Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 128 of 211
Found at i:37328782 original size:23 final size:22
Alignment explanation
Indices: 37328691--37328784 Score: 75
Period size: 22 Copynumber: 4.0 Consensus size: 22
37328681 TTCATTTTCA
37328691 CACTCTTTTTCTTTTTCT-TTTGT
1 CACTCTTTTT-TTTTTCTCTTT-T
**
37328714 CACTCTTGTTTTTTTATCACTCTCAT
1 CACTCTT-TTTTTTT-T--CTCTTTT
*
37328740 CATTCTTTTCTTTTTT-TCTTTT
1 CACTCTTTT-TTTTTTCTCTTTT
37328762 CACTCTTTTTGTTTTTCTCTTTT
1 CACTCTTTTT-TTTTTCTCTTTT
37328785 TCTCTTTCTC
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
21 1 0.02
22 17 0.30
23 17 0.30
24 4 0.07
25 3 0.05
26 14 0.25
27 1 0.02
ACGTcount: A:0.07, C:0.22, G:0.03, T:0.67
Consensus pattern (22 bp):
CACTCTTTTTTTTTTCTCTTTT
Found at i:37328791 original size:22 final size:23
Alignment explanation
Indices: 37328691--37328784 Score: 77
Period size: 23 Copynumber: 4.0 Consensus size: 23
37328681 TTCATTTTCA
37328691 CACTCTTTTTCTTTTTCT-TTTGT
1 CACTCTTTTTCTTTTTCTCTTT-T
**
37328714 CACTCTTGTTT-TTTTATCACTCTCAT
1 CACTCTT-TTTCTTTT-T--CTCTTTT
* *
37328740 CATTC-TTTTCTTTTTTTCTTTT
1 CACTCTTTTTCTTTTTCTCTTTT
*
37328762 CACTCTTTTTGTTTTTCTCTTTT
1 CACTCTTTTTCTTTTTCTCTTTT
37328785 TCTCTTTCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 14
0.71 0.12 0.18
Matches are distributed among these distances:
22 8 0.15
23 26 0.47
24 8 0.15
25 5 0.09
26 7 0.13
27 1 0.02
ACGTcount: A:0.07, C:0.22, G:0.03, T:0.67
Consensus pattern (23 bp):
CACTCTTTTTCTTTTTCTCTTTT
Found at i:37341196 original size:74 final size:74
Alignment explanation
Indices: 37341075--37341222 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
37341065 CAATTACAAA
*
37341075 ATAATCCAAGAAACATACTCATAATGGGTCAGTCTAATATGTTGTTCTCTAACACACATATTCAT
1 ATAATCCAAGAAACATACTCATAATGGGTCAGTCCAATATGTTGTTCTCTAACACACATATTCAT
37341140 GCATCGATT
66 GCATCGATT
37341149 ATAATCCAAGAAACATACTCATAATGGGTCAGTCCAATATGTTGTTCTCTAACACACATATTCAT
1 ATAATCCAAGAAACATACTCATAATGGGTCAGTCCAATATGTTGTTCTCTAACACACATATTCAT
37341214 GCATCGATT
66 GCATCGATT
37341223 CTGACATTCC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (74 bp):
ATAATCCAAGAAACATACTCATAATGGGTCAGTCCAATATGTTGTTCTCTAACACACATATTCAT
GCATCGATT
Found at i:37341836 original size:52 final size:53
Alignment explanation
Indices: 37341733--37341837 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 53
37341723 CAATTAAGAA
* * * **
37341733 GTCTGACTTAATAACAAGCATTGATGTTGTCCGAACTAGAGCATAGTTAATAG
1 GTCTAACTTAATAACAAGCATTGATGTTGTCCGAAATAGAACATACATAATAG
*
37341786 GTCTAACTTAA-AACATGCATTGATGTTGTCCGAAATAGAACATACATAATAG
1 GTCTAACTTAATAACAAGCATTGATGTTGTCCGAAATAGAACATACATAATAG
37341838 ACATAAACCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 36 0.78
53 10 0.22
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (53 bp):
GTCTAACTTAATAACAAGCATTGATGTTGTCCGAAATAGAACATACATAATAG
Found at i:37347775 original size:21 final size:21
Alignment explanation
Indices: 37347746--37347797 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
37347736 TTCTCTCTCG
*
37347746 CTTTAATTTTCGCCTTTTTCA
1 CTTTTATTTTCGCCTTTTTCA
**
37347767 -TTTTCATTTTCTTCTTTTTCA
1 CTTTT-ATTTTCGCCTTTTTCA
37347788 CTTTTATTTT
1 CTTTTATTTT
37347798 TCTCTTCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 19 0.73
22 4 0.15
ACGTcount: A:0.12, C:0.19, G:0.02, T:0.67
Consensus pattern (21 bp):
CTTTTATTTTCGCCTTTTTCA
Found at i:37353630 original size:30 final size:30
Alignment explanation
Indices: 37353589--37353660 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 30
37353579 CACTATCTCT
* *
37353589 TTTTCTCTCTTTCTCTTCTTGTTTTTGCAACTC
1 TTTTCTTTCTTTCTC-TC-T-TATTTGCAACTC
37353622 GTTTTCTTT-TTTCTCTCTTATTTGCAACTC
1 -TTTTCTTTCTTTCTCTCTTATTTGCAACTC
37353652 TTTT-TTTCT
1 TTTTCTTTCT
37353661 GAGTTCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
28 3 0.09
29 5 0.14
30 11 0.31
31 1 0.03
32 2 0.06
33 6 0.17
34 7 0.20
ACGTcount: A:0.07, C:0.24, G:0.06, T:0.64
Consensus pattern (30 bp):
TTTTCTTTCTTTCTCTCTTATTTGCAACTC
Found at i:37355624 original size:40 final size:40
Alignment explanation
Indices: 37355439--37355624 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
37355429 GCTCCTCGTT
* *
37355439 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37355479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37355519 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37355559 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
37355600 CCAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37355625 CATCATTCAA
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 116 0.90
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37363463 original size:40 final size:40
Alignment explanation
Indices: 37363318--37363463 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
37363308 GCTCCTCGTT
* *
37363318 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37363358 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37363398 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37363439 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37363464 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37365640 original size:16 final size:16
Alignment explanation
Indices: 37365619--37365660 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
37365609 GCACACCACC
*
37365619 TTTTTTT-TACATGAA
1 TTTTTTTATACATCAA
*
37365634 TTTTTTTATATATCAA
1 TTTTTTTATACATCAA
37365650 TTTTTTATATA
1 TTTTTT-TATA
37365661 TATATTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 7 0.30
16 12 0.52
17 4 0.17
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (16 bp):
TTTTTTTATACATCAA
Found at i:37368637 original size:27 final size:27
Alignment explanation
Indices: 37368588--37368640 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
37368578 CACACGTTTC
37368588 ATTTAATTTCACATTTTAGTCCCTAAAA
1 ATTTAATTTCACATTTTA-TCCCTAAAA
*
37368616 ATTTATTTTCACAATTTT-TCCCTAA
1 ATTTAATTTCAC-ATTTTATCCCTAA
37368641 TTACTCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 11 0.48
29 5 0.22
ACGTcount: A:0.32, C:0.19, G:0.02, T:0.47
Consensus pattern (27 bp):
ATTTAATTTCACATTTTATCCCTAAAA
Found at i:37388967 original size:41 final size:41
Alignment explanation
Indices: 37388910--37389011 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
37388900 GCTTAGAGCT
*
37388910 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
37388951 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
37388992 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
37389012 TACTGAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:37396564 original size:41 final size:41
Alignment explanation
Indices: 37396519--37396620 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
37396509 GCTTAGAGCT
*
37396519 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
37396560 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
37396601 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
37396621 TACTGAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:37398732 original size:63 final size:59
Alignment explanation
Indices: 37398648--37398789 Score: 160
Period size: 63 Copynumber: 2.3 Consensus size: 59
37398638 AATCTGACTT
* * * * *
37398648 AGACAAGTATTAATGCGGTACAAACTAAGACACCATTAATAGACTTAGAACAACTAAACAATC
1 AGACATGTAATAATGCTGTACAAACTAAGACACAATTAATAGAATT--AACAA--AAACAATC
* * *
37398711 AGACAT-TCAATAATGCTGTACAATCTAAGACACAATTAATAGAATTAACTAAAATAATC
1 AGACATGT-AATAATGCTGTACAAACTAAGACACAATTAATAGAATTAACAAAAACAATC
37398770 AGACATGTAATAATGCTGTA
1 AGACATGTAATAATGCTGTA
37398790 TGAAATCAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
59 25 0.36
60 1 0.01
61 4 0.06
62 1 0.01
63 38 0.55
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25
Consensus pattern (59 bp):
AGACATGTAATAATGCTGTACAAACTAAGACACAATTAATAGAATTAACAAAAACAATC
Found at i:37401081 original size:45 final size:45
Alignment explanation
Indices: 37401017--37401109 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
37401007 ACAGATAGTT
* *
37401017 GGTGGATTCAGCAAATAGCAACCACCTTATTAATCAATGATGTCC
1 GGTGGAATCAGCAAATAGCAACCACCTTAATAATCAATGATGTCC
* * *
37401062 GGTGGAATCAGCACATAGCAACCACTTTAATAATCAATGATGTTC
1 GGTGGAATCAGCAAATAGCAACCACCTTAATAATCAATGATGTCC
37401107 GGT
1 GGT
37401110 TCACATAGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCAAATAGCAACCACCTTAATAATCAATGATGTCC
Found at i:37404113 original size:42 final size:42
Alignment explanation
Indices: 37404033--37404114 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
37404023 TGTTTTCTCT
* **
37404033 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
37404075 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
37404115 CATACGGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:37406912 original size:16 final size:16
Alignment explanation
Indices: 37406891--37406922 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37406881 GTTTTGTTGC
*
37406891 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
37406907 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
37406923 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:37407109 original size:45 final size:45
Alignment explanation
Indices: 37407052--37407140 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
37407042 AACAGATACT
* *
37407052 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATAATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
* *
37407097 CGGTGGAATCAGCACATAGCAACCACTTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGT
37407141 TCGATTCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
Found at i:37407206 original size:51 final size:51
Alignment explanation
Indices: 37407151--37407335 Score: 225
Period size: 51 Copynumber: 3.6 Consensus size: 51
37407141 TCGATTCACA
* *
37407151 TAGTAGCCTGCACATAGTACTACACATGTGA-CTATTACCATTCGATACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA-TACCATTCGGTACACG
* * * * * *
37407202 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATACCATTCGGTACACG
*
37407253 TAGTAGCC-GTCACATAGTACTACACATGCGACCTAT--CATTCCGGTACACG
1 TAGTAGCCTG-CACATAGTACTACACATGTGACCTATACCATT-CGGTACACG
*
37407303 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACATGTGACC
37407336 ATCACTTTCA
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 3 0.03
50 37 0.32
51 72 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATACCATTCGGTACACG
Found at i:37407356 original size:101 final size:101
Alignment explanation
Indices: 37407145--37407367 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 101
37407135 TGATGTTCGA
* *
37407145 TTCACATAGTAGCCTGCACATAGTACTACACATGTGACTATTACCATTCGATACATGTAGTAGCC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACTATTA-CATTCGATACACGTAGTAGCC
* * *
37407210 TGCACATAGTACTACACATGTGATCGAAACTATTCGG
65 TGCACATAGTACTACACACGTGATCCAAACTATTCCG
* * *
37407247 TACGCATAGTAGCC-GTCACATAGTACTACACATGCGACCTA-T-CATTCCGGTACACGTAGTAG
1 TTCACATAGTAGCCTG-CACATAGTACTACACATGCGA-CTATTACATT-CGATACACGTAGTAG
* *
37407309 CCTGCACATAGTACTACACACGTGA-CCATCACT-TTCACT
63 CCTGCACATAGTACTACACACGTGATCCA-AACTATTC-CG
* *
37407348 TTCACATAGTGGCCTACACA
1 TTCACATAGTAGCCTGCACA
37407368 CAGCCCATGC
Statistics
Matches: 101, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
100 9 0.09
101 56 0.55
102 33 0.33
103 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (101 bp):
TTCACATAGTAGCCTGCACATAGTACTACACATGCGACTATTACATTCGATACACGTAGTAGCCT
GCACATAGTACTACACACGTGATCCAAACTATTCCG
Found at i:37409362 original size:39 final size:37
Alignment explanation
Indices: 37409282--37409429 Score: 111
Period size: 39 Copynumber: 3.8 Consensus size: 37
37409272 TTCAACAAAC
* * *
37409282 ATTAAAGATGTCCAAATTTAAACATATTTAAAACATGT
1 ATTAAAGATGTCCAAATAT-GACATAATTAAAACATGT
37409320 ATTAAAGATGTCCTAAACTATGACATAATTAAAACCAT-T
1 ATTAAAGATGTCC-AAA-TATGACATAATTAAAA-CATGT
* * * * *
37409359 ATTAATGTTGTTCAGATTATGACATAATTAAAA-ATTCAT
1 ATTAAAGATGTCCA-AATATGACATAATTAAAACA-T-GT
** *
37409398 ATTACTGATGTTCAAATTATGACATAATTAAA
1 ATTAAAGATGTCCAAA-TATGACATAATTAAA
37409430 GACTCAAACT
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 31 0.34
39 54 0.59
40 5 0.05
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (37 bp):
ATTAAAGATGTCCAAATATGACATAATTAAAACATGT
Found at i:37409388 original size:38 final size:38
Alignment explanation
Indices: 37409319--37409429 Score: 125
Period size: 39 Copynumber: 2.9 Consensus size: 38
37409309 TTAAAACATG
* * *
37409319 TATTAAAGATGTCCTAAACTATGACATAATTAAAA-CCA
1 TATTAATGATGTTC-AAATTATGACATAATTAAAATCCA
* * *
37409357 TTATTAATGTTGTTCAGATTATGACATAATTAAAAATTCA
1 -TATTAATGATGTTCAAATTATGACATAATT-AAAATCCA
*
37409397 TATTACTGATGTTCAAATTATGACATAATTAAA
1 TATTAATGATGTTCAAATTATGACATAATTAAA
37409430 GACTCAAACT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
38 17 0.28
39 42 0.69
40 2 0.03
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (38 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAATCCA
Found at i:37411104 original size:19 final size:19
Alignment explanation
Indices: 37411080--37411121 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
37411070 TTCAATCTCA
37411080 TTTTCAAACTCTCTTTCAT
1 TTTTCAAACTCTCTTTCAT
* * *
37411099 TTTTCATAGTCTCTTTTAT
1 TTTTCAAACTCTCTTTCAT
37411118 TTTT
1 TTTT
37411122 GAAAACTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.19, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTCAAACTCTCTTTCAT
Found at i:37422354 original size:20 final size:20
Alignment explanation
Indices: 37422329--37422367 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37422319 TGAGTTATTT
37422329 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
37422349 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
37422368 GAAGACAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:37425906 original size:45 final size:45
Alignment explanation
Indices: 37425837--37426046 Score: 224
Period size: 45 Copynumber: 4.7 Consensus size: 45
37425827 TATAGAGTAT
* *
37425837 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCATCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
*
37425882 CATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
* * *** *
37425927 CATTGATTATAAAGGTGGTTGCTATGTGCTAACTCCACCGAAAAT
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
** * * * * ** *
37425972 CATTGAAAATAGAGGTGGTTGTTATATGCTGGTTCCACCGAATAT
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
* * *
37426017 AATTTATTATAAGGGTGG-TGCTATGTGCTG
1 CATTGATTATAAAGGTGGTTGCTATGTGCTG
37426047 GTCCATCATG
Statistics
Matches: 138, Mismatches: 27, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 10 0.07
45 128 0.93
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
Found at i:37442388 original size:50 final size:50
Alignment explanation
Indices: 37442313--37442500 Score: 232
Period size: 50 Copynumber: 3.8 Consensus size: 50
37442303 TTTCTTGTAC
* * * * ** * *
37442313 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * **
37442363 TGCCCATGCCATGTCGCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
37442413 TGCTAACGCCAAGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
37442463 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC
37442501 ATCTTTACCC
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 117 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:37451666 original size:13 final size:13
Alignment explanation
Indices: 37451645--37451674 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37451635 GCATCTTTAT
*
37451645 TTAATGTTTTGCA
1 TTAAAGTTTTGCA
37451658 TTAAAGTTTTGCA
1 TTAAAGTTTTGCA
37451671 TTAA
1 TTAA
37451675 TACATCTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (13 bp):
TTAAAGTTTTGCA
Found at i:37455285 original size:27 final size:27
Alignment explanation
Indices: 37455251--37455428 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37455241 TAAATTGTAC
37455251 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37455278 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37455304 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37455332 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37455360 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37455387 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37455414 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37455429 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37455365 original size:82 final size:81
Alignment explanation
Indices: 37455252--37455407 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37455242 AAATTGTACA
* *
37455252 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37455316 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37455333 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37455398 TGCGAGTTGA
65 TGCGAATTGA
37455408 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37455419 original size:82 final size:81
Alignment explanation
Indices: 37455248--37455428 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37455238 GGTTAAATTG
* *
37455248 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37455313 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37455329 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37455393 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37455411 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37455429 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37463129 original size:27 final size:27
Alignment explanation
Indices: 37463095--37463272 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37463085 TAAATTGTAC
37463095 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37463122 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37463148 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37463176 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37463204 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37463231 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37463258 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37463273 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37463209 original size:82 final size:81
Alignment explanation
Indices: 37463096--37463251 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37463086 AAATTGTACA
* *
37463096 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37463160 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37463177 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37463242 TGCGAGTTGA
65 TGCGAATTGA
37463252 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37463263 original size:82 final size:81
Alignment explanation
Indices: 37463092--37463272 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37463082 GGTTAAATTG
* *
37463092 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37463157 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37463173 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37463237 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37463255 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37463273 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37466662 original size:21 final size:22
Alignment explanation
Indices: 37466636--37466680 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
37466626 GGGCAAGACA
37466636 TGTCATAGACATGT-GTGTTGG
1 TGTCATAGACATGTCGTGTTGG
37466657 TGTCATAGACATGTCGTGTTGG
1 TGTCATAGACATGTCGTGTTGG
37466679 TG
1 TG
37466681 CATCATGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.18, C:0.11, G:0.33, T:0.38
Consensus pattern (22 bp):
TGTCATAGACATGTCGTGTTGG
Found at i:37468013 original size:40 final size:39
Alignment explanation
Indices: 37467929--37468113 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
37467919 TTGAATGATG
* * * *
37467929 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37467969 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
37468009 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37468048 TCCGGGTTAAGTCCCGAAGGCAATTGTACGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
37468089 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
37468114 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37468065 original size:79 final size:81
Alignment explanation
Indices: 37467929--37468113 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
37467919 TTGAATGATG
* *
37467929 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
37467993 TGTGCGAGATACTA-A
66 TGTACGAGATACTATA
* * * **
37468008 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37468070 ATTGTACGAGTTACTATA
64 ATTGTACGAGATACTATA
* *
37468088 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37468114 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTACGAGATACTATA
Found at i:37468135 original size:79 final size:79
Alignment explanation
Indices: 37467982--37468136 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
37467972 GGACTAAGAT
* * * **
37467982 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
37468047 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
37468061 CCGAAGGCAATTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
37468124 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
37468137 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 25 0.38
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:37474942 original size:37 final size:37
Alignment explanation
Indices: 37474892--37474970 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37474882 TTATTACGAA
* *
37474892 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37474929 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37474966 GTCTT
1 GTCTT
37474971 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37475167 original size:47 final size:47
Alignment explanation
Indices: 37475089--37475575 Score: 834
Period size: 47 Copynumber: 10.4 Consensus size: 47
37475079 CCCTTCGGGA
* * * * * *
37475089 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37475136 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37475230 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37475277 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37475324 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475371 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475416 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37475463 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37475510 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475557 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37475576 GTCTTGGCTG
Statistics
Matches: 420, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 44 0.10
47 376 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37475464 original size:186 final size:186
Alignment explanation
Indices: 37475089--37475569 Score: 827
Period size: 186 Copynumber: 2.6 Consensus size: 186
37475079 CCCTTCGGGA
* * * * * * * * *
37475089 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
37475154 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACACTTTCACATTCATCACATC
* *
37475219 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475277 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
*
37475342 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGG
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGG
37475407 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37475463 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
37475528 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
37475570 TACACTGTCT
Statistics
Matches: 279, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
186 187 0.67
188 92 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (186 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37475498 original size:233 final size:234
Alignment explanation
Indices: 37475089--37475575 Score: 850
Period size: 233 Copynumber: 2.1 Consensus size: 234
37475079 CCCTTCGGGA
* * * * *
37475089 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACA-ATATACAC
37475154 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
37475219 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
130 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
* *
37475284 CATATATACACTTTCACATTCATCACATCGGCTATTAGGC
195 CACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37475324 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATACACT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATACACT
37475388 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
37475453 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
131 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
37475518 ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
37475557 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37475576 GTCTTGGCTG
Statistics
Matches: 240, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
233 194 0.81
235 46 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (234 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37481918 original size:47 final size:44
Alignment explanation
Indices: 37481862--37482023 Score: 139
Period size: 47 Copynumber: 3.5 Consensus size: 44
37481852 CTATAAAAAG
* *
37481862 TATAAAAATATGTGTGTATATATATACATATTTTAAAATTATTAAA
1 TATAAAAA-ACGTATGTATATATATA-ATATTTTAAAATTATTAAA
** * *
37481908 TATAACAAATATATATGTATATATATAA-ATTATAAAATATATTTATA
1 TATAA-AAA-ACGTATGTATATATATAATATTTTAAAAT-TA-TTAAA
* * ** *
37481955 TGTTACAAGAACGTATGTATGCATAT-ATATTTTAAAATTATAAAA
1 T-ATA-AAAAACGTATGTATATATATAATATTTTAAAATTATTAAA
37482000 TATAAAAAACGTATGTATATATAT
1 TATAAAAAACGTATGTATATATAT
37482024 GGATCATAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 17 0.18
44 2 0.02
45 13 0.14
46 11 0.12
47 45 0.48
48 4 0.04
49 1 0.01
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.41
Consensus pattern (44 bp):
TATAAAAAACGTATGTATATATATAATATTTTAAAATTATTAAA
Found at i:37482083 original size:21 final size:21
Alignment explanation
Indices: 37482042--37482083 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37482032 AAACACGTGT
* *
37482042 ATGTATATATATATTAGAAAA
1 ATGTATATATATATAACAAAA
*
37482063 ATGTATGTATATATAACAAAA
1 ATGTATATATATATAACAAAA
37482084 TTTTGAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (21 bp):
ATGTATATATATATAACAAAA
Found at i:37483744 original size:115 final size:115
Alignment explanation
Indices: 37483538--37483773 Score: 307
Period size: 115 Copynumber: 2.1 Consensus size: 115
37483528 CTCCTTCCAA
* * **
37483538 TCCACTGTGTCTTGTTGCTGCAATCCACTCCACTGCACTTCAGAGAGATATGACTTGTAGTTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* *
37483603 ATGCAGTCTGCTATAACTTTAAGGGGATGAGATTTGTGGTTTTAGTCTAC
66 ATGCAGTCTGCTATAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
* *
37483653 TCCACTGTGTCTCGTTGCTTCAATCCACTCTACTACACTTCAGAGAGATATGACTTGTAACTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* * * * *
37483718 AT-C-TTCTTTGC-AGTAACTTCAGGGGGACGAGATTTTTGGTTTTAGTGTGC
66 ATGCAGTC--TGCTA-TAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
37483768 TCCACT
1 TCCACT
37483774 ACAACATCAG
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
113 2 0.02
114 2 0.02
115 101 0.96
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (115 bp):
TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
ATGCAGTCTGCTATAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
Found at i:37484152 original size:223 final size:225
Alignment explanation
Indices: 37483865--37484302 Score: 702
Period size: 223 Copynumber: 2.0 Consensus size: 225
37483855 AGTCTACTCT
* *
37483865 ACTGCAACTTCAGGGAGATAAGACTTTCATATTCAACCTGTCCCACTACAACTTCAGAGGGATAA
1 ACTGCAAATTCAGGGAGATAAGACTTTCATATTCAACCTGCCCCACTACAACTTCAGAGGGATAA
* *
37483930 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAATGTTTGATATGATCTACTCTA
66 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
* ** * * *
37483995 TTGCATTTTCAGAGAGATGAGATTTGGTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGTG
131 CTGCAACTTCAGAGAAATGAGATCTGGTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
37484060 AAATAAGATTTGCTATCTTTAATTTGCTCC
196 AAATAAGATTTGCTATCTTTAATTTGCTCC
* * *
37484090 ACTGCAAATTTAGGGAGATAAGAC-TT-ATATTCAACTTGCCCCACTTCAACTTCATG-GGGATA
1 ACTGCAAATTCAGGGAGATAAGACTTTCATATTCAACCTGCCCCACTACAACTTCA-GAGGGATA
* *
37484152 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTTAGAGAGATAAAGTTTGATATGATCTACGCT
65 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCT
*
37484217 ACTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGG
130 ACTGCAACTTCAGAGAAATGAGATCTGGTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGG
37484282 GAAATAAGATTTGCTATCTTT
195 GAAATAAGATTTGCTATCTTT
37484303 CATCTGCTTT
Statistics
Matches: 196, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
223 171 0.87
224 3 0.02
225 22 0.11
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (225 bp):
ACTGCAAATTCAGGGAGATAAGACTTTCATATTCAACCTGCCCCACTACAACTTCAGAGGGATAA
GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
CTGCAACTTCAGAGAAATGAGATCTGGTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
AAATAAGATTTGCTATCTTTAATTTGCTCC
Found at i:37484196 original size:44 final size:44
Alignment explanation
Indices: 37483861--37484202 Score: 146
Period size: 44 Copynumber: 7.7 Consensus size: 44
37483851 CTTTAGTCTA
* *
37483861 CTCTACTGCAACTTCAGGGAGATAAGACTTT-CATA-TTCAACCTG
1 CTCTACTGCAACTTCAGAGAGATAAG-GTTTGC-TACTTCAACCTG
* * *
37483905 -TCCCACTACAACTTCAGAGGGATAAGGTTTGCTACTTCAACCTG
1 CT-CTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* * * * * *
37483949 CTCTACTGCAACTTCAAAGAGATAATGTTTGATA--T-GATCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* ** ** * *
37483990 CTCTATTGCATTTTCAGAGAGATGAGATTTGGTATTTATAGCTTTAATCTG
1 CTCTACTGCAACTTCAGAGAGAT-A-A---GGT-TTGCTA-CTTCAACCTG
* * * * * **
37484041 -TTTCACTGCAACTTCAGTGAAATAAGATTTGCTATCTTTAATTTG
1 CTCT-ACTGCAACTTCAGAGAGATAAGGTTTGCTA-CTTCAACCTG
* * * * ** * *
37484086 CTCCACTGCAAATTTAGGGAGATAAGACTT-ATA-TTCAACTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* * * *
37484128 CCCCACTTCAACTTCATG-GGGATAAGGTTTGCTACTTCAACCTG
1 CTCTACTGCAACTTCA-GAGAGATAAGGTTTGCTACTTCAACCTG
* *
37484172 CTCTACTGCAACTTTAGAGAGATAAAGTTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTG
37484203 ATATGATCTA
Statistics
Matches: 220, Mismatches: 58, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
41 22 0.10
42 30 0.14
43 11 0.05
44 89 0.40
45 35 0.16
46 5 0.02
47 5 0.02
49 1 0.00
50 4 0.02
51 18 0.08
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (44 bp):
CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
Found at i:37484479 original size:89 final size:89
Alignment explanation
Indices: 37484324--37484735 Score: 363
Period size: 89 Copynumber: 4.6 Consensus size: 89
37484314 CTACAAACTA
* * * * *
37484324 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTA-AGATCTGCTATCTTTAGTCTGCTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAG-ACAGATCTGTTATATTCAATCTGCTT
*
37484388 CGCT-ACA-AACCCAGGGAGGCAAGAC
65 CGCTGACAGAA--CAGGAAGGCAAGAC
* * * *
37484413 TGGTGTCTTCAATCTACTTCGCTGTCAGTAC-GGAAAGACGAGATCTGTTATATTCAATCTTCTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGAC-AGATCTGTTATATTCAATCTGCTT
* * *
37484477 CGCTGTCAGTACAGGAAGGCAAGGC
65 CGCTGACAGAACAGGAAGGCAAGAC
* ** *
37484502 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGG-AAGGCAAGATCTGTTAGCTTCAGTCTGCTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGAC-AGATCTGTTATATTCAATCTGCTT
* * * * ** *
37484566 TGCTGTCAGTAGAAAAAGGCAAGGC
65 CGCTGACAGAACAGGAAGGCAAGAC
* * * *
37484591 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGG-AAGGCAAGATTTGTTATGTTCAGTCTGCTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGAC-AGATCTGTTATATTCAATCTGCTT
* * * * *
37484655 CGCTGTCA-ATACAGAAAGACATGGC
65 CGCTGACAGA-ACAGGAAGGCAAGAC
* * * *
37484680 TGGTGTCTTCGATCTGCTTCGCTGTCAATACAGG-AAGGCAAGATCTGTTATCTTCA
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGAC-AGATCTGTTATATTCA
37484736 CTGATCTGTT
Statistics
Matches: 278, Mismatches: 39, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
87 1 0.00
88 5 0.02
89 267 0.96
90 4 0.01
91 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGACAGATCTGTTATATTCAATCTGCTTC
GCTGACAGAACAGGAAGGCAAGAC
Found at i:37484585 original size:45 final size:45
Alignment explanation
Indices: 37484419--37484735 Score: 186
Period size: 45 Copynumber: 7.1 Consensus size: 45
37484409 AGACTGGTGT
* * ** * * *
37484419 CTTCAATCTACTTCGCTGTCAGTACGGAAAGACGAGATCTGTTAT
1 CTTCAGTCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
* * * ** * *
37484464 ATTCAATCTTCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGGT-G
1 CTTCAGTCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
* **
37484507 TCTTC-GATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAG
1 -CTTCAG-TCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
* * * *
37484553 CTTCAGTCTGCTTTGCTGTCAGTAGAAAAAGGCAAG-GCTGGT-G
1 CTTCAGTCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
* ** *
37484596 TCTTC-GATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGTTATG
1 -CTTCAG-TCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTA-G
* * * * * *
37484643 -TTCAGTCTGCTTCGCTGTCAATACAGAAAGACATG-GCTGGT-G
1 CTTCAGTCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
* ** *
37484685 TCTTC-GATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTAT
1 -CTTCAG-TCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
37484731 CTTCA
1 CTTCA
37484736 CTGATCTGTT
Statistics
Matches: 211, Mismatches: 44, Indels: 33
0.73 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 101 0.48
45 102 0.48
46 3 0.01
47 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (45 bp):
CTTCAGTCTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGTTAG
Found at i:37484658 original size:178 final size:177
Alignment explanation
Indices: 37484324--37484735 Score: 531
Period size: 178 Copynumber: 2.3 Consensus size: 177
37484314 CTACAAACTA
* * *
37484324 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAGATCTGCTATCTTTAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
*** * *
37484389 GCTACAAACCCAGGGAGGCAAGACTGGTGTCTTCAATCTACTTCGCTGTCAGTACGGAAAGACGA
66 GCTACAAA-CCAAAAAGGCAAGACTGGTGTCTTCAATCTACTTCACTGTCAGTACGGAAAGACAA
* * * *
37484454 GATCTGTTATATTCAATCTTCTTCGCTGTCAGTACAGGAAGGCAAGGC
130 GATCTGTTATATTCAATCTGCTTCGCTGTCAATACAGAAAGACAAGGC
* *
37484502 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
* * * * * * *
37484567 GCTGTCAGTA-GAAAAAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGG-AAGGC
66 GCT-ACA-AACCAAAAAGGCAAGACTGGTGTCTTCAATCTACTTCACTGTCAGTAC-GGAAAGAC
* * * *
37484630 AAGATTTGTTATGTTCAGTCTGCTTCGCTGTCAATACAGAAAGACATGGC
128 AAGATCTGTTATATTCAATCTGCTTCGCTGTCAATACAGAAAGACAAGGC
* *
37484680 TGGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTATCTTCA
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCA
37484736 CTGATCTGTT
Statistics
Matches: 203, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
178 198 0.98
179 4 0.02
180 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (177 bp):
TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
GCTACAAACCAAAAAGGCAAGACTGGTGTCTTCAATCTACTTCACTGTCAGTACGGAAAGACAAG
ATCTGTTATATTCAATCTGCTTCGCTGTCAATACAGAAAGACAAGGC
Found at i:37489909 original size:70 final size:69
Alignment explanation
Indices: 37489792--37490005 Score: 279
Period size: 71 Copynumber: 3.1 Consensus size: 69
37489782 TATCTCAGAT
* * *
37489792 TTAAAAAAATGGATCATGCCCAGTAAGTTAGGACACGATAT-TCTCTTAATTCCCGAGATCGTTT
1 TTAAAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCT-TCTTAATTCCAGAGATCGTTT
37489856 AAAAC
65 AAAAC
**
37489861 TTGAGAAAAAA-GGATCATGCCCAGTAAGTTAGGACACGGCCTCTTCTTAATTCCAGAGATCGTT
1 TT-A-AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCG-T
*
37489925 TTAAACC
63 TTAAAAC
* * * *
37489932 TATAAAAAAAGGGATCATGCCCAGTAAATTAGGACATGATCTCTTCTTAATACCTGAGATCGTTT
1 T-TAAAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTT
37489997 AAAAC
65 AAAAC
37490002 TTAA
1 TTAA
37490006 GTTTGAAAAG
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
69 5 0.04
70 60 0.47
71 61 0.48
72 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (69 bp):
TTAAAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTA
AAAC
Found at i:37490619 original size:21 final size:21
Alignment explanation
Indices: 37490579--37490619 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37490569 CATGTGTATG
* *
37490579 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
37490600 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
37490620 TTTTGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:37493004 original size:9 final size:9
Alignment explanation
Indices: 37492987--37493019 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
37492977 AAATCGTGAT
*
37492987 AGTTTGATA
1 AGTTCGATA
37492996 AGTTCGATA
1 AGTTCGATA
37493005 AGTTCGATA
1 AGTTCGATA
37493014 AGTTCG
1 AGTTCG
37493020 GTTAAGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.36
Consensus pattern (9 bp):
AGTTCGATA
Found at i:37499767 original size:27 final size:26
Alignment explanation
Indices: 37499735--37500490 Score: 789
Period size: 27 Copynumber: 28.3 Consensus size: 26
37499725 AGAGGTCGAT
* *
37499735 AAATGACTGAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
37499762 AAATGACCGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
37499788 AAATGACCAAAATATCCTCATCGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37499815 GAATGACTGAAATACACCCATTGGGTA
1 AAATGACCGAAATAC-CCCATAGGGTA
* * *
37499842 GACTGACCGAAATATCCCCCACAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
* *
37499870 AAATGACCGAAATACCCCCACAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* *
37499897 CAATGA-CGAAAATACCCCTATTGGGTA
1 AAATGACCG-AAATACCCC-ATAGGGTA
*
37499924 GAAAT-ACCAAAATACCCCCATAGGGTA
1 -AAATGACCGAAATA-CCCCATAGGGTA
*
37499951 GAATGACCGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
37499977 AATTGACCGAAATATCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
*
37500003 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37500030 AAATTACCGAAATATACCCATAGGATA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37500057 AAATGACCAAAATACCCTATAGAGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
37500083 GAATGACCAAAATATCTCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
37500110 AAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
* * * *
37500137 AAATAATCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
**
37500164 AAATGACAAAAATA-CCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
37500189 AAATGACCAAAATATGCCCCGTAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
*
37500217 AAATAACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* *
37500244 GAATGACCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* *
37500271 GAATGACCGAAATACCCCATAAGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* ** *
37500297 AAATAACTTAAATACCCTCATAAGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* *
37500324 AAATGACCGAAATAACCCTATAGGATA
1 AAATGACCGAAAT-ACCCCATAGGGTA
*
37500351 AAATGACCGAAATACCCTATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
*
37500377 GAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
*
37500404 AAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* *
37500431 AAATAACCGAAATACCCCCATACGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
37500458 AAATGACCGAAATACCCCATGGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
37500484 AAATGAC
1 AAATGAC
37500491 TATTATACCC
Statistics
Matches: 619, Mismatches: 88, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.03
26 174 0.28
27 365 0.59
28 58 0.09
29 1 0.00
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (26 bp):
AAATGACCGAAATACCCCATAGGGTA
Found at i:37500096 original size:80 final size:80
Alignment explanation
Indices: 37499735--37500490 Score: 794
Period size: 80 Copynumber: 9.4 Consensus size: 80
37499725 AGAGGTCGAT
* * *
37499735 AAATGACTGAAATACCCTCGTAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCAAA
1 AAATGACCGAAATACCCT-ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
* *
37499799 ATATCCTCATCGGGTA
65 ATATCCCCATAGGGTA
* * * * * * *
37499815 GAATGACTGAAATACACCCATTGGGTAGACTGACCGAAATATCCCCCACAGGGTAAAATGACCGA
1 AAATGACCGAAATAC-CCTATAGGGTAAAATGACCGAAATA-CCCCCATAGGGTAAAATGACCGA
* * *
37499880 AATACCCCCACAAGGTA
64 AATATCCCCATAGGGTA
* * * *
37499897 CAATGA-CGAAAATACCCCTATTGGGTAGAAAT-ACCAAAATACCCCCATAGGGTAGAATGACCG
1 AAATGACCG-AAATA-CCCTATAGGGTA-AAATGACCGAAATACCCCCATAGGGTAAAATGACCG
37499960 AAATA-CCCCATAGGGTA
63 AAATATCCCCATAGGGTA
* * *
37499977 AATTGACCGAAATATCCC-ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATTACCGAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
* *
37500041 ATATACCCATAGGATA
65 ATATCCCCATAGGGTA
* * * * * *
37500057 AAATGACCAAAATACCCTATAGAGTAGAATGACCAAAATATCTCCATAGGGTAAAATGACCGAAA
1 AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAAA
37500122 TA-CCCCTATAGGGTA
66 TATCCCC-ATAGGGTA
* * * ** *
37500137 AAATAATCAAAATACCCTTATAGGGTAAAATGACAAAAATA--CCCATAGGGTAAAATGACCAAA
1 AAATGACCGAAATACCC-TATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
*
37500200 ATATGCCCCGTAGGGTA
65 ATAT-CCCCATAGGGTA
* * * * *
37500217 AAATAACCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCCATAAGGTAGAATGACCGAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
*
37500282 ATA-CCCCATAAGGTA
65 ATATCCCCATAGGGTA
* ** * * * *
37500297 AAATAACTTAAATACCCTCATAAGGTAAAATGACCGAAATAACCCTATAGGATAAAATGACCGAA
1 AAATGACCGAAATACCCT-ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
*
37500362 ATA-CCCTATAGGGTA
65 ATATCCCCATAGGGTA
* ** *
37500377 GAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTTATAGGGTAAAATAACCGAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAA
* *
37500442 ATACCCCCATACGGTA
65 ATATCCCCATAGGGTA
* *
37500458 AAATGACCGAAATACCCCATGGGGTAAAATGAC
1 AAATGACCGAAATACCCTATAGGGTAAAATGAC
37500491 TATTATACCC
Statistics
Matches: 567, Mismatches: 89, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
78 4 0.01
79 71 0.13
80 323 0.57
81 84 0.15
82 82 0.14
83 3 0.01
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (80 bp):
AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAAA
TATCCCCATAGGGTA
Found at i:37500517 original size:107 final size:105
Alignment explanation
Indices: 37499736--37500490 Score: 823
Period size: 107 Copynumber: 7.1 Consensus size: 105
37499726 GAGGTCGATA
* * *
37499736 AATGACTGAAATACCCTCGTAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCAAAAT
1 AATGACCGAAATACCC-CATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAAT
* * * * * *
37499801 ATCCTCATCGGGTAGAATGACTGAAATACACCCATTGGGTAG
65 ACCCCCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTAG
* * * * *
37499843 ACTGACCGAAATATCCCCCACAGGGTAAAATGACCGAAATACCCCCACAAGGTACAATGA-CGAA
1 AATGACCGAAATA--CCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCG-A
* * *
37499907 AATACCCCTATTGGGTAGAAAT-ACCAAAATACCCCCATAGGGTAG
62 AATACCCCCATAGGGTA-AAATGACCGAAATA-CCCCATAGGGTAG
* * *
37499952 AATGACCGAAATACCCCATAGGGTAAATTGACCGAAATATCCCATAGGGTAAAATGACTGAAATA
1 AATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATA
* * * *
37500017 CCCCCATAGGGTAAAATTACCGAAATATACCCATAGGATAA
66 CCCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAG
* * * * * *
37500058 AATGACCAAAATACCCTATAGAGTAGAATGACCAAAATATCTCCATAGGGTAAAATGACCGAAAT
1 AATGACCGAAATACCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAAT
* * * * * *
37500123 ACCCCTATAGGGTAAAATAATCAAAATACCCTTATAGGGTAA
65 ACCCCCATAGGGTAAAATGACCGAAATACCC-CATAGGGTAG
** * * *
37500165 AATGACAAAAATA-CCCATAGGGTAAAATGACCAAAATATGCCCCGTAGGGTAAAATAACCGAAA
1 AATGACCGAAATACCCCATAGGGTAAAATGACCGAAATA--CCCCATAGGGTAAAATGACCGAAA
* *
37500229 TACCCCCATAGGGTAGAATGACCGAAATACCCCCATAAGGTAG
64 TACCCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAG
* * ** *
37500272 AATGACCGAAATACCCCATAAGGTAAAATAACTTAAATACCCTCATAAGGTAAAATGACCGAAAT
1 AATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGACCGAAAT
* * * *
37500337 AACCCTATAGGATAAAATGACCGAAATACCCTATAGGGTAG
65 ACCCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTAG
* *
37500378 AATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAA
1 AATGACCGAAATACCCC-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGACCGAAA
* * *
37500443 TACCCCCATACGGTAAAATGACCGAAATACCCCATGGGGTAA
64 TACCCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTAG
37500485 AATGAC
1 AATGAC
37500491 TATTATACCC
Statistics
Matches: 541, Mismatches: 92, Indels: 30
0.82 0.14 0.05
Matches are distributed among these distances:
105 4 0.01
106 136 0.25
107 289 0.53
108 46 0.09
109 62 0.11
110 4 0.01
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (105 bp):
AATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATA
CCCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTAG
Found at i:37502617 original size:18 final size:17
Alignment explanation
Indices: 37502579--37502693 Score: 52
Period size: 18 Copynumber: 6.2 Consensus size: 17
37502569 CCAAACTTAC
* *
37502579 TTTCTTTTTCAATTTTCT
1 TTTCTTTCTCAATTCT-T
37502597 TTTCTTTCTCACATTCTT
1 TTTCTTTCTCA-ATTCTT
**
37502615 TTTCGCTCTCAATCTCTT
1 TTTCTTTCTCAAT-TCTT
*
37502633 TTTGTTTTCTTTCATTATT-TT
1 TTT-CTTTC--TCA--ATTCTT
* *
37502654 TTTCTTTTTCAATATATT
1 TTTCTTTCTCAAT-TCTT
* *
37502672 TTTCTTTTTCACATGCTT
1 TTTCTTTCTCA-ATTCTT
37502690 TTTC
1 TTTC
37502694 GATTTCATTA
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
16 2 0.03
17 3 0.04
18 49 0.64
19 8 0.11
20 3 0.04
21 8 0.11
22 1 0.01
23 2 0.03
ACGTcount: A:0.12, C:0.20, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTCTTTCTCAATTCTT
Found at i:37505068 original size:30 final size:30
Alignment explanation
Indices: 37505029--37505107 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
37505019 ATAAAATAGC
*
37505029 ATCAAGCTCAATGAGCTAAGATT-GAGTTGA
1 ATCAAGCTCAATGAGCTAA-ATTCGAGCTGA
* *
37505059 ATTAAGCTCAATGAACTGAAATTCGAGCTGA
1 ATCAAGCTCAATGAGCT-AAATTCGAGCTGA
* *
37505090 ATCAAGCTCCATAAGCTA
1 ATCAAGCTCAATGAGCTA
37505108 GGATCTAGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 19 0.47
31 21 0.52
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (30 bp):
ATCAAGCTCAATGAGCTAAATTCGAGCTGA
Found at i:37505097 original size:31 final size:30
Alignment explanation
Indices: 37505029--37505098 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
37505019 ATAAAATAGC
* *
37505029 ATCAAGCTCAATGAGCTAAGATTGAGTTGA
1 ATCAAGCTCAATGAACTAAGATTGAGCTGA
*
37505059 ATTAAGCTCAATGAACTGAA-ATTCGAGCTGA
1 ATCAAGCTCAATGAACT-AAGATT-GAGCTGA
37505090 ATCAAGCTC
1 ATCAAGCTC
37505099 CATAAGCTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (30 bp):
ATCAAGCTCAATGAACTAAGATTGAGCTGA
Found at i:37507064 original size:27 final size:27
Alignment explanation
Indices: 37507028--37507470 Score: 398
Period size: 27 Copynumber: 16.7 Consensus size: 27
37507018 TGAGGTCAAT
* * *
37507028 AAATGACCAAAACACCCCCGTAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
37507055 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* ** **
37507082 GAATGATTGAAATACCCTAATAAGGG-A
1 AAATGACCGAAATACCCCCAT-AGGGTA
* **
37507109 GAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
37507136 AAATGACCTAAATACCCCTATATGTTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37507163 GAATGACCGAAATACCCCCATATGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
37507190 GAATGACTGAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37507217 AATTGACCGAAATA-CCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* **
37507243 AATTGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37507270 AAATGACTGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37507297 AAATGATCGAAATACCCCAATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* **
37507324 GAATGACCGAAATAATCCCATAGGGT-
1 AAATGACCGAAATACCCCCATAGGGTA
**
37507350 AAAT----GAAATACTACCATAGGGT-
1 AAATGACCGAAATACCCCCATAGGGTA
*
37507372 AAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* ** *
37507399 AAATAACAAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
37507426 AAATGATCAAAATACCCCCATACGGTC
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37507453 AAATGTCTGAAATACCCC
1 AAATGACCGAAATACCCC
37507471 ATATTCATTG
Statistics
Matches: 346, Mismatches: 62, Indels: 16
0.82 0.15 0.04
Matches are distributed among these distances:
22 20 0.06
26 45 0.13
27 277 0.80
28 4 0.01
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:37507366 original size:22 final size:22
Alignment explanation
Indices: 37507332--37507377 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
37507322 TAGAATGACC
*
37507332 GAAATAATCCCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
*
37507354 GAAATACTACCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
37507376 GA
1 GA
37507378 CCGAAATACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.22
Consensus pattern (22 bp):
GAAATAATACCATAGGGTAAAT
Found at i:37519246 original size:42 final size:42
Alignment explanation
Indices: 37519187--37519273 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
37519177 TAGGTTTTCA
37519187 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
1 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
37519229 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
1 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
37519271 TTT
1 TTT
37519274 CTTGTTTCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.16, C:0.16, G:0.09, T:0.59
Consensus pattern (42 bp):
TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
Found at i:37528055 original size:21 final size:21
Alignment explanation
Indices: 37528029--37528091 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
37528019 TTGGTATTTG
37528029 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37528050 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37528071 GGTATTTGGTAC-AAATTGGTA
1 GG-AATTGGTACGAAA-TGGTA
37528092 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37528060 original size:11 final size:11
Alignment explanation
Indices: 37528040--37528072 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37528030 GAATTGGTAC
37528040 GAAATGGTATG
1 GAAATGGTATG
*
37528051 GAATTGGTAT-
1 GAAATGGTATG
37528061 GAAATGGTATG
1 GAAATGGTATG
37528072 G
1 G
37528073 TATTTGGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (11 bp):
GAAATGGTATG
Found at i:37529182 original size:10 final size:10
Alignment explanation
Indices: 37529167--37529208 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37529157 TTTGCAAGTT
37529167 TTGAGCTAAA
1 TTGAGCTAAA
* *
37529177 TTGAGCTGAT
1 TTGAGCTAAA
*
37529187 TTGAGCT-TA
1 TTGAGCTAAA
37529196 TTGAGCTAAA
1 TTGAGCTAAA
37529206 TTG
1 TTG
37529209 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37532168 original size:14 final size:14
Alignment explanation
Indices: 37532138--37532167 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37532128 CAATTTTTCA
37532138 TTCACTTTTTCTTT
1 TTCACTTTTTCTTT
37532152 TTCATCTTTTTCTTT
1 TTCA-CTTTTTCTTT
37532167 T
1 T
37532168 CTCGCTCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCACTTTTTCTTT
Found at i:37532212 original size:18 final size:19
Alignment explanation
Indices: 37532189--37532231 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
37532179 TTCATTCTCT
*
37532189 TTTTTTGAATTTTC-TTTC
1 TTTTTTCAATTTTCTTTTC
*
37532207 TTTTTTCATTTTTCTTTTC
1 TTTTTTCAATTTTCTTTTC
37532226 TTTTTT
1 TTTTTT
37532232 ATTTTCGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTTTCAATTTTCTTTTC
Found at i:37532235 original size:18 final size:19
Alignment explanation
Indices: 37532198--37532251 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
37532188 TTTTTTTGAA
37532198 TTTTC-TTTCTTTTTTCAT
1 TTTTCTTTTCTTTTTTCAT
37532216 TTTTCTTTTCTTTTTT-AT
1 TTTTCTTTTCTTTTTTCAT
37532234 TTTCGCTCTTTTCTTTTT
1 TTT---TCTTTTCTTTTT
37532252 CTCTCATTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.31
19 10 0.31
21 12 0.38
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTCTTTTCTTTTTTCAT
Found at i:37534484 original size:17 final size:17
Alignment explanation
Indices: 37534459--37534503 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
37534449 AACCGTATAC
37534459 AATTTTTTTTTCTTTCAA
1 AATTTTTTTTTCTTTC-A
*
37534477 AATTTTTTTTTCTTTCG
1 AATTTTTTTTTCTTTCA
37534494 AATTTTTTTT
1 AATTTTTTTT
37534504 GTTTTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (17 bp):
AATTTTTTTTTCTTTCA
Found at i:37534516 original size:29 final size:28
Alignment explanation
Indices: 37534479--37534533 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
37534469 TCTTTCAAAA
*
37534479 TTTTTTTTTCTTTCGAATTTTTTTTGTT
1 TTTTTTTTTCTTTCAAATTTTTTTTGTT
*
37534507 TTTTTGTTTTTTTTCAAATTTTTTTTG
1 TTTTT-TTTTCTTTCAAATTTTTTTTG
37534534 AACTCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.09, C:0.05, G:0.07, T:0.78
Consensus pattern (28 bp):
TTTTTTTTTCTTTCAAATTTTTTTTGTT
Found at i:37534545 original size:29 final size:29
Alignment explanation
Indices: 37534480--37534546 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
37534470 CTTTCAAAAT
* * *
37534480 TTTTTTTTCTTTCGAATTTTTTTTG-TTT
1 TTTTTTTTCTTTCAAATTTTTTTTGACTC
*
37534508 TTTTGTTTTTTTTCAAATTTTTTTTGAACTC
1 TTTT-TTTTCTTTCAAATTTTTTTTG-ACTC
37534539 TTTTTTTT
1 TTTTTTTT
37534547 ACGTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.12
29 19 0.59
30 4 0.12
31 5 0.16
ACGTcount: A:0.10, C:0.07, G:0.06, T:0.76
Consensus pattern (29 bp):
TTTTTTTTCTTTCAAATTTTTTTTGACTC
Found at i:37534871 original size:21 final size:21
Alignment explanation
Indices: 37534845--37534907 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
37534835 TTGGTATTTG
37534845 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37534866 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37534887 GGTATTTGGTAC-AAATTGGTA
1 GG-AATTGGTACGAAA-TGGTA
37534908 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37534876 original size:11 final size:11
Alignment explanation
Indices: 37534856--37534888 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37534846 GAATTGGTAC
37534856 GAAATGGTATG
1 GAAATGGTATG
*
37534867 GAATTGGTAT-
1 GAAATGGTATG
37534877 GAAATGGTATG
1 GAAATGGTATG
37534888 G
1 G
37534889 TATTTGGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (11 bp):
GAAATGGTATG
Found at i:37536001 original size:10 final size:10
Alignment explanation
Indices: 37535986--37536027 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37535976 TTTGCAAGTT
37535986 TTGAGCTAAA
1 TTGAGCTAAA
* *
37535996 TTGAGCTGAT
1 TTGAGCTAAA
*
37536006 TTGAGCT-CA
1 TTGAGCTAAA
37536015 TTGAGCTAAA
1 TTGAGCTAAA
37536025 TTG
1 TTG
37536028 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37538791 original size:39 final size:38
Alignment explanation
Indices: 37538748--37538858 Score: 107
Period size: 39 Copynumber: 2.9 Consensus size: 38
37538738 TTAAAACATG
* * * *
37538748 TATTAAAGATGTCCTAAACTATGACATAATTAAAACCCT
1 TATTAATGATGT-CTAAATTATGACATAATTAAAAACCA
* * * * *
37538787 TATTAATGTTGTTTAGATTATGAAATAATTAAAAAATCA
1 TATTAATGATGTCTAAATTATGACATAATT-AAAAACCA
37538826 TATTAATGATGT-TCAAATTATGACATAATTAAA
1 TATTAATGATGTCT-AAATTATGACATAATTAAA
37538859 GAGTCAAACT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
38 18 0.31
39 40 0.69
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (38 bp):
TATTAATGATGTCTAAATTATGACATAATTAAAAACCA
Found at i:37539771 original size:52 final size:51
Alignment explanation
Indices: 37539642--37539773 Score: 142
Period size: 50 Copynumber: 2.6 Consensus size: 51
37539632 ATGTGTTTTG
* * * *
37539642 CATTTAATAAAGTCATGCATTATGTAACTCTCATGCTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGCTAATTAAGTTTGCAT
* * * * *
37539693 CA-CAAATTATA-ACATGCATTATGTAACTCCCATGTTAATTAAATTTTGCCT
1 CATTAAATTA-AGTCATGCATTATGTAACTCCCATGCTAATT-AAGTTTGCAT
*
37539744 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
37539774 ATTTGTTCAT
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
50 29 0.45
51 14 0.22
52 22 0.34
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGCTAATTAAGTTTGCAT
Found at i:37540427 original size:18 final size:18
Alignment explanation
Indices: 37540390--37540428 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37540380 ATTGAAAAGA
*
37540390 AAACTCAAAGAGAATTTT
1 AAACTCAAAGAGAATGTT
37540408 AAACTCAAAAGAGAA-GTT
1 AAACTC-AAAGAGAATGTT
37540426 AAA
1 AAA
37540429 TAATAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.10, G:0.13, T:0.21
Consensus pattern (18 bp):
AAACTCAAAGAGAATGTT
Found at i:37541692 original size:36 final size:36
Alignment explanation
Indices: 37541634--37541703 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
37541624 GAGGTTCAAG
* * *
37541634 GAAGCCATTACGGGTCTCATTGATCGAGTTTGGGGA
1 GAAGCCATTACGGGGCTCATTGATCAAGCTTGGGGA
* * *
37541670 GAAGCTATTATGGGGCTTATTGATCAAGCTTGGG
1 GAAGCCATTACGGGGCTCATTGATCAAGCTTGGG
37541704 TATGCACTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (36 bp):
GAAGCCATTACGGGGCTCATTGATCAAGCTTGGGGA
Found at i:37547694 original size:17 final size:18
Alignment explanation
Indices: 37547672--37547719 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
37547662 TCTTTCTGAG
37547672 TTCATTTATCTTT-CTTT
1 TTCATTTATCTTTACTTT
*
37547689 TTCATTTACCTTTACTTT
1 TTCATTTATCTTTACTTT
*
37547707 TTCATTTTTCTTT
1 TTCATTTATCTTT
37547720 TCTTGATCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (18 bp):
TTCATTTATCTTTACTTT
Found at i:37547708 original size:18 final size:17
Alignment explanation
Indices: 37547672--37547713 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
37547662 TCTTTCTGAG
*
37547672 TTCATTTATCTTTCTTT
1 TTCATTTACCTTTCTTT
37547689 TTCATTTACCTTTACTTT
1 TTCATTTACCTTT-CTTT
37547707 TTCATTT
1 TTCATTT
37547714 TTCTTTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCATTTACCTTTCTTT
Found at i:37548713 original size:16 final size:16
Alignment explanation
Indices: 37548679--37548713 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37548669 ATACACCAAC
*
37548679 TTTTTTATATATTGAT
1 TTTTTTATATATTCAT
37548695 TTTTTTATATATTC-T
1 TTTTTTATATATTCAT
37548710 TTTT
1 TTTT
37548714 CTCGGGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTTATATATTCAT
Found at i:37549977 original size:63 final size:59
Alignment explanation
Indices: 37549909--37550030 Score: 147
Period size: 59 Copynumber: 2.0 Consensus size: 59
37549899 TATTAATGCG
*
37549909 GTACAAACG-AAGACACCATTAATAAACTTAGAACAACTAAACAATCAGACATGTAATAATGTT
1 GTACAAA-GTAAGACACAATTAATAAACTT--AACAA--AAACAATCAGACATGTAATAATGTT
* * * *
37549972 GTACAAAGTAGGACACAATTAATAGACTTAACTAAAATAATCAGACATGTAATAATGTT
1 GTACAAAGTAAGACACAATTAATAAACTTAACAAAAACAATCAGACATGTAATAATGTT
37550031 ATATGAAATC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
59 24 0.45
61 4 0.08
62 1 0.02
63 24 0.45
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (59 bp):
GTACAAAGTAAGACACAATTAATAAACTTAACAAAAACAATCAGACATGTAATAATGTT
Found at i:37556220 original size:12 final size:12
Alignment explanation
Indices: 37556203--37556235 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
37556193 GATACCCCAT
37556203 TCTATCTTTCCA
1 TCTATCTTTCCA
37556215 TCTATCTTTCCA
1 TCTATCTTTCCA
37556227 TCTAT-TTTC
1 TCTATCTTTC
37556236 TTTATGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.55
Consensus pattern (12 bp):
TCTATCTTTCCA
Found at i:37560347 original size:35 final size:35
Alignment explanation
Indices: 37560300--37560368 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
37560290 TTAATTAATC
* *
37560300 AGCTTTGACAATTGAAGTCCCCGAACAGTCATTGG
1 AGCTTTGACAATTAAAGTCCCCGAACAGCCATTGG
* * *
37560335 AGCTTTGTCAATTAAAGTTCTCGAACAGCCATTG
1 AGCTTTGACAATTAAAGTCCCCGAACAGCCATTG
37560369 AGGTGGACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (35 bp):
AGCTTTGACAATTAAAGTCCCCGAACAGCCATTGG
Found at i:37562797 original size:18 final size:18
Alignment explanation
Indices: 37562774--37562809 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37562764 TCACTTTCTT
*
37562774 TTTCTTTATCATTTTTTC
1 TTTCTTGATCATTTTTTC
37562792 TTTCTTGATCATTTTTTC
1 TTTCTTGATCATTTTTTC
37562810 CCTTACTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTCTTGATCATTTTTTC
Found at i:37569096 original size:27 final size:27
Alignment explanation
Indices: 37569055--37569275 Score: 286
Period size: 27 Copynumber: 8.2 Consensus size: 27
37569045 ACTTGATGGC
* * *
37569055 TAAAATTATCAAAATACCCTCAAAAGG
1 TAAAATTACCGAAATACCCTCAAAGGG
37569082 TAAAATTACCGAAATACCCTCGAAA-GG
1 TAAAATTACCGAAATACCCTC-AAAGGG
* **
37569109 TAAAAGTACC-AAATACCCTTGAAGGG
1 TAAAATTACCGAAATACCCTCAAAGGG
*
37569135 TAAAATTATCGAAATACCCTCAAAGGG
1 TAAAATTACCGAAATACCCTCAAAGGG
37569162 TAAAATTACCGAAATACCCAT-AAAGGG
1 TAAAATTACCGAAATACCC-TCAAAGGG
* *
37569189 TAAAATTACCAAAATACCCTCGAAGGG
1 TAAAATTACCGAAATACCCTCAAAGGG
*
37569216 TAAAATTACCGAAATACCCTGAAAGGG
1 TAAAATTACCGAAATACCCTCAAAGGG
* * *
37569243 TAAAATTACCAAAATACCCCCGAAGGG
1 TAAAATTACCGAAATACCCTCAAAGGG
37569270 TAAAAT
1 TAAAAT
37569276 AACTGTTATA
Statistics
Matches: 170, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.01
26 20 0.12
27 144 0.85
28 4 0.02
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.19
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCAAAGGG
Found at i:37573394 original size:25 final size:25
Alignment explanation
Indices: 37573352--37573410 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
37573342 TTGGGTTGTG
*
37573352 TGCTGACGCAAGAAGGTAAGGTGAT
1 TGCTGATGCAAGAAGGTAAGGTGAT
* *
37573377 TGCTGATGCAGGAGGGTAAGGTGAT
1 TGCTGATGCAAGAAGGTAAGGTGAT
*
37573402 TGCTTATGC
1 TGCTGATGC
37573411 GTCTCGTCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.37, T:0.25
Consensus pattern (25 bp):
TGCTGATGCAAGAAGGTAAGGTGAT
Found at i:37577822 original size:14 final size:13
Alignment explanation
Indices: 37577803--37577836 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
37577793 TGCTGATTTC
37577803 TTTTTTTCACAAAT
1 TTTTTTTCAC-AAT
37577817 TTTTTTTCACAAT
1 TTTTTTTCACAAT
37577830 TTTTTTT
1 TTTTTTT
37577837 AGATTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTTTCACAAT
Found at i:37587759 original size:118 final size:120
Alignment explanation
Indices: 37587576--37587799 Score: 296
Period size: 118 Copynumber: 1.9 Consensus size: 120
37587566 GCTCCTCGTT
*
37587576 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37587641 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
37587696 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
37587757 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
37587800 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 10 0.11
120 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37587799 original size:40 final size:40
Alignment explanation
Indices: 37587576--37587799 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
37587566 GCTCCTCGTT
* *
37587576 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37587616 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37587656 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37587696 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37587734 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37587775 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37587800 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 34 0.21
39 2 0.01
40 117 0.71
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37602396 original size:15 final size:17
Alignment explanation
Indices: 37602372--37602403 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
37602362 ATATATTAAA
37602372 CTAAATGC-AATTATCC
1 CTAAATGCAAATTATCC
37602388 CTAAA-GCAAATTATCC
1 CTAAATGCAAATTATCC
37602404 TAAGTATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.13
16 13 0.87
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (17 bp):
CTAAATGCAAATTATCC
Found at i:37608085 original size:19 final size:20
Alignment explanation
Indices: 37608037--37608085 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
37608027 ATTCATCATG
37608037 TTAA-TATTTTTAACATAAT
1 TTAATTATTTTTAACATAAT
37608056 TTAATTA-TTTTATA-AT-AT
1 TTAATTATTTTTA-ACATAAT
37608074 TTAATTATTTTT
1 TTAATTATTTTT
37608086 TGACAAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 9 0.33
19 15 0.56
20 3 0.11
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAATTATTTTTAACATAAT
Found at i:37610052 original size:899 final size:900
Alignment explanation
Indices: 37606768--37611258 Score: 7865
Period size: 898 Copynumber: 5.0 Consensus size: 900
37606758 AGCTTATGTA
* * * * *
37606768 GTCAGATAAAATGCTGATTTGGGTCAGAATATGGACGGTTCTGGGCAGCCCAATTGGTGGCTGGT
1 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
* *
37606833 TCGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAATTGGACCC--TTTTTCCATAATTAATTA
66 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
*
37606896 ATAATAATTTATTTAGCCCTAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
131 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
* * * * * * * **
37606961 ACACATTTTTTGACCATCTTACGCTAGAAATAAATTTTCCTCGATGCTTCAAATTACTTCTCAAT
196 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTCGGT
* * *
37607026 TTTATTCTTCGAGCATTGTCTGCCGAGCCAATTTTCGCCCTTTGTGCGAATCTGTTGAAAATAGT
261 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTT-TGCGAATCTGTCGAAAATAGT
37607091 CAAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAAT
325 CAAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAAT
* * * *
37607156 TTAATTATTTTATAATATTTATTTATTTTTCGACAAGTATTTAATTGAAATAGCATGATTTTAAG
390 TTAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAG
*
37607221 TTAAAAAGGGCATGTAAAACCACATAAGTTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGC
455 TTAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGC
* ** * * *
37607286 TCGTCCTTAGTAATGCAAAAATTTGAAAAGAATTTTCAT-GGAAACACTTTTTGAAAAACTCCTT
520 TCATCCCAAGCAATGCACAAATTTGAAAAGAATTTTC-TCGGAAACACTTTTTGAAAAACTTCTT
* *
37607350 TAGAACAACATTCTTCCCAAAATCATGAAATCAATATACTTATGCTCAAAAACAAGAAATTTGAT
584 CAGAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGAT
* * * * *
37607415 AATTATCCTACTCAAGTATATATAT-CTTCAAATTAATCTCAACAATTACAACAATAGCAAAATT
649 AATTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATT
*
37607479 AGACTAAATGTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAA
714 AGACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAA
*
37607544 AATTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAATAGAGCAATTTCTCTCCA
779 AATTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCA
* * **
37607609 CCAATGTAGGTAACATTGAAATTTTGAATCAATAGGTCTTTAACAAGGTTGTAATAT
844 CCAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
* * * *
37607666 GCCAGCTAAAATGCTGATTTGGGTCGGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
1 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
* *
37607731 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTAGACCCTTTTTTTCCATAAATAATTA
66 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
*
37607796 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAGC
131 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
* ** * * *
37607861 ACACATTTTTGGACCATCTTAGGCAGGAAATAAATTTTCCTCT-ATGCTTCGAACTGTTTCTCGG
196 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCT-TGATGCTTCAAATTGCTTCTCGG
* * *
37607925 TTTTATTCTTCGAGCATTGTCTACTAAGCCAATTTTCTCCCTTTGTGCGAATCTGTTGAAAATAG
260 TTTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTT-TGCGAATCTGTCGAAAATAG
*
37607990 TCAAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTAATATTTTTAACATAA
324 TCAAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAA
37608055 TTTAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAA
389 TTTAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAA
*
37608120 GTTAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCTCAAACTTAATTCATTG
454 GTTAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTG
*
37608185 CTCATCCCAAGCAATGCACAACTTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTT
519 CTCATCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTT
37608250 CAGAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGAT
584 CAGAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGAT
37608315 AATTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATT
649 AATTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATT
37608380 AGACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAA
714 AGACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAA
*
37608445 AATTAAACTGCAATCATTAAGCTTAACTGATATCTTCATATGTTGAACAGAGCAATTTCTCTCCA
779 AATTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCA
37608510 CCAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
844 CCAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
* *
37608567 GTCAACTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGTTGGT
1 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
37608632 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCC-TTTTTTCCATAATTAATTA
66 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
37608696 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
131 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
*
37608761 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTTGGT
196 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTCGGT
*
37608826 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTTTGCGAATCTATCGAAAATAGTC
261 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTTTGCGAATCTGTCGAAAATAGTC
37608891 AAAATTAATCAAAATTAACTATAAAATTAATT-AAATTCATCATGTTCATATTTTTAACATAATT
326 AAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAATT
37608955 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAGT
391 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAGT
* *
37609020 TAAAAAGGGCACGTAAAACCACATAAATTTTCGTGTTTCCACACCCTCAAACTTAATTCATTGCT
456 TAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGCT
* *
37609085 CATCCCAAGCAATGCACAACTTTGAAAAGAATTTTCTCAGAAACACTTTTTGAAAAACTTCTTCA
521 CATCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTTCA
37609150 GAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATAA
586 GAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATAA
37609215 TTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATTAG
651 TTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATTAG
37609280 ACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAAAA
716 ACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAAAA
37609345 TTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCACC
781 TTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCACC
37609410 AATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
846 AATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
*
37609465 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCTCAATTGGTGGCTGGT
1 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
37609530 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
66 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
*
37609595 ATAATAATTTAGTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
131 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
* *
37609660 AAACATTTTTGGACCATATTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTTGGT
196 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTCGGT
* *
37609725 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCATTTTGCGAATCTATCGAAAATAGTC
261 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTTTGCGAATCTGTCGAAAATAGTC
37609790 AAAATTAATCAAAATTAACTATAAAATTAATT-AAATTCATCATGTTCATATTTTTAACATAATT
326 AAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAATT
* *
37609854 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTGAATCGAAATAGCATGATTTTATGT
391 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAGT
*
37609919 TACAAAA-GGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTTATTCATTGC
456 TA-AAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGC
*
37609983 TCACCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTTC
520 TCATCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTTC
37610048 AGAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATA
585 AGAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATA
37610113 ATTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATTA
650 ATTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATTA
37610178 GACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAAA
715 GACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAAA
*
37610243 ATTAAACTACAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCAC
780 ATTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCAC
37610308 CAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
845 CAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
*
37610364 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGTT
1 GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
* *
37610429 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTAGACCCTTTTTTTCCATAATTATTTA
66 TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
37610494 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATT-AAATTAATTATATTATGAATTAAC
131 ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
*
37610558 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTCGATGCTTCAAATTGCTTCTCGGT
196 AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTCGGT
* *
37610623 TTTATTCTTCGAGCATTGTATGCTGAGCCAATTTTCGCCCTTTTGCGAATCTGTCGAAAATAGTC
261 TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTTTGCGAATCTGTCGAAAATAGTC
37610688 AAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAATT
326 AAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAATT
*
37610753 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAACAGCATGATTTTAAGT
391 TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAGT
* * * *
37610818 TACAAAGAGCATGTAAAACCACATAAATTTTCGCGTTTCCACA-CCCCAAACTTTATTCATTGCT
456 TAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGCT
* * * * *
37610882 CGTCCCGAGTAATGCACAAATTTGAAAAGAATTTTCTCGGAAACAGTTTTTGAAAAACTCCTTCA
521 CATCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTTCA
* *
37610947 GAACAACATTCTTCCAAAAATCATGAAATCAATATACTTATGCTCAAAAACAAGAAATTTGATAA
586 GAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATAA
* *
37611012 TTATGCTACTCAAGTATATATGTGGTTCAAATTAA-ACTCTACAATTACTACAATAGAAAAATTA
651 TTATGCTACTCAAGTATATATATGGTTCAAATTAATA-TCAACAATTACTACAATAGAAAAATTA
*
37611076 GACTAAATGTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAAAT-CCTTATTCAA
715 GACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTT-AATCCCTTATTCAA
*
37611140 AATTAAACTGCAATCATTAAGCTTAACTAATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCA
779 AATTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCA
* *
37611205 CTAATATAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAA
844 CCAATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAA
37611259 CGTGGCTGGG
Statistics
Matches: 3455, Mismatches: 126, Indels: 24
0.96 0.03 0.01
Matches are distributed among these distances:
897 1 0.00
898 1306 0.38
899 1123 0.33
900 707 0.20
901 318 0.09
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (900 bp):
GTCAGCTAAAATGTTGATTCGGGTCAGCATATGGACGGTTCAGGGCAGCCCAATTGGTGGCTGGT
TTGGTTCACTAGATTCGGTTCAACCAATGCGGTTCAACTGGACCCTTTTTTTCCATAATTAATTA
ATAATAATTTATTTAGCCCAAATTAAATTGGGAATAAATTAAAATTAATTATATTATGAATTAAC
AAACATTTTTGGACCATCTTAGGTTGGAAATAAATTTTCCTTGATGCTTCAAATTGCTTCTCGGT
TTTATTCTTCGAGCATTGTCTACTGAGCCAATTTTCGCCCTTTTGCGAATCTGTCGAAAATAGTC
AAAATTAATCAAAATTAACTATAAAATTAATTAAAATTCATCATGTTCATATTTTTAACATAATT
TAATTATTTTATAATATTTAATTATTTTTTGACAAGAATTTAATCGAAATAGCATGATTTTAAGT
TAAAAAGGGCATGTAAAACCACATAAATTTTCGTGTTTCCACACCCCCAAACTTAATTCATTGCT
CATCCCAAGCAATGCACAAATTTGAAAAGAATTTTCTCGGAAACACTTTTTGAAAAACTTCTTCA
GAACAACATTCTTCCCAAAATCATGAAATCGATATACTTATGCTCAAAAACAAGAAATTTGATAA
TTATGCTACTCAAGTATATATATGGTTCAAATTAATATCAACAATTACTACAATAGAAAAATTAG
ACTAAATTTTTCTTAATAAAGACATGTTAATCCCTACCAAATTGATTTTAATCCCTTATTCAAAA
TTAAACTGCAATCATTAAGCTTAACTGATGTCTTCATATGTTGAACAGAGCAATTTCTCTCCACC
AATGTAGGTAACATTGGAACTTTGAATCAATAGGTCTTTAACAAGGTTGTAAGGT
Found at i:37621244 original size:14 final size:15
Alignment explanation
Indices: 37621225--37621254 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
37621215 TGGTGGCTGG
37621225 TTCGGTTC-ACTAGA
1 TTCGGTTCAACTAGA
37621239 TTCGGTTCAACTAGA
1 TTCGGTTCAACTAGA
37621254 T
1 T
37621255 CCTTTTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (15 bp):
TTCGGTTCAACTAGA
Found at i:37623192 original size:471 final size:471
Alignment explanation
Indices: 37622310--37623258 Score: 1889
Period size: 471 Copynumber: 2.0 Consensus size: 471
37622300 AAGGGTACCA
37622310 TTTCAAATTGTCACCTACATAAGAATAAAACAAATTAGTGACATTATAAATTATAGGCACAAAAT
1 TTTCAAATTGTCACCTACATAAGAATAAAACAAATTAGTGACATTATAAATTATAGGCACAAAAT
37622375 AACTTTTCGATATCCTATTCAAGAATGGAATACATAAACCAATGCCAGAAAAAAAGTTATAAGTT
66 AACTTTTCGATATCCTATTCAAGAATGGAATACATAAACCAATGCCAGAAAAAAAGTTATAAGTT
37622440 GGCCTTACCTTTTCAGAATTAATCAAAAGCTTCATCGATGGCAACAAACCAGAATCACAAATCAT
131 GGCCTTACCTTTTCAGAATTAATCAAAAGCTTCATCGATGGCAACAAACCAGAATCACAAATCAT
37622505 TCAAAAGTTATAATCTTGGAAAACAAAATTCCATAGCTCAAACCCCTTGAACAATAATATAGAAC
196 TCAAAAGTTATAATCTTGGAAAACAAAATTCCATAGCTCAAACCCCTTGAACAATAATATAGAAC
37622570 AATAATCTTAGGGATCAAAAACAAAGTTTTCTTTTACCATTTCAATCTGGCTTGAAAGTTTCATG
261 AATAATCTTAGGGATCAAAAACAAAGTTTTCTTTTACCATTTCAATCTGGCTTGAAAGTTTCATG
37622635 GCCGACAACATAGAAGGAACATGAAGCAATTGAAAGTTATAATCATGCAAAACATGCTCGAATCC
326 GCCGACAACATAGAAGGAACATGAAGCAATTGAAAGTTATAATCATGCAAAACATGCTCGAATCC
37622700 TTTAAACCATAATATAGTGCAAACTTTGAGATCAAAGATTTGATTTCGACTTTGCAAGTCATCAG
391 TTTAAACCATAATATAGTGCAAACTTTGAGATCAAAGATTTGATTTCGACTTTGCAAGTCATCAG
37622765 AATTCACATGTTCTAT
456 AATTCACATGTTCTAT
37622781 TTTCAAATTGTCACCTACATAAGAATAAAACAAATTAGTGACATTATAAATTATAGGCACAAAAT
1 TTTCAAATTGTCACCTACATAAGAATAAAACAAATTAGTGACATTATAAATTATAGGCACAAAAT
37622846 AACTTTTCGATATCCTATTCAAGAATGGAATACATAAACCAATGCCAGAAAAAAAGTTATAAGTT
66 AACTTTTCGATATCCTATTCAAGAATGGAATACATAAACCAATGCCAGAAAAAAAGTTATAAGTT
37622911 GGCCTTACCTTTTCAGAATTAATCAAAAGCTTCATCGATGGCAACAAACCAGAATCACAAATCAT
131 GGCCTTACCTTTTCAGAATTAATCAAAAGCTTCATCGATGGCAACAAACCAGAATCACAAATCAT
37622976 TCAAAAGTTATAATCTTGGAAAACAAAATTCCATAGCTCAAACCCCTTGAACAATAATATAGAAC
196 TCAAAAGTTATAATCTTGGAAAACAAAATTCCATAGCTCAAACCCCTTGAACAATAATATAGAAC
37623041 AATAATCTTAGGGATCAAAAACAAAGTTTTCTTTTACCATTTCAATCTGGCTTGAAAGTTTCATG
261 AATAATCTTAGGGATCAAAAACAAAGTTTTCTTTTACCATTTCAATCTGGCTTGAAAGTTTCATG
37623106 GCCGACAACATAGAAGGAACATGAAGCAATTGAAAGTTATAATCATGCAAAACATGCTCGAATCC
326 GCCGACAACATAGAAGGAACATGAAGCAATTGAAAGTTATAATCATGCAAAACATGCTCGAATCC
37623171 TTTAAACCATAATATAGTGCAAACTTTGAGATCAAAGATTTGATTTCGACTTTGCAAGTCATCAG
391 TTTAAACCATAATATAGTGCAAACTTTGAGATCAAAGATTTGATTTCGACTTTGCAAGTCATCAG
*
37623236 AATTCACATGTTCTGT
456 AATTCACATGTTCTAT
37623252 TTTCAAA
1 TTTCAAA
37623259 AAAATGATAA
Statistics
Matches: 477, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
471 477 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.29
Consensus pattern (471 bp):
TTTCAAATTGTCACCTACATAAGAATAAAACAAATTAGTGACATTATAAATTATAGGCACAAAAT
AACTTTTCGATATCCTATTCAAGAATGGAATACATAAACCAATGCCAGAAAAAAAGTTATAAGTT
GGCCTTACCTTTTCAGAATTAATCAAAAGCTTCATCGATGGCAACAAACCAGAATCACAAATCAT
TCAAAAGTTATAATCTTGGAAAACAAAATTCCATAGCTCAAACCCCTTGAACAATAATATAGAAC
AATAATCTTAGGGATCAAAAACAAAGTTTTCTTTTACCATTTCAATCTGGCTTGAAAGTTTCATG
GCCGACAACATAGAAGGAACATGAAGCAATTGAAAGTTATAATCATGCAAAACATGCTCGAATCC
TTTAAACCATAATATAGTGCAAACTTTGAGATCAAAGATTTGATTTCGACTTTGCAAGTCATCAG
AATTCACATGTTCTAT
Found at i:37631928 original size:62 final size:62
Alignment explanation
Indices: 37631805--37631935 Score: 158
Period size: 62 Copynumber: 2.1 Consensus size: 62
37631795 AATAGATGCA
* * * * * * *
37631805 AGTGTGTTTCTAGGTCGTGTAACTCACTGTTTGTGGTTTCAGACCACACAGCCAAGGACACG
1 AGTGTGTGTCTAGGCCGTGTAACTAACTATTTGTGGTATAAAACCACACAGCCAAGGACACG
*
37631867 GGTGTGTGTCTAGGCCGTGTAACTAACTATTTGTGGTATAAAACCACAC-GTCC-AGGTACACG
1 AGTGTGTGTCTAGGCCGTGTAACTAACTATTTGTGGTATAAAACCACACAG-CCAAGG-ACACG
37631929 AGTGTGT
1 AGTGTGT
37631936 ACCCACGCCA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
61 4 0.07
62 54 0.93
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (62 bp):
AGTGTGTGTCTAGGCCGTGTAACTAACTATTTGTGGTATAAAACCACACAGCCAAGGACACG
Found at i:37635942 original size:27 final size:27
Alignment explanation
Indices: 37635912--37635968 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
37635902 GACATAATTA
37635912 ACATGTATTAATGTTGTACGATCTAAG
1 ACATGTATTAATGTTGTACGATCTAAG
37635939 ACATGTATTAATGTTGTACGATCTAAG
1 ACATGTATTAATGTTGTACGATCTAAG
37635966 ACA
1 ACA
37635969 CAATTAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (27 bp):
ACATGTATTAATGTTGTACGATCTAAG
Found at i:37637881 original size:27 final size:27
Alignment explanation
Indices: 37637862--37637961 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
37637852 ATATATTAAG
*
37637862 TCCGCACACTCAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAATCAA
37637889 -CTCGCACACTTAGTGCTATATAATCAA
1 TC-CGCACACTTAGTGCTATATAATCAA
* * *
37637916 ACTCGCACACTTAGTGCTATACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA--TCAA
*
37637946 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
37637962 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 24 0.37
28 22 0.34
29 14 0.22
30 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TCCGCACACTTAGTGCTATATAATCAA
Found at i:37637927 original size:28 final size:28
Alignment explanation
Indices: 37637864--37637961 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
37637854 ATATTAAGTC
*
37637864 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37637891 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
37637919 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37637948 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37637962 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 22 0.34
28 24 0.37
29 19 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37638429 original size:14 final size:14
Alignment explanation
Indices: 37638410--37638439 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37638400 TGGGCATACT
37638410 TATGTATATATATA
1 TATGTATATATATA
37638424 TATGTATATATATA
1 TATGTATATATATA
37638438 TA
1 TA
37638440 CTTCGGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:37640516 original size:25 final size:24
Alignment explanation
Indices: 37640465--37640516 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
37640455 AAAACTCTTC
* *
37640465 TAAAAGAAACTCAAGAGAAATTCT
1 TAAAAAAAACTCAAGAGAAATTAT
*
37640489 TAAAAAAAACTCAAAGAGAATTTAT
1 TAAAAAAAACTC-AAGAGAAATTAT
37640514 TAA
1 TAA
37640517 CTCAAAAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (24 bp):
TAAAAAAAACTCAAGAGAAATTAT
Found at i:37641732 original size:32 final size:31
Alignment explanation
Indices: 37641686--37641762 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 31
37641676 TTTGAAGTGT
* ** * *
37641686 CTTTGGTGCGAACACTTGGATTTGGACTGTC
1 CTTTGGTGTGAACACCAGGAATTGGACGGTC
37641717 CTTTGGGTGTGAACACCAGGAATTGGACGGTC
1 CTTT-GGTGTGAACACCAGGAATTGGACGGTC
*
37641749 CATTGGTGTGAACA
1 CTTTGGTGTGAACA
37641763 AAAGTAGCTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (31 bp):
CTTTGGTGTGAACACCAGGAATTGGACGGTC
Found at i:37645757 original size:32 final size:32
Alignment explanation
Indices: 37645721--37645800 Score: 144
Period size: 32 Copynumber: 2.5 Consensus size: 32
37645711 TTCACTTCCT
*
37645721 AGTGTTCACACCCAAAGGACCGTCTAAGTCCA
1 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
37645753 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
1 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
37645785 AGTGTTCACA-CCAAAG
1 AGTGTTCACACCCAAAG
37645801 ACTCTTCAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 6 0.13
32 41 0.87
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (32 bp):
AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
Found at i:37657909 original size:63 final size:59
Alignment explanation
Indices: 37657825--37657966 Score: 167
Period size: 63 Copynumber: 2.3 Consensus size: 59
37657815 AATCTAACTT
* * * * *
37657825 AGACAAGTATTAATGTGGTACAAACTAAGACACCATTAATAGACTTAGAACAACTAAACAATC
1 AGACATGTAATAATGTTGTACAAAATAAGACACAATTAATAGACTT--AACAA--AAACAATC
* * * *
37657888 AGACATGTAATAATGTTGTACAAAATAGGACACAATTAATAGACTTAACTAAAATATTC
1 AGACATGTAATAATGTTGTACAAAATAAGACACAATTAATAGACTTAACAAAAACAATC
37657947 AGACATGTAATAATGTTGTA
1 AGACATGTAATAATGTTGTA
37657967 TGAAATCAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
59 26 0.37
61 4 0.06
63 40 0.57
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (59 bp):
AGACATGTAATAATGTTGTACAAAATAAGACACAATTAATAGACTTAACAAAAACAATC
Found at i:37661472 original size:21 final size:21
Alignment explanation
Indices: 37661442--37661481 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37661432 GTTAGTTTCT
37661442 TTCTTCGAGTTGG-TCTAATCA
1 TTCTTCGAG-TGGCTCTAATCA
*
37661463 TTCTTGGAGTGGCTCTAAT
1 TTCTTCGAGTGGCTCTAAT
37661482 TGTTGTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.42
Consensus pattern (21 bp):
TTCTTCGAGTGGCTCTAATCA
Found at i:37665111 original size:38 final size:39
Alignment explanation
Indices: 37665039--37665112 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
37665029 TGTCCTAAAC
*
37665039 TATGACATAATTAAAAATCCTTATTAAAGATGTTCAGTT
1 TATGACATAATTAAAAATCCATATTAAAGATGTTCAGTT
* *
37665078 TATGACATAATTAAAACT-CATATTAATGATGTTCA
1 TATGACATAATTAAAAATCCATATTAAAGATGTTCA
37665113 AATTATGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.47
39 17 0.53
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (39 bp):
TATGACATAATTAAAAATCCATATTAAAGATGTTCAGTT
Found at i:37665119 original size:38 final size:39
Alignment explanation
Indices: 37665020--37665125 Score: 124
Period size: 38 Copynumber: 2.7 Consensus size: 39
37665010 TAAAGACATG
* * *
37665020 TATTAAAGATGTCCTAAACTATGACATAATTAAAAATCCT
1 TATTAAAGATGTTC-AAATTATGACATAATTAAAAATCCA
** *
37665060 TATTAAAGATGTTCAGTTTATGACATAATTAAAACT-CA
1 TATTAAAGATGTTCAAATTATGACATAATTAAAAATCCA
* *
37665098 TATTAATGATGTTCAAATTATGATATAA
1 TATTAAAGATGTTCAAATTATGACATAA
37665126 GTACAGACTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 25 0.45
39 18 0.32
40 13 0.23
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.37
Consensus pattern (39 bp):
TATTAAAGATGTTCAAATTATGACATAATTAAAAATCCA
Found at i:37669103 original size:9 final size:9
Alignment explanation
Indices: 37669085--37669113 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
37669075 ATAATATATA
37669085 TTTT-TTAT
1 TTTTCTTAT
37669093 TTTTCTTAT
1 TTTTCTTAT
37669102 TTTTCTTAT
1 TTTTCTTAT
37669111 TTT
1 TTT
37669114 CACTTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTCTTAT
Found at i:37672714 original size:79 final size:82
Alignment explanation
Indices: 37672603--37672787 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37672593 GCTACTCGTT
* * *
37672603 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37672666 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37672683 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37672746 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37672763 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37672788 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37672787 original size:40 final size:40
Alignment explanation
Indices: 37672584--37672787 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37672574 CGGAATTTAA
** *
37672584 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37672624 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37672664 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37672703 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37672743 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37672783 CCGGA
1 CCGGA
37672788 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37679723 original size:317 final size:316
Alignment explanation
Indices: 37679144--37679775 Score: 903
Period size: 317 Copynumber: 2.0 Consensus size: 316
37679134 CAATCAAATG
*
37679144 TAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACAAGGTGTTAACAGACTTTAAAAAATA
1 TAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACAAGGTCTTAACAGACTTTAAAAAAT-
* * *
37679209 ATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTGAGTTCAGAATCT
65 ATTTCCCAGACACTGCCAATCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTCACAATCT
* * *
37679274 CGGAATCCAGTTCCGTAAATTTTCCCTGAAACTAGACTCATATTCCCATCTACATATGTTTTTCC
130 CGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAGACTCATATCCCCACCTACATATGTTTTTCC
* *
37679339 AGAATTTTTTGTTGGGCAAATTAGTACAGTTTATTAGTAAAAGTCTCCCATGTTACAGGGATCGA
195 AGAATTTTTGGTCGGGCAAATTAGTACAGTTTATTAGTAAAAGTCTCCCATGTTACAGGGATCGA
* * * *
37679404 CTACACTGACCTTTTCGCATTACGACTTGGATATCTCCCTGTACAGGGCTTCAATTA
260 CTACACTGACCTCTTCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATTA
* * * *
37679461 TAACACCCCGAACCCGAGACCGTCACCGGAGTCGAATACGAGGTCTTGACAGACTTTTAAAAAT-
1 TAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACAAGGTCTTAACAGACTTTAAAAAATA
* *
37679525 TTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAA-C
66 TTTCCCAGACACTG-CCAATCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAG-TTCACAATC
** * * * * *
37679589 TCGAAAAT-CAGTTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGA-ATTTTT
129 TCG-AAATCCAG-TTCCGTAAATTTTCCCTGAAACTAGACTCATATCCCCACCTA-CATATGTTT
* * * *
37679652 TTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGG
191 TTCCAGAATTTTTGGTCGGGCAAATTAGTACAGTTTATTAGTAAAAGTCTCCCATGTTACAGGGA
*
37679717 TCGACTACACTGACCTCTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAAT
256 TCGACTACACTGACCTCTTCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAAT
37679776 ACTGATTCCG
Statistics
Matches: 279, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
315 13 0.05
316 44 0.16
317 221 0.79
318 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (316 bp):
TAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACAAGGTCTTAACAGACTTTAAAAAATA
TTTCCCAGACACTGCCAATCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTCACAATCTC
GAAATCCAGTTCCGTAAATTTTCCCTGAAACTAGACTCATATCCCCACCTACATATGTTTTTCCA
GAATTTTTGGTCGGGCAAATTAGTACAGTTTATTAGTAAAAGTCTCCCATGTTACAGGGATCGAC
TACACTGACCTCTTCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATTA
Found at i:37680885 original size:40 final size:40
Alignment explanation
Indices: 37680837--37681103 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
37680827 GCAAACACAT
* *
37680837 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
37680877 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37680917 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37680957 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37680997 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37681037 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37681077 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
37681104 ATCCAATGTT
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37684630 original size:79 final size:82
Alignment explanation
Indices: 37684519--37684703 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
37684509 GCTACTCGTT
* * *
37684519 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
37684582 GGATTTAGTAAC-TCGCG
65 GGATATAGTAACTTAGCA
* * **
37684599 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCGCAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37684662 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37684679 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37684704 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37684703 original size:40 final size:40
Alignment explanation
Indices: 37684500--37684703 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
37684490 CGGAATTTAA
** *
37684500 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37684540 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37684580 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37684619 CCGGA-ATTAGTATCTCGCGCAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37684659 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37684699 CCGGA
1 CCGGA
37684704 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 11 0.08
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37686930 original size:28 final size:28
Alignment explanation
Indices: 37686898--37686967 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
37686888 TATGGTACTC
*
37686898 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
37686926 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
37686954 AGTGTGCGAAATAT
1 AGTGTGCGAAATAT
37686968 CGAATGATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:37693665 original size:28 final size:28
Alignment explanation
Indices: 37693627--37693706 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
37693617 AATCAAATAT
* *
37693627 GGCACTCAGTGTACGAAATATTGAGAAC
1 GGCACTTAGTGTGCGAAATATTGAGAAC
* *
37693655 GGCACTTAGTGTGCGAGATATTGAGAAT
1 GGCACTTAGTGTGCGAAATATTGAGAAC
* *
37693683 GACACTTAGTGTGTGAAATATTGA
1 GGCACTTAGTGTGCGAAATATTGA
37693707 ATGATTCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAAATATTGAGAAC
Found at i:37698727 original size:18 final size:16
Alignment explanation
Indices: 37698704--37698765 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
37698694 TCAGTAGCAT
37698704 TCAGTTACTCTATAACAG
1 TCAGTTA-TC-ATAACAG
37698722 TCAGTTATACAATAACAG
1 TCAGTTAT-C-ATAACAG
*
37698740 TCATTTATTCAGTAACAG
1 TCAGTTA-TCA-TAACAG
*
37698758 TCAATTAT
1 TCAGTTAT
37698766 TCCGTAGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.08
18 34 0.89
19 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (16 bp):
TCAGTTATCATAACAG
Found at i:37698766 original size:18 final size:18
Alignment explanation
Indices: 37698715--37698767 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
37698705 CAGTTACTCT
* *
37698715 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
*
37698733 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
*
37698751 GTAACAGTCAATTATTC
1 ATAACAGTCAATTATTC
37698768 CGTAGCAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:37698920 original size:6 final size:6
Alignment explanation
Indices: 37698909--37698942 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
37698899 CACCGCAACG
*
37698909 GTAACA GTAACA GTAACA GTAACA GTCACA GTAA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAA
37698943 TGGTACACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:37700125 original size:19 final size:19
Alignment explanation
Indices: 37700101--37700139 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37700091 AATACTTATT
*
37700101 TATTATTTA-TACATGTGTA
1 TATTA-TTAGTACATATGTA
37700120 TATTATTAGTACATATGTA
1 TATTATTAGTACATATGTA
37700139 T
1 T
37700140 CCATATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAGTACATATGTA
Found at i:37700189 original size:15 final size:15
Alignment explanation
Indices: 37700163--37700224 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 15
37700153 TAAACTTGTC
37700163 TTTTAT-TTATTATA
1 TTTTATATTATTATA
37700177 TTTTATATTATTATA
1 TTTTATATTATTATA
* *
37700192 -TTAATA-TAATATA
1 TTTTATATTATTATA
*
37700205 CTTTA-ATTATTATTA
1 TTTTATATTATTA-TA
37700220 TTTTA
1 TTTTA
37700225 CTTATATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 7 0.18
14 18 0.46
15 14 0.36
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTATATTATTATA
Found at i:37700229 original size:15 final size:14
Alignment explanation
Indices: 37700163--37700235 Score: 51
Period size: 14 Copynumber: 5.0 Consensus size: 14
37700153 TAAACTTGTC
37700163 TTTTATTTATTA-TA
1 TTTTA-TTATTATTA
37700177 TTTTA-TATTATTA
1 TTTTATTATTATTA
* * *
37700190 TATTAATATAATATA
1 TTTTATTATTAT-TA
*
37700205 CTTTAATTATTATTA
1 -TTTTATTATTATTA
37700220 TTTTACTTATATATTA
1 TTTTA-TTAT-TATTA
37700236 AGTAAATACA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
12 5 0.11
13 6 0.13
14 14 0.30
15 8 0.17
16 13 0.28
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTATTATTATTA
Done.