Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 136 of 211
Found at i:40161834 original size:11 final size:11
Alignment explanation
Indices: 40161798--40161842 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
40161788 TAAGCTCCAT
40161798 TTCAGCTC-AA
1 TTCAGCTCAAA
*
40161808 -TGAGCTCAAA
1 TTCAGCTCAAA
40161818 -TCAGCTCAAA
1 TTCAGCTCAAA
*
40161828 TTCAGCTCAAT
1 TTCAGCTCAAA
40161839 TTCA
1 TTCA
40161843 TTTAGAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
9 6 0.20
10 11 0.37
11 13 0.43
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (11 bp):
TTCAGCTCAAA
Found at i:40176396 original size:102 final size:103
Alignment explanation
Indices: 40176131--40176385 Score: 413
Period size: 102 Copynumber: 2.5 Consensus size: 103
40176121 ATTGCATATA
* *
40176131 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
* *
40176196 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTAAGTGCTAATTCCCCC
* ** *
40176234 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
40176299 TGAAATGTG-AAGGGGGTTGCTAAGTGCTAATTCCCCT
66 TGAAATGTGAAAGGGGGTTGCTAAGTGCTAATTCCCCC
*
40176336 AAGGGGTTGCTGTGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
40176386 GAAATCCACC
Statistics
Matches: 138, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
102 71 0.51
103 67 0.49
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.33
Consensus pattern (103 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATGTGAAAGGGGGTTGCTAAGTGCTAATTCCCCC
Found at i:40183847 original size:102 final size:103
Alignment explanation
Indices: 40183611--40183865 Score: 431
Period size: 102 Copynumber: 2.5 Consensus size: 103
40183601 ATTGCATATA
* * *
40183611 AAGGGGTTGCTGTGTGATGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
40183676 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* ** *
40183714 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
40183779 TGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
40183816 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
40183866 GGAATCGACC
Statistics
Matches: 140, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
102 74 0.53
103 66 0.47
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (103 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:40190851 original size:45 final size:45
Alignment explanation
Indices: 40190784--40190871 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
40190774 ACAGATACTC
* *
40190784 GGTGGATTCAGCACATAACAACCACCTTATTACTCAATGATGTCT
1 GGTGGATTCAGCACATAACAACCACCTTACTAATCAATGATGTCT
*
40190829 GGTGGAATT-AGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGG-ATTCAGCACATAACAACCACCTTACTAATCAATGATGT
40190872 TCGGTTCACA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 36 0.92
46 3 0.08
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (45 bp):
GGTGGATTCAGCACATAACAACCACCTTACTAATCAATGATGTCT
Found at i:40190945 original size:51 final size:51
Alignment explanation
Indices: 40190873--40191068 Score: 200
Period size: 51 Copynumber: 3.9 Consensus size: 51
40190863 CAATGATGTT
* *
40190873 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
** * * * * * *
40190924 CAATATACGTAGTAGCTTGCACATAGTACTACACACGTGATCGA-AACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATTACCATC
* * * * * *
40190975 CGGTACGCATAGTAGCCTGCATATTGTACTACACATGCGA-C-TTATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TC
*
40191025 CGGTACACGTAGTAGCCTGCACATAGTACTACACAAGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
40191069 CACTTTCACT
Statistics
Matches: 110, Mismatches: 30, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
49 2 0.02
50 36 0.33
51 69 0.63
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
Found at i:40191057 original size:101 final size:102
Alignment explanation
Indices: 40190880--40191064 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
40190870 GTTCGGTTCA
* * *
40190880 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCAATATACGTAGTAGCTTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCAATACACGTAGTAGCCTGCA
*
40190945 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
66 CATAGTACTACACAAGTGATCGAAACTATCCGGTACG
* * * **
40190982 CATAGTAGCCTGCATATTGTACTACACATGCGA-C-TTATCATTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCA-TCCAATACACGTAGTAGCCTGC
40191045 ACATAGTACTACACAAGTGA
65 ACATAGTACTACACAAGTGA
40191065 CCATCACTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 5 0.07
101 38 0.52
102 30 0.41
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCAATACACGTAGTAGCCTGCA
CATAGTACTACACAAGTGATCGAAACTATCCGGTACG
Found at i:40194374 original size:21 final size:19
Alignment explanation
Indices: 40194328--40194402 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
40194318 AATCTTCAAG
40194328 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
40194347 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
40194366 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
40194387 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
40194403 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:40194424 original size:23 final size:22
Alignment explanation
Indices: 40194328--40194425 Score: 88
Period size: 19 Copynumber: 4.7 Consensus size: 22
40194318 AATCTTCAAG
40194328 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
40194347 GATATGCAATCTTAG--G-TAT
1 GATATGCAATCTTAGAAGATAT
40194366 GATATATGCAATCTT---AGATAT
1 G--ATATGCAATCTTAGAAGATAT
40194387 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
40194409 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
40194426 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 16
0.79 0.02 0.19
Matches are distributed among these distances:
19 29 0.43
20 2 0.03
21 16 0.24
22 8 0.12
23 12 0.18
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:40195031 original size:36 final size:36
Alignment explanation
Indices: 40194956--40195031 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
40194946 CATACATACG
*
40194956 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
40194993 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
40195029 TTT
1 TTT
40195032 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:40198491 original size:23 final size:22
Alignment explanation
Indices: 40198448--40198491 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
40198438 TTCTAAGTCG
40198448 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
40198471 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
40198492 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:40198616 original size:45 final size:45
Alignment explanation
Indices: 40198539--40198624 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
40198529 AGATACTCGG
*
40198539 TGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
1 TGGAATCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
*
40198584 TGGAATCAGCACATAGCAACCACCTT-TCTAATCAATGATGT
1 TGGAATCAACACATAGCAACCACCTTAT-TAATCAATGATGT
40198625 TCGGTTCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (45 bp):
TGGAATCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
Found at i:40198693 original size:51 final size:51
Alignment explanation
Indices: 40198626--40198821 Score: 227
Period size: 51 Copynumber: 3.9 Consensus size: 51
40198616 CAATGATGTT
* *
40198626 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
* * * * *
40198677 CGATATACGTAGTAGCCTGCACATAGTACTACACATGTGATCGA-AACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATTACCATC
* * * * *
40198728 CGGTACGCATAGTAGCCTGCGCATAGTACTACACATGCGA-C-TTATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TC
* *
40198778 CGGTACACGTAATAGCCTGCACATAGTACTACACAAGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
40198822 CACTTTCACT
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.02
50 36 0.31
51 76 0.65
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
Found at i:40198841 original size:101 final size:100
Alignment explanation
Indices: 40198632--40198817 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 100
40198622 TGTTCGGTTC
* * *
40198632 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATATACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAATAGCCTGC
* *
40198697 ACATAGTACTACACATGTGATCGAAACTATCCGGT
66 ACATAGTACTACACAAGTGATCCAAACTATCCGGT
* * *
40198732 ACGCATAGTAGCCTGCGCATAGTACTACACATGCGA-C-TTATCATTCCGGTACACGTAATAGCC
1 A--CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCA-TCCGATACACGTAATAGCC
40198795 TGCACATAGTACTACACAAGTGA
63 TGCACATAGTACTACACAAGTGA
40198818 CCATCACTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 6 0.08
101 39 0.51
102 31 0.41
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (100 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAATAGCCTGC
ACATAGTACTACACAAGTGATCCAAACTATCCGGT
Found at i:40201479 original size:19 final size:18
Alignment explanation
Indices: 40201433--40201480 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
40201423 CGAAAAACTT
*
40201433 TTGTCATAAAATAATTAAT
1 TTGT-ATAAAATAATTAAA
*
40201452 TTTTATAAAATAATTAAA
1 TTGTATAAAATAATTAAA
40201470 TTGTATTAAAA
1 TTGTA-TAAAA
40201481 ATTTGAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (18 bp):
TTGTATAAAATAATTAAA
Found at i:40202101 original size:14 final size:14
Alignment explanation
Indices: 40202078--40202107 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
40202068 AATCCCTCAT
*
40202078 TCACATCTCTTCTC
1 TCACAACTCTTCTC
40202092 TCACAACTCTTCTC
1 TCACAACTCTTCTC
40202106 TC
1 TC
40202108 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:40204355 original size:14 final size:15
Alignment explanation
Indices: 40204336--40204364 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
40204326 GAGTATGGTA
40204336 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
40204350 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
40204365 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:40207082 original size:70 final size:70
Alignment explanation
Indices: 40206995--40207135 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
40206985 AAAATTGAAA
40206995 CCCAAATACCACACATAAAACTTGAACTTTTCTCTATCTTTGGTCCTTTAATACATTACGAAATA
1 CCCAAATACCACACATAAAACTTGAACTTTTCTCTATCTTTGGTCCTTTAATACATTACGAAATA
40207060 GACAC
66 GACAC
40207065 CCCAAATACCACACATAAAACTTGAACTTTTCTCTATCTTTGGTCCTTTAATACATTACGAAATA
1 CCCAAATACCACACATAAAACTTGAACTTTTCTCTATCTTTGGTCCTTTAATACATTACGAAATA
40207130 GACAC
66 GACAC
40207135 C
1 C
40207136 AGGCCATAGA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (70 bp):
CCCAAATACCACACATAAAACTTGAACTTTTCTCTATCTTTGGTCCTTTAATACATTACGAAATA
GACAC
Found at i:40226582 original size:79 final size:82
Alignment explanation
Indices: 40226446--40226630 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
40226436 TTGAATGATG
* *
40226446 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
40226510 TGTGCGAGATACTA-AT
66 TGTGCGAGATACTATAA
* * * **
40226526 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
40226588 TTGTGCGAGTTACTATAA
65 TTGTGCGAGATACTATAA
*
40226606 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
40226631 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATAA
Found at i:40226637 original size:40 final size:40
Alignment explanation
Indices: 40226446--40226630 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
40226436 TTGAATGATG
* * * *
40226446 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
40226486 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
40226526 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
40226565 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
40226606 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
40226631 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:40226652 original size:79 final size:79
Alignment explanation
Indices: 40226499--40226663 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
40226489 GGACTAAGAT
* * **
40226499 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
40226564 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
40226578 CCGAAGGCAATTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
40226641 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
40226657 CCGAAGG
1 CCGAAGG
40226664 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 47 0.64
80 27 0.36
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:40242432 original size:18 final size:18
Alignment explanation
Indices: 40242409--40242444 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
40242399 AAGGACATAG
40242409 TATATCATTTGATCTAAT
1 TATATCATTTGATCTAAT
40242427 TATATCATTTGATCTAAT
1 TATATCATTTGATCTAAT
40242445 ACATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (18 bp):
TATATCATTTGATCTAAT
Found at i:40242562 original size:40 final size:40
Alignment explanation
Indices: 40242518--40242638 Score: 174
Period size: 40 Copynumber: 3.0 Consensus size: 40
40242508 AAATTCACTT
40242518 AGGGGTACCAGAA-TACAAACT-GGGGCACGTATGTGCAATC
1 AGGGGTACC-GAAGTACAAA-TAGGGGCACGTATGTGCAATC
* *
40242558 AGGGGTACTGAAGTACAAATAGGAGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
* *
40242598 AAGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
40242638 A
1 A
40242639 TTCAATTATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 4 0.05
40 69 0.95
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
Found at i:40246760 original size:25 final size:25
Alignment explanation
Indices: 40246732--40246787 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
40246722 TATGCTCTCG
40246732 CGAGCTATAAATCGGTATGATCTTA
1 CGAGCTATAAATCGGTATGATCTTA
* *** *
40246757 CGAGATATAAATTTTTATGGTCTTA
1 CGAGCTATAAATCGGTATGATCTTA
40246782 CGAGCT
1 CGAGCT
40246788 GTGGAGTATC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (25 bp):
CGAGCTATAAATCGGTATGATCTTA
Found at i:40250215 original size:40 final size:40
Alignment explanation
Indices: 40250157--40250263 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
40250147 GTACAGAAAA
* * *
40250157 ACAAACACGAGCATGTATGTGCAATCAGGGATA-TCGAAGT
1 ACAAACAGGAGCACGTATGTGCAATCAGGGATACT-AAAGT
* *
40250197 ACAAACAGGTGCACGTATGTGCAATCAGGGGTACTAAAGT
1 ACAAACAGGAGCACGTATGTGCAATCAGGGATACTAAAGT
*
40250237 ACAAACAGGGGCACGTATGTGCAATCA
1 ACAAACAGGAGCACGTATGTGCAATCA
40250264 TTCAATTATT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 59 0.98
41 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (40 bp):
ACAAACAGGAGCACGTATGTGCAATCAGGGATACTAAAGT
Found at i:40257596 original size:14 final size:14
Alignment explanation
Indices: 40257577--40257610 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
40257567 ACAGATGGAT
*
40257577 TCATATCATTCTTA
1 TCATATAATTCTTA
40257591 TCATATAATTCTTA
1 TCATATAATTCTTA
40257605 T-ATATA
1 TCATATA
40257611 TTGTACAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATATAATTCTTA
Found at i:40258988 original size:14 final size:14
Alignment explanation
Indices: 40258969--40258995 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40258959 TACATTGGGC
40258969 AGATTCATGCATGT
1 AGATTCATGCATGT
40258983 AGATTCATGCATG
1 AGATTCATGCATG
40258996 GGATGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:40265150 original size:8 final size:9
Alignment explanation
Indices: 40265124--40265151 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
40265114 CAAAAACGAA
40265124 TTCAATTTT
1 TTCAATTTT
40265133 TTCAATTTT
1 TTCAATTTT
40265142 TTCAATTTT
1 TTCAATTTT
40265151 T
1 T
40265152 GGGAAGCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (9 bp):
TTCAATTTT
Found at i:40269779 original size:21 final size:21
Alignment explanation
Indices: 40269753--40269804 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
40269743 TCACTTCATT
40269753 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
40269774 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
40269795 TCTTTTTGTC
1 TCTTTTTGTC
40269805 TAACTCACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.10, C:0.23, G:0.12, T:0.56
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:40269815 original size:21 final size:21
Alignment explanation
Indices: 40269733--40269815 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 21
40269723 ACAGAAAAGA
*
40269733 TTTGTCTAAGTCACTTCATTTCTT
1 TTTGTCCAAGTCACTTC---TCTT
*
40269757 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
**
40269778 TTTGTCCAAGTTGCTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
* *
40269799 TTTGTCTAACTCACTTC
1 TTTGTCCAAGTCACTTC
40269816 ATTTTTTCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
21 37 0.71
24 15 0.29
ACGTcount: A:0.14, C:0.24, G:0.10, T:0.52
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTCTT
Found at i:40272213 original size:18 final size:18
Alignment explanation
Indices: 40272180--40272273 Score: 104
Period size: 18 Copynumber: 5.4 Consensus size: 18
40272170 AAGGTTTTCT
40272180 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
40272195 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
40272213 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* * * *
40272231 TATCGATGCTAGTGATGC
1 TATTGATGATAGTGACGA
* *
40272249 TATTAATGATAGTGACGC
1 TATTGATGATAGTGACGA
40272267 TATTGAT
1 TATTGAT
40272274 CGTGACCTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
15 11 0.16
16 1 0.01
18 55 0.82
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:40272268 original size:27 final size:27
Alignment explanation
Indices: 40272195--40272273 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
40272185 ATGATATCGA
*
40272195 TATTGATGATAGTGACGATATTGATGC
1 TATTGATGATAGTGACGCTATTGATGC
* * * *
40272222 TAGTGACGATA-TCGATGCTAGTGATGC
1 TATTGATGATAGT-GACGCTATTGATGC
*
40272249 TATTAATGATAGTGACGCTATTGAT
1 TATTGATGATAGTGACGCTATTGAT
40272274 CGTGACCTTG
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.35
Consensus pattern (27 bp):
TATTGATGATAGTGACGCTATTGATGC
Found at i:40272873 original size:38 final size:38
Alignment explanation
Indices: 40272822--40272903 Score: 164
Period size: 38 Copynumber: 2.2 Consensus size: 38
40272812 TAGAAAAACT
40272822 TGGGATTTGCGATCCCAGGTAAGATTGGTTTAGGATCA
1 TGGGATTTGCGATCCCAGGTAAGATTGGTTTAGGATCA
40272860 TGGGATTTGCGATCCCAGGTAAGATTGGTTTAGGATCA
1 TGGGATTTGCGATCCCAGGTAAGATTGGTTTAGGATCA
40272898 TGGGAT
1 TGGGAT
40272904 CCTTTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.32
Consensus pattern (38 bp):
TGGGATTTGCGATCCCAGGTAAGATTGGTTTAGGATCA
Found at i:40274494 original size:11 final size:11
Alignment explanation
Indices: 40274478--40274524 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
40274468 TTTCTATGCT
40274478 ATTAGTATTAG
1 ATTAGTATTAG
40274489 ATTAGTATTA-
1 ATTAGTATTAG
*
40274499 CTTAG-ATTAG
1 ATTAGTATTAG
40274509 ATTAGTATTAG
1 ATTAGTATTAG
40274520 -TTAGT
1 ATTAGT
40274525 GATCCCGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 4 0.12
10 13 0.41
11 15 0.47
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:40274509 original size:20 final size:21
Alignment explanation
Indices: 40274479--40274524 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
40274469 TTCTATGCTA
40274479 TTAGTATTAGATTAGTATTAC
1 TTAGTATTAGATTAGTATTAC
*
40274500 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAC
40274520 TTAGT
1 TTAGT
40274525 GATCCCGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAC
Found at i:40279975 original size:75 final size:75
Alignment explanation
Indices: 40279837--40280124 Score: 398
Period size: 75 Copynumber: 3.8 Consensus size: 75
40279827 TGATTCTCCC
* * * * *
40279837 AAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGTTAAGTGTTGATTCCATCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
40279902 TTAAATGTGA
66 TTAAATGTGA
* * * * *
40279912 AGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTTCTAAGTGCTAATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
40279977 TTAAATGTGA
66 TTAAATGTGA
* * * *
40279987 AAGGGGCTGCTAAGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGGGCTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-T
*
40280052 TTTGAATGTGAA
65 TTTAAATGTG-A
*
40280064 AAGGGGTTGCTAAGTGCTAATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATT-CACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTG-ATTCCACCG
40280125 ATAACGGATA
Statistics
Matches: 185, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
75 120 0.65
76 9 0.05
77 53 0.29
78 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
TTAAATGTGA
Found at i:40284841 original size:32 final size:32
Alignment explanation
Indices: 40284794--40284855 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
40284784 CATCTATTTT
40284794 CATTGGTCAAATCTTTGACAACACGAAAAATC
1 CATTGGTCAAATCTTTGACAACACGAAAAATC
* * *
40284826 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGGTCAAATCTTTGACAACACGAAAAA
40284856 ACCAAGAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.27
Consensus pattern (32 bp):
CATTGGTCAAATCTTTGACAACACGAAAAATC
Found at i:40294352 original size:617 final size:617
Alignment explanation
Indices: 40287462--40305375 Score: 14163
Period size: 617 Copynumber: 28.6 Consensus size: 617
40287452 GTTTATGAAA
40287462 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * *
40287527 AATGGCTAAGTGGTTTGGGTGTGTATGGGAGTGTTTTAGAAGTCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
40287592 GCACAATTTTAAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAATTTT-AGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * *
40287657 TACTTGTTTTATGACACAAAGAGCCTACTAGTCCAATGTTAGGTTCATTGGGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40287722 TGCAACGTGTGGGACTGATCGTTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGAT
260 TGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40287787 GTGTTTCACGTCTCCATGCTAAGGCATTATCACTCTGACCCCACTCACATGGTACCAGTTAAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * *
40287852 GATTGAGGTTAGGCATA-ATCTGACCTTCAAGGAGAAGCTAGTGCGGGTTTTGGACCGTGAGGTG
390 GATTGAGGTTAGGC-TAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTG
* * * *
40287916 AAGTTACTGAGGAAGAAATCTATTCCATTACTCAAAGTACTTTGGCGTAATCACAATTTAGAAGA
454 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * *
40287981 AGCCACGTGGGAACCCAAAGAGGCGATGCGCCAGCAATACCCTCATCCTTTCTGACCAGGTAAAT
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
*
40288046 TTCAAGGCTGAAATTTTGTTAAA-GGGGTAGAGT
584 TTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * *
40288079 TGTAATGCTCCAAAATTTAAGTCTCTAAGTTTTGCTTGTTTTGACACAAAATT-CTTGTTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGCTT
* * * *
40288143 TAATGGCTAAGTGATTTGGGTGTATATAGGAGTGTTTGAGAAGCCTAGGTTCAAGTCCTGGACC-
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG-CCT
* *
40288207 TGGCACAATTTTTAGTTTTTCTCTCAAATGAATCTCGACACTGGCACTTAGGCCTTTTATATATT
129 TGGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * * * *
40288272 AATAATTGTTTTATGACACAAAGAGCCTATTGGTCTAGTGGTAGGTTAATTGGGCCTTACCATGC
193 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* * * * * * * *
40288337 ACTGCAACGTGTGGGACTGATCGCTTATAAATTAGGGTTTCCTCTGAAATTAGAGCATATTCATG
258 ACTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * *
40288402 -TCGTGTTTCACGTCTCCATGCTCAGGCGTTATCGCTCTGATCCCACTCACATAGTACTAGTTTA
323 AT-GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * *
40288466 GGAGATTGAGGTTACGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTTGACCTTGAGG
387 GGAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
*
40288531 TGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
452 TGAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * *
40288596 GAAGCCACTTGGGAACCCGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTTTGACCAGGT
517 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCA--TCTTTTCTGACCAGGT
* * *
40288661 AAATTTTGAGGTTGAAATTTTGTTAAATGGGGGTAGATT
580 AAATTTCGAGGCTGAAATTTTGTTAAA-GGGGGTAGAGT
* * *
40288700 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTAGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * * * *
40288765 AATGACTAAGTGATTTAGGTGTGTATGAGAGTGTTTTAGAAGCCTGGGTTCAAGTTTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * *
40288830 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTAGCACTTACGCCTTTTATATAATAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * **
40288895 TACTTGTTTTATGACACAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTTTGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
*
40288960 TGCAACATGTGAGACCGATC-ACTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * * *
40289024 TATGTTTCACGTCTCCATGCTAAGCCATTACCACTCTAACCCCACTCACATAGTACCAGTTGAGG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * * ** *
40289089 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAAAAACCAGTGCAGATTTTTGATTGTGAGGTA
389 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTG
* *
40289154 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCATAGTTCAGAAGA
454 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * *
40289219 AGCCACGTGAGAACCCGAAGAGGCGATACGACAGCAATACCCTCATCTTTTCTGACCAGGAAAAT
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * * *
40289284 TTCAAGGCTAAAATTTTGTTCAA-TGGGTAGAGT
584 TTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40289317 TGTAACACCCTAAAACTTAAGTTTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
*
40289382 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40289447 GCACAAGTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCAGTTAGGCCTTTTATATATGAAT
131 GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
*
40289512 ACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
196 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
* * *
40289577 GAAACATGTGGGACCGATC-ACTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
261 GCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* *
40289641 GTGTTACACGTCTCCATGCTAAGGCATTATCGCTCTGCTCCCACTCACATAGTACCAGTTGAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * *
40289706 GATTGAGGTTACGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTTGACCTTGAGGTGA
390 GATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
*
40289771 AGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
455 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * * *
40289836 GCCACTTGGGAACCCGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTTTGACCAGGTAAA
520 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCA--TCTTTTCTGACCAGGTAAA
* * *
40289901 TTTTGAGGTTGAAATTTTGTTAAATGGGGGTAGATT
583 TTTCGAGGCTGAAATTTTGTTAAA-GGGGGTAGAGT
* * *
40289937 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTAGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * * * *
40290002 AATGACTAAGTGATTTAGGTGTGTATGAGAGTGTTTTAGAAGCCTGGGTTCAAGTTTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * *
40290067 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTAGCACTTACGCCTTTTATATAATAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * **
40290132 TACTTGTTTTATGACACAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTTTGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
*
40290197 TGCAACATGTGAGACCGATC-ACTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * * *
40290261 TATGTTTCACGTCTCCATGCTAAGCCATTACCACTCTAACCCCACTCACATAGTACCAGTTGAGG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * ** *
40290326 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAAAAACCAGTGCAGATTTT-GATTGTGAGGTA
389 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTG
* *
40290390 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCATAGTTCAGAAGA
454 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * *
40290455 AGCCACGTGAGAACCCGAAGAGGCGATACGACAGCAATACCCTCATCTTTTCTGACCAGGAAAAG
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * * *
40290520 TTCAAGGCTAAAATTTTGTTCAA-TGGGTAGAGT
584 TTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40290553 TGTAAC-ACCTAAAACTTAAGTTTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
*
40290617 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40290682 GCACAAGTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCAGTTAGGCCTTTTATATATGAAT
131 GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
*
40290747 ACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
196 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
* * *
40290812 GAAACATGTGGGACCGATC-ACTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
261 GCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* *
40290876 GTGTTACACGTCTCCATGCTAAGGCATTATCGCTCTGCTCCCACTCACATAGTACCAGTTGAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
*
40290941 GATTGAGGTTACGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT-A
390 GATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
*
40291005 ATGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
455 A-GTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * *
40291070 AGCCACGTGGGAACCCGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTGACCAGGTAAAT
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * *
40291135 TTCGAGGTTAAAATTTTGTTAAATGGGGGTAGATT
584 TTCGAGGCTGAAATTTTGTTAAA-GGGGGTAGAGT
* * *
40291170 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTTCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * * * * *
40291235 AATGACTAATTGATTTGGGTGTGTATGAGAGTGTTTTAAAAGCCTGGGTTCAAGTTTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* ** *
40291300 GCACAATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACTTACTCCTTTTAAATATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * * *
40291365 TACTTGTTTTATGACACAAAGCGGCTATTGGTCCAGTGGTAGGTTGATTTGGCCTTATCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
*
40291430 TGCAACATGTGAGACCGATC-ACTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * * *
40291494 TATGTTTCACGTCTCCATGCTAAGCCATTACCACTCTAACCCCACTCACATAGTACCAGTTGAGG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * **
40291559 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGG-GAAAACCAGTGCAGATTTTTGATTGTGAGGT
389 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAG-AAGCCAGTGCAGATTTTGGACCGTGAGGT
* * *
40291623 AAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTTAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* *
40291688 AAGCCACGTGAGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGAAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
* * * *
40291753 TTTCAAGGCTAAAATTTTGTTCAA-TGGGTAGAGT
583 TTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40291787 TGTAACACCCTAAAACTTAAGTTTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
*
40291852 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40291917 GCACAAGTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCAGTTAGGCCTTTTATATATGAAT
131 GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
*
40291982 ACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
196 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
* * *
40292047 GAAACATGTGGGACCGATC-ACTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
261 GCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* *
40292111 GTGTTACACGTCTCCATGCTAAGGCATTATCGCTCTGCTCCCACTCACATAGTACCAGTTGAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
*
40292176 GATTGAGGTTACGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
390 GATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
* *
40292241 TGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
455 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * *
40292306 GCCACGTGGGAACCCGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTGACCAGGTAAATT
520 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* *
40292371 TCGAGGTTGAAATTTTGTTAAATGGGGGTAGATT
585 TCGAGGCTGAAATTTTGTTAAA-GGGGGTAGAGT
* *
40292405 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAAGTT-CTTGTTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAA-TTGCTTGTTTGCTT
* * * * * *
40292469 TAATGACTAATTGATTTGGGTGTGTATGAGAGTGTTTTAAAAGCCTGGGTTCAAGTTTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * **
40292534 GGCACAATTTTTAGTTTTTCTGTTAAATTAATCTGGACACTGGCACTTACTCCTTTTATATATTA
130 GGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* * * *
40292599 ATACTTGTTTTATGACACAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTTGGCCTTATCGTGTA
194 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * *
40292664 CTGCAACATGTGAGACCGATC-ACTTACAAACTAGAGTTTCCTCTAAAATTACACCAGATTCATG
259 CTGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * * * *
40292728 ATATGTTTCACGTATCCATGCTAAGCCATTACCACTCTGACCCCACTCACATACTACCAGTTGAG
323 ATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * * * ** *
40292793 GAGATTGAGGTTAGGCCAGATTTGACCCTCGAGGAAAAACCAGTGCAGATTTTGGATTGTGAGCT
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
*
40292858 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTCAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
** * *
40292923 AAGCCACGTGACAACCCGAAGAGGCGATGCGACAGCAATACCCTCACCTTTTCTGACCAGGAAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
* * *
40292988 TTTCAAGGCT-AGAATTTTGTTCAATGGGGTAGAGT
583 TTTCGAGGCTGA-AATTTTGTTAAAGGGGGTAGAGT
* * * * *
40293023 TGTAACACCCCAAAACTTAAGTTTCGAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
40293088 AATGGCTAAGTGATTTGGGTGTG-AGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
66 AATGGCTAAGTGATTTGGGTGTGTA-TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * * *
40293152 GGCACAAGTTTAGTTTTTCTCTTAAAGGAATCTGGACACTGGCAGTTAGGCCTTTTATACATTAA
130 GGCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
*
40293217 TACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * *
40293282 TGAAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
260 TGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40293347 GTGTTACACGTCTCCGTGCTAAGGCGTTATCGCTCTGCTCCCACTCACATAGTACCAGTTGAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * *
40293412 GATTGAGGTTAGTCCAGATCTGACCTTCGAGGAGAAGCCAATGCGGATTTTGGACCGTGAGGTTA
390 GATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
* * *
40293477 AGCTACTAAGGAA-AAATCTATTCCATTAGTTAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
455 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
** * * * * *
40293541 GAAACGTGGGAACCCGAATAGGCGATGTGACAACAATACCGTCATCTTTTCTGACCAGGTAGATT
520 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* *
40293606 TCGAGGCTAAAATTTTGTTAAAGTGGGTAGAGT
585 TCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
** * * * * *
40293639 TGTAACGCCCCAAAACATAGGTTTCTAAATTTTGCATGTTTTGACAAAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * *
40293704 AATGGCTAAGAGATTTGGGTGTGTATGGGAGTGTTTGAAAAGCCTGGGTTCAAGTATTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * * *
40293769 GCACAATTTTTAATATTTCTGTTAAATGAATCTGAATACTGGCACTTAGGCCTTTTAT-TATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * * * * *
40293833 TACTTGTTTTATGACACAAAGAGGCTATTAGTTCAGAGGTAGGTTCATTGGTCCCTATCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * *
40293898 TGCAACGTGTGGGACCAATCGATTATAAAC-ATGAGTTGCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGATCGATTATAAACTA-GAGTTTCCTCTAAAATTAGACCAGATTCATGA
*** * * * *
40293962 TGTGTTTCACGTCTCCAATG-TAAGGTGCTATTGTTCTGATCCCACTCACACAGTACCAGTTGAA
324 TGTGTTTCACGTCTCC-ATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * *
40294026 GAGATTGAGGTTAGACTAGATCTGACCTTCGATGAGAAGCCAGTGCAAATTTTGGGCCGTGAGGT
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* * * *
40294091 GAAGTTACTGAGAAAGAAATATTTTCCATTAGTCAAAGTGCTTTGGTGTAATCACAGTTCAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * *
40294156 AAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGCAATACCCTTATCTTCTCTAACCAGGTAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
*
40294221 TTTTGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
583 TTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* *
40294256 TGTAACACCCCAAAATTTAAGTTTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
*
40294321 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTTGGTTCAAG---T---CTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * *
40294380 GC-C-----T-GTTTTTCCCTTAAATGAATCTTGACACTGGGACTTAGGCCTTTTATATATTAAT
131 GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
* * *
40294438 ACTTGTTTTATGACACAAAGAGGCTATTGGTCCAATGGTAGGTTGATTGGGCCTTACCGTGTACT
196 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
* * * * * *
40294503 GCAACGTGTGGGACTGATCGCTTATAAACTAGGGTTTCCTTTGAAATTAGACCAGATTCATGATG
261 GCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGATG
* * *
40294568 TGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCCGATTCCACTCACATAGTACCAGTTGAGGAG
326 TGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAG
* * * *
40294633 ATTGAGGTTAGGCTAGATCTGACCTTCAAGGAGAAGCTAGTGCGGATTTTGGACCGTGAGGTGAT
391 ATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAA
* * *
40294698 GTTACAGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTCTT-GCGTAATCGCAGTTCAGAAGAG
456 GTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCT-TTGGCGTAATCACAGTTCAGAAGAA
* * * * *
40294762 GCGACGTGGGAACACGAGGAGGTGATGCGACAGCAAGACCCTCATCTTTTCTGACCAGGTAAATT
520 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* * *
40294827 TGGAGGCTGAAATTTTGTTGAAGTGGGTAGAGT
585 TCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * ** * *
40294860 TGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATCTTTTTACACGGATTACTTGTTTACTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
40294925 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAG---T---CTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40294984 GC-C-----T-GTTTTTCTCTTCAATGAATCTTGACACTAGCACTTAGGCCTTTTATATATCAAT
131 GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
*
40295042 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGTACT
196 ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
* * *
40295107 GCAACATGTGGGACCGATCGCTTATAAACTAGACTTTCCTCTAAAATTAGACCAGATTCAAGATG
261 GCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGATG
* * * * * * *
40295172 TGTTTCACATCTCCATGCTAAAGCGTTAACGCTCTGACCCCAGTCTCATAGTACCAGTTGAGGAG
326 TGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAG
* *
40295237 ATTGAGGTTAGGAC-AGATCTAACCTTCGAGGAGAAGCCAGTGCAGATTTTGGGCCGTGAGGTGA
391 ATTGAGGTTAGG-CTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
* *
40295301 AGTTAGTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCTTAATCACAGTTCAGAAGAA
455 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * *
40295366 GCCACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTAACCAAGTAAATT
520 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* *
40295431 TCGAGGCTGATATTTTGTTAAAGGAGGTAGAGT
585 TCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * *
40295464 TGTAATC-CCCCAAAATTTAAGTCTCTAAGTTTTGC-TGTTTTGACACAAAATGTTTGTTTGTTT
1 TGTAA-CGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTT
* * *
40295527 TAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGCCCCT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * *
40295592 GGGACAATTTTTTGTTTTTCTCTTAAATGAATCTGGACACTGGAACTTAGGCCTTTTATATATTA
130 GGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40295657 ATACTTGTTTTATGACACAAAGAGCCTATTGGTACAGTGGTAGGTTCATTGGGCCTTACCGTGTA
194 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* ** * * * *
40295722 CTGCAACGTGTGGGACTTATCGTTTATAAACTAGGGTTTCCTCTGAAATTAGATCAGATTCATGA
259 CTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
*
40295787 TATGTTTCACGTCTCCATGCTAAGG-AGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
324 TGTGTTTCACGTCTCCATGCTAAGGCA-TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * *
40295851 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAAGAGAAGCCAGTGCGGATTTTGGAACC-TAAGG
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGG-ACCGTGAGG
* * * *
40295915 TGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTTGCGTAATCGCAGTTTAGAA
452 TGAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * * * *
40295980 GAGGCGACATGGGAACCTGAGGAGGCGATGCGACAACAAGACCCTCATCTTTTCTGACCAGGTAA
517 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* * * * *
40296045 ATTTGGATGCTGAAATTTTGTTGAAGTGGGTAGAAT
582 ATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40296081 TATAACGCCCCAAAAGTTT-AGTCTCTAATTTTTGCATCTTTTGACACGAATTACTTGTTTCCTT
1 TGTAACGCCCCAAAA-TTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTT
* * ** *
40296145 TAATGGCTAAGTGATTTGGGTGTTTGTCTGAGTGTTTGAGAAGCCTGGGTTCATGTCTT-G-C--
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
*
40296206 --C-C-----T-GTTTTTCTCTTAAATGAATCTTGACACTGGCACTTAGGCCTTTTATATATTAA
130 GGCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40296262 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTATCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40296327 TGCAACGTGTGGGACCGATCGCTTATAAACTAGACTTTCCTCTGAAATTAGACCAGATTCATGAT
260 TGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40296392 GTGTTTCAAGTCTCCATGCTAAGGCGTTATCGCTCTGACCCCACTCACATAGTACCATTTGAGGA
325 GTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * *
40296457 GATTGAGGTTAGGATAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGCGATGA
390 GATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
* * *
40296522 AGTTAGTGAGGAAGAAATCTATTCCATTCGTCAAAGTTCTTTGGCGTAATCACCA-TTCAGAAGA
455 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGA
* * * ** * *
40296586 AGCCACATGGGAACCCAAAGAGGCGATGCGACAGCAATGTTGGATCGCCGGCATC-CCTATGGCG
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAA---T--A-C-CC-TCATCTTTTCTGAC-
* * * * * * * ** * * *
40296650 CAGCGAAAAATAAAAATCCGACGATCCTAACCAGGGATCCATGTGTGAGGAA-CGAATCGGGG
575 CAG-G-----T-AAATTTCGA-G--GCTGA--A---AT---TTTGTTA--AAGGGGGTAGAGT
* * *** * ** *
40296712 TGAAAGAGGTTTCAAAA-TT-A--C-CTAATGTTTATTCA-GAGTAGACAACAACACCTCAACAA
1 TG-TA-ACGCCCCAAAATTTAAGTCTCTAAT-TTT-TGCATGTTTTGAC-ACAA-A--T------
* * * * * ** * ** * * ** * **
40296771 CGAGTAGCCTGATCTGCTGTCGAA--CCAAACCGCAATCT-ATTGTGATTTTGGCCTCTACGTA-
52 ----T-GCTTG-TTTGCT-T-TAATGGCTAA--GTGATTTGGGTGTG-TATGGGAGTGTTTG-AG
* ** * *** ***** *
40296832 ATCCACCCAGTTGACTACGAACG-GAAGGAATCCCCAAAACAATTTTGAGAGTTATTTTTCTTTG
105 A---AGCC---TGGGTTC-AA-GTCTTGG---CCTTGGCACAATTTT---AGTT-TTTCTC-TT-
* * * * * * ** **** *
40296896 AAGGCTGCTAGACTCAAACAAAGAAAAAC-GGGATTATATATATCCTTTTAT-T-TTAGGGTTTT
153 AA--ATG--A-A-T----C--TG-GACACTGGCA--CT-TA-GGCCTTTTATATATTAATACTTG
* * * * *** ** * ** * ***
40296958 TTTTAAGAATTAAATAAATATAATAATATTTTAATCCAAAAATTATA-ATTACATT--AATTATA
201 TTTT----ATGACA-CAA-A-GAGCCTA--TTGGTCC---AGTGGTAGGTT-CATTGGGCCT-TA
*** * * * * *** ** * ** * * * *
40297020 ATATAAGTTCGGTAAACCATATATTTATTTGAACTCTTATGCTAACCAAATTCATGTCCTCACTA
252 CCGT--GTACTG-CAA-CATGT-GGGA-CCGATCGATTAT--AAACTAGAGT--T-TCCT--CTA
* * * * ** * ** **
40297085 TACA-TACAACA-ACCTTGTACATAATGTGTTGGAAATTTGAT-TACCGAATTAAATTAATTCTA
304 -AAATTAGACCAGA---T-T-CATGATGTGTT--TCA--CG-TCT-CC--A-T--GCTAAGGC--
*** * * *** ** * * ** *
40297147 TAATTAATTTAAATTTAAGCGACCCCAAAAACA-A-TACCAACT-ATG-G-TTTA--TTCCG-TT
350 --ATT-A--TCGCTCT----GATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCTA
* * * * * * * * * * * * *
40297204 CATTTCAACTATAG-GGTGTGACCCTA-T--AGGTTCTTGTAACGTTAGCAGT-AA--CACT-A-
406 GATCTGACCT-TCGAGGAG-AAGCC-AGTGCAGATT-TTGGACCGTGAG--GTGAAGTTACTGAG
* * * * * ** * ** ** * *
40297260 GAACG-ATTCTAATGC--TA-TGAACAATG-AGTGGC---ATCTAGCAGTGCATCA-TTGCTACC
465 GAA-GAAATCTATTCCATTAGTCAA-AGTGCTTTGGCGTAATC-A-CAGTTCAGAAGAAGCCACG
** * * * * * *** * * * *
40297316 TAAG-TCAC-AAGAGATCATGATTCGACA-TAACCTTTTTATGATTAACCTTTTATG--CA-AT-
526 TGGGAACCCGAAGAG-GC--GATGCGACAGCAA------TA-CCCTCATCTTTTCTGACCAGGTA
* * ** * * *** * *
40297374 AATCCTT-AAGTCCT-TTATCTCTGGATTGGACACAAGTCATGGAAT
581 AAT--TTCGAG-GCTGAAAT-T-TTG-TT--A-A-AGGGGGTAGAGT
* ****** * * ** * **
40297419 AGTCACACTTGCATTGTCCATTCCATGT-TCCTTGATATCTTAAGCA-GACTACGACATACAAA-
1 TGT-A-AC--GC-CCCAAAATT-TAAGTCT-C-T-A-AT-TTTTGCATG-TTTTGAC--ACAAAT
** * * ** * * * * * ***
40297481 T--AAGTATGACATCTAATATC-GACTTATTTGAGCATG-GCTAT-GCA-T-TTCT-AGTCTCAC
52 TGCTTGTTTG-C-TTTAATGGCTAAGTGATTTG-G-GTGTG-TATGGGAGTGTT-TGAGAAGC-C
*** ** * ** * * *** * * * *
40297538 T-TAATCAAGTGGCCTAAG-ATATTACTCCCATTATGTAGGAGGGACTTATCCTATATCGACCAA
110 TGGGTTCAAGT---CTTGGCCT-TGGC-ACAATT-T-T---A-GTTTTTCTCTTAAAT-GA--AT
*** * * * ** ** * **
40297601 CCATATCCCT--CTACATA-G-ATTGTGGTATATCCA-ACATCAGTCTTTATAGA-ACAACCAG-
161 CTGGA-CACTGGC-ACTTAGGCCTT-TTATATATTAATAC-T-TGT-TTTAT-GACACAAAGAGC
* * * * * **** * * **
40297659 TTATAGTGTAC-GT-TTAACTGTATCAAAATATACAACTCA-CGATGT--TAGGATTATGAT--G
219 CTATTG-GTCCAGTGGT-A-GGT-TC---AT-TGGGCCTTACCG-TGTACT-GCAACATG-TGGG
* ** * * ** *
40297717 ATCTCAAGTCTGAGGATCATA-TA-AATATTAATCATTATGAGTAATGTCGTGA-CA-ATTACAT
273 A-C-CGA-TC-GATTAT-AAACTAGAGT-TTCCTC--TA--A--AAT-T--AGACCAGATT-CAT
* ** * * * * * * * * * *
40297778 -A-ATAATCCAAGAAACATACTCATAACGGGTCAGTCCAATAT-G-T-TGTTCTCTAACACACAT
322 GATGTGTTTCACG--TC-T-C-CAT----GCTAAG-GCATTATCGCTCTGATC-C-CACTCACAT
* * * * ** * * ** ** * * * *
40297838 A-T-TCA-TGTAATGA-TTCTGACATT---CCATATCAATGACAACTCTTTATCATCAATCAACT
375 AGTACCAGT-TGAGGAGAT-TGAGGTTAGGCTAGATC--TGAC--CT-TCGAGGA-GAAGCCAGT
* * * **** * **
40297896 ACACGTTAGTCTTAATGCATTATCGTTGTCCTATCCAACAATAATACTTGACTAAGGAAAT-T-T
432 GCA-G--A-T-TT--TG---GACCG-TG----AGGTGA-AGT--TAC-TGAGGAA-GAAATCTAT
** * * * ** * * * ** * **
40297959 TAAGAATAATCATATTA-TTCTCAGGACATTATTATAAAACAGTTTATTTATATA--CACAGAAA
477 T-CCATTAGTCA-A--AGTGCTTTGG-C-GTA--AT--CACAGTTCA-GAAGA-AGCCAC-G-TG
* * * ** * * * * * ** * * * *
40298021 TGAAACTGAA-A--TAAT--AATAG-TA-ACGCCTTAT-ATTAATAAACATGATAAA--TC-AAG
528 GGAACCCGAAGAGGCGATGCGACAGCAATAC-CCTCATCTTTTCTGACCA-GGTAAATTTCGAGG
* * *****
40298075 -T---ATGTTATTACAACCATCTCATGA-T
591 CTGAAATTTTGTTA-AAGGGGGT-A-GAGT
** ** * * * **** *** * * * **
40298100 TGATATTTG-GGCATACTCTAACAAGC-AATACCCT-CATCTTTTCTGACCAGGTAAATTTCGAG
1 TG-TA-ACGCCCCAAAATTTAAGTCTCTAAT-TTTTGCAT-GTTT-TGA-CA--CAAATTGCTTG
** * *** * * * **** *** **
40298162 GCTGATATT--TTTTTAAAG-G----GGGTAGAGT-T-GTAATGCCCCA-AAATTTAAGTCTCTA
58 TTTGCT-TTAATGGCT-AAGTGATTTGGGT-GTGTATGGGAGTGTTTGAGAAGCCTGGGT-TC-A
* * ** * * ** ** ** ***
40298217 ATTTTTGCATGTTTTGACACAAAATTCTT-GTTTGT-T-TT-AATGGCTAAGTGA-TTTGGGTGT
118 AGTCTTG---GCCTTGGCAC--AATT-TTAGTTTTTCTCTTAAATGAATCTG-GACACTGGCACT
** * * * ** * * * * * * ** * ** *
40298277 GTATGGGAGTGTT-T-GA-GAAGCCTGGGTTCAAGTCTTGCCCCAG-GCACAATT--TTTAGTTT
176 -TA--GGCCTTTTATATATTAATACTTGTTTTATGAC---ACAAAGAGC-CTATTGGTCCAG-TG
* *** * * ** * * * * ** *
40298336 TTCTCTTAAAT--G-AAT-CTG-GACACTGGC-AC-T-TAGG-CC-TTTTATATATTAATACTTG
233 GTAGGTTCATTGGGCCTTACCGTG-TACT-GCAACATGTGGGACCGATCGAT-TA-TAA-ACTAG
** * * * * * *
40298391 TTTTATGACACAAAGAATCTATTGGTCCAGTGGTAGGTTCAT--TGGGCCTT-ACCTTGTACTGC
293 AGTT-T-CCTCTAA-AAT-TA---GACCA---G-A--TTCATGATGTG-TTTCA-C--GT-CT-C
* * * * ** ** * * * * * *
40298453 AACGTGTGCGACTGATCACTTATAAACTAGGGTTTCCC-CTGAAATTAG-AACAGATTCA--TGA
339 --C--ATGCTA-AG-GCA-TTAT-CGCT-CTG-ATCCCACTCACA-TAGTACCAG-TTGAGGAGA
* * * ** * * **** * * * *
40298514 -TGTGTTTCACGTCTCCATGCTAAGGCCTT--ATTGCTCTGATCACGCT-CACA--TAGTACC-T
392 TTGAGGTT-A-GGCTAGAT-CT--GACCTTCGA-GGAGAAG-CCA-G-TGCAGATTTTGGACCGT
* ** * * * **
40298572 --GTTGAAGAGATTGAGGTTAGGACAGATCTGACCTTCGAGGAG--AAGCTAGTGCGGATTTTGG
448 GAGGTGAAGTTACTGAGG--AAGA-A-ATCT-A--TTCCATTAGTCAA---AGTGC----TTTGG
* * * * ** **** * * * * *
40298633 ACCGTGAGGTGA-AGTTACTGAGGAAGAAATCTATTTCATTACTCAAAGTGGTTTTGCATAATC-
499 --CGT-A-ATCACAGTT-C--A-GAAG-AAGCCACGTGGGAACCCGAAGAGG---CG-AT--GCG
* * * * ***** * ** ** * * * *
40298696 ACAGTTCAGAAGAGGCCACGTGGGAACCCGAGGAGG-CGA-TGCGACAGCAAGACCCTCATCTTT
549 ACAG--C--AATA-CCCTCAT-CTTTTCTGACCAGGTAAATTTCGA-GGC-TGA----AAT-TTT
* *** *
40298759 -TCT-GACCAGGTA-AAT
601 GT-TAAAGGGGGTAGAGT
* * * * * *** ** ** * * *
40298774 TTTGA-G-GCTAAAATTTTGTTGAATTGGGTAGAGTTGTAACGCCCTAAAATTTAAGTCTCTAAT
1 TGTAACGCCCCAAAA---T-TT-AAGTCTCTA-A-TT-T-TTG--C--ATGTTT-TGACAC-AA-
* * * * * * *
40298837 TTTTGCATGTTTTGACACAAATGACATGTTTACTTTAATGGCTAAGTGATTTGGGTGTTTGTGGG
50 -ATTGCTTG-TTTG---C--TTTA-ATG---GC--T-A------AGTGATTTGGGTGTGTATGGG
*
40298902 AGTGTTTGAGAAGCTTGGGTTCAAGTCTTGGCCTTGGCACAATTTTAGGTTTTTCTCTTAAATGA
95 AGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTA-GTTTTTCTCTTAAATGA
* * *
40298967 ATCTTGACAGTGGCACTTAGGCATTTTATATATTAATACTTGTTTTATGACACAATA-AGCCTAT
159 ATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAA-AGAGCCTAT
* * * *
40299031 TGGTCCAGTGGTAAGTTCATTGGGCCTTATCGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
223 TGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACATGTGGGACCGATCGATTATAA
40299096 ACTAGAGTTAT-CTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCAT
288 ACTAGAGTT-TCCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCAT
* * * *
40299160 TATTGCTATGACCCCAC-CACATAGTACCAGTTGAGGAGTTTGAGGTTAGGC-ATGATCTGACCT
352 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCTA-GATCTGACCT
* * * * * *
40299223 TTGAGGAGAAGCTAGTGCGGGTATTGGACTGTGAGGT-AAGGTTACTGAGGAAGAAATCTATTCC
416 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAA-GTTACTGAGGAAGAAATCTATTCC
* * * * *
40299287 ATTCGTTAAAGTGCTTTGGCGTAATCACCGTTCAGAAGAAGCCACGTGGGAACCCAAAGAAGCGA
480 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * *
40299352 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGCTGATATTTTTTTAAAGGG
545 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGG
40299417 GGTAGAGT
610 GGTAGAGT
* * *
40299425 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAAATGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * *
40299490 AATGGCTAAGTGATTTGGGTGTGTCTGGGAGTGTTGGAGAAGCCTGGGTTCAAGTCTTGCGCC-A
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG-GCCTT
*
40299554 GGCACAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCACTTAGGCCTTTTATATATTA
130 GGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40299619 ATCCTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
194 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * *
40299684 CTGCAACGTGTGGGACTGATC-ACTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATG
259 CTGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
**
40299748 ATGTGTTTCACGTCTCCATGCTAAGGTGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
323 ATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* *
40299813 GAGATTGAGGTTAGGCTAGATCTGACCTTCAAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGT
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* ** **
40299878 GAAGTTACTGAGGAATAAATCTATTCCATTAGTCAAAGTGCTTTTACGTAATCGTAGTTCAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * * * *
40299943 AGGCGACGTGGGAACCC-AAGGAGGCGATGCGACAGTAAGACCCTCATTTTTTCTGACCAGGAAA
518 AAGCCACGTGGGAACCCGAA-GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* * * *
40300007 ATTTTGAGGCTAAAATTTTTTTAAAAGGGGTAGAGT
582 ATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40300043 TGTAATGCTCCAAAATTTAAATCTCTAATTTTTGCATGTTTTGACACAAAATGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * **
40300108 AATGGCTAAGTGATATGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGCCCCAG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40300173 GCACAATTTTTAG-TTTTCTCTTAAATGAATCTGAACACTGGCACTTAGGCCTTTTATATTTTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
*
40300237 TCCTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40300302 TGCAACGTGTGGGACTGATC-ACTTATAAGCTAGGGTTTCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGATCGA-TTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * * * *
40300366 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGTTCTGATCACGCTGACATAGTACCTGTTGAAG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* *
40300431 AGATTGAGGTTAGGAC-AGATCTGACCTTCGAGGAGAAGCTAGTGCGGATTTTGGACCGTGAGGT
389 AGATTGAGGTTAGG-CTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* * * * *
40300495 TAAGTTACTAAGGAAAAAATCTATTCCATTAGTCAAAGTACTTTGGCGTAATCACAATTCAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * * *
40300560 AAGCCACGTGGGAACCCAAAGAGGTGATGCAACA-AAATAACCCTCATCTTTTCTGACCAGGAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAAT-ACCCTCATCTTTTCTGACCAGGTAA
*
40300624 ATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
582 ATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * *
40300660 TGTAATGCTCCAAAATTTAATTCTCTAATTTTTGCATGTTTTGACACAAAATT-CTTTTTTTCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGCTT
*
40300724 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCTTGGGTTCAAGTCTT-GCCTC
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCT-
* *
40300788 TGACACAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCACTTAGGCCTTTTATATATT
129 TGGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* *
40300853 AATACTTGTTTCATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGT
193 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* ** * * * *
40300918 ACTGCAACGTGTGGGATTGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACTAGATTCATG
258 ACTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
*
40300983 ATGTGTTTCACGTCTCCATGATAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
323 ATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * * *
40301048 GAGATTGAGGTTAGGCTAGATCTGACCTTCAAAGAGAAGCTAGTGCATATTTTGTACCGTGAGGT
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* * * *
40301113 GAAGTTACTAAGTAAGAAATCTATTCCATTAGCCAAAGTGCTTTGGCGTAATCACAGTTTAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * *
40301178 AAACCACGTGGGAACCCGAAGATGCGATGCGACAGCAATACCCTCAAT-TTTT-TTACCAGGAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTC-ATCTTTTCTGACCAGGTAA
*
40301241 ATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
582 ATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * * * * **
40301277 TGTAATGCTCCAAAATTTAATTCTCTAATTTTTCCATGTTTGGACACAAAATT-CTTATTTATTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGCTT
* * *
40301341 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGACTTGCCCAT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
*
40301406 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCTTTTTATATATTA
130 GGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40301471 ATACTTGTTTTATGACACAAAGAGCCTATTGGTACAGTGGTAGGTTCATTGGGCCTTACCGTGTA
194 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * * *
40301536 CTGCAACGTGTGGGACTGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGA
259 CTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * *
40301601 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGAACCCACTCACATAATACCAGTTGAGG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * *
40301666 AGATTGAGGTTAGGCTAGATCTGACCTTTGAGGAGAAGCTAGTGC-GAATTTTAGACCGTGAGGT
389 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGT
* * * * * * ** *
40301730 GAAGTTACTTAAGAAGGAATCTATTCCGTTAGTCAAAGAGTTTTTTCGTAATCACAGTTTAGAAG
453 GAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * * * *
40301795 AGGCCACGTGGGAACCCGAGGAGGCAATGCGACAGCAAGACCCTCATCTTTTCTGACTAGTTAAA
518 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
* * * *
40301860 TTTGGAGGCTGAAATTTTTTTGAAGTGGGTAGAGT
583 TTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* *
40301895 TGTAAC-CCCCAAAATTTAAGTCTTTAATTTTTGCACGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * * * * * *
40301959 AAAGACTAAGTGATTTGGGTGTGTGTGGGAGTATTTTAGAAGCCTGGATTCAAGTCCTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
*
40302024 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * *
40302089 TACTTGTTTTCTGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTTGGTCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * *
40302154 TGCAACATGTGGGACC-ATTCGCTTATAAACGAGAGTTGCCTCTAAAATTAGACCAGATTCATGA
260 TGCAACATGTGGGACCGA-TCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * *
40302218 TGTGTTTCACGCCTCTATGCTAAGGCGTTATCGGTCTGATCCCACTAACATAGTACCAGTTGAGG
324 TGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * * *
40302283 AGATTGTGGTTAGGCCAGATCTGACCTTCGATGAGAATCCAGTGCGGATTTTGGACCGTGAGGTG
389 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTG
*
40302348 AAGTTACTGA-G--G-----------A--AG---AAGTGCTTTGGCGTAATCACAGTTCAGAGGA
454 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * *
40302394 AGCCACGTGGGAACCCGAAGAGGCAATGCAACAGCAATACCCTCATCTTTTCTGACCAAGTAAAT
519 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * *
40302459 TTCGAGGCTAAAATTTTTTTAAATGGGGTAGAGT
584 TTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * * *
40302493 TGTAACGCCCCAAAACTTAAATTTCTAATTTTTGCATGTTTTGACACTAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * * *
40302558 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTGGAGAAGCCTTGGTTCAAGTCATGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * **
40302623 GCTCAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTGAGGTTTTTTATATATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40302688 TACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGTTGATTGGGTCC-TACCGTGTA
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGG-CCTTACCGTGTA
* ** *
40302752 CTGCAACGTGTGGGAATGATCGCATT-TAAACTAGAGCTTT-CTCTGAAATTAGACCAGATTCAT
259 CTGCAACATGTGGGACCGATCG-ATTATAAACTAGAG-TTTCCTCTAAAATTAGACCAGATTCAT
* * * * *
40302815 GATGTGTTTCACGTCTCCATGATAAGGCGTTATCGCTCTAATCCCACTCACATAGTACCGGTTAA
322 GATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * * * *
40302880 GGAGATTGAGGTTAGGCCAGATCTGACCATCGACGAGAAGCCAATGCAAATTTTGGACCATGAGG
387 GGAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * *
40302945 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTGAAAAGTGTTTTGGCGTAATCACAGTTCAGA
452 TGAAGTTACTGAGGAAGAAATCTATTCCATTAGT-CAAAGTGCTTTGGCGTAATCACAGTTCAGA
** * *
40303010 ATCAGCCACGTGGCAACCCGAAGAGGCGATGCGACAAG-AATACCCTCATCTTTTTTGACCAGGT
516 AGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAC-AGCAATACCCTCATCTTTTCTGACCAGGT
* *
40303074 AAATTTCGAGGCTAAAATTTTTTTAAAGGGGGTAGAGT
580 AAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* *
40303112 TGTAACGCCGCAATATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
* * ** *
40303177 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTGGAGAAGCCTTCGTTCAAGTCGTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * **
40303242 GCTCAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTGAGGTTTTTTATATATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40303307 TACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGTTGATTGGGTCC-TACCGTGTA
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGG-CCTTACCGTGTA
* ** * ** * * * *
40303371 CTGCAACGTGTGGGAATGATCACATT-TAAACTAGACCTACCGTGT---ACT-G--CA-A--CGT
259 CTGCAACATGTGGGACCGATC-GATTATAAACTAGAGTTTCC-TCTAAAATTAGACCAGATTCAT
* ** * ** ** * * * * * * *
40303426 G-TGGGAATGATCG-CATTTAAACT-AGAGCTTTCTCTGAAAT-TAGA-CCAGATTCATGATGTG
322 GATGTGTTTCA-CGTC-TCCATGCTAAG-GCATTATC-G--CTCT-GATCC-CACTCA-CAT-AG
** * * * * * * *
40303486 TTTCACGTCTCCATGACA-AG-GTGTTATTGCTCTA-ATCCCACTCACATAGTACTGGTTAAGGA
377 TACCA-GT-T-GAGGAGATTGAG-GTTA--G-GCTAGAT----CTGACCT--T-C--G---AGGA
** * * * * * * * * *** *
40303548 GATTGAGGTTAG-GCCAGA-TCT-GACCATCGACGAGAAG---C-CAGTGCAG-ATTTTGGACCG
423 GA---A-GCCAGTG-CAGATTTTGGACCGT-GAGGTGAAGTTACTGAG-GAAGAAATCTATTCCA
* * * ** * * ***
40303605 TGAGGT-TAAGTTACTGAGGAAGAAATCTATTCCA-TT-AGTGAA-AAGTGTTC-TGGCGTAATC
481 TTA-GTCAAAG-TGCTTTGG-CGTAATC-A---CAGTTCA--GAAGAAG-CCACGTGG-G-AA-C
* *** *** * * * *** * ** *
40303665 ACAGTTCAGAATAAGCCACGTGGCAAT-CCGAAGAGGCGATGC-GA-CAGGAATACCCTCATCTT
533 -CCGAAGAGGCGATGCGAC--AGCAATACC-CTCA-TCTTTTCTGACCAGG--TA-----A----
* * * ** * *
40303727 TTTTGACCAGG-T-AAATTTCG----AGGCTG-AAATTT
582 ATTT--CGAGGCTGAAATTTTGTTAAAGGGGGTAGA-GT
* **** * * * * * * *** **
40303759 TGTTAAAGGGGGTAGAGTTGTAACG-CCCCAATATTTAAGTC-TCTAATTT-TTGCAGGTTTTGA
1 TG-T-AACGCCCCAAAATT-TAA-GTCTCTAAT-TTT-TG-CATGT--TTTGACACA-AATT-G-
* **
40303821 CACAAATTGCTTATTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGTAGTGTTCAAGAAGCC
54 --C---TTG----TTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCC
* * *
40303886 TCGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTTTTAAATGAATCTGGACACTGGCA
110 TGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCA
** *
40303951 CTTAGGTTTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGT
174 CTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGT
* * * * * * *
40304016 TGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACTGATCGATTATAAACTATAGTTTTCTCTG
239 TCATTGGGCCTTACCGTGTACTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTA
* * *
40304081 AAATTAGACCAGATTCATGATTTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTAATCCCAC
304 AAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCAC
* * * * *
40304146 TCACATAGTACCGGTTAAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGACGTGAAGCCAGTGC
369 TCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGC
* * * * * * *
40304211 AGATTTTGGACCATGAGGTTAAGTTACTGAGGAAGAAATCTGTTCCGTTAGTGAAACTTGCTTTT
434 AGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAA-GTGCTTTG
* * * **
40304276 GCGTAATCATAGTTCAGAATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAATAATACCCTC
498 GCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTC
* * * *
40304341 ATC-CTT-T---C---T-AA---CGA-G-TTAAATTTCG----A---GGTCGAGT
563 ATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
* * *
40304375 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTCAAAAAAATTTGCTTGTTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAA-TTGCTTGTTTGCTT
* ** * *
40304440 TAATGGCTAAGTGATTTCGGTGTGTATGAAAGTGTTTGAGAAGCCTAGGTTCAAGTTTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * *
40304505 GGTACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATTGACACTTAGGCCTTTTATATATTA
130 GGCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* *
40304570 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGACCTTACCGTGTT
194 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
** * * * * * * * *
40304635 CTAAAACGTGTGGGACCAATCGCTTATAAACTTGAGTTGCCTTTGAAATTAGACAAGATTCATGA
259 CTGCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* *
40304700 TGTGTTTCATGT-TCCCATGCTAAGGCATTATCGCTCTGATCCCACTCACAGAGTACCAGTTGAG
324 TGTGTTTCACGTCT-CCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * *
40304764 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAA-CACTGTGCAGATTTTAGACCGTGGGG
388 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGC-CAGTGCAGATTTTGGACCGTGAGG
* * *
40304828 TTAAGTTACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAA
452 TGAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * *
40304893 GAACCCACGTGGGAAACCGAAGAGGCGATGGGACAGCAATACCCTCATCTTTTCTAACCAGGTAA
517 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* * *
40304958 ATTTTGAGGTTGAAATTTTGTTAAAGCGGGTAGAGT
582 ATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
** * * * *
40304994 TCCAACGCCCCAAAATTTAAGTTTCTAATTTTTGCATGTTTAGACACAAATTGTTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
*
40305059 AATGGCTAAGTGATTTGGGTGTGTATGAGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
**
40305124 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTAACACTTAGGCCTTTTATATATTAA
131 GCACAA-TTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * *
40305189 TACTTGTTTTATAACACAAAGAGCCTATTGGTTCAGTGGTAGATTCATTGGGCCTTACCGTGTAC
195 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * * * *
40305254 TGCAACGTGTTGGACCAATCGCA-TATAAACTTGAGTTGCCTCTGAAATTTA-ACTAGATTCATG
260 TGCAACATGTGGGACCGATCG-ATTATAAACTAGAGTTTCCTCT-AAAATTAGACCAGATTCATG
* * *
40305317 ATGTGTTTCACGTCCCCATGCTAAGGCATTATCACTCTGATCCCACTCACATACTACCA
323 ATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCA
40305376 CTAAGGAAGC
Statistics
Matches: 13983, Mismatches: 2430, Indels: 1767
0.77 0.13 0.10
Matches are distributed among these distances:
598 185 0.01
599 783 0.06
600 8 0.00
601 2 0.00
602 1 0.00
603 123 0.01
604 1317 0.09
605 8 0.00
606 3 0.00
607 2 0.00
609 9 0.00
610 17 0.00
611 31 0.00
612 20 0.00
613 14 0.00
614 295 0.02
615 268 0.02
616 1346 0.10
617 3580 0.26
618 1628 0.12
619 1397 0.10
620 256 0.02
621 777 0.06
622 4 0.00
623 1 0.00
624 6 0.00
626 2 0.00
627 3 0.00
628 6 0.00
629 12 0.00
630 15 0.00
631 21 0.00
632 19 0.00
633 9 0.00
634 8 0.00
635 21 0.00
636 16 0.00
637 2 0.00
638 3 0.00
639 16 0.00
640 14 0.00
641 9 0.00
642 9 0.00
643 8 0.00
644 9 0.00
645 19 0.00
646 16 0.00
647 32 0.00
648 24 0.00
649 47 0.00
650 34 0.00
651 27 0.00
652 23 0.00
653 35 0.00
654 17 0.00
655 21 0.00
656 18 0.00
657 15 0.00
658 10 0.00
659 9 0.00
660 27 0.00
661 11 0.00
662 21 0.00
663 15 0.00
664 28 0.00
665 252 0.02
666 19 0.00
667 15 0.00
668 12 0.00
669 20 0.00
670 21 0.00
671 32 0.00
672 18 0.00
673 42 0.00
674 28 0.00
675 12 0.00
676 25 0.00
677 17 0.00
678 13 0.00
679 10 0.00
680 14 0.00
681 21 0.00
682 17 0.00
683 18 0.00
684 28 0.00
685 20 0.00
686 11 0.00
687 7 0.00
688 10 0.00
689 11 0.00
690 21 0.00
691 8 0.00
692 15 0.00
693 9 0.00
694 14 0.00
695 7 0.00
696 12 0.00
697 16 0.00
698 4 0.00
699 13 0.00
700 10 0.00
701 14 0.00
702 16 0.00
703 23 0.00
704 26 0.00
705 24 0.00
706 16 0.00
707 39 0.00
708 18 0.00
709 20 0.00
710 23 0.00
711 11 0.00
712 9 0.00
713 5 0.00
714 7 0.00
715 2 0.00
716 2 0.00
717 2 0.00
718 14 0.00
719 8 0.00
720 7 0.00
721 5 0.00
722 10 0.00
723 18 0.00
724 14 0.00
725 8 0.00
726 7 0.00
728 14 0.00
729 2 0.00
730 5 0.00
731 18 0.00
732 13 0.00
733 3 0.00
734 3 0.00
735 4 0.00
736 2 0.00
737 6 0.00
738 1 0.00
739 10 0.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (617 bp):
TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
GCACAATTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAAT
ACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT
GCAACATGTGGGACCGATCGATTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGATG
TGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAG
ATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAA
GTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAG
CCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTT
CGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
Found at i:40303427 original size:46 final size:46
Alignment explanation
Indices: 40303360--40303451 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
40303350 TTGATTGGGT
40303360 CCTACCGTGTACTGCAACGTGTGGGAATGATCACATTTAAACTAGA
1 CCTACCGTGTACTGCAACGTGTGGGAATGATCACATTTAAACTAGA
*
40303406 CCTACCGTGTACTGCAACGTGTGGGAATGATCGCATTTAAACTAGA
1 CCTACCGTGTACTGCAACGTGTGGGAATGATCACATTTAAACTAGA
40303452 GCTTTCTCTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (46 bp):
CCTACCGTGTACTGCAACGTGTGGGAATGATCACATTTAAACTAGA
Found at i:40305854 original size:540 final size:540
Alignment explanation
Indices: 40304835--40305915 Score: 1657
Period size: 540 Copynumber: 2.0 Consensus size: 540
40304825 GGGTTAAGTT
40304835 ACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAGAACCCA
1 ACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAGAACCCA
* * * *
40304900 CGTGGGAAACCGAAGAGGCGATGGGACAGCAATACCCTCATCTTTTCTAACCAGGTAAATTTTGA
66 CATGGGAAACCGAAGAGGCGATGCGACAGCAATACCCTCACCCTTTCTAACCAGGTAAATTTTGA
* **
40304965 GGTTGAAATTTTGTTAAAGCGGGTAGAGTTCCAACGCCCCAAAATTTAAGTTTCTAATTTTTGCA
131 GGTCGAAATTTTGTTAAAGCGGGTAGAGTTCCAACGCCCCAAAATTTAAGTCACTAATTTTTGCA
* * * **
40305030 TGTTTAGACACAAATTGTTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGTATGAGAGTGTTT
196 TGTTTAGACACAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTCAGTGTGTATGAGAGTGTTT
*
40305095 GAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGA
261 GAGAAGCCTGGGTTCAAGTCTTGGCCTTCGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGA
* *
40305160 CACTAACACTTAGGCCTTTTATATATTAATACTTGTTTTATAACACAAAGAGCCTATTGGTTCAG
326 CACTAACACATAGGCCTTTTATATATTAATACTTGTTTTATAACACAAAGAGCCTATTGGTTCAC
* *
40305225 TGGTAGATTCATTGGGCCTTACCGTGTACTGCAACGTGTTGGACCAATCGCATATAAACTTGAGT
391 TGGTAGATTCATTGGGCCTTACCGTGTACTGCAACATGTGGGACCAATCGCATATAAACTTGAGT
* * *
40305290 TGCCTCTGAAATTTAACTAGATTCATGATGTGTTTCACGTCCCCATGCTAAGGCATTATCACTCT
456 TGCCTCTGAAATTTAACCAGATTCATGATGTGTTTCACGTCCCCAGGCTAACGCATTATCACTCT
40305355 GATCCCACTCACATACTACC
521 GATCCCACTCACATACTACC
* *
40305375 ACTAAGGAAGCAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAGAAGCCA
1 ACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAGAACCCA
* *
40305440 CATGGG-AACCTGAAGAGGCGATGCGATAGCAATACCCTCACCCTTTCTAACCATGTAAATTTTG
66 CATGGGAAACC-GAAGAGGCGATGCGACAGCAATACCCTCACCCTTTCTAACCAGGTAAATTTTG
* * ** *
40305504 AGGTCGAAATTTTGTTAATGGGGGTAGAGTTGTAACGCCCCCAAATTTAAGTCACTAATTTTTGC
130 AGGTCGAAATTTTGTTAAAGCGGGTAGAGTTCCAACGCCCCAAAATTTAAGTCACTAATTTTTGC
* * *
40305569 ATGTTTTGACAGAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTCAGTGTGTATGGGAGTGTT
195 ATGTTTAGACACAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTCAGTGTGTATGAGAGTGTT
* *
40305634 TGAGAAGCCTGGGTTCAGGTCTTGGCCTTCGCACAATTTTTAGTTTTTCTCTTAAATGAATCTTG
260 TGAGAAGCCTGGGTTCAAGTCTTGGCCTTCGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGG
* ** *
40305699 ACACTGACACATAGGTGTTTTAT-TGATTAATACTTGTTTTATGACACAAAGAGCCTATTGG-TC
325 ACACTAACACATAGGCCTTTTATAT-ATTAATACTTGTTTTATAACACAAAGAGCCTATTGGTTC
* * * **
40305762 TACTGGTAGGTTCATTGGGCCTTTCTGTGTACTGCAACATGTGGGACTGATCGCATATAAACTTG
389 -ACTGGTAGATTCATTGGGCCTTACCGTGTACTGCAACATGTGGGACCAATCGCATATAAACTTG
* * * * *
40305827 AGTTTCCTCTGAAA-TTAGACCAGATTCATGATGTGTTTCATGTCTCCAGGCTAACGCGTTATCG
453 AGTTGCCTCTGAAATTTA-ACCAGATTCATGATGTGTTTCACGTCCCCAGGCTAACGCATTATCA
*
40305891 CTCTGATCCCACTCACATAGTACC
517 CTCTGATCCCACTCACATACTACC
40305915 A
1 A
40305916 GTTGAGGAGA
Statistics
Matches: 488, Mismatches: 49, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
539 10 0.02
540 478 0.98
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (540 bp):
ACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAGAACCCA
CATGGGAAACCGAAGAGGCGATGCGACAGCAATACCCTCACCCTTTCTAACCAGGTAAATTTTGA
GGTCGAAATTTTGTTAAAGCGGGTAGAGTTCCAACGCCCCAAAATTTAAGTCACTAATTTTTGCA
TGTTTAGACACAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTCAGTGTGTATGAGAGTGTTT
GAGAAGCCTGGGTTCAAGTCTTGGCCTTCGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGA
CACTAACACATAGGCCTTTTATATATTAATACTTGTTTTATAACACAAAGAGCCTATTGGTTCAC
TGGTAGATTCATTGGGCCTTACCGTGTACTGCAACATGTGGGACCAATCGCATATAAACTTGAGT
TGCCTCTGAAATTTAACCAGATTCATGATGTGTTTCACGTCCCCAGGCTAACGCATTATCACTCT
GATCCCACTCACATACTACC
Found at i:40306910 original size:260 final size:259
Alignment explanation
Indices: 40306442--40306954 Score: 753
Period size: 260 Copynumber: 2.0 Consensus size: 259
40306432 ACTTGAGTTT
*
40306442 CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
* * * ** *
40306507 TCACGCACACGTAGTACCTGTTGAAGAGATTGAGGTTCGACCAAATCTGACCTTTTAGGAGGAGC
66 TCACGCACAAGTAATACATG-TGAAGAGATTGAGGTTCGACCAAATCTGACCTTCGAGGAGAAGC
*
40306572 CAGTGCAGATTTTGTACCGTAAGGTTAAGGTACTGAGAAACAAATCTATTCCATTAGTCAAAGTA
130 CAGTGCAGATTTTGTACAGTAAGGTTAAGGTACTGAGAAACAAATCTATTCCATTAGTCAAAGTA
*
40306637 CTTTGGCGTAATAGTAGTTCAGAAGAAGCCACGTGGGAACCTGATGAGGCGATGCGACAATAATA
195 CTTTGGCGTAATAGTAGTTCAGAAGAAGCCACGTGGGAACCCGA-GAGGCGATGCGACAATAATA
40306702 C
259 C
*
40306703 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTA-CGTTCTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
* * * * * *
40306767 TCCCACTCACATAGTAATACATG-G-GGAGATTGAGGTTCGGCCAGATCTTACCTTCGGGGAGAA
66 T--CACGCACA-AGTAATACATGTGAAGAGATTGAGGTTCGACCAAATCTGACCTTCGAGGAGAA
* ** * *
40306830 GCCAGTGCAGATTTTTTACAGTGGGGTTAAGGTACTGAGGAACAAATCTATTCCATTAGTTAAAG
128 GCCAGTGCAGATTTTGTACAGTAAGGTTAAGGTACTGAGAAACAAATCTATTCCATTAGTCAAAG
* *
40306895 TACTTTGGCGTAATAGTAGTTCAGAAGAAGCCACGTGGGAACCCGAGGGGGGATGCGACA
193 TACTTTGGCGTAATAGTAGTTCAGAAGAAGCCACGTGGGAACCCGAGAGGCGATGCGACA
40306955 TCAATAGCCT
Statistics
Matches: 226, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
259 12 0.05
260 143 0.63
261 56 0.25
262 7 0.03
263 8 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (259 bp):
CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
TCACGCACAAGTAATACATGTGAAGAGATTGAGGTTCGACCAAATCTGACCTTCGAGGAGAAGCC
AGTGCAGATTTTGTACAGTAAGGTTAAGGTACTGAGAAACAAATCTATTCCATTAGTCAAAGTAC
TTTGGCGTAATAGTAGTTCAGAAGAAGCCACGTGGGAACCCGAGAGGCGATGCGACAATAATAC
Found at i:40307939 original size:618 final size:614
Alignment explanation
Indices: 40306703--40310698 Score: 4790
Period size: 617 Copynumber: 6.5 Consensus size: 614
40306693 ACAATAATAC
40306703 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTA-CGT-TCTG
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATC-TCTCTG
* ** * * * * *
40306766 ATCCCACTCACATAGTAATACATGGGGAGATTGAGGTTCGGCCAGATCTTACCTTCGGGGAGAAG
65 ATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAG
** * * *
40306831 CCAGTGCAGATTTTTTACAGTGGGGTTAAGGTACTGAGGAACAAATCTATTCCATTAGTTAAAGT
130 CCAGTGCAGATTTTGGACA-TGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
* * * *
40306896 ACTTTGGCGTAAT-AGTAGTTCAGAAGAAGCCACGTGGGAACCCGAGGGGGGATGCGACATCAAT
194 GCTTTGGCGTAATCA--AGTTCAGAAGAAGCCACGTGGGAACCCAAGAGGGGATGCGACAGCAAT
* * * * * * * *
40306960 AGCCTCATCATTTCTGACCAGGTAAATTTCTAGGCCGAAA-TTTCCTTAAAGGGGGTCA-TGTTG
257 ACCCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGC-TAAAGGGGGT-AGAGTTG
* * *
40307023 TAACGCCTCAAAATTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGGTTTAA
320 TAACGCC-CAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAA
40307088 TGGCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGC
384 TGGCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGC
*
40307153 ACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATA
449 ACAATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATA
* * *
40307218 CATGTTTTATGACACAAAAAAGCCATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTG
514 CATGCTTTATGACACAAAAAAGCCATTGGTCCAGTGGTAGGTGCATTGAGCCTTACCGTGTACTG
**
40307283 CAACGTGTGGGACCGGTCGCATATAAACTTGAGTTG
579 CAACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* * * * * *
40307319 CCTCTGAGATTAGACCAAATTCATGATGTGTTTCACATCTCCATGCTAAGGCTTTATCTCTTTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* * * * *
40307384 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCTTTGAGTATATGC
66 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGC
*
40307449 CAGTACAGATTTTGGATCATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
131 CAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
* * *
40307514 CTTTGTCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGGGATGCGGCAGCAATA
195 CTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTGGGAACCC-AAGAGGGGATGCGACAGCAATA
*
40307579 CCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTAG
258 CCCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTA-
* * *
40307644 TA-GCCCAAAATTTAAGTATGTCATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATG
322 -ACGCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATG
* * *
40307708 GCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTGAAGTCTTGGCCTTTGCAC
386 GCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC
* * *
40307773 AATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACTTAGGCGTTTTATATATTAATACT
451 AATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATACA
* * * *
40307838 TGCTTTATGACAC-AAAGAGCTTATTGGTCCAGTTGTAGGTGCATTGAAG-CTTACTGTGTACTG
516 TGCTTTATGACACAAAAAAGC-CATTGGTCCAGTGGTAGGTGCATTG-AGCCTTACCGTGTACTG
* * * *
40307901 CAACGTTTGGGACTGACCGCTTATAAATTTGAGTTG
579 CAACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* *
40307937 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCATGTCTCCATGCTAAGGCGTTATCGCTCTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* *
40308002 TCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCCGACCTTAGAGGAGAAGC
66 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGC
* * * * * *
40308067 CAATGCGGATTTTGGACCGTGAGGTTAAGTTACTAAGGAAGAAATCTATTCCATTAGTCAAAATG
131 CAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
* *
40308132 CTTTGGCGTAATCAAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGTGATGCGACAGTAATAC
195 CTTTGGCGTAATCAAGTTCAGAAGAAGCCACGTGGGAACCC-AAGAGGGGATGCGACAGCAATAC
* * *
40308197 CCTCATCTTTTCTGACCTGGTAAATTTAAAGCTCAAAATTTTGTTAAA-GGGGTAGAGTTGTAAC
259 CCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTAAC
* *
40308261 GCCCCAAAATTTAAGGCTCTAATTTTTGCATGTTTTGA-AGAAAATTGCTTG--T-C-----T-G
324 G-CCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACA-CAAATTGCTTGTTTGCTTTAATGG
**** *
40308316 C-------TTTA-------AT----G-GCCCCA-AA------GTTCAAGTCTTGGCCTTTGCACA
387 CTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACA
* * *
40308355 ATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACTTAGGCGTTTTATATATTAATACTT
452 ATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATACAT
* * * *
40308420 GCTTTATGACAC-AAAGAGCTTATTGGTCCAGTTGTAGGTGCATTGAAG-CTTACTGTGTACTGC
517 GCTTTATGACACAAAAAAGC-CATTGGTCCAGTGGTAGGTGCATTG-AGCCTTACCGTGTACTGC
* * * *
40308483 AACGTTTGGGACCGATCGCTTATAAACTTGAGTTT
580 AACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* *
40308518 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCATTATCGCTCTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* * * * * * * * ** *
40308583 TCACACACACGTAGTACCT-GTTGAAGAGATTGAGGTTTGACCAAATCTAACCTTCTAGGAGGAG
66 TCCCACTCACATAGTA-CTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAG
* * * * * *
40308647 CCAGTTCAGATTTTGTATCGTAAGGTTAAGGTACTGAGGAACAAATCTATTCCATTAGTCAAAAT
130 CCAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
* * * * *
40308712 GCTTTGGCGTAATAACAGTTGAGAAGAAGCCACGTGGGAACCCGAGGGGGCGATGCGACAACAAT
194 GCTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTGGGAACCCAAGAGGG-GATGCGACAGCAAT
* * * * * *
40308777 AGCCTCATCATTTT-TGACCAGGTAAATTTCTAGGCCAAAA-TTTCCTTAAAGGGGGTAGTGTTG
257 ACCCTCATC-TTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGC-TAAAGGGGGTAGAGTTG
* * * * *
40308840 TAATGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTGTGGTTTAA
320 TAACG-CCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAA
*
40308905 TGGCTAAGTGATTTAAGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGC
384 TGGCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGC
* *
40308970 ACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACATAGGCGTTTTATAGATTAATA
449 ACAATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATA
* * * * *
40309035 CTTGTTTTATGACAC-AAAGAGCCATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTG
514 CATGCTTTATGACACAAAAAAGCCATTGGTCCAGTGGTAGGTGCATTGAGCCTTACCGTGTACTG
* * *
40309099 CAACGTATGGGACCGATCACATATAAACTTGAGTTG
579 CAACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* * * * * *
40309135 CCTCTGAGATTAGACCAAATTCATGATGTGTTTCACATCTCCATGCTAAGGCTTTATCTCTTTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* * * *
40309200 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTTGAGTATATGC
66 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGC
*
40309265 CAGTACAGATTTTGGATCATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
131 CAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
* * * * * *
40309330 CTTTGTCGTAATCACAGTTTAGAAGAAGCAACGTGGGAACCGAAAGAGGGGATGCGGCAGTAATA
195 CTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTGGGAACC-CAAGAGGGGATGCGACAGCAATA
* ** * *
40309395 CACTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAAAATTTTGCTAAA-GGGGTAAAGTTGTAG
258 CCCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTAA
* * * *
40309459 CAGCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAAATTGCTTGATTGTTTTAATAG
323 C-GCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGG
* * *
40309524 CTATGTGATTTGGGTGTGTATGGGATTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACA
387 CTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACA
* * * ** ** * * *
40309589 ATTTTTAGTTTTTCTCCTAACTGAATCTAAACACTGGCAGTTAGGCCTTTTATATATTAATACTT
452 ATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATACAT
* * * * * **
40309654 GTTTTATGACAC-AAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGGCTTACCGTGTACTAAA
517 GCTTTATGACACAAAAAAGCC-ATTGGTCCAGTGGTAGGTGCATTGAGCCTTACCGTGTACTGCA
* * * *
40309718 ACATGTGGGACTGATCGCATATAAACTTGAGTTT
581 ACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* * * *
40309752 CCTCTGAAATTAGACCACATTCATGATGTATTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* * * * *
40309817 TCCCAGTCACAAAGTACTAGTTGGGGAGATTGAGGTTAGGCCAGATCTTACCTTCGAGGAGAAGC
66 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGC
* * * *
40309882 CAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGAGAAAGAAATCTATTCCATTAGTCAAA--G
131 CAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTG
* * ** *
40309945 ---T---GTAATCACTGTTCAGAAGAAGCAACGTGGGCTCCCGAAGAGGCGATGCGACAGCAATA
195 CTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTGGGAACCC-AAGAGGGGATGCGACAGCAATA
* * ** * * *
40310004 CCCTTATCTTTTTTGACCTGGTAAATTTTGAGGTCAAAATTTTGCCAAATGGGGTAGAGTTGTAG
258 CCCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTAA
* * *
40310069 CGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAAATTGCTTGATTGTTTTAATGG
323 CG-CCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGG
*
40310134 C-AATGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGACTTGGCAC
387 CTAA-GTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC
* * * *
40310198 AATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAGGCGTTTTATATATTAATACT
451 AATTTTTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATACA
* * * * * *
40310263 TGTTTTATGACAC-AAAGAGCCATTGGTCCAGTGGTAGGTTCGTTGGGCCTTATCGTGTACTGCA
516 TGCTTTATGACACAAAAAAGCCATTGGTCCAGTGGTAGGTGCATTGAGCCTTACCGTGTACTGCA
* *
40310327 ACGTGTGGGACCGAGCGCTTATAAACTTGAGTTG
581 ACGTGTGGGACCGACCGCATATAAACTTGAGTTG
* * * * * ** *
40310361 CCTCTGAGATTAGACCAGATTAATGATGTGTTTCACATCACCATGCTAAGGTTTTATCTCTTTGA
1 CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
* * *
40310426 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCATT-GAGTAGATG
66 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC-TTAGAGGAGAAG
** * * *
40310490 CCAGTAAAGATTTTGGACCGTGAGGTTAAGGTATTGAGGAAGGAATCTATTCCATTAGTCAAAGT
130 CCAGTGCAGATTTTGGA-CATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
* * ** *
40310555 GCTTTGTCGTAATCACAGTTCAAAAGAAGAAACGTGGGAACCCAAAGAGGCGATGCGACAGCAAT
194 GCTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTGGGAACCC-AAGAGGGGATGCGACAGCAAT
* ** * * *
40310620 ACCCTCATCTTTCCTGACCTGGTAAATTTTGAGGTCAAAATTTTACTAAAGGGGGTAGACTTCTA
257 ACCCTCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTA
40310685 ACGCCCCAAAATTT
322 ACG-CCCAAAATTT
40310699 GGGATGTTTG
Statistics
Matches: 2954, Mismatches: 350, Indels: 151
0.85 0.10 0.04
Matches are distributed among these distances:
581 370 0.13
582 72 0.02
583 63 0.02
584 1 0.00
585 1 0.00
587 2 0.00
588 2 0.00
589 1 0.00
591 1 0.00
592 2 0.00
593 2 0.00
599 4 0.00
600 3 0.00
606 2 0.00
607 2 0.00
608 1 0.00
609 328 0.11
610 215 0.07
611 3 0.00
612 3 0.00
613 1 0.00
614 3 0.00
615 3 0.00
616 321 0.11
617 921 0.31
618 618 0.21
619 8 0.00
620 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (614 bp):
CCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGA
TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGC
CAGTGCAGATTTTGGACATGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGC
TTTGGCGTAATCAAGTTCAGAAGAAGCCACGTGGGAACCCAAGAGGGGATGCGACAGCAATACCC
TCATCTTTTCTGACCTGGTAAATTTCAAGGTCAAAATTTTGCTAAAGGGGGTAGAGTTGTAACGC
CCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAA
GTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTT
TTAGTTTTCCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAATACATGCTT
TATGACACAAAAAAGCCATTGGTCCAGTGGTAGGTGCATTGAGCCTTACCGTGTACTGCAACGTG
TGGGACCGACCGCATATAAACTTGAGTTG
Found at i:40311636 original size:989 final size:983
Alignment explanation
Indices: 40309723--40311686 Score: 2665
Period size: 989 Copynumber: 2.0 Consensus size: 983
40309713 CTAAAACATG
*
40309723 TGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCACATTCATGATGTATTTCAC
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCACATTCATGATGTATTTCAC
* * * * *
40309788 GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCAGTCACAAAGTACTAGTTGGGGAGATTGAGGT
66 GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAAAGTACCAGTTGAGGAGATTGAGGT
* * * * ** *
40309853 TAGGCCAGATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGA
131 TAGGCCAGATCTGACCTTAGAGGAAAAGCCAATGCAGATTTTGTACCGTAAGGTTAAGGTACTAA
* * ** *
40309918 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACTGTTCAGAAGAAGCAACGTGGGCTCCCGA
196 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
* * * * *
40309983 AGAGGCGATGCGACAGCAATACCCTTATCTTTTTTGACCTGGTAAATTTTGAGGTCAAAATTTTG
261 AGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
* * * * * *
40310048 CCAAATGGGGTAGAGTTGTAGCGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAA
326 ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACACAA
* *
40310113 ATTGCTTGATTGTTTTAATGGCAATGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGT
391 ATTGCTTGATTGCTTTAATAGCAATGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGT
* * *
40310178 TCAAGTCTTGGACTTGGCACAATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAG
456 TCAAGTCCTGGACTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGACACATAG
** * *
40310243 GCGTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCGTTG
521 GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
** * * * * *
40310308 GGCCTTATCGTGTACTGCAACGTGTGGGACCGAGCGCTTATAAACTTGAGTTGCCTCTGAGATTA
586 AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAGATTA
* * * * * *
40310373 GACCAGATTAATGATGTGTTTCACATCACCATGCTAAGGTTTTATCTCTTTGATCCCACTCACAT
651 GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
* * * * * *
40310438 AGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCATTGAGTAGATGCCAGTAAAGATTT
716 AGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTGACCATTGAGGAGAAGCCAGTAAAGATTT
* * * *
40310503 TGGACCGTGAGGTTAAGGTATTGAGGAAGGAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAAT
781 TGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT
40310568 CACAGTTCAAAAGAAGAAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTC
846 CACAGTTCAAAAGAAGAAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTC
*
40310633 CTGACCTGGTAAATTT-TGAGGTCAAAATTTTACTAAAGGGGGTAGACTTCTAACGCCCCAAAAT
911 CTGACCTGGTAAATTTCT-AGCTCAAAATTTTACTAAA-GGGGTAGACTTCTAACGCCCCAAAAT
40310697 TTGGGATGTT
974 TTGGGATGTT
* * * *
40310707 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCACATTCATGATGTATTTCAC
* *
40310772 GTCTCCATGATAAGGTGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
66 GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAAAGTACCAGTTGAGGAGATTGAGGT
* *
40310837 TAGGCCAGATCTGACCTTAGAGGAAAAGCCAATGCGGATTTTAG-ACCGTAAGGTTAAGTTACTA
131 TAGGCCAGATCTGACCTTAGAGGAAAAGCCAATGCAGATTTT-GTACCGTAAGGTTAAGGTACTA
* *
40310901 AGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGTGTAATCA-AGTTCAGAAGAAGCCACGTA
195 AGAAAGAAATCTATTCCATTAGTCAAA--------GTGTAATCACAGTTCAGAAGAAGCAACGTA
* *
40310965 GGAACCAGAAGAGGCGATGCGACAGTAAGACTCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
252 GGAACCAGAAGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
* * *
40311030 GAAATTTT-ACTAACGGGGTAGGGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
317 AAAATTTTGACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
* * *
40311094 TTGA-AGGAAATTGCTTGTTTGCTTTAATAGCTAA-GTGATTTGGGTGTGTATGGGAGTGTTTGA
382 TTGACA-CAAATTGCTTGATTGCTTTAATAGC-AATGTGATTTAGGTGTGTATGGGAGTGTTTGA
* *
40311157 GAA-CCTTGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
445 GAAGCC-TGGGTTCAAGTCCTGGACTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
* * ** * **
40311221 ACTGACACTTAGGCCCTTTATATATTAATACTT-TTTTTTTTCACAAAGAGCTTATTTTTCCACG
509 ACTGACACATAGGCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGC-CATTGGTCCA-G
* * *
40311285 -GGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATTGGACCGATCACTTATTAACTTGAGT
572 TGGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGT
* * * * *
40311349 TTCCTCTGA-ATTAGACCAAATTCATGATGTGCTTCACGTCTCGATACTAAGGATTTATCGCTCT
637 TGCCTCTGAGATTAGACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCT
* *
40311413 GATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTTGGCCAGATCTGACC-TTCGAGGAGA
702 GATCCCACTCACATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTGACCATT-GAGGAGA
** *
40311477 AGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAA
766 AGCCAGTAAAGATTTTGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAA
* ** * *
40311542 GTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGTA
831 GTGCTTTGGCGTAATCACAGTTCAAAAGAAGAAACGTGGGAACCCAAAGAGGCGATGCGACAGCA
** * * * *
40311607 ATACCCT-AGTCTTTTTTGACCTGGTAAATTTCTAGCTCGAAATTTTATTAAAGGGGTAGAGTTG
896 ATACCCTCA-TCTTTCCTGACCTGGTAAATTTCTAGCTCAAAATTTTACTAAAGGGGTAGACTTC
40311671 TAACGCCCCAAAATTT
960 TAACGCCCCAAAATTT
40311687 AAGTCTCTAA
Statistics
Matches: 850, Mismatches: 113, Indels: 30
0.86 0.11 0.03
Matches are distributed among these distances:
984 197 0.23
985 1 0.00
988 29 0.03
989 277 0.33
990 255 0.30
991 82 0.10
992 9 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (983 bp):
TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCACATTCATGATGTATTTCAC
GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAAAGTACCAGTTGAGGAGATTGAGGT
TAGGCCAGATCTGACCTTAGAGGAAAAGCCAATGCAGATTTTGTACCGTAAGGTTAAGGTACTAA
GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
AGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACACAA
ATTGCTTGATTGCTTTAATAGCAATGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGT
TCAAGTCCTGGACTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGACACATAG
GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAGATTA
GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
AGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTGACCATTGAGGAGAAGCCAGTAAAGATTT
TGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT
CACAGTTCAAAAGAAGAAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTC
CTGACCTGGTAAATTTCTAGCTCAAAATTTTACTAAAGGGGTAGACTTCTAACGCCCCAAAATTT
GGGATGTT
Found at i:40312139 original size:616 final size:614
Alignment explanation
Indices: 40310707--40312378 Score: 2585
Period size: 616 Copynumber: 2.7 Consensus size: 614
40310697 TTGGGATGTT
* * * * *
40310707 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTG-AATTAGACCAAATTCATGATGTGCTTCAC
* * * * *
40310772 GTCTCCATGA-TAAGG-TGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAG
65 GTCTCGAT-ACTAAGGAT-TTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAG
* * * * * * * *
40310835 GTTAGGCCAGATCTGACCTTAGAGGAAAAGCCAATGCGGATTTTAGACCGTAAGGTTAAGTTACT
128 CTTTGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT
* *
40310900 -AAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGTGTAATCA-AGTTCAGAAGAAGCCACG
193 GAA-GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACG
* * *
40310963 TAGGAACCAGAAGAGGCGATGCGACAGTAAGACTCTCATCTTTTCTGACCTGGTAAATTTCGAGC
257 TGGGAACCAGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGC
* * *
40311028 TCGAAATTTTACTAACGGGGTAGGGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGT
322 TCGAAATTTTACTAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGT
* *
40311093 TTTGAAGGAAATTGCTTGTTTGCTTTAATAGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
387 TTTGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
40311158 AACCTTGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
452 AACC-TGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
* **
40311223 TGACACTTAGGCCCTTTATATATTAATACTTTTTTTTTTCACAAAGAGCTTATTTTTCCACGGGT
516 TGACACTTAGGCCCTTTATATATTAATACTTTTTTATGACACAAAGAGCTTATTTTTCCACGGGT
40311288 AGGTTCATTAAACCTTACCGTGTACTGAAACATA
581 AGGTTCATTAAACCTTACCGTGTACTGAAACATA
* * *
40311322 TTGGACCGATCACTTATTAACTTGAGTTTCCTCTGAATTAGACCAAATTCATGATGTGCTTCACG
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAATTAGACCAAATTCATGATGTGCTTCACG
40311387 TCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
40311452 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
131 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
40311517 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * *
40311582 AACCCGAAGAGGCGATGCGACAGTAATACCCT-AGTCTTTTTTGACCTGGTAAATTTCTAGCTCG
261 AACCAGAAGAGGCGATGCGACAGTAATACCCTCA-TCTTTTCTGACCTGGTAAATTTCGAGCTCG
*
40311646 AAATTTTATTAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTT
325 AAATTTTACTAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTT
* * *
40311711 GAAGAAAATTGTTTATTTGCTTTAATGGCTATGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
390 GAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA-
*
40311776 CC-GGGTTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
454 CCTGGG-TTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
** * *
40311840 GTACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTA
518 ACACTTAGGCCCTTTATATATTAATACTT-TTTTATGACACAAAGAGCTTATTTTTCCACGGGTA
40311905 GGTTCATTAAACCTTACCGTGTACTGAAACA-A
582 GGTTCATTAAACCTTACCGTGTACTGAAACATA
40311937 GTGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAATTAGACCAAATTCATGATGTGCTTCAC
1 -TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAATTAGACCAAATTCATGATGTGCTTCAC
40312002 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
65 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
40312067 TTGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
130 TTGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40312132 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTT-ATGAAGAAGCCACGTG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA-GAAGAAGCCACGTG
* * * *
40312196 GGAACCTGATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGA-CTAGGTAAATTTCGAGGC
259 GGAACCAGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTCGA-GC
* * * *
40312260 T-GAAATTTTCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACA-TATCTAATGTTTGCAT
322 TCGAAATTTTACTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTA-AGTCTCTAATTTTTGCAT
* * * *
40312323 GTTTAGACA-CAAATTGCTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
385 GTTTTGA-AGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGG
40312379 TAGTTTTTTC
Statistics
Matches: 973, Mismatches: 68, Indels: 30
0.91 0.06 0.03
Matches are distributed among these distances:
613 1 0.00
614 181 0.19
615 318 0.33
616 378 0.39
617 93 0.10
618 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (614 bp):
TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAATTAGACCAAATTCATGATGTGCTTCACG
TCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
AACCAGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCGA
AATTTTACTAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTG
AAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAACC
TGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGACA
CTTAGGCCCTTTATATATTAATACTTTTTTATGACACAAAGAGCTTATTTTTCCACGGGTAGGTT
CATTAAACCTTACCGTGTACTGAAACATA
Found at i:40315118 original size:618 final size:618
Alignment explanation
Indices: 40312379--40316642 Score: 5993
Period size: 617 Copynumber: 6.9 Consensus size: 618
40312369 GTGTGTATGG
* * * * *
40312379 TAGTTTTT-TCTTAAATGAATCTGGACATTGGCACCTAGGCCGTTTATATATTACTACTTGTTTA
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
* * ** * * *** *
40312443 ATGACACAAAGAGCCTATTAGTCTAGTGGTAGGTTCATTGGGGCTTACCGTGTACTAAAACATGT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * **
40312508 GGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCACG
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * * * * *
40312573 TCTCCATGCTAAGGCA-TTATCGCTCTGATCCCAGTCACAGAGTACTAGTTGGGGAGATTGAGGT
196 TCTCCATACTAAGG-ATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* * * * *
40312637 TAGGCCGGATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTG-
260 TAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* *
40312701 AGAAAGAAATCTATTCCATTAGTCAAA--G---T---GTAATCACTGTTCAGAAGAAGCAACGTG
325 AG-AAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTG
* *
40312758 GGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTC
389 GGAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTC
* * * * *
40312823 AAAATTTTGCAAAAGGGGGTAGAGTTGTAGCGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTT
454 GAAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
* * * * * * *
40312888 TTGACACAAATTGCTTGATTGTTTTAATGGCTATGTGATTTAGGTGTGCATGGGAGTGTTTGAGA
519 TTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
*
40312953 AGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTT
584 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* * *
40312988 TAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
* * ** * * ** *
40313053 ATGACACAAAGAGC-CATTGGTCCAGTGGTAGGTTCGTTGGCCCTTACCGTGTACTGAAACGTGT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * * * * *
40313117 GGGACCGAGCGCTTATAAACTTGAGTTGCCTCTGAGATTAGACCAGATTAATGATGTGTTTCACA
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * * * * * * *
40313182 TCACCATGCTAAGGCTTTATCTCTTTGATCCCAGTCACATAGTACTAGTTGAGGAGATTGAGGTT
196 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * * * *
40313247 AGGCTAGATCTGACCATT-GAGTAGATGCCAGT-AATGATTTTGGACCGTGAGGTTAAGGTATTG
261 AGGCCAGATCTGACC-TTCGAGGAGAAGCCAGTGCA-GATTTTGGACCGTGAGGTTAAGTTACTG
* * *
40313310 ACGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAATCACAGTTCAGAAGAAGCAACGTG
324 AAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTG
* * * ** *
40313375 GGAACCCAAAGAGGCGATACGACAGCAATACCCTTATCTTTTCTGACCTGGTAAATTTCGAGGTC
389 GGAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTC
* * * * *
40313440 AAAATTTTACTAAAGGGGGTAGACTTCTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
454 GAAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
**
40313505 TTGAAGGAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
519 TTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
*
40313570 A-CCTTGGGTTCAAGTCCTGGCCTTTGCACAATTTT
584 AGCC-TGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* *
40313605 TAGTTTTTCTCTTAAATGAATCTGGACACTGACACTTAGGCCCTTTATATATTAATACTT-TTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
* * *
40313669 TTGACACAAAGAGCTTATTTTTCCACGGGTAGGTTCATTAAACCTTACCGTGTACTGAAACATAT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* *
40313734 TGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAAATTCATGATGTGCTTCACG
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40313799 TCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
196 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* *
40313864 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAA
261 AGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
40313929 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
326 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
** * *
40313994 AACCCGAAGAGGCGATATGACAGTAATACCCTCGTGTTTTCTGACCTGGTAAATTTTGAGCTCGA
391 AACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCGA
* * *
40314059 AATTTTGGTAAAGGGCGTAGAGTTGTAACACCCCAAAATTTAAG--TCTAATTTTTGCATGTTTT
456 AATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTT
* *
40314122 GAAGAAAATTGCTTGTTTGCTTTCATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
521 GAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
* *
40314187 CCTGGGTTCAAGTGTTGGCCTTTGCAGAATTTT
586 CCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* * *
40314220 TAGTTTTTCTCTTAAATGAATCTTGACACTGGCACTTGGGCCTTTTATCTATTAATAC-T-TTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
40314283 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
*
40314348 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAAATTCATGATGTGCTTCACG
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
40314413 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
196 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * *
40314478 GGGCCAGATCTGACCTTCGAGGTGGAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTCAA
261 AGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
40314543 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
326 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * * * **
40314608 AACCCGAAGAGGCGATGTGAGAGTAATACCCTCGTCTTTTCTAACCTCGTATTTTTTTGAGGTCG
391 AACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTA-AATTTTGAGGTCG
* * *
40314673 AAATTTTGTTAAAGGGGGTACAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTT
455 AAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
* * * *
40314738 TGAAAAAAATTTCTTCTTTGCTTTAATGGATAAGTGATTTGTGTGTGTATGGGAGTGTTTGAGAA
520 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
*
40314803 GCCTGGGTTCAAGGCTTGGCCTTTGCACAATTTT
585 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* * *
40314837 TAGTTTGTATCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATTTATTAATACTTGTTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
* *
40314902 TTGACACAAAGAGCTTATTTTTCCACAGGTAGGTTCATTGAACCATACCGTGTACTGAAACATGT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
*
40314967 -GGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAAG
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40315031 TCTCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
196 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40315096 GGGCCAGATCTGACCTTCGAGGTGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTAAA
261 AGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * *
40315161 GAAAAAATCTATTCCATTAGTCAAAGTGCTTTGGCAG-AATCACTGTTCAAAAAAAGCCACGTGG
326 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGC-GTAATCACAGTTCAGAAGAAGCCACGTGG
** * *
40315225 GAACCTAAAGAGGCGATGCGATAGTAATACCCTCGTCTTTTCTGACCTTGTAAATTTTGGAGGTC
390 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTT-GAGGTC
* * * *
40315290 AAAATTTTGTTAAATGGGGTAGAGTTGCAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
454 GAAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
* * *
40315355 TAGAAAAAAAATTGCTTGTATGCTTAAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
519 TTG-AAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
40315420 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
583 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* * * * *
40315456 TAGTTTTTCTCTTAAATGAATCTTGACACTGGAAATTAGGTCTTCTATATATTAATACTTGTTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTG-TTT
* * *
40315521 TTTTACACAAAGAGCTTATTTTTCCACTGGTAGGTTCGTTGAACCTTGCCGTGTACTGAAACATG
65 TTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATG
* *
40315586 TGGGACCGATCAATTATTAACTTGAGTTTCCTCTGAAATTAGGCCAGATTCATGATGTGCTTCAC
130 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* *
40315651 GTCCCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
195 GTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* * *
40315716 TGGGCCAGATCTGACCTTCGAGGAGAGGCCAGTGCAGATTTTGGACTGTGAGGTTAAGTTACTGA
260 TAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40315781 AGAAGAAATCTATTCTATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
325 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * * * *
40315846 GAACCCGAAGAGGGGATGCGACAGTAATACCTTCGCCTTTTTTGACCTAGTAAATTTTGAGGTCG
390 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCG
* * * *
40315911 AAATTTTGTTAAA-GGGGTAGAGCTGTAACGCCCCAAAATTTAAGTCTATAAGTTTTGCATGTTT
455 AAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
* * *
40315975 TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTCGGTGTGTGTGGGAGTGTTTGAGAA
520 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
40316040 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
585 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
* *
40316074 TAGTTTTTCTCTTAAATGAATTTGGACTCTGGCACTTAGGCCTTTTATATATTAATAC-T-TTTT
1 TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
*
40316137 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCATGTACTGAAACATGT
66 TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * *
40316202 GGCACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTTGACCAGATTCATGATGTGCTTCGCG
131 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * ** *
40316267 TCTCCATGCTAA-GACGTTAACGCTCTGATCACGGTC-GCATAGTA-ATTGTTGA-AGAGATTGA
196 TCTCCATACTAAGGA-TTTATCGCTCTGATCCCACTCAG-ATAGTACA-AGTTGAGA-AGATTGA
* * * *
40316328 GGTTAGACCAAATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACG-TA
257 GCTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAA-GTTA
* * * *
40316392 CTGAGGTAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGCCAC
321 CTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCAC
* * * * *
40316457 GTGGGAACCTGATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGA-CTAGGTAAATTTTGA
386 GTGGGAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCT-GGTAAATTTTGA
* * * *
40316521 GG-CTGAAATTTTCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACA-TATCTAATGTTTG
450 GGTC-GAAATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTA-AGTCTCTAATTTTTG
* * * * * *
40316584 CATGTTTAGACACAAATTGTTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
513 CATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGG
40316643 TAGTTTTTTC
Statistics
Matches: 3300, Mismatches: 317, Indels: 69
0.90 0.09 0.02
Matches are distributed among these distances:
608 1 0.00
609 238 0.07
610 66 0.02
611 1 0.00
614 375 0.11
615 557 0.17
616 110 0.03
617 810 0.25
618 506 0.15
619 259 0.08
620 84 0.03
621 293 0.09
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (618 bp):
TAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTT
TTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
AGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
AACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCGA
AATTTTGCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTT
GAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
CCTGGGTTCAAGTCTTGGCCTTTGCACAATTTT
Found at i:40317175 original size:570 final size:564
Alignment explanation
Indices: 40316074--40317204 Score: 1501
Period size: 570 Copynumber: 2.0 Consensus size: 564
40316064 GCACAATTTT
* * * * *
40316074 TAGTTTTTCTCTTAAATGAATTTGGACTCTGGCACTTAGGCCTTTTATATATTAATACTTTTTTT
1 TAGTTTTTCTCTTAAACGAATCTGGACTCTGGCACCTAGGCCGTTTATATATTAATACTTTTTAT
* ** *
40316139 GACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCATGTACTGAAACATGTGG
66 GACACAAAGAGCCTATTAGTCCACTGGTAGGTTCATTGAACCTTACCATGTACTAAAACATGTGG
* * * *
40316204 CACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTTGACCAGATTCATGATGTGCTTCGCGTC
131 CACCGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTACTTCACGTC
* * * * *
40316269 TCCATGCTAAGACGTTAACGCTCTGATCACGGTCGCATAGTAATTGTTGAAGAGATTGAGGTTAG
196 TCCATGCTAAGACATTAACGCTCTGATCACAGTCACAGAGTAATAGTTGAAGAGATTGAGGTTAG
**
40316334 ACCAAATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACGTACTGAGGT
261 ACCAAATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACGTACTGAGAA
* *
40316399 AGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGCCACGTGGGAA
326 AGAAATCTATTCCATTAGTCAAAG-G--TT-G-GTAATAACAGTTCAGAAGAAGCAACGTGGGAA
* * * * *
40316464 CCTGATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGACTAGGTAAATTTTGAGGCTGAAA
386 CCCGAAGAGGCGATACGACAGCAATACCCTCATCTTTTCTGACTAGGTAAATTTTGAGGCTAAAA
40316529 TTTTCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACATATCTAATGTTTGCATGTTTAGA
451 TTTTCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACATATCTAATGTTTGCATGTTTAGA
40316594 CACAAATTGTTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
516 CACAAATTGTTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
*
40316643 TAGTTTTT-TCTTAAACGAATCTGGACAT-TGGCACCTAGGCCGTTTATATATTACTACTTGTTT
1 TAGTTTTTCTCTTAAACGAATCTGGAC-TCTGGCACCTAGGCCGTTTATATATTAATACTT-TTT
* *** *
40316706 AATGACACAAAGAGCCTATTAGTCCAGTGGTAGGTTCATTGGGGCTTACCGTGTACTAAAACATG
64 -ATGACACAAAGAGCCTATTAGTCCACTGGTAGGTTCATTGAACCTTACCATGTACTAAAACATG
* * *
40316771 TGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
128 TGGCACCGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTACTTCAC
* * * * **
40316836 GTCTCCATGCTAAGGCATTATCGCTCTGATCCCAGTCACAGAGTACTAGTTGGGGAGATTGAGGT
193 GTCTCCATGCTAAGACATTAACGCTCTGATCACAGTCACAGAGTAATAGTTGAAGAGATTGAGGT
* ** * * *
40316901 TAGGCCGGATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGA
258 TAGACCAAATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACGTACTGA
* *
40316966 GAAAGAAATCTATTCCATTAGTCAAA-G-T-GTAATCACTGTTCAGAAGAAGCAACGTGGGAACC
323 GAAAGAAATCTATTCCATTAGTCAAAGGTTGGTAATAACAGTTCAGAAGAAGCAACGTGGGAACC
*
40317028 CGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGG-TCAAAA
388 CGAAGAGGCGATACGACAGCAATACCCTCATCTTTTCTGA-CTAGGTAAATTTTGAGGCT-AAAA
* * * * * * *
40317091 TTTTGCC-AAAGGGGGTAGAGTTGTAGCGTCCCAAAATTTA-AGTCTCTCATTTTTGCATGTTTT
451 TTTT-CCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACA-TATCTAATGTTTGCATGTTTA
* * * *
40317154 GACACAAATTGCTTGATTGTT--TTAATGGCTATGTGATTTAGGTGTGCATGG
514 GACACAAATTGTTTG-TT-TTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
40317205 GAGTGTTTGA
Statistics
Matches: 491, Mismatches: 62, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
561 2 0.00
562 174 0.35
563 6 0.01
564 2 0.00
565 1 0.00
568 45 0.09
569 12 0.02
570 249 0.51
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (564 bp):
TAGTTTTTCTCTTAAACGAATCTGGACTCTGGCACCTAGGCCGTTTATATATTAATACTTTTTAT
GACACAAAGAGCCTATTAGTCCACTGGTAGGTTCATTGAACCTTACCATGTACTAAAACATGTGG
CACCGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTACTTCACGTC
TCCATGCTAAGACATTAACGCTCTGATCACAGTCACAGAGTAATAGTTGAAGAGATTGAGGTTAG
ACCAAATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACGTACTGAGAA
AGAAATCTATTCCATTAGTCAAAGGTTGGTAATAACAGTTCAGAAGAAGCAACGTGGGAACCCGA
AGAGGCGATACGACAGCAATACCCTCATCTTTTCTGACTAGGTAAATTTTGAGGCTAAAATTTTC
CTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACATATCTAATGTTTGCATGTTTAGACACAA
ATTGTTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
Found at i:40318684 original size:990 final size:984
Alignment explanation
Indices: 40316771--40318736 Score: 2713
Period size: 990 Copynumber: 2.0 Consensus size: 984
40316761 CTAAAACATG
*
40316771 TGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
* * * * *
40316836 GTCTCCATGCTAAGGCATTATCGCTCTGATCCCAGTCACAGAGTACTAGTTGGGGAGATTGAGGT
66 GTCTCCATGATAAGGCATTATCCCTCTGATCCCACTCACAGAGTACCAGTTGAGGAGATTGAGGT
* * * * * ** *
40316901 TAGGCCGGATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGA
131 TAGGCCAGATCTGACCTTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAA
* * *
40316966 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACTGTTCAGAAGAAGCAACGTGGGAACCCGA
196 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
* *
40317031 AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAAAATTTTG
261 AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
* * * * * *
40317096 CCAAAGGGGGTAGAGTTGTAGCGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAA
326 ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACACAA
* *
40317161 ATTGCTTGATTGTTTTAATGGCTATGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGT
391 ATTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGT
* * *
40317226 TCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAG
456 TCAAGTCCTCGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAG
** * *
40317291 GCGTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCGTTG
521 GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
** * * * * *
40317356 GCCCTTACCGTGTACTGCAACGTGTGGGACCGAGCGCTTATAAACTTGAGTTGCCTCTGAGATTA
586 AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAAATTA
* * * * * * *
40317421 GACCAGATTAATGATGTGTTTCACATCACCATGCTAAGGCTTTATCTCTTTGATCCCAGTCACAT
651 GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
* * * * * * *
40317486 AGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCATTGAGTAGATGCCAGTAAAGATTT
716 AGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTAACCATTGAGGAGAAGCCAGTAAAGATTT
* * *
40317551 TGGACCGTGAGGTTAAGGTATTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAAT
781 CGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT
* *
40317616 CACATTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAATACCCTCATCTTTT
846 CAAAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAATACCCTCATCTTTT
* * * **
40317681 TTGACCTGGTAAATTTCGAGGTCAAAATTTTACTAAAGGGGGTAGAGTTGTAATGCCCCAAAATT
911 CTGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAAGGGCGTAGAGTTGTAACACCCCAAAATT
40317746 TGGGACGTT
976 TGGGACGTT
* * *
40317755 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
** *
40317820 GTCTCCATGATAAGGTGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
66 GTCTCCATGATAAGGCATTATCCCTCTGATCCCACTCACAGAGTACCAGTTGAGGAGATTGAGGT
* * *
40317885 TAGGTCAGATCTGACCTTAGAGGAGAAGCCAATGCGGATTTTGGACCGTAAGGTTAAGTTACTAA
131 TAGGCCAGATCTGACCTTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAA
* *
40317950 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTAG
196 GAAAGAAATCTATTCCATTAGTCAAA--G---T---GTAATCACAGTTCAGAAGAAGCAACGTAG
* * *
40318014 GAACCAGAAGAGGCGATGCGACAGTAATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCG
253 GAACCAGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCA
*
40318079 AAATTTT-ACTAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTT
318 AAATTTTGACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTT
* * * *
40318143 TGA-AGGAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
383 TGACA-CAAATTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGCATGGGAGTGTTTGAGA
*
40318207 A-CCTTGGGTTCAAGTCCTCGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
447 AGCC-TGGGTTCAAGTCCTCGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
* * * **
40318271 TGGCACTTAGGCCCTTTATATATTAATACTT-TTTTTTGACACAAAGAGCTTATTTTTCCACG-G
511 TGGCACATAGGCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGC-CATTGGTCCA-GTG
* * * *
40318334 GTAGGTTCATTAAACCTTACCGTGTACTGAAACATATTGGACCGATCACTTATTAACTTGAGTTT
574 GTAGGTTCATTAAACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTG
* * * *
40318399 CCTCTGAAATTAGACCAAATTCATGATGTGCTTCACGTCTCGATACTAAGGATTTATCGCTCTGA
639 CCTCTGAAATTAGACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGA
* **
40318464 TCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTTTGCCAGATCTAACC-TTCGAGGAGAAG
704 TCCCACTCACATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTAACCATT-GAGGAGAAG
* ** * *
40318528 CTAGTGCAGATTTCGGACCTTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGT
768 CCAGTAAAGATTTCGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGT
* * * * * *
40318593 GCTTTGGCGTAATCAAAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGTTGCGAGAGTAAT
833 GCTTTGGCGTAATCAAAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAAT
* * * **
40318658 ACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCGAAATTTTGTTAAAGGGCGTAGAGTTGTA
898 ACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAAGGGCGTAGAGTTGTA
40318723 ACACCCCAAAATTT
963 ACACCCCAAAATTT
40318737 AAGTCTAATT
Statistics
Matches: 852, Mismatches: 117, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
984 197 0.23
986 1 0.00
989 23 0.03
990 539 0.63
991 85 0.10
992 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (984 bp):
TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
GTCTCCATGATAAGGCATTATCCCTCTGATCCCACTCACAGAGTACCAGTTGAGGAGATTGAGGT
TAGGCCAGATCTGACCTTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAA
GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACACAA
ATTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGT
TCAAGTCCTCGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAG
GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAAATTA
GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
AGTACAAGTTGAGAAGATTGAGCTTAGGCCAGATCTAACCATTGAGGAGAAGCCAGTAAAGATTT
CGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT
CAAAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAATACCCTCATCTTTT
CTGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAAGGGCGTAGAGTTGTAACACCCCAAAATT
TGGGACGTT
Found at i:40320706 original size:617 final size:617
Alignment explanation
Indices: 40317755--40322015 Score: 6951
Period size: 614 Copynumber: 6.9 Consensus size: 617
40317745 TTGGGACGTT
* * * * * *
40317755 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* * * * *
40317820 GTCTCCATGA-TAAGG-TGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAG
66 GTCTCGAT-ACTAAGGAT-TTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAG
* * * * * * *
40317883 GTTAGGTCAGATCTGACCTTAGAGGAGAAGCCAATGCGGATTTTGGACCGTAAGGTTAAGTTACT
129 CTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT
40317948 -AAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-AGTTCAGAAGAAGCCACG
194 GAA-GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACG
* * * * * *
40318011 TAGGAACCAGAAGAGGCGATGCGACAGTAATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGC
258 TGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGC
** * *
40318076 TCGAAATTTTACT-AACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATG
323 TCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATG
*
40318140 TTTTGAAGGAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGA
388 TTTTGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGA
* *
40318205 GAA-CCTTGGGTTCAAGTCCTCGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
453 GAAGCC-TGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
* * * *
40318269 ACTGGCACTTAGGCCCTTTATATATTAATACTTTTTTTTGACACAAAGAGCTTATTTTTCCACGG
517 ACTGGCACTTAGGCCTTTTATCTATTAATACTGTTTTTTGACACAAAGAGCTTATTTTTCCACTG
* *
40318334 GTAGGTTCATTAAACCTTACCGTGTACTGAAACATA
582 GTAGGTTCATTGAACCTTACCGTGTACTGAAACATG
* *
40318370 TTGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAAATTCATGATGTGCTTCAC
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
40318435 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
** * * * *
40318500 TTTGCCAGATCTAACCTTCGAGGAGAAGCTAGTGCAGATTTCGGACCTTGAGGTTAAGTTACTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40318565 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCAAAGTTCAGAAGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
*
40318630 GAACCCGAAGAGGCGTTGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCG
261 GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCG
* *
40318695 AAATTTTGTTAAAGGGCGTAGAGTTGTAACACCCCAAAATTTAAG--TCTAATTTTTGCATGTTT
326 AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
40318758 TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
391 TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* *
40318823 GCCTGGGTTCAAGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTG
456 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
* *
40318888 GCACTTGGGCCTTTTATCTATTAATACT-TTTTTCGACACAAAGAGCTTATTTTTCCACTGGTAG
521 GCACTTAGGCCTTTTATCTATTAATACTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
40318952 GTTCATTGAACCTTACCGTGTACTGAAACATG
586 GTTCATTGAACCTTACCGTGTACTGAAACATG
40318984 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
*
40319049 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTAAGATAGTACAAGTTGAGAAGATTGAGCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* *
40319114 TGGGCCAGATCTGACCTTCAAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTATTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40319179 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAGGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * ** *
40319244 GAACCCGAAGAGGCGATGTGAGAGTAATACCCTCGTCTTTTCTGACCTCGTATTTTTTTGAGGTC
261 GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTA-AATTTTGAGCTC
* * *
40319309 AAAATTTTGTTAAAGGGGGTAGAGTTATAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTT
325 GAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
* * * *
40319374 TTGAAAAAAAATT-CTTCTTTGCTTTAATGGATAAGTGATTTGTGTGTGTATGGGAGTGTTTGAG
390 TTG-AAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
*
40319438 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTGTCTCTTAAATGAATCTGGACAC
454 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
*
40319503 TGGCACTTAGGCCTTTTATTTATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
519 TGGCACTTAGGCCTTTTATCTATTAATAC-TGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
*
40319568 TAGGTTCATTGAACCTTACCGTGCACTGAAACATG
583 TAGGTTCATTGAACCTTACCGTGTACTGAAACATG
* * * *
40319603 T-GGACCGATCACTTATTAACCTGAGTTTCCTCTGAAATTAGACCAGATTCATGATATGCTTTAT
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* * *
40319667 GTTTCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* *
40319732 TGGGCCAGATCTGACCTTCGAGGTGAAGCGAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40319797 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCAG-AATCACAGTTCAGAAGAAGCCACGTA
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGC-GTAATCACAGTTCAGAAGAAGCCACGTG
*
40319861 GGAACCCAAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTC
260 GGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTC
* *
40319926 GAAATTTTGTTAAAGGGCGTAGAGTTGTAACACCCCAAAATTTAAG--TCTAATTTTTGCATGTT
325 GAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
*
40319989 TTGAAGAAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
390 TTGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
* *
40320054 AGCCTGGGTTCAAGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACT
455 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
* * *
40320119 GGCACTTGGGCCTTTTATCTATTAATAC-CTTTTTCGACACAAAGAGCTTATTTTTCCACTGGTA
520 GGCACTTAGGCCTTTTATCTATTAATACTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40320183 GGTTCATTGAACCTTACCGTGTACTGAAACATG
585 GGTTCATTGAACCTTACCGTGTACTGAAACATG
40320216 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* *
40320281 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTAAGATAGTACAAGTTGAGAAGATTGATCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* *
40320346 TGGGCCAGATCTGACCTTCAAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTATTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40320411 AGTAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* ** * *
40320476 GAACCCGAAGAGGCGATGTGAGAGTAATACCCTCGTCTTTTCTGACCTGGTATTTTTTTCAGGTC
261 GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTA-AATTTTGAGCTC
* *
40320541 AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTT
325 GAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
* * * *
40320606 TTGAAAAAAAATT-CTTCTTTGCTTTAATGGATAAGTGATTTGTGTGTGTATGGGAGTGTTTGAG
390 TTG-AAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
*
40320670 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTGTCTCTTAAATGAATCTGGACAC
454 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAC
* *
40320735 TGGCACTTAGGCCTTTTATTTATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACGGG
519 TGGCACTTAGGCCTTTTATCTATTAATAC-TGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
40320800 TAGGTTCATTGAACCTTACCGTGTACTGAAACATG
583 TAGGTTCATTGAACCTTACCGTGTACTGAAACATG
*
40320835 T-GGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATATGCTTCAC
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* *
40320899 GTCTCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
*
40320964 TGGGCCAGATCTGACCTTCGAGGTGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
*
40321029 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGGAATCACAGTTCAGAAGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* *
40321094 GAACCCAAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTCTGAGCTCG
261 GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCG
* *
40321159 AAATTTTGTTAAAGGGCGTAGAGTTGTAACACCCCAAAATTTAAG--TCTAATTTTTGCATGTTT
326 AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
40321222 TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
391 TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* *
40321287 GCCTGGGTTCAAGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTG
456 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
* * *
40321352 GCACTTGGGCTTTTTATCTATTAATACT-TTTTTCGACACAAAGAGCTTATTTTTCCACTGGTAG
521 GCACTTAGGCCTTTTATCTATTAATACTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
*
40321416 GTTCATTGAACCTTACCGTGTACTGAAACATC
586 GTTCATTGAACCTTACCGTGTACTGAAACATG
* *
40321448 TGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGATTCATGATGTGCTTCAC
1 TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* *
40321513 ATCTCGATACTAAGGATTTATCGCTCTGATCCCACTAAGATAGTACAAGTTGAGAAGATTGAGCT
66 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* *
40321578 TGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGTAGATTTTGGACCGTGAGGTTAAGTTACTGA
131 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
40321643 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * *
40321708 GAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCG
261 GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCG
* * * *
40321773 AAATTTTGTTAAAAGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTT
326 AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
* *
40321838 TGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGGGA
391 TG-AAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
** **
40321903 AGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
455 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
* *
40321968 GGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAG
520 GGCACTTAGGCCTTTTATCTATTAATAC-TGTTTTTTGACACAAAGAG
40322016 TTGTAATGCC
Statistics
Matches: 3392, Mismatches: 225, Indels: 54
0.92 0.06 0.01
Matches are distributed among these distances:
613 134 0.04
614 1015 0.30
615 784 0.23
616 112 0.03
617 589 0.17
618 607 0.18
619 151 0.04
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (617 bp):
TGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
GAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGCTCG
AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTT
TGAAGAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
GCACTTAGGCCTTTTATCTATTAATACTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
GTTCATTGAACCTTACCGTGTACTGAAACATG
Found at i:40322174 original size:221 final size:220
Alignment explanation
Indices: 40321792--40322236 Score: 755
Period size: 221 Copynumber: 2.0 Consensus size: 220
40321782 TAAAAGGGGT
*
40321792 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTT
1 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAAATTGCTTGTT
* *
40321857 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTA
66 TGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTA
* * ** *
40321922 TCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
131 GCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
*
40321987 TATTAATACTTGTTTTTTGACACAA
196 TATTAATACTTCTTTTTTGACACAA
* *
40322012 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
1 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAA-ATTGCTTGT
40322077 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
65 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
* * *
40322142 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
130 AGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTAT
40322207 ATATTAATACTTCTTTTTTGACACAA
195 ATATTAATACTTCTTTTTTGACACAA
40322233 AGAG
1 AGAG
40322237 CTTATTTTTC
Statistics
Matches: 210, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
220 52 0.25
221 158 0.75
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (220 bp):
AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAAATTGCTTGTT
TGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTA
GCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
TATTAATACTTCTTTTTTGACACAA
Found at i:40322847 original size:840 final size:840
Alignment explanation
Indices: 40321178--40323695 Score: 4751
Period size: 840 Copynumber: 3.0 Consensus size: 840
40321168 TAAAGGGCGT
** * * *
40321178 AGAGTTGTAACACCCCAAAATTTAAG--TCTAATTTTTGCATGTTTTG-AAGAAA-ATTGCTTGT
1 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
*
40321239 TTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
66 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
* * * * *
40321304 GGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTGGCACTTGGGCTTTTTAT
131 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
* * * *
40321369 CTATTAATAC-T-TTTTTCGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTAC
196 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
*
40321432 CGTGTACTGAAACATCTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
261 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
* * * * *
40321497 TCATGATGTGCTTCACATCTCGATACTAAGGATTTATCGCTCTGATCCCACTAAGATAGTACAAG
326 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
*
40321562 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGTAGATTTTGGACCGT
391 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
*
40321627 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC
456 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
40321692 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
521 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
*
40321757 GTAAATTTTGAGGTCGAAATTTTGTTAAAAGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
586 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
40321822 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
651 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
40321887 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
716 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
40321952 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
781 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
40322012 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
1 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
40322077 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
66 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
40322142 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
131 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
40322207 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
196 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
40322272 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
261 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
40322337 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
326 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
* *
40322402 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGAACAAGCCAGTGCAGATTTTGGACCAT
391 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
40322467 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
456 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
40322532 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
521 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
40322597 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
586 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
40322662 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
651 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
40322727 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
716 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
40322792 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
781 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
40322852 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
1 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
40322917 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
66 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
40322982 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
131 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
40323047 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
196 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
40323112 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
261 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
40323177 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
326 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
40323242 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
391 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
40323307 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
456 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
40323372 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
521 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
40323437 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
586 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
40323502 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
651 TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
40323567 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
716 ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
*
40323632 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTTTTTTTTGACACAA
781 AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
40323692 AGAG
1 AGAG
40323696 CTTATTTTTC
Statistics
Matches: 1649, Mismatches: 29, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
834 23 0.01
836 19 0.01
837 5 0.00
838 142 0.09
839 1 0.00
840 1459 0.88
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (840 bp):
AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCAAAAATATAAGTCTC
TAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
ATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTATCCTTTGCGTAATTTTTAGTTTTTCTCTTA
AATGAATCTGGACACTGGCAATTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAA
Found at i:40323014 original size:221 final size:220
Alignment explanation
Indices: 40322632--40323076 Score: 755
Period size: 221 Copynumber: 2.0 Consensus size: 220
40322622 TAAAGGGGGT
*
40322632 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTT
1 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAAATTGCTTGTT
* *
40322697 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTA
66 TGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTA
* * ** *
40322762 TCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
131 GCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
*
40322827 TATTAATACTTGTTTTTTGACACAA
196 TATTAATACTTCTTTTTTGACACAA
* *
40322852 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
1 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAA-ATTGCTTGT
40322917 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
65 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
* * *
40322982 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
130 AGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTAT
40323047 ATATTAATACTTCTTTTTTGACACAA
195 ATATTAATACTTCTTTTTTGACACAA
40323073 AGAG
1 AGAG
40323077 CTTATTTTTC
Statistics
Matches: 210, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
220 52 0.25
221 158 0.75
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (220 bp):
AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTCCATGTTTTGAAAAAAAATTGCTTGTT
TGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTA
GCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
TATTAATACTTCTTTTTTGACACAA
Found at i:40325495 original size:619 final size:618
Alignment explanation
Indices: 40322852--40331255 Score: 12898
Period size: 617 Copynumber: 13.6 Consensus size: 618
40322842 TTTGACACAA
* *
40322852 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATATTGCTTGT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAA-ATTGCTTGT
*
40322917 TTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
64 TTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT
* *
40322982 GGCCTTGGCACAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTGGGCCTTTTAT
129 GGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTAT
* * *
40323047 ATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTC
194 ATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTAC
* *
40323112 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTTCTCTAAAATTAGACCAGAT
259 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGAT
* *
40323177 TCATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAG
324 TCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAG
*
40323242 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGT
389 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGT
*
40323307 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGCTC
454 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC
* *
40323372 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTCTTTTCTGACCTG
519 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTG
40323437 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
584 GTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * *
40323472 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAAATTGCTTGTT
* *
40323537 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTA
65 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
* * ** *
40323602 TCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATA
130 GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATA
*
40323667 TATTAATACTTTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACC
195 TATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACC
* *
40323732 GTGTACTGAAACATGTGGGACCGATCACTTACTAACTTGAGTTTCCTCTGAAATTAGATCAGATT
260 GTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATT
* *
40323797 CATGATGTGCTTCACGTCCCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGT
325 CATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
*
40323862 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGTG
390 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
* *
40323927 AGGTTAAGTTACTGAAGAAGAAATCTATTTCATTAGTCAAAGTGCTTTGGCGTAATCATAGTTCA
455 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
*
40323992 GAAGAAGCCACGTGGG-ACCCTAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
520 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
*
40324056 TAAATTTTGAGGTCGAAATTTTGTTGAAGGGGGT
585 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* *
40324090 AGAGTTGTAACTCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATTGCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
*
40324155 GCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
40324220 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* * * *
40324285 ATTAATACTTCTTTATTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTTCCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
*
40324350 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTAAAATTAGACCAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
* *
40324415 ATGATGTGCTTCACGTCTCCATACTAAGGAATTATCACTCTGATCCCACTCAGATAGTACAAGTT
326 ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
* * *
40324480 GAGAAGATTGAGCTTTGGCCTGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGTGA
391 GAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGA
*
40324545 GGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAG
456 GGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAG
* *
40324610 AAGAAGCCACGTGGGAACCCAAAGAGGCGATGCGATAGTAATACCCTCGTCTTTTCTGACCTGGT
521 AAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGT
*
40324675 AAATTTTGAGGTCAAAATTTTGTTAAAGGGGGT
586 AAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * * *
40324708 AGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTACTTGTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAAATTGCTTGTT
*
40324773 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGGGAAGCCTGGGTTCAAGTCTTG
65 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
* ** * *
40324838 GCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAATTAGGCCTTTTATT
130 GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATA
40324903 TATTAATACTTGTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTAC
195 TATTAATACTTG-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTAC
*
40324968 CGTGTACTGAAACATGTGGGACCGATCACTTACTAACTTGAGTTTCCTCTGAAATTAGACCAGAT
259 CGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGAT
* *
40325033 TCATGATGTGCTTCACGTCCCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAG
324 TCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAG
*
40325098 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGT
389 TTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGT
* * *
40325163 GAGGTTAAGTTACTGAACAAGAAATCTATTTCATTAGTCAAAGTGCTTTGGCGTAATCATAGTTC
454 GAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC
*
40325228 AGAAGAAGCCACGTGGG-ACCCCAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTG
519 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTG
* *
40325292 GTAAATTTTTTAGGTCGAAATTTTGTTGAAGGGGGT
584 GTAAA-TTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* *
40325328 AGACTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTCCATGTTTTGAAAAAAATTGCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
*
40325393 GCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
40325458 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
40325523 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
* *
40325588 TGTACTGAAACATGTGGGACTGATCACTTATTAACTTGAGTTTCCTGTGAAATTAGACCAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
40325653 ATGCA-GTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
326 ATG-ATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
* * * *
40325717 TGAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGCACAAGCCAGTGCAGATTTTGGATCGTG
390 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
*
40325782 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTA
455 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
* * *
40325847 GAAGAAGCCACGTGGGAACCCAAAGAGGCAATGCGATAGTAATACCCTCGTCTTTTCTGACCTGG
520 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
* * * *
40325912 TAAATCTTGAGGTCAAAATTCTGTTAAAGGGGCT
585 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * *
40325946 AGAGTTGTAATGCCCCAAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTGCTTGTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAAATTGCTTGTT
**
40326011 TGCTTTAATGGCTAAGTGATTTGGGTGTGTGCGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
65 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
* ** *
40326076 GCCTTTGCGTAATATTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCAAC-TAGGCCTTTTAT
130 GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGC-ACTTAGGCCTTTTAT
* *
40326140 ATATTAATACTTGTTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTCATTGAACCTTT
194 ATATTAATACTTG-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTA
40326205 CCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGA
258 CCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGA
* *
40326270 TTCATGATGTGCTTCACGTCCCCATACTAAGGATTTATCTCTCTGATCCCACTCAGATAGTACAA
323 TTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAA
* *
40326335 GTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCACTGCAGATTTTAGACCG
388 GTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCG
* * *
40326400 TGAGGTAAAGTTACTGAAGAAGAAATCTATTTCATTAGTCAAAGTGCTTTGGCGTAATCATAGTT
453 TGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTT
40326465 CAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCT
518 CAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCT
* *
40326530 GGTAAATTTTGTGGTCGAAATTTTGTTAAAGGGGGC
583 GGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * * *
40326566 AGAGTTGTAATGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTTAAAAAATTTTCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
*
40326631 GCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
*
40326696 CCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
*
40326761 ATTAATACTTTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
*
40326826 TGTACTGAAACATGTGGGA-CGATCACTTATTAACTTGAGTTTCCTCTAAAATTAGACCAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
40326890 ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
326 ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
* * *
40326955 GAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGGACAAGCCAGTGAAGATTTTGGACCGTGA
391 GAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGA
*
40327020 GGTTAAGTTACTTAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAG
456 GGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAG
* * * * *
40327085 ACGAAGCCACGTGGGAACCCAAAGAGGCGATGCGATAGTAATACCCTCGTATTTTCTGATCTGGT
521 AAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGT
*
40327150 AAATTTTGAGGTCAAAATTTTGTTAAAGGGGGT
586 AAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * * *
40327183 AGAGTTGTAATGCCC-CAAATATAAGTCTCTAATTTTTGCATGTTTTGAAAAAAAATTGCTTTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAAATTGCTTGTT
* *
40327247 TGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCTTGGGTTCAAGTCTTG
65 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
* * * * *
40327312 GGCTTTGCGCAATTTTTAGTTTTTCTCTTAAAGGAATCTGGACACTGGCAATTAGGCCTTTTATA
130 GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATA
*
40327377 TATTAATACTTGTTTTTTGATACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACC
195 TATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACC
*
40327442 GTGTACAGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATT
260 GTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATT
* * *
40327507 CATGATGTGCTTCACGTCCCCATTCTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGT
325 CATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
* *
40327572 TGAAAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCTAGTGCAGATTTTGGACCGTG
390 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
* * *
40327637 AGGTTAACTTACTGAAGAAGAAAGCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCATAGTTCA
455 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
40327702 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
520 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
40327767 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
585 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
40327801 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAAAAATTGCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
* *
40327865 GCTTTAATGGCTAAGTGATCTGGGTATGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
* *
40327930 CCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCGTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* * *
40327995 ATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCAACTGGTAGGTTTATTGAACCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
* * * *
40328060 TGTACCGAAACATGTGGTATCGATCACTTATTAACTTGAGTTTCCTCT-ATAATTAGACAAGATT
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGA-AATTAGACCAGATT
*
40328124 CATGATGTGCTTCACGTCTCCAAACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
325 CATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
* *
40328189 TGAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAGATTTTGGACCGTG
390 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
*
40328254 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTCATCACAGTTCA
455 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
* * *
40328319 GAAGAAGCCACGTGGGAACCCGAAGAGGTGATGCGAGAGTAATACCCTCATCTTTTCTGACCTAG
520 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
*
40328384 TAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGT
585 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * *
40328418 AGAGTTGTAACGCCCCAAAATTTAAGGCTCTAATTTTTGCATGTTTTGAAAAAAAATGCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
* **
40328483 GCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGTTAAGCCTGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
*
40328548 CCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* *
40328613 ATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTACGTTCATTGAACCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
* * * * * *
40328678 TGTACTGAAACATGTGGGATCGATCGCTTATAAACTTGACTTTCCCCTGAAATTATACCAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
** ** * * * **
40328743 ATGATGTGCTTCACGTCTCCACGCTAAGGCGTTATCGCTCTGATCACGCTCACATAGTACTTGTT
326 ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
* * * * * * *
40328808 GAAAAGATTGAGGTTAGACCAAATCTGACCTTCGGGGAGAAGCCAGTGCAGATTTTGTACCGTGA
391 GAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGA
* * * * * *
40328873 GGTTAAGGTACTGAGGAAGAAATCGATTCCAGTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAG
456 GGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAG
** * * * * *
40328938 AAGAAGTGACGTGGGAACCTGATGATGCGATGCGACAGTAATACCCTCATCTTTTCTGA-CTAGG
521 AAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCT-GG
*
40329002 TAAATTTTGAGG-CTGAAATTTTTTTAAA-GGGGT
585 TAAATTTTGAGGTC-GAAATTTTGTTAAAGGGGGT
* * * * * * *
40329035 AGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATCTTTAGACACAAATTCCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
* * * * *
40329100 ACTTTAATGGCTAAGAGATTTGGCTGTGTATGGGAGTATTTGAGAAGCCAGGGTTCAAGTCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
* * * *
40329165 CCTAGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATTGGCACGTAGGCCTCTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* * * * *** * **
40329230 ATTACTACTTGTTTTATGGCACAAAGAGCCTATTGGACCAGTGGTAGGTTCATCTG-GGCTTACC
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCAT-TGAACCTTACC
* * * * *
40329294 GTGTACT-AAAGCATGTGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACTAGAT
260 GTGTACTGAAA-CATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGAT
* * * ** * *
40329358 TCATGATGTGTTTCACGTCCCCATGCTAAGGCGTTATCGCTCT-ATTCCCACTCACATAGTACTA
324 TCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGA-TCCCACTCAGATAGTACAA
* * * * * * * * * * *
40329422 GTTGGGGAGATTGAGGTTAGGCCGGATCTTACCTTCGAGGCGAAGCTAATGCAAATTTTGTACCG
388 GTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCG
* * * *
40329487 TGGGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT-AGTAGT
453 TGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGT
* * * ** *
40329551 TCAGAAGAAGCCACGTGGGAACCC-AAGGGGGCGATGCAACAACAATACCCTCATCTTTTCTGAC
517 TCAGAAGAAGCCACGTGGGAACCCGAA-GAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGAC
* * * ** *
40329615 CAGGAAAATTTCT-AGGCCGAAATTTCCTTAAAAGGGGT
581 CTGGTAAATTT-TGAGGTCGAAATTTTGTTAAAGGGGGT
* * * * ** *
40329653 AGTGTT-TAACGCGCC-AAAATTTAAGACTCTAATGTTTGCATGTTTAGTCACAAATTGCTTGTT
1 AGAGTTGTAACGC-CCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTT
* *
40329716 TGGTTTAATGGCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
65 TGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG
* * * *
40329781 GCCTTGGTACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTAGCACATAGGCGTTTTATA
130 GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATA
*
40329846 TATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTGCACTGGTAGGTTCATTGAACCTTACC
195 TATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACC
* *
40329911 GTGTACTGTAACATGTGGGACTGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATT
260 GTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATT
*
40329976 CATTATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
325 CATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGT
*
40330041 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCGAGTGCAGATTTTGGACCGTG
390 TGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
*
40330106 AGGTTAAGTTACTAAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
455 AGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCA
* * *
40330171 GAAGAAGCCAAGTTGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGGCCTGG
520 GAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGG
*
40330236 TAAATTTTGAGGTCGAAATTTTTTTAAAGGGGGT
585 TAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* *
40330270 AGAGTAGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
* *
40330335 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGCTCAAGTTTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
* * * *
40330400 CCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACATTGGCACGTAGGCCTTTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* * * * ** * * **
40330465 ATTACTACTTGTTTTATGACACAAAGTGCCTATTGGTCCAGTGGTAGGTTCATGGAGGCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
* * * * * * * *
40330530 TGTACTAAAATATGTGGGACTGATCGCATATAAACTTGAGTTTCCTCTAAAATTAGACTAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
** ** * ** **
40330595 ATGATGTGCTTCACGTCTCCACGCTAAGGCGTTATCGCTCTCATCCCACTCATTTAGTACTTGTT
326 ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
* * * * * **
40330660 GA-AGAGATTGAGGTTAGACCAAATCTGACCTTCGGGGAGAAGCCA-TGCAGATTTTATACCGTG
391 GAGA-AGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTG
* * * *
40330723 AGGTTAAGGTACTGAGGAAGAAAT-TGATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTG
455 AGGTTAAGTTACTGAAGAAGAAATCT-ATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC
* ** * * * * * * *
40330787 AGGAGAAGTGACATGGGAACCTGATGATGCGATGAGACAGTAATACCCTCATCTTTTCTGA-CTA
519 AGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCT-
* * *
40330851 GGTAAATTTTGAGGCCGAAATTTTTTTAAA-AGGGT
583 GGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
* * * * * *
40330886 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATGTTTGCATCTTTAGACACAAATTCCTTGTTT
1 AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
* * * * *
40330951 GCTTTAATGGCTAAGAGATTTGGCTGTGTATGGGAGTGTTTAAGAAGCCAGGGTTCAAATCTTGG
66 GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
* * *
40331016 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATTGGCACGTAGGCCTCTTATAT
131 CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
* * * ** * * ***
40331081 ATTACTACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATCGGGGCTTACCG
196 ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
* * * * *
40331146 TGTACTAAAACATGTGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
261 TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
*
40331211 ATGATGTGCTTCACGTCTCCATGCTAAGGCA-TTATCGCTCTGATC
326 ATGATGTGCTTCACGTCTCCATACTAAGG-ATTTATCGCTCTGATC
40331256 ACGCTCACAG
Statistics
Matches: 7160, Mismatches: 583, Indels: 86
0.91 0.07 0.01
Matches are distributed among these distances:
616 388 0.05
617 2797 0.39
618 1925 0.27
619 1182 0.17
620 868 0.12
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (618 bp):
AGAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTT
GCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG
CCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATAT
ATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCG
TGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTC
ATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTT
GAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGA
GGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAG
AAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTCTTTTCTGACCTGGT
AAATTTTGAGGTCGAAATTTTGTTAAAGGGGGT
Found at i:40332819 original size:617 final size:618
Alignment explanation
Indices: 40331262--40347379 Score: 22087
Period size: 618 Copynumber: 26.1 Consensus size: 618
40331252 GATCACGCTC
* * * * * *
40331262 ACAGTTTAGAATAAGCAACGTGGGAACCCGAAGAGGCGATACGACACTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40331327 TGACCT-GGTAAATCTCGAGGTCAAAATTTTAC-TAAAGGGGGTAGAGTTGTAGCGTCCCAAAAT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTT-CTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
* * * * * * *
40331390 TTAAGTCTCTCATTTTTGCATGTTTTGACACAAATTGCTTGATTGTTTTAATGGCTATGTGATTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* *
40331455 AGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
* * * * *
40331520 TTCTCTTAAATGAATCTAGACACTAGCACATAGGCGTTTTATATATTAATACTTGTTTTATGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* * ** * * * ** * *
40331585 CAAAAAGC-CATTGGTCTAGTGGTAGGTTCGTTGGGCCTTACCGTGTACTGCAACGTGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * * * * * *
40331649 AATCGCTTATAAACTTGAGTTGCCT-TAGAGATTAAACCAGATTAATGATGTGTTTCACATCTCC
389 GATCGCTTATAAACTTGAGTTTCCTCT-GAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * * * * *
40331713 ATGCTAAGGATTTATCTCTTTGATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCT
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
** * * * * * * * *
40331778 AGATCTGACCTTTAAGTAGATGCCAGTACAAATTTTAGACCGTGAGGTTCAGGTACTAAGGTAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* * *
40331843 AATCTATTCCATTAGTCAAAGTTCTTTGTCGTAATC
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * **
40331879 ACGGTTCAGAACAAGCAACGTGGGAACCCGAAT-AGGCGATGCGACAACAATACCCTCATCTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCG-ATGAGGCGATGCGACAGTAATACCCTCATCTTTT
* *
40331943 CTGACCTA-GTAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
65 CTGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
* * * * * * *
40332007 TTAAGGCTCTAATTTTTGCATGTTTTGAAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* ** *
40332072 GGGTGTGTGTGGGAGTGTTTGTTAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
*
40332137 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* **
40332202 CAAAGAGCTTATTTTTCCACTGGTACGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGATT
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
*
40332267 GATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * * * * ** * *
40332332 CGCTAAGGCGTTATCGCTCTGATCACGCTCACATAGTACTTGTTGA-AGAGATTGAGGTTAGACC
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGA-AGATTGAGCTTAGGCC
* * *
40332396 AAATCTGACCTTCGGGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGGTACTGAGGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40332461 AATCGATTCCAGTAGTCAAAGTGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* ** * *
40332497 ACAGTTGAGAAGAAGTGACGTGGGAACCTGATGATGCGATGCGACAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
** * *
40332562 TGACTAACTAAATTTTGAGGCCGAAATTTTTTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
* * * * *
40332626 AAGTCTCTAATGTTTGCATCTTTAGACACAAATTCCTTGTTTACTTTAATGGCTAAGAGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
* * *
40332691 CTGTGTATGGGAGTGTTTGAGAAGCCAGGGTTCAAGTCTTGGCCTAGGCACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * * * *
40332756 CTCTTAAATGAATCTGGTCATTGGCACGTAGGCCTCTTATATATTACTACTTGTTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * *** * * *
40332821 AAGAGCCTATTGGTCCAGTGGTAGGTTCATCGGGGCTTACCGTGTACTAAAACCTGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* * * * * *
40332886 TCGCATATAAAGTTGAGTTTCCTCTGAAATTAGACTAAATGCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * * *
40332951 CTAAGGCGTTATCGCTCTGATCCCACTCACATAGAACTAGTTGGGGAGATTGAGGTTAGGCCGGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * * * *
40333016 TCTTACCTTCGAGGCGAAGCCAATGCAGATTTTGTACCCTGGGGTTAAGGTACTGAGGAAGAAAT
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
40333081 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
586 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * * **
40333114 GTAGTTCAGAAGAAGCCACGTGGGAACCCAAGGGGGCGATGCAACAACAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * * *
40333179 TGACCAGGAAAATTTCT-AGGCCGAAATTTCCTTAAAAGGGGTAGTGTT-TAACGCCCCAAAATT
66 TGACTAGGTAAATTT-TGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * *
40333242 TAAGACTCTAATGTTTGCATGTTTAGACATAAATTGCTTGTTTGGTTTAAT-GACTAAGTGATTT
130 TAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGA-TAAGTGATTT
* *
40333306 AGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGTACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
* *
40333371 TTCTCTTAAATGAATCCGGACACTAGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
*
40333436 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTTAAACATGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * * *
40333501 GATCACTTATTAACTTGAATTTCCTCTGAAATTAGACCATATTCATGATGTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * * *
40333566 TACTAAGGATTTATCGCTCTGATCCTACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* * *
40333631 GATCTGACTTTCGAGGAGAAGCCAGTGCAAATTTTGGACCGTGAGGTT-AGGTTACTGAAGAAGA
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGG-TACTGAGGAAGA
* * *
40333695 AATCTATTCCATTAGTCAAAGTCCTTTGGCGTGATC
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * *
40333731 ACAGTTCAGAAGAAGCCATGTGGGAACCCGAAGAGGCAATGCGACAGTAATACCCTCGTCTTCTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * *
40333796 TGACCT-GGTAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGTAGGGTTGTACCGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * * * *
40333860 TAAGTCTCTAAT-TTCTGCATGTTTTGA-AAAAAATGCTTGTTTACTTTTATGGCTAAGTGAGTT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* *
40333923 GGGTGTGTATGGGAGTGTTTGAGAAGTCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
*
40333988 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
40334053 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * * * *
40334118 GATCACTTATTAACTCGAGTTTCCTCTGAAATTAGACCAGATTCCTTATGTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * * *
40334183 TAG-TAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGGTTGAGCTTGGGTC
454 T-GCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
*
40334247 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT-AGGTTACTGAAGAAG
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGG-TACTGAGGAAG
* *
40334311 AAATCTATTCCATTAGTCAATGTGCTTTGGCGTAATC
582 AAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* *
40334348 ACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * *
40334413 TGACCT-GGTAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGTAAAGTTGTAACGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * * * *
40334477 TAAGTCTCT-ATGTTTGCATGTTTTGAAAAAAAAATGCTTGTTTGCTTCAATGGCTAAGTGATTC
130 TAAGTCTCTAATGTTTGCATGTTTAG-ACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* * * * *
40334541 AGGTGTGTATGGGAGTGTTTGAGAAGCCTAGATTCAAGTCTTAGCCTTTGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
*
40334606 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40334671 CAATGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * * * *
40334736 GATCACTTATTAACTTGAGTTTCCTTTGAAATTAGACCTGATTCATGATGTGCTTCACATCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * *
40334801 TACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* * *
40334866 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGAA
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAA
* *
40334931 ATCTATTCCATTAGTCAAAGTGCTTTGGCATAATC
584 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * *
40334966 ACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACCGTAATACCCTCGTCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * * *
40335031 TGACCT-GGAAAATTTTAAGGTCAAGATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * *
40335095 TAAGTCTCTAAT-TTCTGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGCCG-TT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAG-TGATT
* *
40335158 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGACCTTTGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
40335223 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
*
40335288 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTA-CGTGTACTGAAACATGTGGGAT
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* *
40335352 CGATCTCTTATAAACTTAAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * *
40335417 ATGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTTTGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* *
40335482 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40335547 AATCGATTACATTAGTCAAAGTGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * * *
40335583 ACAGTTGAGAAGAAGTCACGTGGGAACCTGATGATGCGATACAATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* *
40335648 TGACTAGGTAAATTTCGAGGCTAAAATTTTCTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
40335712 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
** *
40335777 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCACCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * * *
40335842 CTCTTAAACGAATCTGGACATTGGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * ** * *
40335907 AAGAGCCTATTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* * *
40335972 TCGCATATAAACTTGAGTTTCCTCTGAAATTAGACTAGATTCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * *
40336037 CTAAGGCATTATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGTTAGGCCAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * * *
40336102 TCTTACCTTCGAGGAGAAGCCAGTGCAAATTTTGTACCATGGGGTTAAGGTACTGAGGAAGAAAT
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
* *
40336167 CTATTCCATTTGTCAAAATGCTTTGGCGTAATA
586 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * ** *
40336200 GTAGTTTAGAAGAAGCCACGTGGGAACCCG-TGTGGGTGATGCGACAACAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATG-AGGCGATGCGACAGTAATACCCTCATCTTTT
* * *
40336264 CTGACTAGGTAAATTTCT-AGGCCGAAATTTCCTTAAATGGGGTAGAGTTGTAACGCCCCAAAAT
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
40336328 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* * *
40336393 AGGTGTGTATGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
*
40336458 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40336523 TAAAGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * * *
40336588 GATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCTGATTCATGATGTGCTTCACATCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * *
40336653 TACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* * * * *
40336718 GATCTGACCTTCGAGGAGAAGCCAATGCAGATTTTAGACCGTGAGGTTATGTTACTGAAGAAGAA
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAA
* * *
40336783 ATCTATTTCATTAGTCAAAGTGCTTTGGCATAATC
584 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * *
40336818 ACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGCGATGCGACCGTAATACCCTCGTCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * * *
40336883 TGACCT-GGAAAATTTTGAGGTCAAGATTTTGTTCAAGGGGGTAGAGTTGTAACTCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* *
40336947 TAAGTCTCTAA--TTT-C-----T-G---C--A-----TGTTTGCTTTAATGGCTAAGCCG-TTT
130 TAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAG-TGATTT
* *
40336992 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGACCTTTGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
40337057 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40337122 CAAAGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTA-CGTGTACTGAAACATGTGGGATC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* *
40337186 GATCTCTTATAAACTTAAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * * * *
40337251 TGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTTTGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* *
40337316 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAGAA
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAA
* *
40337381 ATCGATTACATTAGTCAAAGTGCTTTGGCGTAATA
584 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * * *
40337416 ACAGTTGAGAAGAAGTCACGTGGGAACCTGATGATGCGATACAATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * *
40337481 TGACTAGGTAAATTTCGAGGCTAAAATTTTCTTAAA-GGGGTAGAGTTGTAACGTCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
*
40337545 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTGTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
** *
40337610 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCACCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * *
40337675 CTCTTAAATGAATCTGGACATTGGCACGTAGGCCTTTTATATATTACTACTT-TTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * ** * *
40337739 AAGAGCCTATTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* * *
40337804 TCGCATATAAACTTGAGTTTCCTCTGAAATTAGACTAGATTCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * *
40337869 CTAAGGCATTATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGTTAGGCCAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * * *
40337934 TCAT-ACCTTCGAGGAGAAGCCAGTGTAAATTTTGTACCATGGGGTTAAGGTACCATGAAGGTAC
521 TC-TGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTA-C-TG-AGG-A-
* *
40337998 TGAGGAAGATCTATTCCATTTGTCAAAATGCTTTGGCGTAATA
580 --A-GAA-ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * ** *
40338041 GTAGTTTAGAAGAAGCCACGTGGGAACCCG-TGTGGGTGATGCGACAACAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATG-AGGCGATGCGACAGTAATACCCTCATCTTTT
* * *
40338105 CTGACTAGGTAAATTTCT-AGGCCGAAATTTCCTTAAATGGGGTAGAGTTGTAACGCCCCAAAAT
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
40338169 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* * *
40338234 AGGTGTGTATGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
* *
40338299 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTCATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40338364 TAAAGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* * *
40338429 GATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCTGATTCATGATGTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * *
40338494 TACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* * *
40338559 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGAA
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAA
* *
40338624 ATCTATTCCATTAGTCAAAGTGCTTTGGCATAATC
584 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * *
40338659 ACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACCGTAATACCCTCGTCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40338724 TGACCT-GGAAAATTTTGAGGTCAAGATTTTGTTCAA-GGGGTAGAGTTGTAACGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * *
40338787 TAAGTCTCTAAT-TTCTGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGCCG-TT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAG-TGATT
* *
40338850 TGGGTGTGTAT-GGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGACCTTTGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
40338914 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
*
40338979 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTA-CGTGTACTGAAACATGTGGGAT
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* *
40339043 CGATCTCTTATAAACTTAAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * *
40339108 ATGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTTTGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* *
40339173 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40339238 AATCGATTACATTAGTCAAAGTGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * * *
40339274 ACAGTTGAGAAGAAGTCACGTGGGAACCTGATGATGCGATACAATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* *
40339339 TGACTAGGTAAATTTCGAGGCTAAAATTTTCTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
40339403 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
** *
40339468 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCACCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * * *
40339533 CTCTTAAACGAATCTGGACATTGGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * ** * *
40339598 AAGAGCCTATTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* * * *
40339663 TCGCATATAAACTTGAATTTCCTCTGAAATTAGACTAGATTCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * *
40339728 CTAAGGCATTATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGTTAGGCCAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * * *
40339793 TCTTACCTTGGAGGAGAAGCCAGTGCAAATTTTGTACCATG-GGTTAAGGTACTGAGGAAGAAAT
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
* *
40339857 CTATTCCATTTGTCAAAATGCTTTGGCGTAATA
586 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * ** *
40339890 GTAGTTTAGAAGAAGCCACGTGGGAACCCG-TGTGGGTGATGCGACAACAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATG-AGGCGATGCGACAGTAATACCCTCATCTTTT
* *
40339954 CTGACTAGGTAAATTTCT-AGGCCGAAA-TTTCTTTAAATGGGGTAGAGTTGTAACGCCCCAAAA
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTC-TTAAAGGGGGTAGAGTTGTAACGCCCCAAAA
40340017 TTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATT
128 TTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATT
* * * *
40340082 TAGGTGTGTGTGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
* *
40340147 TTTCTCTTAAATGAATCCGGACAGTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
* *
40340212 ATAAAGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* * * *
40340277 CGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCTGATTCATGATGTGCTTCACGTATCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * *
40340342 ATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* * *
40340407 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40340472 AATCTATTCCATTAGTCAAAGTGCTTTGGCATAATC
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * *
40340508 ACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATACGACCGTAATACCCTCGTCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40340573 TGACCT-GGAAAATTTTGAGGTCAAGATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * *
40340637 TAAGTCTCTAAT-TTCTGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGCCG-TT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAG-TGATT
* *
40340700 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGACCTTTGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
40340765 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
*
40340830 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTA-CGTGTACTGAAACATGTGGGAT
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* *
40340894 CGATCTCTTATAAACTTAAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * *
40340959 ATGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTTTGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* *
40341024 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40341089 AATCGATTACATTAGTCAAAGTGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * * *
40341125 ACAGTTGAGAAGAAGTCACGTGGGAACCTGATGATGCGATACAATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* *
40341190 TGACTAGGTAAATTTCGAGGCTAAAATTTTCTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
40341254 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
** *
40341319 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCACCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * *
40341384 CTCTTAAATGAATCTGGACATTGGCACGTAGGCCTTTTATATATTACTACTT-TTTTTATGACAC
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTT-TGACAC
* ** * * ** * *
40341448 AAAGAGCCTATTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACTG
325 AAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCG
* * *
40341513 ATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACTAGATTCATGATGTGTTTCACGTCTCCAT
390 ATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCAT
* * * * * *
40341578 GCTAAGGCATTATCGCTCTGATCCCACTCAGATAGTACTAGATGGGGAGATTGAGGTTAGGCCAG
455 GCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAG
* * * * * *
40341643 ATCTTACCTTGGAGGAGAAGCCAGTGCAAATTTTGTACCATGGGGTTAAGGTACTGAGGAAGAAA
520 ATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAA
* *
40341708 TCTATTCCATTTGTCAAAATGCTTTGGCGTAATA
585 TCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * ** *
40341742 GTAGTTTAGAAGAAGCCACGTGGGAACCCG-TGTGGGTGATGCGACAACAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATG-AGGCGATGCGACAGTAATACCCTCATCTTTT
* * *
40341806 CTGACTAGGTAAATTTCT-AGGCCGAAATTTCCTTAAATGGGGTAGAGTTGTAACGCCCCAAAAT
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
40341870 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* * *
40341935 AGGTGTGTATGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
*
40342000 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40342065 TAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGATC
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* *
40342130 GATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * *
40342195 TAG-TAAGGATTTATCGCTCCGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCC
454 T-GCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* * * *
40342259 AGATCTGACCTTCGAGGAAAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40342324 AATCTATTCCATTAGTCAAAGTGCTTTGGCATAATC
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * *
40342360 ACAGTTCAGAAGAAGCGACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40342425 TAACCT-GGTAAATTTTGAGGTCAAAATTTTGTTCAA-GGGGTAGAGTTGTAACTCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * *
40342488 TAAGTCTCTAAT-TTCTGCATGTTTTGAAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTCG-TT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGT-GATT
*
40342551 TGGGTGTG-ATTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGT
193 TGGGTGTGTA-TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGT
* *
40342615 TTTTCTCTTAAATGAATCCGAACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGA
257 TTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGA
*
40342680 CACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTAAAACATGTGGGA
322 CACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGA
* * * *
40342745 TCGATCTCTTATAAACTTAAGTTTCCTCTGAAATTACACCAGATTCATGATGTGCTTCACGTCTC
387 CCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTC
* * * * * * * *
40342810 CATCCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACCAGTTGAGAACATTAAGCTTTGGC
452 CATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGC
* * * * *
40342875 CAGATCTGATCTTTGAGGAGAAGCCAGTACAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAG
517 CAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAG
* * *
40342940 AAATCGATTCCATTAGACAAAGTGCTTTGGCATAATA
582 AAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** ** * ** * * *
40342977 ACAGTGGAGAAGAAGTAACGTGGAAACTTGATGATGCGATACGATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40343042 TGACTAGGTAAATTTCGAGTCTAAAATTTTCTTAAATGGGGTAGAGTTGTAACGCCCCATAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
*
40343107 AAGTCTCTACTGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
* *
40343172 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * * * *
40343237 CTCTTAAATGAATTTAGACATTGGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * * ** * *
40343302 AAGAGCCTATTGGTCCAGTGGTAGGTTTATCGAGGCTTACCGTGTACTAAAACATGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* *
40343367 TCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * *
40343432 CTAAGGCATTATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGTTAGGCCAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * *
40343497 TCTTACCTTCGAGGAGAAGCCAGTGCAAATTTTGTACCATG-GGTTTAAGGTACTGAGGAAGAAA
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG-TTAAGGTACTGAGGAAGAAA
* * *
40343561 TCAATTCCATTTGTCAAAATGCTTTGGCGTAATA
585 TCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * ** *
40343595 GTAGTTTAGAAGAAGCCACGTGGAAACTCGAGTG-GGCGATGCGACAACAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGA-TGAGGCGATGCGACAGTAATACCCTCATCTTTT
* * * *
40343659 CTGACTAGGTAAATTTCT-AGGCCGACA-TTTCTTTAAATGGGGTAGAGTTGTAACGCCCTAAAA
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTC-TTAAAGGGGGTAGAGTTGTAACGCCCCAAAA
* *
40343722 TTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGATAAGTGATT
128 TTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATT
* * *
40343787 TAGGTGTGTATGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
* *
40343852 TTTTTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
* * *
40343917 ATAAAGAGCTTATTTTTCCACTGGTAGGTTCATTAAACCTTACCGTGTACTGAAACATGTGGGAT
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* *
40343982 CGATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACGTCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * *
40344047 ATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* * * * *
40344112 AGATCTGACCTTCGAAGAAAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40344177 AATCTATTCCATTAGTCAAAGTGATTTGGCGTAATC
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * *
40344213 ACAGTTCAGAAGAAGCGACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * *
40344278 AGACCT-GGTAAATTTTGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATT
66 TGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * * * * *
40344342 TAAGTCTCTAAT-TTCTGCATGTTTTGAAAAAAAATGCTTGTTTGCTTTAATGGCTAAGCCG-TT
130 TAAGTCTCTAATGTT-TGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAG-TGATT
*
40344405 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTT
193 TGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTT
** * * *
40344470 TTTCTCTTAAATGAATCCAGACACTGGCACTTCGGCCTTTTATATATTAATTCTTGTTTTTTGAA
258 TTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGAC
*
40344535 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAT
323 ACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGAC
* * * *
40344600 CGATCTCTTATAAACTTAAGTTTCTTCTGAAATTACACCAGATTCATGATGTGCTTCACGTCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * * *
40344665 ATGCTAAGGCGTTATCGCTCTCATCCCACTAAAATAGTACAAGTTGAGAACATTGAGCTTTGGCC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCC
* *
40344730 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAGGAAGA
518 AGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGA
* *
40344795 AATCGATTCCATTAGTCAAAATGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * * * *
40344831 ACAGTTAAGAAGAAGTCACGTGGGAACCTGATGATGCGATACGATAGTAATACCCTTATCTTCTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* * * * *
40344896 TGACTAGGTAAACTTCGTGGCTAAAATTTTCCTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
40344961 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
*
40345026 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* *
40345091 CTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACATA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* *
40345156 AATAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGATCGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* * *
40345221 TCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACGTCTCCATA
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * *
40345286 CTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGCTGAGAACATTGAGCTTTGGCCAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * *
40345351 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGGGGAAGAAAT
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
* *
40345416 CGATTCCATTAGTCAAAGTGCTTTGGCATAATA
586 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * * * * *
40345449 ACAGTTGAGAAGAAGTCACGTGGGAACCTGATGATGCGATACGATAGTAATACCCTCATCTTTTC
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
* *
40345514 TGACTAGGTAAATTTCGAGGCTAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
66 TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
* *
40345579 AAGTCTCTACTGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGAAAAGTGATTTGG
131 AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
* *
40345644 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTTTT
196 GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
* * * *
40345709 CTCTTAAATGAATCTGGACATTGGCACGTAGGCCTTTTATATATTAGTACTTGTTTTATGACACA
261 CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
* ** * * ** * *
40345774 AAGAGCCTATTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACTGA
326 AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
* *
40345839 TCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATG
391 TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
* * * * * * * *
40345904 CTAAGGCATTATCGCTCTGATCCCACTCATATAGTACTAGATGGGGAGATTGAGGTTAGGACAGA
456 CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
* * * * * * *
40345969 TCTTACCTTCGTGGAGAATCCAGTGAAGATTTTGTACCATGGGGTTAAGGTACTGAGGAAGAAAT
521 TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
* * * *
40346034 CCATTCCATTTGTCAAACTGCTTTAGCGTAATA
586 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * * *
40346067 GTAGTTTAGAAGAAGCCACGTGGGAGCCCGAGTG-GGTGATGCGACAATAATACCCTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGA-TGAGGCGATGCGACAGTAATACCCTCATCTTTT
** * *
40346131 CTGACTAGGTAAATTTCT-AGGCTGAAATTTCCTTAAAAGGGGTAGAGTTGTAACGCCCCAAAAT
65 CTGACTAGGTAAATTT-TGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
* *
40346195 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGATAAGTGACTT
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* * *
40346260 AGGTGTGTATGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
* * *
40346325 TTCTCTTAAATGAATCTGGACACTGGCACGTGGGCATTTTATATATTAATACTTGTTTTTTGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* ** ** ** * *
40346390 CAAAGAGC-CATTGGTCCTGTGGTAGGTTCATTGGGCCTTACCGTGTACT-ACAACGTGTGGGAT
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGA-AACATGTGGGAC
* * ** * *
40346453 CGATCGCTTATAAACTTGACTTTCCTCTGAGATTAGACCTTATTCATGATGTGTTTCACATCTCC
388 CGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCC
* * * * * * *
40346518 ATGCTAAGGCTTTATCTCTTTGATACCAATCACATAGTACTAGTTGAG--GTATTGAGGTTAGGC
453 ATGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAG-ATTGAGCTTAGGC
* * *
40346581 CAGATCTGACCTTCGAGGACATGCCAGTACAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAG
517 CAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAG
*
40346646 AAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATC
582 AAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
* * *
40346683 ACAGTTCAGAAGAAGCAACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCCTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCAT-CTTTT
* * * * *
40346748 -TGACCT-GGTAAATTTCGAGGTCAAAATTTTGTTAAAGGGGGTAGTGTTGTAGC-CCCCAAAAT
65 CTGA-CTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAAT
* * * * * * *
40346810 TTAAGTCTCTAATTTTTCCATGTTTTGACACAAATTGCTTGATTGTTTTAATGGCTAAGTGATTA
129 TTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTT
* *
40346875 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTT
194 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTT
* * * *
40346940 TTCTCTTAAATGAATCTGGACATTGGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACA
259 TTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* * ** * * ** * *
40347005 CAAAGAGCCTGTTGGTCCAGTGGTAGGTTCATCGAGGCTTACCGTGTACTAAAACATGTGGGACT
324 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACC
* *
40347070 GATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCA
389 GATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCA
* * * * * * * *
40347135 TGCTAAGGCGTTATCGCTCTGATCTCACTCACATAGTACTAGATGGGGAGATTGAGGTTAGGCCA
454 TGCTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCA
* * ** *
40347200 GATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCAAG-GGCTTAAGGTACTGAGGAAGG
519 GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG-TTAAGGTACTGAGGAAGA
*
40347264 AATCTATTCCATTAGTCAAAATGCTTTGGCGTAATA
583 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
** * * * * *
40347300 GTAGTTTAGAAGAAGCCACGTGGGAACCCGA-GGGGCTGATGCGACAATAATACCTTCATTTTTT
1 ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGC-GATGCGACAGTAATACCCTCATCTTTT
*
40347364 CTAACTAGGTAAATTT
65 CTGACTAGGTAAATTT
40347380 AAGTCTCTAA
Statistics
Matches: 13764, Mismatches: 1589, Indels: 296
0.88 0.10 0.02
Matches are distributed among these distances:
597 38 0.00
598 310 0.02
599 189 0.01
600 2 0.00
604 1 0.00
605 1 0.00
606 2 0.00
609 2 0.00
610 1 0.00
611 1 0.00
614 3 0.00
615 658 0.05
616 1588 0.12
617 4715 0.34
618 5646 0.41
619 62 0.00
620 2 0.00
623 2 0.00
624 7 0.00
625 112 0.01
626 199 0.01
627 223 0.02
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (618 bp):
ACAGTTCAGAAGAAGCCACGTGGGAACCCGATGAGGCGATGCGACAGTAATACCCTCATCTTTTC
TGACTAGGTAAATTTTGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTT
AAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGG
GTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTT
CTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACA
AAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGTGGGACCGA
TCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATG
CTAAGGCTTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTAGGCCAGA
TCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAAT
CTATTCCATTAGTCAAAGTGCTTTGGCGTAATA
Found at i:40348876 original size:619 final size:618
Alignment explanation
Indices: 40347688--40351249 Score: 5422
Period size: 619 Copynumber: 5.8 Consensus size: 618
40347678 TTCATGATGT
* * * * * * * *
40347688 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGACATGCCAGTACAGA-TTTCGGACCGTGAGGTT
1 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTT-GGACCGTGAGGTT
40347752 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
65 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * * ** *
40347817 AGCAACGTGGGAACCTGAAGAGGCGATGCGACAGCAATACCCTCATATTTT-TTGACCTGGTAAA
130 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTT-ACCAGGTAAA
* * * * *
40347881 TTTCAAGGTCGAAATTTTGTTAAAGGGGGTAGTGTTGTAGAT-CC-CAAAATTTAAGTCTCTAAT
194 TTTCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTA-ATGCCACAAAATTAAAGACTCTAAT
* * * * * * * * *
40347944 TTTTCCATATTTTGACACAAATTTCTTGATTGTTTTAATGGCTATGTGATTTTGGTGTGTATGGG
258 TTTTGCATGTTTTAACAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGG
40348009 AGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGA
323 AGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGA
40348074 ATCTGGACACTGGCACATAGGCATTTTATTTATATATTAATACTTGTTTTATGACACAAAGAGCC
388 ATCTGGACACTGGCACATAGGCA---T-TTTATATATTAATACTTGTTTTATGACACAAAGAGCC
*
40348139 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCCA
449 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCTA
*
40348204 TAAACTTGATTTGCCTATGAAATTAGACCAGGTTCATGATGTGTTTCAGGTCTCCATGCTAAGGC
514 TAAACTTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGC
* *
40348269 ATTATTGCTCTGATCCCACTCACATAGTACAAGTTGAGGA
579 GTTATTGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* *
40348309 GATTAAGGTTAGGCCAGATTTGACTATCAAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40348374 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCA-ATAGA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGA-AGA
*
40348438 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAAGTAAAT
130 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAAT
* * *
40348503 TTTGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCTAATTT
195 TTCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTT
*
40348568 TTGCATGCTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGA
260 TTGCATGTTTTAA-CAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGA
40348633 GTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAA
324 GTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAA
40348698 TCTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
389 TCTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
*
40348763 GTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAAC
454 GTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCTATAAAC
*
40348828 TTGATTTGCCTATGAAATTAGACAAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
519 TTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
* *
40348893 TACTCTGATCCAACTCACATAGTACCAGTTGAGGA
584 TGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* *
40348928 GATTAAGTTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40348993 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCA-ATAGA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGA-AGA
40349057 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAAT
130 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAAT
* * *
40349122 TTTGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCTAATTT
195 TTCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTT
*
40349187 TTGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTTATTTGGGTGTGCATGGGA
260 TTGCATGTTTTAA-CAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGA
* *
40349252 GTGTTTCAGAAGCCTGGGCTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAA
324 GTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAA
*
40349317 TCTGGACATTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
389 TCTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
*
40349382 GTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAAC
454 GTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCTATAAAC
40349447 TTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
519 TTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
* *
40349512 TACTCTGATCCAACTCACATAGTACCAGTTGAGGA
584 TGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* *
40349547 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGCTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* * * * *
40349612 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAATGTGCTTTGGTGTAATCCCAGTTCAAAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
40349677 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
131 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
*
40349742 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
196 TCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
40349807 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
261 TGCATGTTTTAA-CAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
* * *
40349872 TGTTTCAGAAGCCTGGGTTCAGGTCTTGGCCGTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
* * *
40349937 CTAGG-CACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGTCTATTG
390 CT-GGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
* * * *
40350001 GTCCAATGGTAGGTTCATTGGGCCTTACCGTGTACTGAAACATTTCAGACCGATCGCCTATAAAC
454 GTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCTATAAAC
* * * *
40350066 GTGATTTGCCTATGAAATTAGACCTGACTCAAGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
519 TTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
* *
40350131 CGCTCTGATCCCACTCGCATAGTACCAGTTGAGGA
584 TGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
*** * * *
40350166 GATTAAGGTTTCACCAGATTTGACCTTCGAGGAGAAG-TAGTGCAGAGTTTGGACCATGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40350230 AGGTACTGAGGGAGAAATCTATTCCATTAGTCAATGTGCTTTGGCGTAATCACAGTTCAGAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
*
40350295 GCCACGTGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
131 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
* * *
40350360 TTGAGGTCAAAATTTTGTTAAAGAGGGTAGAGTTGTAACGCCACAAAATTAAAGACTCTAATTTT
196 TCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
*
40350425 TGCATGTTTTGACAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAGT
261 TGCATGTTTTAACAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAGT
* * * * * *
40350490 GTTTGAGAAGCTTGGGTTCAAGTCTTGGGCTTGTCACAATTTTTAATTTTTCGCTTAAATGAATC
326 GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAATC
* * * * *
40350555 TGAACACTGGCACTTAGGCCTTTTATACATTAATACTTGTTTTATGACACAATGAGCCTATTGGT
391 TGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* * * ** * * *
40350620 CCAGTAGTAGGTTCATTGGGCCTTA-TCGTGTATTGAAACTTGTGGGACTGATGGCTTATAAACT
456 CCAGTGGTAGGTTCATTGGGCCTTACT-GTGTACTGAAACGTGTCAGACCGATCGCCTATAAACT
* * * *
40350684 TGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATC
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
40350749 GCTCTGATCCCACTCACATAGTACCAGTTGAGGA
585 GCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * *
40350783 GATTGAA-GTTAGGCCAGATCTGACCATCGAGGAGAAGCTAGTGCAAATTTTGTACCGTGAGGTT
1 GATT-AAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTT
* * * * * *
40350847 ATGGTACTGAGGAAGAAACCTATTCCATTAGTCAAAGTGGTTTGGCATAATGACAGTTGAGAAGA
65 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * * * * *
40350912 AGCCACGTA-AGAACCTGAAAAGGCGATGCGATAGCAATACCCTCATCTTTTCTGACCAGGTAAA
130 AGCCACG-AGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAA
* * * ** * * * * *
40350976 TTTCGAGGCCGACATTTCCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATG
194 TTTCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATT
* * * * * *
40351041 TTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGATGTGTATGTGA
259 TTTGCATGTTTTAACAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGA
* *
40351106 GTGTTTGAGGAGCCTGGGTTCAAGTCTTGGCCTTGGTACAATTTTTAGTTTTTC-CCTTAAATGA
324 GTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCC-TAAATGA
* * * * *
40351170 ATCTAGACACTGGCACTTAGGCCTGTGATATATTAATACTTGTTTTATGACACAAAGAGCCTATT
388 ATCTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATT
40351235 GGT-CATGTGGTAGGT
453 GGTCCA-GTGGTAGGT
40351250 CGCGTGTGAG
Statistics
Matches: 2739, Mismatches: 187, Indels: 33
0.93 0.06 0.01
Matches are distributed among these distances:
616 1 0.00
617 343 0.13
618 596 0.22
619 1425 0.52
620 7 0.00
621 202 0.07
622 33 0.01
623 132 0.05
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (618 bp):
GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
TCGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
TGCATGTTTTAACAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAGT
GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAATC
TGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
CCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCGCCTATAAACTT
GATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATTG
CTCTGATCCCACTCACATAGTACCAGTTGAGGA
Found at i:40352454 original size:27 final size:27
Alignment explanation
Indices: 40352392--40352480 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
40352382 AATCATGAGC
* * *
40352392 AAATGACTGAATTATCACTGGAGTGGTA
1 AAATGACCGAATTATCCCTGAAG-GGTA
*
40352420 AAATGACCAAATTATCCCTGAAGGGTA
1 AAATGACCGAATTATCCCTGAAGGGTA
*
40352447 AAATGACCGAATTA-CCCTTATAGGGTA
1 AAATGACCGAATTATCCCTGA-AGGGTA
40352474 AAATGAC
1 AAATGAC
40352481 TATTATACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 5 0.09
27 30 0.56
28 19 0.35
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATGACCGAATTATCCCTGAAGGGTA
Found at i:40352489 original size:27 final size:27
Alignment explanation
Indices: 40352416--40352490 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 27
40352406 TCACTGGAGT
40352416 GGTAAAATGACCAAATTAT-CCCTGAAG
1 GGTAAAATGACC-AATTATACCCTGAAG
*
40352443 GGTAAAATGACCGAA-T-TACCCTTATAG
1 GGTAAAATGACC-AATTATACCCTGA-AG
*
40352470 GGTAAAATGA-CTATTATACCC
1 GGTAAAATGACCAATTATACCC
40352491 CTATGATTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 2 0.05
26 8 0.20
27 31 0.76
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCAATTATACCCTGAAG
Found at i:40352856 original size:27 final size:28
Alignment explanation
Indices: 40352816--40352871 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
40352806 ATTGTATTGA
*
40352816 TTACTATATTGGGCTAAGGCCCACACTG
1 TTACTATAATGGGCTAAGGCCCACACTG
40352844 TTACT-TAATGGGCTAAGGCCCACACTG
1 TTACTATAATGGGCTAAGGCCCACACTG
40352871 T
1 T
40352872 ACTGATACTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (28 bp):
TTACTATAATGGGCTAAGGCCCACACTG
Found at i:40365836 original size:28 final size:28
Alignment explanation
Indices: 40365791--40365890 Score: 139
Period size: 28 Copynumber: 3.5 Consensus size: 28
40365781 GTGCCCTATA
40365791 CAATATCAGT-ACAGTGTGGGCCTTAGCC
1 CAATA-CAGTAACAGTGTGGGCCTTAGCC
*
40365819 CATTACAGTAACAGTGTGGGCCTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
* * *
40365847 CAATATAGTAGCAATGTGGGCCTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
40365875 CAATACAGTAATCAGT
1 CAATACAGTAA-CAGT
40365891 ACAATGCAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.06
28 55 0.89
29 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (28 bp):
CAATACAGTAACAGTGTGGGCCTTAGCC
Found at i:40366269 original size:27 final size:27
Alignment explanation
Indices: 40366239--40366423 Score: 266
Period size: 27 Copynumber: 6.9 Consensus size: 27
40366229 TATAACAGTT
* * *
40366239 ATTTTACCCTATAG-GGGTATTTCTATC
1 ATTTTACCCT-TCGAGGGTATTTCGATA
*
40366266 ATTTTACCCTTCGAGGGTATTTC-AGTC
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
*
40366293 ATTTTACCTTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
40366320 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
40366347 ATTTTACCCTTCGAAGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
40366374 ATTTTACCCTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
40366401 ATTTTACCCTTCGAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
40366424 AGTCCCATTA
Statistics
Matches: 146, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
26 3 0.02
27 142 0.97
28 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:40369365 original size:24 final size:24
Alignment explanation
Indices: 40369270--40369403 Score: 115
Period size: 24 Copynumber: 5.6 Consensus size: 24
40369260 CCCCTCGAGG
* *
40369270 TTAAATGATTGATTTATCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * * * *
40369294 GTAAGTGATTGATTTGTCCGAGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * *
40369318 GTAAATGACTAATTTGTTTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
40369342 TTAAATGACTGATTTGTCTATGAT
1 TTAAATGACTGATTTGTCTGTGAT
*** *
40369366 TGGTATGACTGATTTGTCTGTGAA
1 TTAAATGACTGATTTGTCTGTGAT
**
40369390 TTGTATGACTGATT
1 TTAAATGACTGATT
40369404 CTGAGCATGG
Statistics
Matches: 89, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:40369623 original size:32 final size:31
Alignment explanation
Indices: 40369573--40369680 Score: 112
Period size: 32 Copynumber: 3.4 Consensus size: 31
40369563 TTGCTGTTAT
40369573 GCTACTGATGGCTTTGTGCCAGTCATATTACC
1 GCTACTGATGGCTTTGTGCCA-TCATATTACC
* * * *
40369605 GTTACTG-TAGGCTGTGTGCCTATCATATCACT
1 GCTACTGAT-GGCTTTGTGCC-ATCATATTACC
*
40369637 GCTACTGATGGCTTTGTGCCAATCATATTACT
1 GCTACTGATGGCTTTGTGCC-ATCATATTACC
*
40369669 G-TACTTATGGCT
1 GCTACTGATGGCT
40369681 AGTAGTCATT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
31 11 0.17
32 51 0.80
33 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (31 bp):
GCTACTGATGGCTTTGTGCCATCATATTACC
Found at i:40372086 original size:20 final size:19
Alignment explanation
Indices: 40372057--40372113 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
40372047 AGCTAATAAC
40372057 GAGCTCAATGAGCTGAATT
1 GAGCTCAATGAGCTGAATT
* *
40372076 GAGCTCGAATGAGCTTACTT
1 GAGCTC-AATGAGCTGAATT
40372096 GAGCTCAAGTGAGCTGAA
1 GAGCTCAA-TGAGCTGAA
40372114 CCACATGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 8 0.25
20 24 0.75
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (19 bp):
GAGCTCAATGAGCTGAATT
Found at i:40374066 original size:21 final size:21
Alignment explanation
Indices: 40374042--40374085 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
40374032 GAATCTTTAG
*
40374042 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
40374063 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
40374084 TA
1 TA
40374086 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:40379658 original size:38 final size:38
Alignment explanation
Indices: 40379544--40379686 Score: 142
Period size: 40 Copynumber: 3.7 Consensus size: 38
40379534 GTGCATTCAA
* * * *
40379544 GGTACCAAAGTACAAACAAGGGCACATATGTATACTCAAG
1 GGTACCGAAGTACAAACAA--GCACATATGTACAATCAGG
* * * * *
40379584 GATACCGAAGTACAATCAGGGGCACGTATGTGCAATCAGG
1 GGTACCGAAGTACAAACA--AGCACATATGTACAATCAGG
*
40379624 GGTATCGAAGTACAAACAAGCACATATGTACAATCAGG
1 GGTACCGAAGTACAAACAAGCACATATGTACAATCAGG
* *
40379662 GGTACCAAAGTACAAACAAGGACAT
1 GGTACCGAAGTACAAACAAGCACAT
40379687 GTATGTGCAA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
38 39 0.47
40 44 0.53
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (38 bp):
GGTACCGAAGTACAAACAAGCACATATGTACAATCAGG
Found at i:40379673 original size:78 final size:79
Alignment explanation
Indices: 40379551--40379699 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 79
40379541 CAAGGTACCA
* * * * * *
40379551 AAGTACAAACAAGGGCACATATGTATACTCAAGGATACCGAAGTACAATCAGGGGCACGTATGTG
1 AAGTACAAACAA-GGCACATATGTACAATCAAGGATACCAAAGTACAAACAAGGACACGTATGTG
40379616 CAATCAGGGGTATCG
65 CAATCAGGGGTATCG
* * *
40379631 AAGTACAAACAA-GCACATATGTACAATCAGGGGTACCAAAGTACAAACAAGGACATGTATGTGC
1 AAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAAGGACACGTATGTGC
40379695 AATCA
66 AATCA
40379700 TCAATAATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
78 48 0.80
80 12 0.20
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (79 bp):
AAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAAGGACACGTATGTGC
AATCAGGGGTATCG
Found at i:40387253 original size:50 final size:48
Alignment explanation
Indices: 40387214--40387355 Score: 167
Period size: 50 Copynumber: 2.9 Consensus size: 48
40387204 TATTGAGGTT
40387214 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATT-G-ACCGAG
* * * *
40387264 ATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGGCAT-TG-ACCGAG
* * * * *
40387314 ATGAGAACTCCCATGTAAGGCCATATCTGGGATATGACATTG
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTG
40387356 GCAGTACAGT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 78 0.99
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (48 bp):
ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGACCGAG
Found at i:40391959 original size:41 final size:41
Alignment explanation
Indices: 40391914--40391996 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
40391904 TCATATAAGT
* *
40391914 AGCATTATGTAGCTACATTCTAACCCACAACCCGTGTGAGC
1 AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
* *
40391955 AGCATCATGTAGCTACATTCCAACCCACAGCTCGTGTGAGC
1 AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
40391996 A
1 A
40391997 TACCGATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (41 bp):
AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
Found at i:40392011 original size:25 final size:25
Alignment explanation
Indices: 40391983--40392074 Score: 103
Period size: 25 Copynumber: 3.7 Consensus size: 25
40391973 TCCAACCCAC
*
40391983 AGCTCGTGTGAGCATACCGATTTAT
1 AGCTCGTGTGAGCATACTGATTTAT
* * * *
40392008 AGCTCATGAGAGCATACTAATGTAT
1 AGCTCGTGTGAGCATACTGATTTAT
* * *
40392033 AGCTCGAGTGAGCATACTGATTCAC
1 AGCTCGTGTGAGCATACTGATTTAT
*
40392058 AGCTCGTATGAGCATAC
1 AGCTCGTGTGAGCATAC
40392075 ATGTACATGA
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACTGATTTAT
Found at i:40395142 original size:28 final size:28
Alignment explanation
Indices: 40395078--40395259 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
40395068 ATATTAAGTC
* *
40395078 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40395105 CGCACACTTAGTGCTATATAATCACACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40395133 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40395161 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
40395189 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
40395217 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
40395246 CGCACACTTAGTGC
1 CGCACACTTAGTGC
40395260 CAATCTCATG
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 21 0.15
28 101 0.72
29 19 0.13
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:40405884 original size:20 final size:20
Alignment explanation
Indices: 40405861--40405921 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
40405851 AGTTTATCTG
40405861 CATTACTGGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
** *
40405881 CATTACTGGCAGCTTGTCTA
1 CATTACTGGTGGCTTGTCCA
* *
40405901 CAATACTAGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
40405921 C
1 C
40405922 TTTTATGGCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (20 bp):
CATTACTGGTGGCTTGTCCA
Found at i:40405931 original size:40 final size:40
Alignment explanation
Indices: 40405854--40405962 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
40405844 TACTTGTAGT
* * *
40405854 TTATCTGCATTACTGGTGGCTTGTCCACATTACTGGCAGC
1 TTATCTACAATACTAGTGGCTTGTCCACATTACTGGCAGC
* * *
40405894 TTGTCTACAATACTAGTGGCTTGTCCACTTTTA-TGGCAGT
1 TTATCTACAATACTAGTGGCTTGTCCAC-ATTACTGGCAGC
* * * *
40405934 TTATCTTCATTACTCGTGGCTTATCCACA
1 TTATCTACAATACTAGTGGCTTGTCCACA
40405963 AACTGGTGTG
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
40 53 0.95
41 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (40 bp):
TTATCTACAATACTAGTGGCTTGTCCACATTACTGGCAGC
Found at i:40412190 original size:21 final size:21
Alignment explanation
Indices: 40412161--40412219 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
40412151 GGAAGAATAT
*
40412161 GACACACGCCCATGTGAAGGC
1 GACAAACGCCCATGTGAAGGC
* * *
40412182 TACAAACGCCCTTAG-GAAGGG
1 GACAAACGCCCAT-GTGAAGGC
*
40412203 GACAAACGCCCGTGTGA
1 GACAAACGCCCATGTGA
40412220 GCAGCTCGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.03
21 28 0.93
22 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12
Consensus pattern (21 bp):
GACAAACGCCCATGTGAAGGC
Found at i:40412451 original size:13 final size:13
Alignment explanation
Indices: 40412433--40412512 Score: 70
Period size: 13 Copynumber: 5.5 Consensus size: 13
40412423 TTTCACACGG
40412433 CCGTGTGAACCAC
1 CCGTGTGAACCAC
*
40412446 CCGTGTGCGACACAC
1 CCGTGTG-AAC-CAC
40412461 GACCGTGTGAACCAC
1 --CCGTGTGAACCAC
40412476 CCGTGTGCAACACAC
1 CCGTGTG-AAC-CAC
40412491 GACCGTGTGAACCAC
1 --CCGTGTGAACCAC
*
40412506 CCATGTG
1 CCGTGTG
40412513 CGACACATGC
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
13 20 0.36
14 5 0.09
15 12 0.21
16 5 0.09
17 14 0.25
ACGTcount: A:0.24, C:0.36, G:0.25, T:0.15
Consensus pattern (13 bp):
CCGTGTGAACCAC
Found at i:40412461 original size:30 final size:30
Alignment explanation
Indices: 40412426--40412538 Score: 165
Period size: 30 Copynumber: 3.8 Consensus size: 30
40412416 TTCCCAATTT
*
40412426 CACACGGCCGTGTGAACCACCCGTGTGCGA
1 CACACGACCGTGTGAACCACCCGTGTGCGA
*
40412456 CACACGACCGTGTGAACCACCCGTGTGCAA
1 CACACGACCGTGTGAACCACCCGTGTGCGA
*
40412486 CACACGACCGTGTGAACCACCCATGTGCGA
1 CACACGACCGTGTGAACCACCCGTGTGCGA
* * *
40412516 CACATGCCCGTGTG-GCCACCCGT
1 CACACGACCGTGTGAACCACCCGT
40412539 ATGATCACGA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
29 7 0.09
30 68 0.91
ACGTcount: A:0.22, C:0.38, G:0.26, T:0.14
Consensus pattern (30 bp):
CACACGACCGTGTGAACCACCCGTGTGCGA
Found at i:40412468 original size:17 final size:17
Alignment explanation
Indices: 40412426--40412499 Score: 74
Period size: 13 Copynumber: 4.8 Consensus size: 17
40412416 TTCCCAATTT
*
40412426 CACACGGCCGTGTG-AA
1 CACACGACCGTGTGCAA
*
40412442 C-CAC--CCGTGTGCGA
1 CACACGACCGTGTGCAA
40412456 CACACGACCGTGTG-AA
1 CACACGACCGTGTGCAA
40412472 C-CAC--CCGTGTGCAA
1 CACACGACCGTGTGCAA
40412486 CACACGACCGTGTG
1 CACACGACCGTGTG
40412500 AACCACCCAT
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
13 14 0.29
14 5 0.10
15 12 0.25
16 3 0.06
17 14 0.29
ACGTcount: A:0.23, C:0.36, G:0.27, T:0.14
Consensus pattern (17 bp):
CACACGACCGTGTGCAA
Found at i:40415458 original size:1 final size:1
Alignment explanation
Indices: 40415452--40415477 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
40415442 ATGGAACTTC
40415452 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
40415478 CAGCACTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:40415460 original size:286 final size:285
Alignment explanation
Indices: 40415013--40415596 Score: 929
Period size: 298 Copynumber: 2.0 Consensus size: 285
40415003 ACTATTTGCC
*
40415013 TGTTCAATAGATGGGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
1 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
*
40415078 CTATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCTCACACTCGATTTGGTTCCTA
66 CCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCT-ACACTCGATTTGGTTCCTA
* * *
40415143 ACAGAAAGCTTTATAATGGAACTTC-AAAAAAAAAAAACTGCACTACAACAAACTGACTAATTTT
130 AAAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAACAGCACTACAACAAACTCACTAATTTT
* * *
40415207 ACAGATCTCTAGGGGTAGTCTATCAAATGAGGGGTTTGGGGAAAAATTTTGTACAACAATGTTGT
195 ACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTTGT
40415272 TCCAAATCAATTTATTTTGTTTGGTT
260 TCCAAATCAATTTATTTTGTTTGGTT
40415298 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTTGTATAATT
1 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCA-TTGTATAATT
40415363 GCCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCT-CACTCGATTTGGTTCCTA
65 GCCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCTACACTCGATTTGGTTCCTA
*
40415427 AAAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAAAAAAAAAAAAAAACAGCACTACATCAA
130 AAAGAAAGCTTTATAATGGAACTTC-------------AAAAAAAAAAAAACAGCACTACAACAA
*
40415492 ATTCACTAATTTTACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGT
182 ACTCACTAATTTTACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGT
40415557 ACAACAATGTTGTTCCAAATCAATTTATTTTGTTTGGTT
247 ACAACAATGTTGTTCCAAATCAATTTATTTTGTTTGGTT
40415596 T
1 T
40415597 TGGCTTTGGC
Statistics
Matches: 274, Mismatches: 10, Indels: 17
0.91 0.03 0.06
Matches are distributed among these distances:
284 42 0.15
285 53 0.19
286 55 0.20
298 124 0.45
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (285 bp):
TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
CCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCTACACTCGATTTGGTTCCTAA
AAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAACAGCACTACAACAAACTCACTAATTTTA
CAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTTGTT
CCAAATCAATTTATTTTGTTTGGTT
Found at i:40422665 original size:41 final size:41
Alignment explanation
Indices: 40422633--40422712 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
40422623 ATATTTTATT
40422633 TTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
1 TTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
* *
40422674 TTATGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTT
1 TTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTT
40422713 TCCAATTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (41 bp):
TTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
Found at i:40430059 original size:13 final size:13
Alignment explanation
Indices: 40430041--40430067 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
40430031 TTATATAAAG
40430041 AAAGAGCCTTGTT
1 AAAGAGCCTTGTT
40430054 AAAGAGCCTTGTT
1 AAAGAGCCTTGTT
40430067 A
1 A
40430068 TTATAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AAAGAGCCTTGTT
Found at i:40434854 original size:18 final size:20
Alignment explanation
Indices: 40434831--40434868 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40434821 ATAAAAATAT
40434831 CAAATA-TATAT-AAATTCA
1 CAAATATTATATAAAATTCA
40434849 CAAATATTATATAAAATTCA
1 CAAATATTATATAAAATTCA
40434869 AGACATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
CAAATATTATATAAAATTCA
Found at i:40441522 original size:91 final size:88
Alignment explanation
Indices: 40441370--40441554 Score: 271
Period size: 91 Copynumber: 2.1 Consensus size: 88
40441360 CTTAAGGGTG
* *
40441370 TAAAAAGCCCTCAAAAATTTTCAAAAAACGCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTGG
1 TAAAAAGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTGG
* *
40441435 GTACTTGAACTTTCAAAATGCAT
66 GTACTTGAACTATCAAAAAGCAT
** *
40441458 TAAAAAGGCCCTCAAACTTTTTCAAAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCATTCAAT
1 TAAAAA-GCCCTCAAAAATTTTC--AAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAAT
40441523 TGGGTACTTGAACTATCAAAAAGCAT
63 TGGGTACTTGAACTATCAAAAAGCAT
*
40441549 CAAAAA
1 TAAAAA
40441555 AACCCTTTAA
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
88 6 0.07
89 14 0.16
91 66 0.77
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (88 bp):
TAAAAAGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTGG
GTACTTGAACTATCAAAAAGCAT
Found at i:40442136 original size:96 final size:92
Alignment explanation
Indices: 40442021--40442209 Score: 254
Period size: 96 Copynumber: 2.0 Consensus size: 92
40442011 TAACGGTCAA
* * ** *
40442021 AGGGTCTTTTTGATGCATTTTGGCAGTTCAAATATCCAATTAAGTGTAAAAAAAAAAAAAG-AGC
1 AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTG--AAAAAAAAAAAAGTAG-
40442085 AAGGGCTTAATTGCTTTTTTTGAAAAAGTTTG
63 -A-GGCTTAATTGCTTTTTTTGAAAAAGTTTG
* * *
40442117 AGGGACTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAAGTAGAGG
1 AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTGAAAAAAAAAAAAGTAGAGG
40442182 CTTAATTGCTTTTTTTGAAAAAGTTTG
66 CTTAATTGCTTTTTTTGAAAAAGTTTG
40442209 A
1 A
40442210 AAGCTTTTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
92 30 0.36
93 1 0.01
94 12 0.14
95 2 0.02
96 39 0.46
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (92 bp):
AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTGAAAAAAAAAAAAGTAGAGG
CTTAATTGCTTTTTTTGAAAAAGTTTG
Found at i:40444983 original size:16 final size:17
Alignment explanation
Indices: 40444956--40445003 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
40444946 AATGTACAAC
* *
40444956 ATTATAATATAAATCAA
1 ATTATTATATAAATAAA
*
40444973 A-TATTATATAATTTAAA
1 ATTATTATATAA-ATAAA
40444990 ATTATTATATAAAT
1 ATTATTATATAAAT
40445004 GTATTTTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.36
17 6 0.24
18 10 0.40
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTATATAAATAAA
Found at i:40445000 original size:34 final size:36
Alignment explanation
Indices: 40444937--40445003 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
40444927 AATTTATTGT
40444937 ATATAATATAATGTACAACATTATAATATAAATCAA
1 ATATAATATAATGTACAACATTATAATATAAATCAA
* * *
40444973 ATATTATATAATTTA-AA-ATTATTATATAAAT
1 ATATAATATAATGTACAACATTATAATATAAAT
40445004 GTATTTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 13 0.46
35 2 0.07
36 13 0.46
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (36 bp):
ATATAATATAATGTACAACATTATAATATAAATCAA
Found at i:40446959 original size:9 final size:9
Alignment explanation
Indices: 40446945--40446975 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
40446935 GTTAAACGAA
40446945 TCGAGTTAT
1 TCGAGTTAT
*
40446954 TCGAGTTAA
1 TCGAGTTAT
40446963 TCGAGTTAT
1 TCGAGTTAT
40446972 TCGA
1 TCGA
40446976 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:40452498 original size:9 final size:9
Alignment explanation
Indices: 40452484--40452568 Score: 125
Period size: 9 Copynumber: 9.4 Consensus size: 9
40452474 TTTGGTTAAA
40452484 AATTAACCG
1 AATTAACCG
*
40452493 AATTAACCA
1 AATTAACCG
*
40452502 AATTACCCG
1 AATTAACCG
40452511 AATTAACCG
1 AATTAACCG
*
40452520 AATTACCCG
1 AATTAACCG
40452529 AATTAACCG
1 AATTAACCG
*
40452538 AATTATCCG
1 AATTAACCG
40452547 AATTAACCG
1 AATTAACCG
*
40452556 AATTAACCA
1 AATTAACCG
40452565 AATT
1 AATT
40452569 GAATCACTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 67 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:40464415 original size:101 final size:101
Alignment explanation
Indices: 40464238--40464421 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
40464228 AGTTGCTAGG
* * *
40464238 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGAAAGGTCACATGTATAGTAC
40464303 TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
66 TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
* * *
40464339 TCACGTGTGTAGTACTA-GTGTAGGCTACTACGTGTATCG-GATGAAAATGGTCACATGTATAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATG-AAA-GGTCACATGTATAGT
**
40464402 ACTATGTGTAGGCTACTATG
64 ACTATGTCCAGGCTACTATG
40464422 TGAATCGAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 3 0.04
100 22 0.30
101 48 0.66
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGAAAGGTCACATGTATAGTAC
TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
Found at i:40477270 original size:68 final size:71
Alignment explanation
Indices: 40477174--40477303 Score: 185
Period size: 68 Copynumber: 1.9 Consensus size: 71
40477164 TTTTAATAGT
* *
40477174 TTAATATTAAATTTAATTTAATACTTATCT-TAATAATATTTT-ATTA-ATTTAATATTAAAGTG
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
40477236 ATTATC
66 ATTATC
** * *
40477242 TTAATATTAAATTAAATTTAATGTTTATCTATTATATTATTTTAATAAGATTTAATATTAAA
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAA
40477304 TTTAATCCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
68 27 0.51
69 10 0.19
70 3 0.06
71 13 0.25
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (71 bp):
TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
ATTATC
Found at i:40481146 original size:50 final size:48
Alignment explanation
Indices: 40481027--40481258 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 48
40481017 ATGCCAAATT
** * * *
40481027 CATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CTGCCAATGC
* * * * *
40481076 CATATCCCAAATATGGTCTTACATGGGACTTCTCATATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC--TGCCAATGC
* ** * *
40481126 CATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCT-TG---GTGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTGCCAATGC
40481170 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC-----TGCCAATGC
* *
40481226 CATGTCCCAGACGTGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCT
40481259 TTACCCAAAT
Statistics
Matches: 144, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
44 36 0.25
47 3 0.02
48 1 0.01
49 30 0.21
50 38 0.26
53 2 0.01
56 34 0.24
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTGCCAATGC
Found at i:40488700 original size:50 final size:48
Alignment explanation
Indices: 40488581--40488804 Score: 145
Period size: 50 Copynumber: 4.5 Consensus size: 48
40488571 ATGCCAAATT
* **
40488581 CATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGA-GCTTCTAATACTGCCAATGC
* * * *
40488630 CATATCCCAAATATGGTCTTACATGGGA-CTTCTAATATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATA-C--TGCCAATGC
* ** * * *
40488680 CATGTCCTAGACATGGTCTTACGGGGGA-CCTCTCAT-CTTG---GTGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATAC-TGCCAATGC
* *
40488724 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCT-TC-TAA--T--A--CTGCCAATGC
*
40488780 CATGTCCCAGACGTGGTCTTACATG
1 CATGTCCCAGACATGGTCTTACATG
40488805 AGATCTCTTT
Statistics
Matches: 134, Mismatches: 25, Indels: 25
0.73 0.14 0.14
Matches are distributed among these distances:
44 28 0.21
45 1 0.01
46 2 0.01
47 10 0.07
48 2 0.01
49 26 0.19
50 36 0.27
53 2 0.01
56 27 0.20
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATACTGCCAATGC
Found at i:40490887 original size:138 final size:138
Alignment explanation
Indices: 40490728--40491012 Score: 471
Period size: 138 Copynumber: 2.1 Consensus size: 138
40490718 CAAGAAGATA
*
40490728 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATATAT
1 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
* * * *
40490793 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTT
66 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
*
40490858 TTGGAAAG
131 TCGGAAAG
** * *
40490866 AATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
1 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
*
40490931 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTT
66 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
40490996 TCGGAAAG
131 TCGGAAAG
40491004 AATATAATT
1 AATATAATT
40491013 CATTTTTCTA
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 136 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (138 bp):
AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
TCGGAAAG
Found at i:40493683 original size:27 final size:27
Alignment explanation
Indices: 40493572--40493685 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
40493562 GTATAACCTT
*
40493572 GTGTTTAGTGTCTCGATGGACTACCCC
1 GTGTTTAGTGTCTCGATGGACTATCCC
*
40493599 GTGTTTAGCGTCTCGATGGACTA-CCTC
1 GTGTTTAGTGTCTCGATGGACTATCC-C
* * * * * ***
40493626 ATGTTTACTATTTTGATGGACTATTTT
1 GTGTTTAGTGTCTCGATGGACTATCCC
* *
40493653 GTGTTCAGTGTCTCGATAGACTATCCC
1 GTGTTTAGTGTCTCGATGGACTATCCC
40493680 GTGTTT
1 GTGTTT
40493686 GTTGTCCTAG
Statistics
Matches: 64, Mismatches: 21, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
26 2 0.03
27 62 0.97
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (27 bp):
GTGTTTAGTGTCTCGATGGACTATCCC
Found at i:40493712 original size:81 final size:81
Alignment explanation
Indices: 40493570--40493728 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 81
40493560 GAGTATAACC
* *
40493570 TTGTGTTTAGTGTCTCGATGGACTACCCCGTGTTTAGCGTCTCGATGGACTACCTCATGTTTACT
1 TTGTGTTCAGTGTCTCGATAGACTACCCCGTGTTTAGCGTCTCGATGGACTACCTCATGTTTACT
* *
40493635 ATTTTGATGGACTATT
66 ATCTTGATCGACTATT
* * * * *
40493651 TTGTGTTCAGTGTCTCGATAGACTATCCCGTGTTT-GTTGTC-CTA-GCGTACTGCCTCGTGTTT
1 TTGTGTTCAGTGTCTCGATAGACTACCCCGTGTTTAG-CGTCTCGATG-G-ACTACCTCATGTTT
40493713 ACTATCTTGATCGACT
63 ACTATCTTGATCGACT
40493729 CTCTATGTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
79 1 0.02
80 4 0.06
81 61 0.92
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (81 bp):
TTGTGTTCAGTGTCTCGATAGACTACCCCGTGTTTAGCGTCTCGATGGACTACCTCATGTTTACT
ATCTTGATCGACTATT
Found at i:40504373 original size:14 final size:14
Alignment explanation
Indices: 40504354--40504383 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
40504344 ATCCCTAGAC
40504354 AAATAGACAAGTGG
1 AAATAGACAAGTGG
40504368 AAATAGACAAGTGG
1 AAATAGACAAGTGG
40504382 AA
1 AA
40504384 GTCTCTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.27, T:0.13
Consensus pattern (14 bp):
AAATAGACAAGTGG
Found at i:40506426 original size:3 final size:3
Alignment explanation
Indices: 40506420--40506460 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
40506410 GTTGGAGCCA
40506420 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
40506461 AGCCACTGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:40520063 original size:40 final size:39
Alignment explanation
Indices: 40520011--40520140 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
40520001 TAACTCATTC
* *
40520011 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
40520051 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
40520091 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA-A
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
40520130 AATACCTTCGG
1 AATGCCTTCGG
40520141 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.16
40 66 0.84
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:40520073 original size:79 final size:80
Alignment explanation
Indices: 40519974--40520193 Score: 193
Period size: 79 Copynumber: 2.8 Consensus size: 80
40519964 CTCGTTCAAG
* * ** * *
40519974 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
40520037 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACGAA
* * *
40520053 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
*
40520118 AATAACTCGCA-AAA
66 AATAACTCGCACGAA
* * ** * * *
40520132 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
40520194 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 6 0.05
79 74 0.63
80 37 0.32
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACGAA
Found at i:40520125 original size:80 final size:79
Alignment explanation
Indices: 40520014--40520193 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 79
40520004 CTCATTCAAT
* * *
40520014 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCA-AAATACCTTC-GGATCTTAACCCGGATA-
*
40520077 TAGT-A-TCTCGCACAAA
63 TAGTCACT-TAGCACAAA
**
40520093 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCAAAATACCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCAAAATACCTTCGGATCTTAACCCGGATAT
40520157 AGTCACTTAGCACAAA
64 AGTCACTTAGCACAAA
*
40520173 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
40520194 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 3 0.03
79 45 0.51
80 39 0.44
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCAAAATACCTTCGGATCTTAACCCGGATATAG
TCACTTAGCACAAA
Found at i:40520153 original size:39 final size:40
Alignment explanation
Indices: 40520015--40520193 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
40520005 TCATTCAATG
* *
40520015 CCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATG-
1 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCAC-AAAGA
* * *
40520055 CCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
*
40520095 CCTTCGGGACTTAACCCGGAATTAATAACTCGCA-AAATA
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
** * * *
40520134 CCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAAG-
1 CCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAAGA
*
40520174 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
40520194 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
38 5 0.04
39 27 0.23
40 78 0.67
41 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
Found at i:40534724 original size:40 final size:39
Alignment explanation
Indices: 40534660--40534871 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
40534650 TCTTCGGAAT
* *
40534660 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
40534699 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
40534739 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
40534779 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
40534819 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
40534859 TTAGCCCGGATAT
1 TTAGCCCGGATAT
40534872 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:40534787 original size:80 final size:80
Alignment explanation
Indices: 40534660--40534871 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
40534650 TCTTCGGAAT
* * * * *
40534660 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
40534724 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
40534739 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
40534804 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
40534819 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
40534872 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:40536807 original size:21 final size:21
Alignment explanation
Indices: 40536757--40536808 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
40536747 TAGCTTATTA
*
40536757 GCATGATTAAATTGTCTTAAT
1 GCATGATTTAATTGTCTTAAT
40536778 GCATG-TTTAATGTGTCTTAA-
1 GCATGATTTAAT-TGTCTTAAT
*
40536798 GGATGATTTAA
1 GCATGATTTAA
40536809 GGCAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (21 bp):
GCATGATTTAATTGTCTTAAT
Found at i:40546916 original size:44 final size:44
Alignment explanation
Indices: 40546868--40546958 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
40546858 GAGTTCATCC
40546868 TTGATCAAATGTCTATCTTTTTCCACATGTTTGGTTCTTTCATG
1 TTGATCAAATGTCTATCTTTTTCCACATGTTTGGTTCTTTCATG
40546912 TTGATCAAATGTCTATCTTTTTCCACATGTTTGGTTCTTTCATG
1 TTGATCAAATGTCTATCTTTTTCCACATGTTTGGTTCTTTCATG
40546956 TTG
1 TTG
40546959 CACTACATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (44 bp):
TTGATCAAATGTCTATCTTTTTCCACATGTTTGGTTCTTTCATG
Found at i:40565688 original size:20 final size:20
Alignment explanation
Indices: 40565663--40565703 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
40565653 CTAGCTAGGG
40565663 CCCCATATCGATGTCTTTGC
1 CCCCATATCGATGTCTTTGC
40565683 CCCCATATCGATGTCTTTGC
1 CCCCATATCGATGTCTTTGC
40565703 C
1 C
40565704 AGAATTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.34
Consensus pattern (20 bp):
CCCCATATCGATGTCTTTGC
Found at i:40568542 original size:16 final size:16
Alignment explanation
Indices: 40568521--40568551 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
40568511 AATATGGAAG
40568521 TAATCTTAGAAGATTA
1 TAATCTTAGAAGATTA
40568537 TAATCTTAGAAGATT
1 TAATCTTAGAAGATT
40568552 TGATTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (16 bp):
TAATCTTAGAAGATTA
Found at i:40568595 original size:16 final size:16
Alignment explanation
Indices: 40568557--40568606 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
40568547 AGATTTGATT
40568557 TTGTAATCTTAAAAGA
1 TTGTAATCTTAAAAGA
* *
40568573 TCT-TAATATTAGAAGA
1 T-TGTAATCTTAAAAGA
*
40568589 TTGTAATCTTATAAGA
1 TTGTAATCTTAAAAGA
40568605 TT
1 TT
40568607 AGATTTTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (16 bp):
TTGTAATCTTAAAAGA
Found at i:40568612 original size:55 final size:55
Alignment explanation
Indices: 40568521--40568624 Score: 172
Period size: 55 Copynumber: 1.9 Consensus size: 55
40568511 AATATGGAAG
* *
40568521 TAATCTTAGAAGATTATAATCTTAGAAGATTTGATTTTGTAATCTTAAAAGATCT
1 TAATATTAGAAGATTATAATCTTAGAAGATTAGATTTTGTAATCTTAAAAGATCT
* *
40568576 TAATATTAGAAGATTGTAATCTTATAAGATTAGATTTTGTAATCTTAAA
1 TAATATTAGAAGATTATAATCTTAGAAGATTAGATTTTGTAATCTTAAA
40568625 GGATTAAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.42
Consensus pattern (55 bp):
TAATATTAGAAGATTATAATCTTAGAAGATTAGATTTTGTAATCTTAAAAGATCT
Found at i:40572416 original size:3 final size:3
Alignment explanation
Indices: 40572369--40572397 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40572359 AAGGGTGCTA
40572369 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
40572398 ATTTGAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:40576405 original size:24 final size:25
Alignment explanation
Indices: 40576378--40576424 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
40576368 AATTATAAAA
40576378 ATATATA-AATATAAAT-ATTTTAGT
1 ATATATATAATA-AAATGATTTTAGT
*
40576402 ATATTTATAATAAAATGATTTTA
1 ATATATATAATAAAATGATTTTA
40576425 AACTTGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (25 bp):
ATATATATAATAAAATGATTTTAGT
Found at i:40579498 original size:21 final size:22
Alignment explanation
Indices: 40579461--40579501 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
40579451 TAGAAGATCC
40579461 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
40579483 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
40579502 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Found at i:40585400 original size:19 final size:21
Alignment explanation
Indices: 40585376--40585429 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
40585366 AAAAATATGC
*
40585376 AATCTTAGAGATA-ATT-TGT
1 AATCTTAGAGATAGATTCTAT
40585395 AATCTTAGAAGATATGATTCTAT
1 AATCTTAG-AGATA-GATTCTAT
40585418 AATCTTAGAGAT
1 AATCTTAGAGAT
40585430 TTGATTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 5 0.17
22 7 0.23
23 10 0.33
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
AATCTTAGAGATAGATTCTAT
Found at i:40587613 original size:16 final size:16
Alignment explanation
Indices: 40587592--40587625 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
40587582 ATCTTTGAGC
40587592 TTGTGTTAAACTATGT
1 TTGTGTTAAACTATGT
*
40587608 TTGTGTTAGACTATGT
1 TTGTGTTAAACTATGT
40587624 TT
1 TT
40587626 TCAATTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.53
Consensus pattern (16 bp):
TTGTGTTAAACTATGT
Found at i:40587727 original size:58 final size:59
Alignment explanation
Indices: 40587634--40587773 Score: 185
Period size: 58 Copynumber: 2.4 Consensus size: 59
40587624 TTTCAATTGC
** * * * *
40587634 TTTATAATAATTTATAAATTTTTATGATTTTTAATTAATTTCTAATAATTTTTATAATTT
1 TTTATAATTTTTTAT-ATTTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTT
*
40587694 TTT-T-ATATTTTTATATTTTTTATGAATTGTAATTAATTTATAATCATTTTTATAATTT
1 TTTATAAT-TTTTTATATTTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTT
40587752 TTTATAATTTTTTATATTTTTT
1 TTTATAATTTTTTATATTTTTT
40587774 TATACTTCTG
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
58 44 0.63
59 21 0.30
60 5 0.07
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (59 bp):
TTTATAATTTTTTATATTTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTT
Found at i:40587731 original size:39 final size:37
Alignment explanation
Indices: 40587640--40587777 Score: 104
Period size: 39 Copynumber: 3.6 Consensus size: 37
40587630 TTGCTTTATA
* * *
40587640 ATAATTTA-TAA-ATTTTTATGATTTTTAATTAATTTCTA
1 ATAATTTATTAATTTTTTTAT-ATTTTT-A-TAATTTTTT
*
40587678 ATAATTTTTATAATTTTTTTATATTTTTAT-ATTTTTT
1 ATAATTTAT-TAATTTTTTTATATTTTTATAATTTTTT
* *
40587715 ATGAATTGTAATTAA-TTTATAATCATTTTTATAATTTTTT
1 AT-AATT-T-ATTAATTTTTTTAT-ATTTTTATAATTTTTT
*
40587755 ATAATTTTTTATATTTTTTTATA
1 ATAATTTATTA-ATTTTTTTATA
40587778 CTTCTGGAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
37 10 0.12
38 21 0.26
39 23 0.29
40 19 0.24
41 7 0.09
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (37 bp):
ATAATTTATTAATTTTTTTATATTTTTATAATTTTTT
Found at i:40587773 original size:9 final size:10
Alignment explanation
Indices: 40587634--40587777 Score: 93
Period size: 10 Copynumber: 14.6 Consensus size: 10
40587624 TTTCAATTGC
**
40587634 TTTATAATAA
1 TTTATAATTT
*
40587644 TTTATAAATT
1 TTTATAATTT
*
40587654 TTTATGATTT
1 TTTATAATTT
*
40587664 TTAATTAATTT
1 TTTA-TAATTT
* *
40587675 CTAATAA-TT
1 TTTATAATTT
40587684 TTTATAATTT
1 TTTATAATTT
40587694 TTT-T-ATATT
1 TTTATAAT-TT
40587703 TTTAT-ATTT
1 TTTATAATTT
40587712 TTTATGAA-TT
1 TTTAT-AATTT
* *
40587722 GTAATTAATTT
1 TTTA-TAATTT
* * *
40587733 ATAATCA-TT
1 TTTATAATTT
40587742 TTTATAATTT
1 TTTATAATTT
40587752 TTTATAATTT
1 TTTATAATTT
*
40587762 TTTATATTTT
1 TTTATAATTT
40587772 TTTATA
1 TTTATA
40587778 CTTCTGGAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 18
0.75 0.13 0.13
Matches are distributed among these distances:
8 2 0.02
9 26 0.24
10 64 0.60
11 15 0.14
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:40588927 original size:16 final size:16
Alignment explanation
Indices: 40588903--40588934 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
40588893 TAACTGTTAT
*
40588903 AAATTACATAATACAA
1 AAATAACATAATACAA
40588919 AAATAACATAATACAA
1 AAATAACATAATACAA
40588935 TATATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (16 bp):
AAATAACATAATACAA
Found at i:40590400 original size:21 final size:20
Alignment explanation
Indices: 40590374--40590416 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
40590364 AATATTAATA
*
40590374 AATTTAACATTAAAATAAATT
1 AATTTAACAAT-AAATAAATT
*
40590395 AATTTAACAATATATAAATT
1 AATTTAACAATAAATAAATT
40590415 AA
1 AA
40590417 ATAATCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTTAACAATAAATAAATT
Found at i:40590440 original size:19 final size:19
Alignment explanation
Indices: 40590416--40590457 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
40590406 ATATAAATTA
40590416 AATAATCTATAAATATATT
1 AATAATCTATAAATATATT
40590435 AATAATCTATAAATATATT
1 AATAATCTATAAATATATT
40590454 AATA
1 AATA
40590458 TTAATTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AATAATCTATAAATATATT
Found at i:40591722 original size:13 final size:13
Alignment explanation
Indices: 40591704--40591769 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 13
40591694 AAATTTTTTT
*
40591704 CTAAATATTATCC
1 CTAAATATTATCA
*
40591717 CTAAATA--A-CC
1 CTAAATATTATCA
*
40591727 CTAAATATTATTA
1 CTAAATATTATCA
*
40591740 CTAAATACT-T--
1 CTAAATATTATCA
40591750 CTAAATATTATCA
1 CTAAATATTATCA
40591763 CTAAATA
1 CTAAATA
40591770 ATTCAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
10 17 0.40
11 2 0.05
12 2 0.05
13 22 0.51
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:40591778 original size:23 final size:23
Alignment explanation
Indices: 40591702--40591778 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
40591692 CTAAATTTTT
*
40591702 TTCTAAATATTATCCCTAAATAA
1 TTCTAAATATTATCACTAAATAA
** * *
40591725 CCCTAAATATTATTACTAAATAC
1 TTCTAAATATTATCACTAAATAA
40591748 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
40591771 TTCAAAAT
1 TTCTAAAT
40591779 TTAAAAATTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:40597291 original size:184 final size:184
Alignment explanation
Indices: 40596982--40597352 Score: 742
Period size: 184 Copynumber: 2.0 Consensus size: 184
40596972 GTTGAAAGTA
40596982 AAAAAAAAAGAACTAAAATAGCATAACGGAGCATTGACGTAGGAAGGGAGAAAAAAATAAAGAAT
1 AAAAAAAAAGAACTAAAATAGCATAACGGAGCATTGACGTAGGAAGGGAGAAAAAAATAAAGAAT
40597047 TTATGAAATGCCAAAGGTAAAGTGTATGTTTAATTGGCTATAACCATTAGGTATTTATACACACT
66 TTATGAAATGCCAAAGGTAAAGTGTATGTTTAATTGGCTATAACCATTAGGTATTTATACACACT
40597112 TTTAGTGATAAAATTTAGTTAAAATTTTCCTAAATATTATCTCTAAATAACCCT
131 TTTAGTGATAAAATTTAGTTAAAATTTTCCTAAATATTATCTCTAAATAACCCT
40597166 AAAAAAAAAGAACTAAAATAGCATAACGGAGCATTGACGTAGGAAGGGAGAAAAAAATAAAGAAT
1 AAAAAAAAAGAACTAAAATAGCATAACGGAGCATTGACGTAGGAAGGGAGAAAAAAATAAAGAAT
40597231 TTATGAAATGCCAAAGGTAAAGTGTATGTTTAATTGGCTATAACCATTAGGTATTTATACACACT
66 TTATGAAATGCCAAAGGTAAAGTGTATGTTTAATTGGCTATAACCATTAGGTATTTATACACACT
40597296 TTTAGTGATAAAATTTAGTTAAAATTTTCCTAAATATTATCTCTAAATAACCCT
131 TTTAGTGATAAAATTTAGTTAAAATTTTCCTAAATATTATCTCTAAATAACCCT
40597350 AAA
1 AAA
40597353 TATTATCACT
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 187 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (184 bp):
AAAAAAAAAGAACTAAAATAGCATAACGGAGCATTGACGTAGGAAGGGAGAAAAAAATAAAGAAT
TTATGAAATGCCAAAGGTAAAGTGTATGTTTAATTGGCTATAACCATTAGGTATTTATACACACT
TTTAGTGATAAAATTTAGTTAAAATTTTCCTAAATATTATCTCTAAATAACCCT
Done.