTTTAATTTTTTCTTTTTGCTTT
37129537 TTT
1 TTT
37129540 CAAATTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 9 0.28
34 20 0.62
35 3 0.09
ACGTcount: A:0.10, C:0.08, G:0.08, T:0.73
Consensus pattern (34 bp):
TTTTGCATTGATTTTAATTTTTTCTTTTTGCTTT
Found at i:37138639 original size:14 final size:14
Alignment explanation
Indices: 37138620--37138647 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37138610 CCAATTTATT
37138620 AATGAATTATTAAA
1 AATGAATTATTAAA
37138634 AATGAATTATTAAA
1 AATGAATTATTAAA
37138648 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:37141597 original size:21 final size:21
Alignment explanation
Indices: 37141573--37141613 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37141563 ATAATGCCTT
*
37141573 GATCCAAAGTCAAGCAGCAAC
1 GATCCAAAGCCAAGCAGCAAC
37141594 GATCCAAAGCCAAGCAGCAA
1 GATCCAAAGCCAAGCAGCAA
37141614 TACTGAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.29, G:0.20, T:0.07
Consensus pattern (21 bp):
GATCCAAAGCCAAGCAGCAAC
Found at i:37148192 original size:76 final size:77
Alignment explanation
Indices: 37148029--37148217 Score: 218
Period size: 76 Copynumber: 2.5 Consensus size: 77
37148019 AAAGTATATA
* * * *
37148029 AATTGAATTAAAGGTATGAATTTTATATATGTATATGTGAGGTTCGAATGTATATGTATATACAT
1 AATTGAATTAAAGGTATGAATTTTAAATATTTATATGTGAGATTCGAA-GTAGATGTATATACAT
* * *
37148094 GTATAAGTTCTTG
65 ATACAAGTACTTG
* * * ** *
37148107 AATTAAATTAAAGGTATGACTTTTAAATATTTATGTGTTTGATTCGAA-TAGATGTATATACGTA
1 AATTGAATTAAAGGTATGAATTTTAAATATTTATATGTGAGATTCGAAGTAGATGTATATACATA
37148171 TACAAGTACTTG
66 TACAAGTACTTG
* * *
37148183 AGTTGAATTAAAAGTATGAATTGTAAATATTTATA
1 AATTGAATTAAAGGTATGAATTTTAAATATTTATA
37148218 AGATTCGAAC
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
76 52 0.57
78 40 0.43
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (77 bp):
AATTGAATTAAAGGTATGAATTTTAAATATTTATATGTGAGATTCGAAGTAGATGTATATACATA
TACAAGTACTTG
Found at i:37148608 original size:31 final size:31
Alignment explanation
Indices: 37148573--37148795 Score: 120
Period size: 31 Copynumber: 6.9 Consensus size: 31
37148563 ATGTATTTGG
*
37148573 TTATATACCTTTGAA-GTGTATATGCTTTCGA
1 TTATATA-CTTTGAAGGTGTATATGCATTCGA
* *
37148604 TTATAAGTA-TTTGATAGGTATATATATGCATTCGG
1 TTAT-A-TACTTTGA-AGG--TGTATATGCATTCGA
* *
37148639 TTATATACCTTT-AATGTGTATGTGCATTCGA
1 TTATATA-CTTTGAAGGTGTATATGCATTCGA
* *
37148670 TTATAAGTA-TTTGATAGGTATATATGCATTCGG
1 TTAT-A-TACTTTGA-AGGTGTATATGCATTCGA
* * *
37148703 TTGTATACATTTG-ATGTGTATATGCGTTCGA
1 TTATATAC-TTTGAAGGTGTATATGCATTCGA
*
37148734 TTATAAGTA-TTTGATAGGTATATATGCATTC-A
1 TTAT-A-TACTTTGA-AGGTGTATATGCATTCGA
* * *
37148766 GTTGTATACATTT-CATGTGTATATGCATTC
1 -TTATATAC-TTTGAAGGTGTATATGCATTC
37148796 AGTTATAAGT
Statistics
Matches: 147, Mismatches: 24, Indels: 42
0.69 0.11 0.20
Matches are distributed among these distances:
31 67 0.46
32 8 0.05
33 51 0.35
34 2 0.01
35 19 0.13
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.44
Consensus pattern (31 bp):
TTATATACTTTGAAGGTGTATATGCATTCGA
Found at i:37148698 original size:33 final size:33
Alignment explanation
Indices: 37148591--37148854 Score: 203
Period size: 33 Copynumber: 8.1 Consensus size: 33
37148581 CTTTGAAGTG
*
37148591 TATATGCTTTCGATTATAAGTATTTGATAGGTATA
1 TATATGCATTCGATTATAAGTATTTGATAGG--TA
* * *
37148626 TATATGCATTCGGTTAT-A-TACCTTT-A-ATGTG
1 TATATGCATTCGATTATAAGTA--TTTGATAGGTA
*
37148657 TATGTGCATTCGATTATAAGTATTTGATAGGTA
1 TATATGCATTCGATTATAAGTATTTGATAGGTA
* * * *
37148690 TATATGCATTCGGTTGTATA-CATTTGAT--GTG
1 TATATGCATTCGATTATA-AGTATTTGATAGGTA
*
37148721 TATATGCGTTCGATTATAAGTATTTGATAGGTA
1 TATATGCATTCGATTATAAGTATTTGATAGGTA
* * * *
37148754 TATATGCATTC-AGTTGTATA-CATTTCAT--GTG
1 TATATGCATTCGA-TTATA-AGTATTTGATAGGTA
* *
37148785 TATATGCATTC-AGTTATAAGTAGTTGATAAGTA
1 TATATGCATTCGA-TTATAAGTATTTGATAGGTA
*
37148818 TATATGCATTCGGTTATAAGTATTTGAT-GAGTA
1 TATATGCATTCGATTATAAGTATTTGATAG-GTA
37148851 TATA
1 TATA
37148855 CATACATTTG
Statistics
Matches: 181, Mismatches: 31, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
30 2 0.01
31 67 0.37
32 3 0.02
33 87 0.48
34 4 0.02
35 18 0.10
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.44
Consensus pattern (33 bp):
TATATGCATTCGATTATAAGTATTTGATAGGTA
Found at i:37148796 original size:31 final size:31
Alignment explanation
Indices: 37148626--37148799 Score: 122
Period size: 31 Copynumber: 5.5 Consensus size: 31
37148616 GATAGGTATA
* * * *
37148626 TATATGCATTCGGTTATATACCTTTAATGTG
1 TATATGCATTCAGTTGTATACATTTGATGTG
* * * *
37148657 TATGTGCATTC-GAT-TATAAGTATTTGATAGGTA
1 TATATGCATTCAGTTGTAT-A-CATTTGAT--GTG
*
37148690 TATATGCATTCGGTTGTATACATTTGATGTG
1 TATATGCATTCAGTTGTATACATTTGATGTG
* * * *
37148721 TATATGCGTTC-GAT-TATAAGTATTTGATAGGTA
1 TATATGCATTCAGTTGTAT-A-CATTTGAT--GTG
*
37148754 TATATGCATTCAGTTGTATACATTTCATGTG
1 TATATGCATTCAGTTGTATACATTTGATGTG
37148785 TATATGCATTCAGTT
1 TATATGCATTCAGTT
37148800 ATAAGTAGTT
Statistics
Matches: 112, Mismatches: 19, Indels: 24
0.72 0.12 0.15
Matches are distributed among these distances:
29 6 0.05
30 6 0.05
31 51 0.46
33 37 0.33
34 6 0.05
35 6 0.05
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (31 bp):
TATATGCATTCAGTTGTATACATTTGATGTG
Found at i:37148852 original size:64 final size:64
Alignment explanation
Indices: 37148545--37148853 Score: 388
Period size: 64 Copynumber: 4.8 Consensus size: 64
37148535 ATTTATATCT
* * * * * *
37148545 TATTTGATATGTATTTATATGTATTTGGTTATATACCTTTGAAGTGTATATGCTTTCGATTATAA
1 TATTTGATAGGTA--TATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
37148610 G
64 G
* * *
37148611 TATTTGATAGGTATATATATGCATTCGGTTATATACCTTTAATGTGTATGTGCATTCGATTATAA
1 TATTTGATAGG--TATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
37148676 G
64 G
* *
37148677 TATTTGATAGGTATATATGCATTCGGTTGTATACATTTGATGTGTATATGCGTTCGATTATAAG
1 TATTTGATAGGTATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAAG
* * *
37148741 TATTTGATAGGTATATATGCATTCAGTTGTATACATTTCATGTGTATATGCATTC-AGTTATAAG
1 TATTTGATAGGTATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGA-TTATAAG
* * * *
37148805 TAGTTGATAAGTATATATGCATTCGGTTATA-AGTATTTGATGAGTATAT
1 TATTTGATAGGTATATATGCATTCGGTTATATA-CATTTGATGTGTATAT
37148854 ACATACATTT
Statistics
Matches: 217, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
63 2 0.01
64 147 0.68
66 66 0.30
68 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45
Consensus pattern (64 bp):
TATTTGATAGGTATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAAG
Found at i:37150467 original size:24 final size:25
Alignment explanation
Indices: 37150426--37150473 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
37150416 TTCCATCTAT
* **
37150426 ATTCTTTATTTTTTTTCTT-TATTA
1 ATTCTATATTTTCATTCTTCTATTA
37150450 ATTCTATATTTTCATTCTTCTATT
1 ATTCTATATTTTCATTCTTCTATT
37150474 TTATTAATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTCTATATTTTCATTCTTCTATTA
Found at i:37150958 original size:50 final size:51
Alignment explanation
Indices: 37150843--37150963 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 51
37150833 ATGAATAAAT
* *
37150843 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATG
* *
37150894 GAAGTTACAGAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTAACATG
1 G-AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATG
37150944 AGAGTTACATAATGCATGAC
1 -GAGTTACATAATGCATGAC
37150964 TTTATTAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
50 28 0.45
51 13 0.21
52 21 0.34
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (51 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATG
Found at i:37152792 original size:12 final size:12
Alignment explanation
Indices: 37152766--37152804 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37152756 CACTTCTTCT
* *
37152766 TTACTTACTTTC
1 TTACTTGCTTAC
*
37152778 TTACTTGTTTAC
1 TTACTTGCTTAC
37152790 TTACTTGCTTAC
1 TTACTTGCTTAC
37152802 TTA
1 TTA
37152805 AATAAATCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:37153124 original size:50 final size:48
Alignment explanation
Indices: 37153006--37153200 Score: 165
Period size: 50 Copynumber: 4.0 Consensus size: 48
37152996 GATAATAACA
* * ** * * *
37153006 TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATATCCCAGACATGATCTTACATGGGACCTCTCATAT-C
* * * **
37153055 TGCCAATGCCATATTCCAGATATGGTCTTACATGGGAGTTCTCATATC
1 TGCCAATGCCATATCCCAGACATGATCTTACATGGGACCTCTCATATC
* * ** *
37153103 GGTGCCCATGCCATGTCCCAGACATGATCTTACGGGGGACCTCTCATCTC
1 --TGCCAATGCCATATCCCAGACATGATCTTACATGGGACCTCTCATATC
* * *
37153153 AATGCCAACGCCATACCCCAGACATGGTCTTACATGGGACCTCTCATA
1 --TGCCAATGCCATATCCCAGACATGATCTTACATGGGACCTCTCATA
37153201 ACCTCTAATG
Statistics
Matches: 114, Mismatches: 30, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
48 1 0.01
49 37 0.32
50 76 0.67
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
TGCCAATGCCATATCCCAGACATGATCTTACATGGGACCTCTCATATC
Found at i:37153182 original size:100 final size:99
Alignment explanation
Indices: 37153013--37153200 Score: 241
Period size: 100 Copynumber: 1.9 Consensus size: 99
37153003 ACATGCCAAA
* ** * * * * * ** *
37153013 GCCATGTCCCAGACATGATCTTACATGGGATGTTTCCTGTACTGCCAATGCCATATTCCAGATAT
1 GCCATGTCCCAGACATGATCTTACAGGGGACCTCTCATCTAATGCCAACGCCATACCCCAGACAT
**
37153078 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
66 GGTCTTACATGGGACCTCTCATATCGGTGCCCAT
*
37153112 GCCATGTCCCAGACATGATCTTACGGGGGACCTCTCATCTCAATGCCAACGCCATACCCCAGACA
1 GCCATGTCCCAGACATGATCTTACAGGGGACCTCTCATCT-AATGCCAACGCCATACCCCAGACA
37153177 TGGTCTTACATGGGACCTCTCATA
65 TGGTCTTACATGGGACCTCTCATA
37153201 ACCTCTAATG
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 33 0.45
100 41 0.55
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (99 bp):
GCCATGTCCCAGACATGATCTTACAGGGGACCTCTCATCTAATGCCAACGCCATACCCCAGACAT
GGTCTTACATGGGACCTCTCATATCGGTGCCCAT
Found at i:37155731 original size:27 final size:27
Alignment explanation
Indices: 37155710--37155989 Score: 309
Period size: 27 Copynumber: 10.4 Consensus size: 27
37155700 AGGGGTATAA
* *
37155710 CAGTTATTTTACCCTTCGGGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
** * *
37155737 TTGTAATTTTACACTTTGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
37155764 CAGTAATTTTACCCTTCGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
**
37155791 TGGTAATTTTACCCTTC-AGAGGTATTT
1 CAGTAATTTTACCCTTCGAG-GGTATTT
* *
37155818 CGGTAATTTTA-CCTTTGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
* *
37155844 CAGTAATTTTACCCTTTGAAGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
*
37155871 -TGATAATTTTACCCTTCGAGGGTATTT
1 CAG-TAATTTTACCCTTCGAGGGTATTT
*
37155898 -TGATAATTTTACCCTTC-AGGGGTATTT
1 CAG-TAATTTTACCCTTCGA-GGGTATTT
* * * *
37155925 CGGTAAATTTACCTTTCGAGTGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
*
37155952 CGGTAATTTTACCCTTCGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
*
37155979 CAATAATTTTA
1 CAGTAATTTTA
37155990 GCCATTAAGT
Statistics
Matches: 218, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.11
27 191 0.88
28 2 0.01
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (27 bp):
CAGTAATTTTACCCTTCGAGGGTATTT
Found at i:37155915 original size:107 final size:107
Alignment explanation
Indices: 37155715--37155989 Score: 388
Period size: 107 Copynumber: 2.6 Consensus size: 107
37155705 TATAACAGTT
* * ** * * *
37155715 ATTTTACCCTTCGGGGGTATTTTTGTAATTTTACACTTTGAGGGTATTTCAGTAATTTTACCCTT
1 ATTTTA-CCTTTGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTTAATAATTTTACCCTT
*
37155780 CGAGGGTATTTTGGTAATTTTACCCTTCAGAGGTATTTCGGTA
65 CGAGGGTATTTTGATAATTTTACCCTTCAGAGGTATTTCGGTA
* *
37155823 ATTTTACCTTTGAGGGTATTTCAGTAATTTTACCCTTTGAAGGTATTTTGATAATTTTACCCTTC
1 ATTTTACCTTTGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTTAATAATTTTACCCTTC
*
37155888 GAGGGTATTTTGATAATTTTACCCTTCAGGGGTATTTCGGTA
66 GAGGGTATTTTGATAATTTTACCCTTCAGAGGTATTTCGGTA
* * * * *
37155930 AATTTACCTTTCGAGTGTATTTCGGTAATTTTACCCTTCGAGGGTATTTCAATAATTTTA
1 ATTTTACCTTT-GAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTTAATAATTTTA
37155990 GCCATTAAGT
Statistics
Matches: 148, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
107 100 0.68
108 48 0.32
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (107 bp):
ATTTTACCTTTGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTTAATAATTTTACCCTTC
GAGGGTATTTTGATAATTTTACCCTTCAGAGGTATTTCGGTA
Found at i:37156942 original size:17 final size:19
Alignment explanation
Indices: 37156906--37156945 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
37156896 AATTGGCAAC
*
37156906 AAGAGAAGAAGAAACCGAA
1 AAGAGAAGAAGAAACAGAA
37156925 AAGA-AAGAAGAAA-AGAA
1 AAGAGAAGAAGAAACAGAA
37156942 AAGA
1 AAGA
37156946 TGAGGGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.70, C:0.05, G:0.25, T:0.00
Consensus pattern (19 bp):
AAGAGAAGAAGAAACAGAA
Found at i:37170899 original size:367 final size:368
Alignment explanation
Indices: 37170220--37170954 Score: 1267
Period size: 367 Copynumber: 2.0 Consensus size: 368
37170210 ACACATAAAA
**
37170220 GTGCTGGGTACGTTAGTTAAGCCGAATGGCATAACCAACCACTTGTACAAACCGTGCTTTGTCTT
1 GTGCTGGGTACGTTAGTTAAGCCGAATGGCATAACCAACCACTCATACAAACCGTGCTTTGTCTT
*
37170285 AAACACCGTTTTCCACTCATCTAGTTCTCGCATTCGGATTTGCTGATATCCACTCTTGAGATATA
66 AAACACCGTTTTCCACTCATCTAGTTCTCGCATTCGAATTTGCTGATATCCACTCTTGAGATATA
37170350 TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
131 TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
** *
37170415 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTTGACAAATATGTGCCAAGTTCCATCCTT
196 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
* * *
37170480 TTGAGCACGAAGAGCACGGGCACGATGCAAGGACTTAAGCTCTCTTGAATGTACCCCTTTTCCAT
261 TTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
37170545 CAACGTAGCTACTCGCCTTTAAAGTTCCTTAGTTTCTTTAGGG
326 CAACGTAGCTACTCGCCTTTAAAGTTCCTTAGTTTCTTTAGGG
**
37170588 GTGCTGGGTGTGTTAGTTAAGCCGAATGGCATAACCAACCACTCATAC-AACCTGTGCTTTGTCT
1 GTGCTGGGTACGTTAGTTAAGCCGAATGGCATAACCAACCACTCATACAAACC-GTGCTTTGTCT
*** * *
37170652 TAAATGTCGTTTTCCACTCATCT-GTTCTCGTATTCGAATTTGCTGATATCCACTCTTGAGATCT
65 TAAACACCGTTTTCCACTCATCTAGTTCTCGCATTCGAATTTGCTGATATCCACTCTTGAGATAT
37170716 ATTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTG
130 ATTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTG
*
37170781 CCTATACTTGATTATGATCTTGTTAATTTTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCT
195 CCTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCT
37170846 TTTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCA
260 TTTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCA
* * *
37170911 TCAACTTAGCTACTTGCCTTTGAAGTTCCTTAGTTTCTTTAGGG
325 TCAACGTAGCTACTCGCCTTTAAAGTTCCTTAGTTTCTTTAGGG
37170955 TTACTTCAAT
Statistics
Matches: 346, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
367 271 0.78
368 75 0.22
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (368 bp):
GTGCTGGGTACGTTAGTTAAGCCGAATGGCATAACCAACCACTCATACAAACCGTGCTTTGTCTT
AAACACCGTTTTCCACTCATCTAGTTCTCGCATTCGAATTTGCTGATATCCACTCTTGAGATATA
TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
TTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
CAACGTAGCTACTCGCCTTTAAAGTTCCTTAGTTTCTTTAGGG
Found at i:37179296 original size:13 final size:12
Alignment explanation
Indices: 37179258--37179293 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
37179248 TAGTAGTTTC
37179258 TTCAAAAAAAAA
1 TTCAAAAAAAAA
37179270 TTCAAAAAAAAA
1 TTCAAAAAAAAA
37179282 TTCAAAAAAAAA
1 TTCAAAAAAAAA
37179294 ATTTGGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (12 bp):
TTCAAAAAAAAA
Found at i:37186979 original size:15 final size:16
Alignment explanation
Indices: 37186948--37186982 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37186938 TCAGTATCTT
37186948 TTTTCTTTTTGCATCA
1 TTTTCTTTTTGCATCA
*
37186964 TTTTCTTTTTTC-TCA
1 TTTTCTTTTTGCATCA
37186979 TTTT
1 TTTT
37186983 TTCACTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.09, C:0.17, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCTTTTTGCATCA
Found at i:37193212 original size:40 final size:39
Alignment explanation
Indices: 37193116--37193217 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 39
37193106 GACTCTAGAT
*
37193116 CCGAAGGCATTTGTGCGAGATAC-AATTCCGGTCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGTCTAAGC
*
37193154 CCG-AGGCATTTGTGCGAGTTACTAATCTCGGGT-TAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGTCTAAG-C
* *
37193193 CTGAAGGCAATTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTA
37193218 TAACGGGCTA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
37 18 0.32
38 10 0.18
39 8 0.14
40 20 0.36
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTCCGGTCTAAGC
Found at i:37200076 original size:48 final size:47
Alignment explanation
Indices: 37199812--37200208 Score: 566
Period size: 47 Copynumber: 8.6 Consensus size: 47
37199802 GCCCTTCGGA
*
37199812 CTTATCACATTTATACACTTTCACATTCATCACATC-G-CATTA-G-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37199855 CTTATCAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37199903 CTCATCACATA-ATACACTTTCACATTCATCACATCGGCTATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37199948 CTTAT--CATATAT-CACTTTTCACATTCATCACCATCGGCCATTAGGC
1 CTTATCACATATATACAC-TTTCACATTCATCA-CATCGGCCATTAGGC
* *
37199994 CTCATCACATATATACACTTTC-CATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37200040 CTTATCACATATAATACACTTTCACATTCATCACATCGGCCATTA-G-
1 CTTATCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37200086 CTTATCACATATATATACACTTTCCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTT-CACATTCATCACATCGGCCATTAGGC
37200136 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37200183 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
37200209 CAACAATATC
Statistics
Matches: 320, Mismatches: 15, Indels: 34
0.87 0.04 0.09
Matches are distributed among these distances:
43 13 0.04
44 45 0.14
45 18 0.06
46 75 0.23
47 83 0.26
48 74 0.23
49 4 0.01
50 8 0.03
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37203612 original size:47 final size:47
Alignment explanation
Indices: 37203560--37203955 Score: 571
Period size: 47 Copynumber: 8.6 Consensus size: 47
37203550 GATAATTGTG
* *
37203560 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37203607 ATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATA-TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37203655 ATGTGAAAGTGTATATATATGTATAA-GCCTAAT-G-CGATGTGTATGA
1 ATGTGAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTG-ATGA
*
37203701 ATGTGAAAGTGTATATATGTGATAA-GCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37203747 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37203794 ATGTGAAAGT-TGATATA-GTTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGT-ATATATG-TGATAAGGCCTAATGGCCGATGTGATGA
*
37203841 ATGTGAAAGTGT-T-TATGTGA-GAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37203885 ATGTGAAAGTGTATATATGTGATAA-G-CTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37203930 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37203956 TCCGAAGGGC
Statistics
Matches: 318, Mismatches: 17, Indels: 29
0.87 0.05 0.08
Matches are distributed among these distances:
44 34 0.11
45 65 0.20
46 66 0.21
47 103 0.32
48 50 0.16
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37203753 original size:140 final size:140
Alignment explanation
Indices: 37203560--37203944 Score: 572
Period size: 138 Copynumber: 2.8 Consensus size: 140
37203550 GATAATTGTG
* *
37203560 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTA
1 ATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-TA
* *
37203625 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA-TATGTATAA-GCCTAAT
64 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGT-TG-ATAAGGCCTAAT
37203688 -G-CGATGTGTATGA
127 AGCCGATGTG-ATGA
*
37203701 ATGTGAAAGTGTATATATGTGATAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 ATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
37203766 TGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TGATATAGTTGATAAGGCCTAATAGC
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-ATATAGTTGATAAGGCCTAATAGC
37203830 CGATGTGATGA
130 CGATGTGATGA
* *
37203841 ATGTGAAAGTGT-T-TATGTGAGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 ATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
37203904 TGATAA-G-CTAATAGCCGATGTGATGAATGTGAAAGTGTATA
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
37203945 AATGTGATAA
Statistics
Matches: 227, Mismatches: 11, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
136 31 0.14
137 2 0.01
138 57 0.25
139 54 0.24
140 53 0.23
141 30 0.13
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (140 bp):
ATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTTGATAAGGCCTAATAGCC
GATGTGATGA
Found at i:37208686 original size:79 final size:81
Alignment explanation
Indices: 37208543--37208726 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
37208533 GCTACTCGTT
* * *
37208543 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
37208607 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* **
37208622 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
* *
37208685 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
37208702 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37208727 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 33 0.36
79 39 0.43
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:37208726 original size:40 final size:40
Alignment explanation
Indices: 37208524--37208726 Score: 220
Period size: 39 Copynumber: 5.1 Consensus size: 40
37208514 CGGAATTTAA
** *
37208524 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37208564 CCGGTTATAGTAACTCGCACAATTGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37208603 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37208642 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37208682 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37208722 CCGGA
1 CCGGA
37208727 CATCATTCAA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 67 0.49
40 56 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37212800 original size:54 final size:54
Alignment explanation
Indices: 37212718--37212832 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 54
37212708 TAACTAACTG
** * *
37212718 ACTAGAACTTAATTAAATTTTTATTCCAGTAATTAAATTCTCAAGCTAAAGGAA
1 ACTAGAACCGAATTAAATTTTTATTCCAGCAATTAAATTCTCAAGCTAAAAGAA
37212772 ACTAGAACCGAATT-AATTCTTTATTCCAGCAATTAAATTCTCAAGCTAAAAGAA
1 ACTAGAACCGAATTAAATT-TTTATTCCAGCAATTAAATTCTCAAGCTAAAAGAA
37212826 ACTAGAA
1 ACTAGAA
37212833 TTGGGCTCGA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
53 4 0.07
54 52 0.93
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (54 bp):
ACTAGAACCGAATTAAATTTTTATTCCAGCAATTAAATTCTCAAGCTAAAAGAA
Found at i:37214435 original size:13 final size:13
Alignment explanation
Indices: 37214417--37214444 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37214407 AGTGAACAAG
37214417 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
37214430 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
37214443 AA
1 AA
37214445 GAACTCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:37217996 original size:14 final size:14
Alignment explanation
Indices: 37217977--37218003 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37217967 CATTTCTTGG
37217977 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
37217991 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
37218004 ACTAGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:37223324 original size:13 final size:13
Alignment explanation
Indices: 37223306--37223330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37223296 CACAACGTGA
37223306 TGAAACTTTTTCG
1 TGAAACTTTTTCG
37223319 TGAAACTTTTTC
1 TGAAACTTTTTC
37223331 TTTTGATGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (13 bp):
TGAAACTTTTTCG
Found at i:37227780 original size:45 final size:45
Alignment explanation
Indices: 37227716--37227803 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
37227706 ATATATACTT
* *
37227716 GGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCC
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCC
37227761 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
37227804 TTGGTTCACA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCC
Found at i:37233699 original size:14 final size:14
Alignment explanation
Indices: 37233671--37233699 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37233661 GCTTAGTGGC
37233671 TTTTGACTTGATTT
1 TTTTGACTTGATTT
37233685 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
37233698 TT
1 TT
37233700 AAGCAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:37238638 original size:52 final size:53
Alignment explanation
Indices: 37238554--37238655 Score: 134
Period size: 52 Copynumber: 1.9 Consensus size: 53
37238544 TGATTTATGT
* * **
37238554 CTATTAAGTATGTTCTAATTCGAACATTATCAATGCATGCT-TTAAGTCACAC
1 CTATTAACTATGCTCTAATTCGAACAACATCAATGCATGCTATTAAGTCACAC
* * *
37238606 CTATTAACTATGCTCTAGTTTGAACAACATCAATGCATGTTATTAAGTCA
1 CTATTAACTATGCTCTAATTCGAACAACATCAATGCATGCTATTAAGTCA
37238656 GACTTCTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
52 34 0.81
53 8 0.19
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (53 bp):
CTATTAACTATGCTCTAATTCGAACAACATCAATGCATGCTATTAAGTCACAC
Found at i:37240097 original size:38 final size:38
Alignment explanation
Indices: 37240029--37240138 Score: 121
Period size: 39 Copynumber: 2.8 Consensus size: 38
37240019 TAAAATACGC
* * * *
37240029 ATTAAAGATGTCCTAAACTATGACATAATTAAAACCCTT
1 ATTAATGATGTTC-AAATTATGACATAATTAAAACCCAT
* * * *
37240068 ATTAATGTTGTTCAGATTATGACAAAATTAAAAACTCAT
1 ATTAATGATGTTCAAATTATGACATAATT-AAAACCCAT
*
37240107 ATTAATGATGTTCAAATAATGACATAATTAAA
1 ATTAATGATGTTCAAATTATGACATAATTAAA
37240139 TAATCGAACT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
38 16 0.28
39 42 0.72
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (38 bp):
ATTAATGATGTTCAAATTATGACATAATTAAAACCCAT
Found at i:37245728 original size:40 final size:40
Alignment explanation
Indices: 37245527--37245728 Score: 236
Period size: 39 Copynumber: 5.1 Consensus size: 40
37245517 CGGAATTTAA
** *
37245527 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37245567 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37245606 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37245645 CCGGA-ATAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37245684 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37245724 CCGGA
1 CCGGA
37245729 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
37 2 0.01
38 22 0.16
39 56 0.40
40 48 0.35
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37252634 original size:40 final size:40
Alignment explanation
Indices: 37252563--37252745 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
37252553 AGCTACTCGT
37252563 CAAATGCCTTCGGGA--TAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
37252601 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37252641 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
37252680 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37252721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37252746 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 16 0.13
39 33 0.27
40 60 0.49
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37252678 original size:79 final size:81
Alignment explanation
Indices: 37252563--37252745 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
37252553 AGCTACTCGT
* * *
37252563 CAAATGCCTTCGGG-ATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* * *
37252625 GATTTAGTAAC-TCGCA
65 AATATAGTAACTTAGCA
* **
37252641 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
* *
37252705 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
37252721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
37252746 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 17 0.19
79 52 0.58
80 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
ATATAGTAACTTAGCA
Found at i:37255419 original size:27 final size:27
Alignment explanation
Indices: 37255381--37255442 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
37255371 CTTAATTTAA
37255381 ACACAATTTAATTTGTCTAAACATTAG
1 ACACAATTTAATTTGTCTAAACATTAG
*
37255408 ACACAATTTAATTTTTCTAAACATTAG
1 ACACAATTTAATTTGTCTAAACATTAG
37255435 ACACAATT
1 ACACAATT
37255443 ATGGTGTCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (27 bp):
ACACAATTTAATTTGTCTAAACATTAG
Found at i:37280919 original size:13 final size:13
Alignment explanation
Indices: 37280901--37280929 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37280891 AAGAAACAAG
37280901 TAAGAACCAACAC
1 TAAGAACCAACAC
37280914 TAAGAACCAACAC
1 TAAGAACCAACAC
37280927 TAA
1 TAA
37280930 CAAGTGTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.28, G:0.07, T:0.10
Consensus pattern (13 bp):
TAAGAACCAACAC
Found at i:37285443 original size:14 final size:14
Alignment explanation
Indices: 37285424--37285451 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37285414 TAAAATTATA
37285424 TTTAATAATTCATT
1 TTTAATAATTCATT
37285438 TTTAATAATTCATT
1 TTTAATAATTCATT
37285452 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:37297599 original size:47 final size:47
Alignment explanation
Indices: 37297528--37297881 Score: 559
Period size: 47 Copynumber: 7.6 Consensus size: 47
37297518 CCCTTCGGGA
* * * * * *
37297528 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37297575 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37297622 CTTATCACATATACACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37297669 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37297716 CTTATCACATATACACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37297763 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37297810 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37297857 CTTATCAC--ATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
37297882 TATTCAAATA
Statistics
Matches: 285, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 17 0.06
47 268 0.94
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37302039 original size:40 final size:40
Alignment explanation
Indices: 37301995--37302266 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
37301985 CCAGCATGAT
* * * *
37301995 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
37302035 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37302075 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37302115 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37302155 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37302195 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37302235 TGCTCTTCGAGACTTAGCCCAGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
37302267 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37303748 original size:47 final size:47
Alignment explanation
Indices: 37303677--37303924 Score: 406
Period size: 47 Copynumber: 5.3 Consensus size: 47
37303667 CCCTTCAGGA
* * * * * *
37303677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37303724 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37303771 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37303818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37303865 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37303912 CTTATCACATATA
1 CTTATCACATATA
37303925 CACTGTAACA
Statistics
Matches: 188, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37305307 original size:27 final size:27
Alignment explanation
Indices: 37305277--37305481 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
37305267 ATATTGAGTC
* * * *
37305277 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37305304 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37305331 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37305359 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37305386 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37305413 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37305440 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37305467 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37305482 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37312669 original size:33 final size:32
Alignment explanation
Indices: 37312616--37312732 Score: 119
Period size: 33 Copynumber: 3.6 Consensus size: 32
37312606 TGTTAGAGCA
* * *
37312616 CTCTCTTCTTCTTCACTCG-TTCCTTGTTGACG
1 CTCTCTTCTTTTTCACTCGTTTCCTT-TTCAAG
*
37312648 CTCTCTCTCTTTTTCACTCGTTTTCTTTTCAAG
1 CTCTCT-TCTTTTTCACTCGTTTCCTTTTCAAG
* * *
37312681 CTCTCTTTCTTTTTCACTCATTTTCTTTTCAAT
1 CTCTC-TTCTTTTTCACTCGTTTCCTTTTCAAG
*
37312714 CTCTCTTTCTTTTCCACTC
1 CTCTC-TTCTTTTTCACTC
37312733 ACTTTATTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
32 6 0.08
33 63 0.84
34 6 0.08
ACGTcount: A:0.09, C:0.32, G:0.05, T:0.54
Consensus pattern (32 bp):
CTCTCTTCTTTTTCACTCGTTTCCTTTTCAAG
Found at i:37312676 original size:16 final size:15
Alignment explanation
Indices: 37312655--37312732 Score: 61
Period size: 17 Copynumber: 4.8 Consensus size: 15
37312645 ACGCTCTCTC
37312655 TCTTTTTCACTCGTTT
1 TCTTTTTCACTC-TTT
37312671 TC-TTTTCAAGCTCTCTT
1 TCTTTTTC-A-CTCT-TT
37312688 TCTTTTTCACTCATTT
1 TCTTTTTCACTC-TTT
37312704 TC-TTTTCAATCTCTCTT
1 TCTTTTTC-A-CTCT-TT
*
37312721 TCTTTTCCACTC
1 TCTTTTTCACTC
37312733 ACTTTATTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 18
0.73 0.01 0.25
Matches are distributed among these distances:
15 10 0.19
16 16 0.31
17 17 0.33
18 9 0.17
ACGTcount: A:0.10, C:0.29, G:0.03, T:0.58
Consensus pattern (15 bp):
TCTTTTTCACTCTTT
Found at i:37312691 original size:17 final size:16
Alignment explanation
Indices: 37312648--37312737 Score: 71
Period size: 16 Copynumber: 5.5 Consensus size: 16
37312638 CTTGTTGACG
*
37312648 CTCTCTCTCTTTTTC-A
1 CTCTCTTTC-TTTTCAA
37312664 CTCGT-TTTCTTTTCAA
1 CTC-TCTTTCTTTTCAA
37312680 GCTCTCTTTCTTTTTC-A
1 -CTCTCTTTC-TTTTCAA
37312697 CTCAT-TTTCTTTTCAA
1 CTC-TCTTTCTTTTCAA
*
37312713 TCTCTCTTTCTTTTCCA
1 -CTCTCTTTCTTTTCAA
*
37312730 CTCACTTT
1 CTCTCTTT
37312738 ATTCACATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 18
0.75 0.04 0.22
Matches are distributed among these distances:
15 10 0.16
16 24 0.39
17 23 0.37
18 5 0.08
ACGTcount: A:0.10, C:0.31, G:0.02, T:0.57
Consensus pattern (16 bp):
CTCTCTTTCTTTTCAA
Found at i:37312733 original size:33 final size:33
Alignment explanation
Indices: 37312647--37312733 Score: 138
Period size: 33 Copynumber: 2.6 Consensus size: 33
37312637 CCTTGTTGAC
* *
37312647 GCTCTCTCTCTTTTTCACTCGTTTTCTTTTCAA
1 GCTCTCTTTCTTTTTCACTCATTTTCTTTTCAA
37312680 GCTCTCTTTCTTTTTCACTCATTTTCTTTTCAA
1 GCTCTCTTTCTTTTTCACTCATTTTCTTTTCAA
* *
37312713 TCTCTCTTTCTTTTCCACTCA
1 GCTCTCTTTCTTTTTCACTCA
37312734 CTTTATTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.10, C:0.31, G:0.03, T:0.55
Consensus pattern (33 bp):
GCTCTCTTTCTTTTTCACTCATTTTCTTTTCAA
Found at i:37318769 original size:13 final size:13
Alignment explanation
Indices: 37318738--37318770 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
37318728 CAAATATCGA
37318738 AATTTTAATTCTT
1 AATTTTAATTCTT
*
37318751 AA-TTTATTTCTT
1 AATTTTAATTCTT
37318763 AATTTTAA
1 AATTTTAA
37318771 AGCTTAGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (13 bp):
AATTTTAATTCTT
Found at i:37328711 original size:23 final size:22
Alignment explanation
Indices: 37328677--37328779 Score: 66
Period size: 23 Copynumber: 4.4 Consensus size: 22
37328667 AAAACACTTG
37328677 TTTTTTCATTTTCACACTCTTTT
1 TTTTTTC-TTTTCACACTCTTTT
**
37328700 TCTTTTTCTTTTGTCACTCTTGTT
1 T-TTTTTCTTTTCACACTCTT-TT
* * *
37328724 TTTTTATCACTCTCATCATTCTTTTCT
1 TTTTT-TC-TTTTCA-CACTC-TTT-T
37328751 TTTTTTCTTTT--CACTCTTTT
1 TTTTTTCTTTTCACACTCTTTT
37328771 TGTTTTTCT
1 T-TTTTTCT
37328780 CTTTTTCTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
20 2 0.03
21 10 0.16
22 4 0.06
23 16 0.26
24 11 0.18
25 4 0.06
26 7 0.11
27 8 0.13
ACGTcount: A:0.09, C:0.21, G:0.03, T:0.67
Consensus pattern (22 bp):
TTTTTTCTTTTCACACTCTTTT
Found at i:37328781 original size:14 final size:14
Alignment explanation
Indices: 37328745--37328794 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
37328735 CTCATCATTC
*
37328745 TTTTCTTTTTTTCT
1 TTTTCTCTTTTTCT
* *
37328759 TTTCACTCTTTTTGT
1 TTT-TCTCTTTTTCT
37328774 TTTTCTCTTTTTCT
1 TTTTCTCTTTTTCT
*
37328788 CTTTCTC
1 TTTTCTC
37328795 GCTCAATAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTTCTCTTTTTCT
Done.