Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 14 of 211
Found at i:3884000 original size:29 final size:29
Alignment explanation
Indices: 3883959--3884027 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 29
3883949 TTTAATTGAT
* *
3883959 ATTTTACATATTTCTA-TAATTAAATTTAA
1 ATTTTAAAAATTTCTATTAATTAAA-TTAA
* *
3883988 ATTTTAAAAATTTTTATTATTTAAATTAA
1 ATTTTAAAAATTTCTATTAATTAAATTAA
* *
3884017 ACTATAAAAAT
1 ATTTTAAAAAT
3884028 ATTTATCCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 26 0.79
30 7 0.21
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTTTAAAAATTTCTATTAATTAAATTAA
Found at i:3891611 original size:17 final size:17
Alignment explanation
Indices: 3891589--3891622 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3891579 ATCCACTAAT
*
3891589 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
3891606 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
3891623 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:3896238 original size:17 final size:17
Alignment explanation
Indices: 3896216--3896249 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3896206 ATCCACTAAT
*
3896216 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
3896233 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
3896250 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:3897802 original size:22 final size:22
Alignment explanation
Indices: 3897777--3897831 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
3897767 CACTTAAAAA
3897777 TTAA-AAATATATATAAATATTT
1 TTAATAAATAT-TATAAATATTT
* *
3897799 TTAATTAATATTATATATATTT
1 TTAATAAATATTATAAATATTT
3897821 TATAATTAAAT
1 T-TAA-TAAAT
3897832 TTAAATTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 15 0.56
23 8 0.30
24 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATAAATATTATAAATATTT
Found at i:3897826 original size:23 final size:23
Alignment explanation
Indices: 3897782--3897829 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
3897772 AAAAATTAAA
3897782 AATATATATAAATATTTTTAATT
1 AATATATATAAATATTTTTAATT
*
3897805 AATAT-TATATATATTTTATAATT
1 AATATATATAAATATTTT-TAATT
3897828 AA
1 AA
3897830 ATTTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATATATAAATATTTTTAATT
Found at i:3898515 original size:8 final size:9
Alignment explanation
Indices: 3898484--3898512 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
3898474 ATTTAAGTCC
3898484 TTTAAAATT
1 TTTAAAATT
3898493 TTTAAAATT
1 TTTAAAATT
3898502 TTTAAAATT
1 TTTAAAATT
3898511 TT
1 TT
3898513 AAATTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTAAAATT
Found at i:3905110 original size:29 final size:31
Alignment explanation
Indices: 3905056--3905114 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
3905046 ATTTCAAAAT
3905056 TATATATGAACTTTAATTTAATGTGCAATTG
1 TATATATGAACTTTAATTTAATGTGCAATTG
* *
3905087 TATATATTAATTTTAATTT-A-GTGCAATT
1 TATATATGAACTTTAATTTAATGTGCAATT
3905115 ATACACGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 1 0.04
31 17 0.65
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (31 bp):
TATATATGAACTTTAATTTAATGTGCAATTG
Found at i:3909184 original size:30 final size:30
Alignment explanation
Indices: 3909148--3909204 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
3909138 TTATATTCAA
* *
3909148 TATTTTTGTAAGCGCAATACACATAAAAGG
1 TATTTTTGTAAGAGCAATACAAATAAAAGG
3909178 TATTTTTGTAAGAGCAATACAAATAAA
1 TATTTTTGTAAGAGCAATACAAATAAA
3909205 TATAATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (30 bp):
TATTTTTGTAAGAGCAATACAAATAAAAGG
Found at i:3909256 original size:19 final size:18
Alignment explanation
Indices: 3909214--3909259 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
3909204 ATATAATTGT
*
3909214 AATAATTTTTAATTCTTT
1 AATAATTTTTAATTCTTA
* *
3909232 ATTAATTTTGTAATTGTTA
1 AATAATTTT-TAATTCTTA
3909251 AATAATTTT
1 AATAATTTT
3909260 AAAAACTTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (18 bp):
AATAATTTTTAATTCTTA
Found at i:3909419 original size:21 final size:21
Alignment explanation
Indices: 3909371--3909426 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
3909361 CACCGCTGTT
*
3909371 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
3909392 TCCAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
3909413 -CTTAATCTCACCGC
1 TC-TAATCTCACCGC
3909427 CACCGCTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:3909812 original size:23 final size:22
Alignment explanation
Indices: 3909769--3909813 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
3909759 CACAAAAGTT
*
3909769 TATATAATTTACTTTTAATTTA
1 TATATAATTTACTTATAATTTA
*
3909791 TATATAACTTTACTTATGATTTA
1 TATATAA-TTTACTTATAATTTA
3909814 AATTTATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
TATATAATTTACTTATAATTTA
Found at i:3912255 original size:113 final size:111
Alignment explanation
Indices: 3912031--3912336 Score: 474
Period size: 113 Copynumber: 2.8 Consensus size: 111
3912021 GTTAAACAAG
* * *
3912031 AAATCGAAACCCAGCACCTTAGGGCACG-TTTCTCGAATTTTCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
** * * *
3912095 TTG-AAA-TTTTTGGAAGGATATTTAGCTATTTGGTTGAATGAGAA
66 TTGAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * *
3912139 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAATGCAAAACATTGCCATATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
3912204 TTGAAAATTTTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAAA--TTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
3912252 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
3912317 TTGAAAATTTTTTAAAAGGA
66 TTGAAAATTTTTTAAAAGGA
3912337 AAATCTTCAT
Statistics
Matches: 179, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
108 26 0.15
109 35 0.20
110 3 0.02
111 13 0.07
113 102 0.57
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (111 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:3912971 original size:18 final size:17
Alignment explanation
Indices: 3912939--3912973 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
3912929 AAGATATGTA
3912939 TATGTATATAAAAAAAT
1 TATGTATATAAAAAAAT
3912956 TATGTAATATATAAAAAA
1 TATGT-ATATA-AAAAAA
3912974 AATGCGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (17 bp):
TATGTATATAAAAAAAT
Found at i:3914833 original size:44 final size:44
Alignment explanation
Indices: 3914734--3915116 Score: 160
Period size: 44 Copynumber: 8.6 Consensus size: 44
3914724 TCTTTTGTCT
* * * ** *
3914734 ACTCTACTGTAACCTCAGGGAGATAAGA-C-CTGA-TGCAATCT
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCC
*
3914775 ACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCC
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCC
* * * * *
3914819 ACTCTACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGAGGTGATCT
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTAT--GATT---T-T-A----ATCC
* *
3914873 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCC
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCC
* * * * *
3914917 ACTCCACTGTAACTTCAGAGAGATAGGAT-TACT-AGCTTCAATCT
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTA-TGA-TTTTAATCC
** * * ** *
3914961 ACTCCGCTGTAA-TCTCAGGGAGATAAGATCTGA-AATTCTTTGGTCT
1 ACTCTACTGTAACT-TCAGAGAGATAAGATCT-ATGA-T-TTTAATCC
* * *** * * *** *
3915007 GCTCCACTGTAACCAAAGGGAGATAAGA-C-CTGA-TGCGATCT
1 ACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCC
*
3915048 ACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCC
1 ACTCTACTGTAACTTCAGAGAGATAAGAT-CTATGATTTTAATCC
* *
3915092 ACTCCACTGTAACTTCAGGGAGATA
1 ACTCTACTGTAACTTCAGAGAGATA
3915117 GGATAGTGTC
Statistics
Matches: 258, Mismatches: 56, Indels: 53
0.70 0.15 0.14
Matches are distributed among these distances:
41 53 0.21
42 1 0.00
43 11 0.04
44 120 0.47
45 6 0.02
46 28 0.11
48 2 0.01
49 2 0.01
50 2 0.01
53 2 0.01
54 29 0.11
55 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
ACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCC
Found at i:3914940 original size:98 final size:98
Alignment explanation
Indices: 3914771--3914960 Score: 310
Period size: 98 Copynumber: 1.9 Consensus size: 98
3914761 ACCTGATGCA
*
3914771 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCTACTGCAACTTCA
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCA
* *
3914836 GGGAGATAGGATTA-TCGGCTTCAATCTGAGGTG
66 GAGAGATAGGATTACT-AGCTTCAATCTGAGGTG
* * *
3914869 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCACTCCACTGTAACTTCA
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCA
3914934 GAGAGATAGGATTACTAGCTTCAATCT
66 GAGAGATAGGATTACTAGCTTCAATCT
3914961 ACTCCGCTGT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
98 84 0.99
99 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (98 bp):
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCA
GAGAGATAGGATTACTAGCTTCAATCTGAGGTG
Found at i:3915335 original size:218 final size:218
Alignment explanation
Indices: 3914951--3916301 Score: 2317
Period size: 218 Copynumber: 6.2 Consensus size: 218
3914941 AGGATTACTA
* * * * *
3914951 GCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGCTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
** * *
3915016 TAACCAAAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
* *
3915081 TATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
131 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
*
3915146 ATCTCAGGGAGATAAGATTTCTG
196 ATCTCAGGGAGATAAGATCTCTG
* *
3915169 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAGGATCTGAAAATCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
* *
3915234 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
*
3915299 TATTTTAATCCGCTCCACTGTAACTTCATAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
131 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
3915364 ATCTCAGGGAGATAAGATCTCTG
196 ATCTCAGGGAGATAAGATCTCTG
*
3915387 GCTTCAATCTGCTCAACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
* *
3915452 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
3915517 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
131 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
* *
3915582 ATCTTAGGGAGATAAGTTCTCTG
196 ATCTCAGGGAGATAAGATCTCTG
* *
3915605 GCTTCAATCTGCTCTACTGTAACCTGAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
*
3915670 TAACCTCAGGGAGATAATACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGAT-ATG
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCAT-
3915734 TTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGT
130 TTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGT
*
3915799 AATCTCAGGAAGATAAGATCTCTG
195 AATCTCAGGGAGATAAGATCTCTG
* * *
3915823 GCTTCAATCTGCTCCACTGCAACCTCAGGAAGATAAGATCTGAAATTTTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
* * * *
3915888 TAACCTTAGGGAGATAAGACCTGATGTGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
* * *
3915953 TATTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGAGAGTGTCTTCGATCTGCTCCGCTGTA
131 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
3916018 ATCTCAGGGAGATAAGATCTCTG
196 ATCTCAGGGAGATAAGATCTCTG
3916041 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
* * *
3916106 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTATTGTAACTTCAAAGAGATAAGATCATT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
*
3916171 TATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
131 TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
3916236 ATCTCAGGGAGATAAGATCTCTG
196 ATCTCAGGGAGATAAGATCTCTG
*
3916259 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGA
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
3916302 TGCGATCTAC
Statistics
Matches: 1073, Mismatches: 58, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
217 2 0.00
218 1070 1.00
219 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (218 bp):
GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCATT
TATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
ATCTCAGGGAGATAAGATCTCTG
Found at i:3915624 original size:87 final size:86
Alignment explanation
Indices: 3914868--3916471 Score: 722
Period size: 87 Copynumber: 18.4 Consensus size: 86
3914858 AATCTGAGGT
* * * * *** * ** *
3914868 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCACTCCACTGTAACTTC
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* *
3914933 AGAGAGATAGGATTACTAG-CTTC
65 AGGGAGATAAGA-TACT-GTCTTC
* * * * * ***
3914956 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTTGGTCTGCTCCACTGTAAC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAAC
** * * *
3915020 CAAAGGGAGATAAGA-CCTG-ATGC
62 CTCAGGGAGATAAGATACTGTCTTC
* * * *** * ** *
3915043 GATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTAATCCACTCCACTGTAACTT
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACCT
* *
3915107 CAGGGAGATAGGATAGTGTCTTC
64 CAGGGAGATAAGATACTGTCTTC
* *
3915130 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
*
3915195 AGGGAGATAGGAT-CTGAAAATCTTC
65 AGGGAGATAAGATACTG----TCTTC
* * * * * * **
3915220 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTGCTGTAACCTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* * * * *
3915282 AGAGAGATAAGATCCTTTATTTT
65 AGGGAGATAAGATACTGT-CTTC
* * ** * ** * * * *
3915305 AATCCGCTCCACTGTAACTTCATAGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTC
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* *
3915369 AGGGAGATAAGATCTCTGGCTTC
65 AGGGAGATAAGAT-ACTGTCTTC
* * * * ** *
3915392 AATCTGCTCAACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTAAC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAAC
* * *
3915456 CTCAGGGAGATAAGA-CCTG-ATGC
62 CTCAGGGAGATAAGATACTGTCTTC
* ** * *** * * *
3915479 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCAT-TTATTTTAATCCGCTCCACTGTAACTT
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATC-TCTGGCTTCAATCTGCTCCACTGTAACCT
* * *
3915543 CAGAGAGATAGGATAGTGTCTTC
64 CAGGGAGATAAGATACTGTCTTC
* * * * *
3915566 GATCTGCTCCGCTGTAATCTTAGGGAGATAAGTTCTCTGGCTTCAATCTGCTCTACTGTAACCTG
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
3915631 AGGGAGATAAGAT-CTGAAATTCTTC
65 AGGGAGATAAGATACTG----TCTTC
* * * * * * * *
3915656 GGTCTACTCCACTGTAACCTCAGGGAGATAATA-C-CT-GATGCGATCTACTCTACTGTAACCTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* * *
3915718 AGAGAGATAAGATA-TGTTATTTT
65 AGGGAGATAAGATACTG-T-CTTC
* * * * ** * * * *
3915741 AATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTC
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* * *
3915805 AGGAAGATAAGATCTCTGGCTTC
65 AGGGAGATAAGAT-ACTGTCTTC
* * * * ** ** *
3915828 AATCTGCTCCACTGCAACCTCAGGAAGATAAGATCTGAAAT-TTTTCGGTCTACTCCACTGTAAC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAAC
* * *
3915892 CTTAGGGAGATAAGA-CCTGAT-GT-
62 CTCAGGGAGATAAGATACTG-TCTTC
* ** * *** * *
3915915 GATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCTGCTCCACTGTAACTT
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACCT
* * *
3915979 CAGGGAGATAGGAGAGTGTCTTC
64 CAGGGAGATAAGATACTGTCTTC
*
3916002 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
3916067 AGGGAGATAAGAT-CTGAAATTCTTC
65 AGGGAGATAAGATACTG----TCTTC
* * * * * * * * *
3916092 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTATTGTAACTTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
** * * *
3916154 AAAGAGATAAGAT-CATTTATTTT
65 AGGGAGATAAGATAC-TGT-CTTC
* * * ** * * * *
3916177 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTC
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* *
3916241 AGGGAGATAAGATCTCTGGCTTC
65 AGGGAGATAAGAT-ACTGTCTTC
* * * * * * *
3916264 AATCTGCTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTACTGTAACTTC
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* * * * *
3916326 AGAGAGATAAGATCCTTTATTTT
65 AGGGAGATAAGATACTGT-CTTC
* * * ** * * * *
3916349 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTC
1 GATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
* *
3916413 AGGGAGATAAGATCTCTGGCTTC
65 AGGGAGATAAGAT-ACTGTCTTC
*
3916436 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 GATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT
3916472 GAAATATTCA
Statistics
Matches: 1142, Mismatches: 294, Indels: 160
0.72 0.18 0.10
Matches are distributed among these distances:
84 13 0.01
85 228 0.20
86 21 0.02
87 618 0.54
88 62 0.05
89 6 0.01
90 191 0.17
91 3 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (86 bp):
GATCTGCTCCACTGTAACTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
GGGAGATAAGATACTGTCTTC
Found at i:3917551 original size:21 final size:21
Alignment explanation
Indices: 3917525--3917569 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3917515 GGTATTGCAA
3917525 GATCACCAT-ATGCCCCAATCT
1 GATCA-CATCATGCCCCAATCT
* *
3917546 GATCACTTCATGCCCCATTCT
1 GATCACATCATGCCCCAATCT
3917567 GAT
1 GAT
3917570 TAATATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.24, C:0.36, G:0.11, T:0.29
Consensus pattern (21 bp):
GATCACATCATGCCCCAATCT
Found at i:3921219 original size:19 final size:17
Alignment explanation
Indices: 3921197--3921239 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 17
3921187 GTGAAATTTG
3921197 ATGCATGCAATGAAATGCA
1 ATGCATGC-ATGAAATG-A
3921216 ATGCAGATGCATGAAATGA
1 ATGC--ATGCATGAAATGA
3921235 ATGCA
1 ATGCA
3921240 AAAAAGAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
19 9 0.41
20 8 0.36
21 4 0.18
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (17 bp):
ATGCATGCATGAAATGA
Found at i:3922905 original size:111 final size:110
Alignment explanation
Indices: 3922673--3922976 Score: 477
Period size: 111 Copynumber: 2.8 Consensus size: 110
3922663 GTTAAACAAG
* *
3922673 AAATCGAAACCCAGCACCTTAGGGCACG-TTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
** * * *
3922737 TTGAAA-TTTTTGGAAGGATATTTAGCTATTTGGTTGAATGAGAA
66 TTGAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * *
3922781 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAATGCAAAACATTGCCATATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
3922846 TTGAAATTTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAA-TTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
3922892 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
3922957 TTAAAAATTTTTTAAAAGGA
66 TT-GAAATTTTTTAAAAGGA
3922977 AAATCTTCAT
Statistics
Matches: 178, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
108 26 0.15
109 39 0.22
111 110 0.62
112 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (110 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:3923608 original size:21 final size:22
Alignment explanation
Indices: 3923566--3923616 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
3923556 ATTCATGAAA
* *
3923566 ATAAAAGA-TATGTATATGTAT
1 ATAAAAAATTATGTATATATAT
3923587 ATAAAAAATTATGTA-ATATAT
1 ATAAAAAATTATGTATATATAT
*
3923608 AAAAAAAAT
1 ATAAAAAAT
3923617 GCGTTTATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (22 bp):
ATAAAAAATTATGTATATATAT
Found at i:3929840 original size:3 final size:3
Alignment explanation
Indices: 3929834--3929858 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
3929824 AATAATAATT
3929834 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
3929859 AGGGAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:3931622 original size:20 final size:21
Alignment explanation
Indices: 3931572--3931622 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 21
3931562 AAAAAATATA
3931572 TAAATATTTTTAATTAATATTT
1 TAAAT-TTTTTAATTAATATTT
3931594 TATATATTTTTGTAATTAA-A-TT
1 TA-A-ATTTTT-TAATTAATATTT
3931616 TAAATTT
1 TAAATTT
3931623 AGAAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.15
21 1 0.04
22 6 0.23
23 6 0.23
24 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAAATTTTTTAATTAATATTT
Found at i:3932451 original size:18 final size:18
Alignment explanation
Indices: 3932428--3932463 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
3932418 ATGAATATAC
3932428 TAATAAAACAATTTACGA
1 TAATAAAACAATTTACGA
3932446 TAATAAAACAATTTACGA
1 TAATAAAACAATTTACGA
3932464 GAATCACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (18 bp):
TAATAAAACAATTTACGA
Found at i:3937567 original size:21 final size:22
Alignment explanation
Indices: 3937541--3937582 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
3937531 TGACCTTTCC
*
3937541 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
3937562 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
3937583 TATATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:3937568 original size:11 final size:10
Alignment explanation
Indices: 3937541--3937582 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
3937531 TGACCTTTCC
3937541 AAGGTATGGG
1 AAGGTATGGG
*
3937551 TAGGTATGGG
1 AAGGTATGGG
3937561 AAAGGTATGGG
1 -AAGGTATGGG
3937572 CAAGGTATGGG
1 -AAGGTATGGG
3937583 TATATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:3941614 original size:11 final size:11
Alignment explanation
Indices: 3941598--3941628 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
3941588 AGGGATAGGT
3941598 AGGTATGGGAA
1 AGGTATGGGAA
*
3941609 AGGTATGGGCA
1 AGGTATGGGAA
3941620 AGGTATGGG
1 AGGTATGGG
3941629 GTATATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:3943298 original size:42 final size:43
Alignment explanation
Indices: 3943230--3943449 Score: 282
Period size: 43 Copynumber: 5.2 Consensus size: 43
3943220 TTTTAGAAAT
* * *
3943230 AAACGCCACTATAGATCATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
3943273 AAACGCTGCT-TAGCTCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
3943315 AAATGCCGCTATAGATTAAGACATTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
*
3943358 AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
3943401 AAATGCCGCTATAGAACAA-ACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
3943443 AAACGCC
1 AAACGCC
3943450 ACTAAAAACA
Statistics
Matches: 152, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
42 62 0.41
43 90 0.59
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:3943884 original size:43 final size:43
Alignment explanation
Indices: 3943820--3943903 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
3943810 TATTGCAAGG
* *
3943820 TAATAAAAAATACAATGCATTTTCTTAATC-AAGTAAATCTTCA
1 TAATAAAAAATACAATACATTTACTTAATCAAAG-AAATCTTCA
* *
3943863 TAATAAAATATATAATACATTTACTTAATCAAAGAAATCTT
1 TAATAAAAAATACAATACATTTACTTAATCAAAGAAATCTT
3943904 GTAATGAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 33 0.92
44 3 0.08
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.36
Consensus pattern (43 bp):
TAATAAAAAATACAATACATTTACTTAATCAAAGAAATCTTCA
Found at i:3949173 original size:17 final size:18
Alignment explanation
Indices: 3949153--3949198 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
3949143 TATGTACAAT
*
3949153 ATATATAAAATAA-AAGA
1 ATATATAAAATAATAAAA
*
3949170 ATATGTAAAATAATAAAA
1 ATATATAAAATAATAAAA
*
3949188 ATATTTAAAAT
1 ATATATAAAAT
3949199 GATTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
ATATATAAAATAATAAAA
Found at i:3954772 original size:48 final size:48
Alignment explanation
Indices: 3954716--3954824 Score: 191
Period size: 48 Copynumber: 2.3 Consensus size: 48
3954706 TGAGACAAAG
*
3954716 TTGAAAATTCATCCACAATGGTGGAATATTTACGTACTACCAACTAAA
1 TTGAAAATTCATCCACAATGGTAGAATATTTACGTACTACCAACTAAA
* *
3954764 TTGAAAATTCATCCATAATGGTAGAATATTTACGTACTAGCAACTAAA
1 TTGAAAATTCATCCACAATGGTAGAATATTTACGTACTACCAACTAAA
3954812 TTGAAAATTCATC
1 TTGAAAATTCATC
3954825 AAAAATTAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (48 bp):
TTGAAAATTCATCCACAATGGTAGAATATTTACGTACTACCAACTAAA
Found at i:3955530 original size:12 final size:12
Alignment explanation
Indices: 3955509--3955554 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
3955499 CTAACCTTCC
*
3955509 ATAATCATAATG
1 ATAATAATAATG
3955521 ATAATAATAATG
1 ATAATAATAATG
*
3955533 ATAATTATAA-G
1 ATAATAATAATG
3955544 AATAA-AATAAT
1 -ATAATAATAAT
3955555 ATATTATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 5 0.17
12 24 0.83
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (12 bp):
ATAATAATAATG
Found at i:3955536 original size:18 final size:18
Alignment explanation
Indices: 3955509--3955548 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
3955499 CTAACCTTCC
*
3955509 ATAATCATAATGATAATA
1 ATAATCATAATGATAAGA
* *
3955527 ATAATGATAATTATAAGA
1 ATAATCATAATGATAAGA
3955545 ATAA
1 ATAA
3955549 AATAATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (18 bp):
ATAATCATAATGATAAGA
Found at i:3966467 original size:35 final size:35
Alignment explanation
Indices: 3966421--3966499 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
3966411 GAGAGAAGAT
*
3966421 GAAATAAAAATCAATTAATTTCTCTATATAGATCC
1 GAAATAGAAATCAATTAATTTCTCTATATAGATCC
* *
3966456 GAAATAGAAATCAATTAATTTTTCTGTATAGATCC
1 GAAATAGAAATCAATTAATTTCTCTATATAGATCC
3966491 GAAATAGAA
1 GAAATAGAA
3966500 TACACTTGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (35 bp):
GAAATAGAAATCAATTAATTTCTCTATATAGATCC
Found at i:3969462 original size:60 final size:60
Alignment explanation
Indices: 3969278--3969462 Score: 202
Period size: 60 Copynumber: 3.1 Consensus size: 60
3969268 ATATAATTTA
*
3969278 ATAAAATTCTTAATAAAATTATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
1 ATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
* * * * * *
3969338 ATAAAATATAATTTAAAATAATTATTATTAAATAT-AATTTAATAAAA--AT-ATATA-ATTTA-
1 ATAAAAT-T--CTTAATATAATTATTCTT--ATATGAATTTACTAAAATCATAATATATAATAAT
* *
3969397 ATAAAATTCTTAATATAATTATCCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
3969457 ATAAAA
1 ATAAAA
3969463 ATAATATATA
Statistics
Matches: 99, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
54 4 0.04
55 11 0.11
56 14 0.14
57 2 0.02
58 6 0.06
59 9 0.09
60 16 0.16
61 6 0.06
62 2 0.02
63 14 0.14
64 11 0.11
65 4 0.04
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.41
Consensus pattern (60 bp):
ATAAAATTCTTAATATAATTATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
Found at i:3975596 original size:21 final size:21
Alignment explanation
Indices: 3975550--3975599 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
3975540 AGCGGTGGCG
* *
3975550 GTGAAATTGGGTACTGTAGCG
1 GTGAGATTGGGTACTGTAGCA
3975571 GTGAGATTGGGTACTGTAGCA
1 GTGAGATTGGGTACTGTAGCA
3975592 GTGAGATT
1 GTGAGATT
3975600 AGAAACAGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.08, G:0.38, T:0.30
Consensus pattern (21 bp):
GTGAGATTGGGTACTGTAGCA
Found at i:3978608 original size:6 final size:6
Alignment explanation
Indices: 3978597--3978634 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
3978587 TTTGCAACCC
*
3978597 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
3978635 GAAGCAGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:3978620 original size:18 final size:18
Alignment explanation
Indices: 3978597--3978632 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
3978587 TTTGCAACCC
3978597 AAGGGGAAGGGGAAAGGG
1 AAGGGGAAGGGGAAAGGG
3978615 AAGGGGAAGGGGAAAGGG
1 AAGGGGAAGGGGAAAGGG
3978633 GAGAAGCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (18 bp):
AAGGGGAAGGGGAAAGGG
Found at i:3980072 original size:14 final size:13
Alignment explanation
Indices: 3980025--3980073 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
3980015 ATATATACGC
3980025 ATATAT-ATAAACA
1 ATATATAATAAA-A
3980038 ATTATATAATAAAA
1 A-TATATAATAAAA
3980052 ATAATATAATAAAA
1 AT-ATATAATAAAA
3980066 CATATATA
1 -ATATATA
3980074 TCTAAGACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.06
14 23 0.72
15 7 0.22
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (13 bp):
ATATATAATAAAA
Found at i:3980122 original size:3 final size:3
Alignment explanation
Indices: 3980111--3980171 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
3980101 TAAAAAAAAC
* * * *
3980111 ATA ACA ATA AT- ATCA ATA ATA TTA ATA A-A TATA CTA ATA ACA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
3980156 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
3980172 AATTGCTAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
2 3 0.07
3 40 0.87
4 3 0.07
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3988410 original size:24 final size:25
Alignment explanation
Indices: 3988382--3988437 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
3988372 ATCATTTAAA
3988382 AATTAAATATATATAAATA-TTTT-T
1 AATTAAATAT-TATAAATATTTTTGT
* *
3988406 AATT-AATATTTTATATATTTTTGT
1 AATTAAATATTATAAATATTTTTGT
3988430 AATTAAAT
1 AATTAAAT
3988438 TTAAATTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 6 0.22
23 9 0.33
24 9 0.33
25 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
AATTAAATATTATAAATATTTTTGT
Found at i:3988445 original size:20 final size:21
Alignment explanation
Indices: 3988395--3988445 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 21
3988385 TAAATATATA
3988395 TAAATATTTTTAATTAATATTT
1 TAAAT-TTTTTAATTAATATTT
3988417 TATATATTTTTGTAATTAA-A-TT
1 TA-A-ATTTTT-TAATTAATATTT
3988439 TAAATTT
1 TAAATTT
3988446 AGAAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.15
21 1 0.04
22 6 0.23
23 6 0.23
24 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAAATTTTTTAATTAATATTT
Found at i:3991081 original size:15 final size:15
Alignment explanation
Indices: 3991057--3991090 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
3991047 AACAATTATG
* *
3991057 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
3991072 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
3991087 ATAA
1 ATAA
3991091 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:3992641 original size:5 final size:6
Alignment explanation
Indices: 3992582--3992646 Score: 58
Period size: 6 Copynumber: 10.5 Consensus size: 6
3992572 CATGGAGAAA
* * ** * *
3992582 AAAAAGT AAAAAGT AAAAAT AAAAAT AAGAAT AAATAT GTACAT AAAAAC
1 AAAAA-T AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
3992632 AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAA
3992647 CAGAGAAGTT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
6 35 0.74
7 12 0.26
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:3993632 original size:129 final size:129
Alignment explanation
Indices: 3993360--3993635 Score: 412
Period size: 129 Copynumber: 2.1 Consensus size: 129
3993350 AACTTCAGGG
* *
3993360 AGATAGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATTGGATGCGATCTG
1 AGATAGGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATTGGATGCGATCTG
* * *
3993425 CTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTCGATCCGCTTCACTGCCAGTACAGGA
66 CTCCACTACAACTTCAGAGAGATAAGATCTGTGATTTTAGATCCGCTTCACTGCCAGTACAAGA
* *
3993489 AGATAAGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTT-GATGTGATCT
1 AGATAGGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGGATGCGATCT
** * * *
3993553 GCTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTTTAGATCCGCTTCATTGCCAGTACAAGA
65 GCTCCACTACAACTTCAGAGAGATAAGATCTGTGATTTTAGATCCGCTTCACTGCCAGTACAAGA
*
3993617 AGATAGGATTGGTTTTTTT
1 AGATAGGATTGTTTTTTTT
3993636 GTTTTTTGTT
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
128 61 0.46
129 69 0.52
130 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (129 bp):
AGATAGGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATTGGATGCGATCTG
CTCCACTACAACTTCAGAGAGATAAGATCTGTGATTTTAGATCCGCTTCACTGCCAGTACAAGA
Found at i:3994571 original size:128 final size:129
Alignment explanation
Indices: 3994293--3994573 Score: 438
Period size: 129 Copynumber: 2.2 Consensus size: 129
3994283 ACTGCAACTT
* *
3994293 CAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCG
1 CAGGAAGATAGGATTGATTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCG
* * *
3994358 ATCTGCTCTATTACAACTTCAGAGAGATAAGATCTGTGATTTTCGATCTGCTTCACTACCAGTA
66 ATCTGCTCCACTACAACTTAAGAGAGATAAGATCTGTGATTTTCGATCTGCTTCACTACCAGTA
* * *
3994422 CAGGAAGATAGGATTGTTTTTTTTCGTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCG
1 CAGGAAGATAGGATTGATTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCG
** * *
3994487 ATCTGCTCCACTACTGCTTAAG-GAGATAAGATCTGTGGTTTTCGATCTGCTTCACTGCCAGTA
66 ATCTGCTCCACTACAACTTAAGAGAGATAAGATCTGTGATTTTCGATCTGCTTCACTACCAGTA
*
3994550 CAGGAAGATAGGATTGGTTTTTTT
1 CAGGAAGATAGGATTGATTTTTTT
3994574 GTTTTCTGTT
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
128 62 0.45
129 77 0.55
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (129 bp):
CAGGAAGATAGGATTGATTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCG
ATCTGCTCCACTACAACTTAAGAGAGATAAGATCTGTGATTTTCGATCTGCTTCACTACCAGTA
Found at i:3994641 original size:938 final size:942
Alignment explanation
Indices: 3992669--3994995 Score: 3857
Period size: 938 Copynumber: 2.4 Consensus size: 942
3992659 AAATCGACCC
*
3992669 TTTTTGTTTTCTGTTTTTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAGGAGAACTACA
1 TTTTTGTTTTCTG---TTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAAGAGAACTACA
* * * *
3992734 AAACACCAGATTTTTGGCTTTAT-AGCTAAAATACAAAACTACTTTTTCTATTTTGTCGTTTGCC
63 AAACACCAGCTTTTTGGCTTTATAATC-GAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCC
* * *
3992798 ATTTGTTTCTTGCTGGTGTCTTCTTGTTCTTTATTTTCCTTGCAGGTAACAATGCGCATGGAGGA
127 A---------T--T--TG-----TTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGA
*
3992863 GGCTACGGTGACAGTAGCGTGTGGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGA
174 GGCTATGGTGACAGTAGCGTGTGGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGA
3992928 CAGAGGCTGCAGAGAGGGGTGCCGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTA
239 CAGAGGCTGCAGAGAGGGGTGCCGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTA
* *
3992993 CTAAAATTGAGTTTAAGTTGTGGGCCACTTGGGCCACTAGATTTTTTTATTTTTGGGCTTGT-A-
304 CTAAAACTGAGTTTAAGTTGT-GG---C-TGGGCCACTAGGTTTTTTTATTTTTGGGCTTGTAAT
3993056 --A-TTTTT-TTTGTTTTGTTTTTTCTGGTGGGCCGGGCAAAAATGGGTCTGTACAACTGCCCCT
364 TTATTTTTTATTTGTTTTGTTTTTTCTGGTGGGCCGGGCAAAAATGGGTCTGTACAACTGCCCCT
* * * *
3993117 CATTGCTTATTATCGTGTAACGAGAATAGAGCAAATACTAAGAAAGACCAATTTTGCCCGGTCTC
429 CATTACTTATTATCGTATAACGAGAATAAAGCAAAGACTAAGAAAGACCAATTTTGCCCGGTCTC
3993182 GTCGAGTCTTGACTTCTTGGTGCCTCTCTTCTTCAAGTAGCTTTATTCAAGTCCACCGTGCCTTG
494 GTCGAGTCTTGACTTCTTGGTGCCTCTCTTCTTCAAGTAGCTTTATTCAAGTCCACCGTGCCTTG
* *
3993247 TTGCCTTGATCCACTTCATGGCACTTTCAGAGAGATATGACTTCCATCTACTCTGCTGCAACTTT
559 TTGCCTAGATCCACTTCATGGCACTTTCAGAGAGATATGACTTCCATCTACTCTGCTGCAACTCT
* *
3993312 ATGAGAATGAGATTTGTAGTTTTAATCCGTTCCACTGTAACTTCAGGGAGATAGGATTGATTTCT
624 ATGAGAATGAGATTTGTAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCT
*
3993377 TTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATTGGATGCGATCTGCTCTACTACAACTTCAG
689 TTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAG
*
3993442 AGAGATAAGATCTGTGATTTTCGATCCGCTTCACTGCCAGTACAGGAAGATAAGATTGTTTTTTT
754 AGAGATAAGATCTGTGATTTTCGATCCGCTTCACTACCAGTACAGGAAGATAAGATTGTTTTTTT
* *
3993507 TCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAGGG
819 TCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAAGG
*
3993572 AGATAAGATCTGTGGTTTTAGATCCGCTTCATTGCCAGTACAAGAAGATAGGATTGGTT
884 AGATAAGATCTGTGGTTTTAGATCCGCTTCACTGCCAGTACAAGAAGATAGGATTGGTT
*
3993631 TTTTTGTTTTTTGTTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAAGAGAACTACAAAA
1 TTTTTGTTTTCTGTTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAAGAGAACTACAAAA
3993696 CACCAGCTTTTTGGCTTTATAATCGAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCCATTT
66 CACCAGCTTTTTGGCTTTATAATCGAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCCATTT
3993761 GTTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGAGGCTATGGTGACAGTAGCGTGT
131 GTTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGAGGCTATGGTGACAGTAGCGTGT
3993826 GGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGACAGAGGCTGCAGAGAGGGGTGC
196 GGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGACAGAGGCTGCAGAGAGGGGTGC
3993891 CGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTACTAAAACTGAGTTTAAG-T-T-
261 CGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTACTAAAACTGAGTTTAAGTTGTG
*
3993953 G-TGGGCCACTAGGTTTTTTTATTTTGGGGCTTGTAATTTATTTTTTATTTGTTTTGTTTTTTCT
326 GCTGGGCCACTAGGTTTTTTTATTTTTGGGCTTGTAATTTATTTTTTATTTGTTTTGTTTTTTCT
* *
3994017 GGTGGGCCGGGCAAAAATGGGTCTGTACAGCTGCCCCTCCTTACTTATTATCGTATAACGAGAAT
391 GGTGGGCCGGGCAAAAATGGGTCTGTACAACTGCCCCTCATTACTTATTATCGTATAACGAGAAT
3994082 AAAGCAAAGACTAAGAAAGACCAATTTTGCCCGGTCTCGTCGAGTCTTGACTTCTTGGTGCCTCT
456 AAAGCAAAGACTAAGAAAGACCAATTTTGCCCGGTCTCGTCGAGTCTTGACTTCTTGGTGCCTCT
3994147 CTTCTTCAAGTAGCTTTATTCAAGTCCACCGTGCCTTGTTGCCTAGATCCACTTCATGGCACTTT
521 CTTCTTCAAGTAGCTTTATTCAAGTCCACCGTGCCTTGTTGCCTAGATCCACTTCATGGCACTTT
* *
3994212 CAGAGAGATATGACTTCCATCTACTCTGCTGCAACTCTATGGGAATGAGATTTGTGGTTTTAATC
586 CAGAGAGATATGACTTCCATCTACTCTGCTGCAACTCTATGAGAATGAGATTTGTAGTTTTAATC
3994277 CGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGA
651 CGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGA
* *
3994342 GATAAGACTGGATGCGATCTGCTCTATTACAACTTCAGAGAGATAAGATCTGTGATTTTCGATCT
716 GATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTCGATCC
* *
3994407 GCTTCACTACCAGTACAGGAAGATAGGATTGTTTTTTTTCGTCTGCTCCACTATTGCTTAGGGAG
781 GCTTCACTACCAGTACAGGAAGATAAGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAG
* *
3994472 ATAAGACTTGATGCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTGGTTTTCGATCTGC
846 ATAAGACTTGATGCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTGGTTTTAGATCCGC
*
3994537 TTCACTGCCAGTACAGGAAGATAGGATTGGTT
911 TTCACTGCCAGTACAAGAAGATAGGATTGGTT
*
3994569 TTTTTGTTTTCTGTTTTTTTATTTCAATATCTGTGTTCCTAACAATCGGAAAGAGAACTACAAAA
1 TTTTTGTTTTCTGTTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAAGAGAACTACAAAA
*
3994634 CACCAGCTTTTTGGCTTTATAGTCGAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCCATTT
66 CACCAGCTTTTTGGCTTTATAATCGAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCCATTT
3994699 GTTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGAGGCTATGGTGACAGTAGCGTGT
131 GTTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGAGGCTATGGTGACAGTAGCGTGT
* * * *
3994764 GGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCAGTGACAGAGGCTGCACAGAGAGGTGC
196 GGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGACAGAGGCTGCAGAGAGGGGTGC
3994829 CGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTACTAAAACTGAGTTTAAGTTGTG
261 CGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTACTAAAACTGAGTTTAAGTTGT-
3994894 GGCCACTTGGGCCACTAGGTTTTTTTTTAATTTTTGGGCTTGTAATTTATTTTTTATTTGTTTTG
325 GG---C-TGGGCCACTAGG--TTTTTTT-ATTTTTGGGCTTGTAATTTATTTTTTATTTGTTTTG
* *
3994959 TTTTTTCTGGTGGGCCGGGTAAAAATTGGTCTGTACA
383 TTTTTTCTGGTGGGCCGGGCAAAAATGGGTCTGTACA
3994996 TATACCATTA
Statistics
Matches: 1299, Mismatches: 47, Indels: 50
0.93 0.03 0.04
Matches are distributed among these distances:
932 31 0.02
933 1 0.00
936 1 0.00
937 6 0.00
938 858 0.66
939 2 0.00
940 2 0.00
941 184 0.14
942 1 0.00
946 2 0.00
947 12 0.01
948 1 0.00
949 7 0.01
950 71 0.05
959 106 0.08
960 2 0.00
962 12 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (942 bp):
TTTTTGTTTTCTGTTTTTTTATTTCAATATCTGTGTTCCTAAAAATCGGAAAGAGAACTACAAAA
CACCAGCTTTTTGGCTTTATAATCGAAATACAAAACTACTTTTTCTATTTTGTTGTTTGCCATTT
GTTGTTCTTTATTTTCTTTGCAGGTAACAGTGCGCGTGGAGGAGGCTATGGTGACAGTAGCGTGT
GGCTAGGTGTGGCAGACGAGGAGGCAAAGTGCGGCTGCGGCGACAGAGGCTGCAGAGAGGGGTGC
CGACATGGCATGCGGCTAGGGTTAGATTAGGGTTTCAGTTTTACTAAAACTGAGTTTAAGTTGTG
GCTGGGCCACTAGGTTTTTTTATTTTTGGGCTTGTAATTTATTTTTTATTTGTTTTGTTTTTTCT
GGTGGGCCGGGCAAAAATGGGTCTGTACAACTGCCCCTCATTACTTATTATCGTATAACGAGAAT
AAAGCAAAGACTAAGAAAGACCAATTTTGCCCGGTCTCGTCGAGTCTTGACTTCTTGGTGCCTCT
CTTCTTCAAGTAGCTTTATTCAAGTCCACCGTGCCTTGTTGCCTAGATCCACTTCATGGCACTTT
CAGAGAGATATGACTTCCATCTACTCTGCTGCAACTCTATGAGAATGAGATTTGTAGTTTTAATC
CGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGA
GATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTCGATCC
GCTTCACTACCAGTACAGGAAGATAAGATTGTTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAG
ATAAGACTTGATGCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTGGTTTTAGATCCGC
TTCACTGCCAGTACAAGAAGATAGGATTGGTT
Found at i:3999390 original size:116 final size:115
Alignment explanation
Indices: 3999270--3999627 Score: 512
Period size: 116 Copynumber: 3.1 Consensus size: 115
3999260 AAAAACCAAA
3999270 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGGAAAAA
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAA-GAAAAA
*
3999335 AAAAATTATTTTTTCGTATCAGAATCAGATAAAAAAATACGAAAAAAATTT
65 AAAAATTATTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATTT
* *
3999386 AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAGAAAGAAAAAA
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
* *
3999451 AATTATT-TTTTTTCGTGTTAGAATCAGATAAAAAAATAC-AAAAAAATTTTT
66 AA-AATTATTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAA--TTT
* * * *
3999502 AAAAAAAA--ATTTGAGTGCTGGCCTGTCAATGGGCGGCACCCAGTACGCAGTACAAAG-AAAAA
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
* * *
3999564 AAAATTATTTTTTTTCGTGTCTGAATCAAATAAAAAAATACGAAAAAAA-TA
66 AAAATTA--TTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATTT
3999615 AAAAAAAATTTTT
1 AAAAAAAATTTTT
3999628 GTACTGTGTA
Statistics
Matches: 217, Mismatches: 16, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
112 3 0.01
113 16 0.07
114 51 0.24
115 70 0.32
116 77 0.35
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.26
Consensus pattern (115 bp):
AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
AAAATTATTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATTT
Found at i:3999485 original size:115 final size:115
Alignment explanation
Indices: 3999269--3999628 Score: 536
Period size: 115 Copynumber: 3.1 Consensus size: 115
3999259 AAAAAACCAA
3999269 AAAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGGAAAA
1 AAAAAAAAA-TTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAA-GAAAA
* * *
3999334 AAAA-AATTATTTTTTCGTATCAGAATCAGATAAAAAAATACGAAAAAAATTT
64 AAAATTATT-TTTTTTCGTGTTAGAATCAGATAAAAAAATACGAAAAAAATTT
*
3999386 AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAGAAAGAAAAAA
1 AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
3999451 AATTATTTTTTTTCGTGTTAGAATCAGATAAAAAAATAC-AAAAAAATTTTT
66 AATTATTTTTTTTCGTGTTAGAATCAGATAAAAAAATACGAAAAAAA--TTT
* * *
3999502 AAAAAAAAA--TTTGAGTGCTGGCCTGTCAATGGGCGGCACCCAGTACGCAGTACAAAGAAAAAA
1 AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAG-AAAAA
*
3999565 AAATTATTTTTTTTCGTGTCT-GAATCAAATAAAAAAATACGAAAAAAA--T
65 AAATTATTTTTTTTCGTGT-TAGAATCAGATAAAAAAATACGAAAAAAATTT
3999614 AAAAAAAAATTTTTG
1 AAAAAAAAATTTTTG
3999629 TACTGTGTAC
Statistics
Matches: 226, Mismatches: 9, Indels: 19
0.89 0.04 0.07
Matches are distributed among these distances:
112 10 0.04
114 55 0.24
115 81 0.36
116 71 0.31
117 9 0.04
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.26
Consensus pattern (115 bp):
AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
AATTATTTTTTTTCGTGTTAGAATCAGATAAAAAAATACGAAAAAAATTT
Found at i:4001490 original size:3 final size:3
Alignment explanation
Indices: 4001482--4001517 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
4001472 ATTTTATCTT
4001482 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4001518 TTTTATTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4001951 original size:16 final size:17
Alignment explanation
Indices: 4001913--4001953 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
4001903 TGTGTAAATA
4001913 ATTTTTA-TGTGTTTAT
1 ATTTTTATTGTGTTTAT
*
4001929 ATATTTATTGT-TTTAT
1 ATTTTTATTGTGTTTAT
*
4001945 TTTTTTATT
1 ATTTTTATT
4001954 TCAAAAGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTTTTATTGTGTTTAT
Found at i:4007105 original size:54 final size:54
Alignment explanation
Indices: 4007046--4007149 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
4007036 GACACAACAG
*
4007046 CATAGATGACGAAGATGTGAACAATCCCATTAAGCTCGGTAATGGAACGAGCAA
1 CATAGATGACGAAGATGTGAACAATCCCATTAAGCTCAGTAATGGAACGAGCAA
*
4007100 CATAGATGACGAAGATGTGAACGATCCCATTAAGCTCAGTAATGGAACGA
1 CATAGATGACGAAGATGTGAACAATCCCATTAAGCTCAGTAATGGAACGA
4007150 ATGAACCACC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.19
Consensus pattern (54 bp):
CATAGATGACGAAGATGTGAACAATCCCATTAAGCTCAGTAATGGAACGAGCAA
Found at i:4019384 original size:54 final size:54
Alignment explanation
Indices: 4019320--4019432 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 54
4019310 ATTGTCGTCC
4019320 TTCTATCTGCATCAACTTGTGTTGTTCATACATACCCTCCTAAGTTACCGAACT
1 TTCTATCTGCATCAACTTGTGTTGTTCATACATACCCTCCTAAGTTACCGAACT
4019374 TTCTATCTGCATCAACTTGTGTTGTTCATACATACCCTCCTAAGTTACCGAACT
1 TTCTATCTGCATCAACTTGTGTTGTTCATACATACCCTCCTAAGTTACCGAACT
*
4019428 ATCTA
1 TTCTA
4019433 AACAAGACAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (54 bp):
TTCTATCTGCATCAACTTGTGTTGTTCATACATACCCTCCTAAGTTACCGAACT
Found at i:4020084 original size:6 final size:6
Alignment explanation
Indices: 4020075--4020134 Score: 111
Period size: 6 Copynumber: 10.0 Consensus size: 6
4020065 ACCCGCATCC
4020075 GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA
1 GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA
*
4020123 GCAACA GCACCA
1 GCACCA GCACCA
4020135 TGGGCCAACT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.35, C:0.48, G:0.17, T:0.00
Consensus pattern (6 bp):
GCACCA
Found at i:4021951 original size:18 final size:19
Alignment explanation
Indices: 4021923--4021960 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
4021913 AAGATTGGAT
*
4021923 TGTTAAAAAAAATTTAAAA
1 TGTTAAAAAAAATTGAAAA
4021942 TGTT-AAAAAAATTGAAAA
1 TGTTAAAAAAAATTGAAAA
4021960 T
1 T
4021961 TTTGATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (19 bp):
TGTTAAAAAAAATTGAAAA
Found at i:4027284 original size:11 final size:11
Alignment explanation
Indices: 4027270--4027298 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
4027260 AAAAAATAAA
4027270 AAAAATATTTT
1 AAAAATATTTT
4027281 AAAAATATTTT
1 AAAAATATTTT
4027292 AAAAATA
1 AAAAATA
4027299 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:4027318 original size:31 final size:31
Alignment explanation
Indices: 4027261--4027321 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
4027251 TTTGAAAATA
***
4027261 AAAAATAAAAAAAATATTTTAAAAATATTTT
1 AAAAATAAAAAAAATATAAAAAAAATATTTT
4027292 AAAAATAAAAAAAAT-TAAAAATAAATATTT
1 AAAAATAAAAAAAATATAAAAA-AAATATTT
4027322 ATTATATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 3 0.12
31 23 0.88
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (31 bp):
AAAAATAAAAAAAATATAAAAAAAATATTTT
Found at i:4028686 original size:23 final size:22
Alignment explanation
Indices: 4028660--4028716 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
4028650 AGTAAAAATG
4028660 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
4028683 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
4028702 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
4028717 CAATAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:4030608 original size:15 final size:15
Alignment explanation
Indices: 4030588--4030616 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4030578 GTAATTGGGT
4030588 TTTGGGTTTAGGTGA
1 TTTGGGTTTAGGTGA
4030603 TTTGGGTTTAGGTG
1 TTTGGGTTTAGGTG
4030617 GTATGGGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.41, T:0.48
Consensus pattern (15 bp):
TTTGGGTTTAGGTGA
Found at i:4030623 original size:15 final size:15
Alignment explanation
Indices: 4030590--4030623 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4030580 AATTGGGTTT
*
4030590 TGGGTTTAGGTGATT
1 TGGGTTTAGGTGATA
*
4030605 TGGGTTTAGGTGGTA
1 TGGGTTTAGGTGATA
4030620 TGGG
1 TGGG
4030624 CCCGGGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.47, T:0.41
Consensus pattern (15 bp):
TGGGTTTAGGTGATA
Found at i:4036075 original size:16 final size:16
Alignment explanation
Indices: 4036044--4036076 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4036034 TAAATAATTA
4036044 AATATGTATGTTTAAT
1 AATATGTATGTTTAAT
4036060 AATAT-TATGTTATAAT
1 AATATGTATGTT-TAAT
4036076 A
1 A
4036077 TTTATTACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (16 bp):
AATATGTATGTTTAAT
Found at i:4037327 original size:30 final size:30
Alignment explanation
Indices: 4037286--4037433 Score: 151
Period size: 30 Copynumber: 5.0 Consensus size: 30
4037276 CTTTTTTGCT
* *
4037286 TTTTGACCCCTAAACTTTTCTAAAATTTCA
1 TTTTAACCCCTAAACTTTTCTAAAATTACA
4037316 TTTTAACCCCTAAAC-TTTCTCAAAATTACA
1 TTTTAACCCCTAAACTTTTCT-AAAATTACA
* *
4037346 GTTCAACCCCTAAACTTTTCT-AAATTACA
1 TTTTAACCCCTAAACTTTTCTAAAATTACA
* *
4037375 TTTTGACCCCTAAA-ATTTCTTAAAATTACA
1 TTTTAACCCCTAAACTTTTC-TAAAATTACA
** * *
4037405 TTTGGACCCTTACAC-TTTCTCAAAATTAC
1 TTTTAACCCCTAAACTTTTCT-AAAATTAC
4037434 GTTTCGGCCC
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
28 4 0.04
29 26 0.26
30 66 0.65
31 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (30 bp):
TTTTAACCCCTAAACTTTTCTAAAATTACA
Found at i:4037387 original size:59 final size:60
Alignment explanation
Indices: 4037291--4037404 Score: 185
Period size: 59 Copynumber: 1.9 Consensus size: 60
4037281 TTGCTTTTTG
* *
4037291 ACCCCTAAACTTTTCTAAAATTTCATTTTAACCCCTAAACTTTCTCAAAATTACAGTTCA
1 ACCCCTAAACTTTTCTAAAATTACATTTTAACCCCTAAAATTTCTCAAAATTACAGTTCA
* *
4037351 ACCCCTAAACTTTTCT-AAATTACATTTTGACCCCTAAAATTTCTTAAAATTACA
1 ACCCCTAAACTTTTCTAAAATTACATTTTAACCCCTAAAATTTCTCAAAATTACA
4037405 TTTGGACCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 34 0.68
60 16 0.32
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (60 bp):
ACCCCTAAACTTTTCTAAAATTACATTTTAACCCCTAAAATTTCTCAAAATTACAGTTCA
Found at i:4037422 original size:59 final size:59
Alignment explanation
Indices: 4037290--4037451 Score: 182
Period size: 59 Copynumber: 2.7 Consensus size: 59
4037280 TTTGCTTTTT
* * *
4037290 GACCCCTAAACTTTTCTAAAATTTCATTTTAACCCCTAAACTTTCTCAAAATTACAGTTC
1 GACCCCTAAACTTTTCT-AAATTACATTTTGACCCCTAAAATTTCTCAAAATTACAGTTC
* * * *
4037350 AACCCCTAAACTTTTCTAAATTACATTTTGACCCCTAAAATTTCTTAAAATTACATTTG
1 GACCCCTAAACTTTTCTAAATTACATTTTGACCCCTAAAATTTCTCAAAATTACAGTTC
* * * * * *
4037409 GACCCTTACACTTTCTCAAAATTACGTTTCGGCCCC-AAAATTT
1 GACCCCTAAACTTT-TCTAAATTACATTTTGACCCCTAAAATTT
4037452 TTGCTACATT
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
59 54 0.62
60 33 0.38
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (59 bp):
GACCCCTAAACTTTTCTAAATTACATTTTGACCCCTAAAATTTCTCAAAATTACAGTTC
Found at i:4037809 original size:3 final size:3
Alignment explanation
Indices: 4037801--4037862 Score: 58
Period size: 3 Copynumber: 20.3 Consensus size: 3
4037791 GACCGAACGG
*
4037801 AGA AGA AGA AGA AGA AGA A-A A-A AAA AGAA AGA AG- AGAA AGAA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AG-A AG-A AGA
4037846 AGGA AGA AGA AGA AGA A
1 A-GA AGA AGA AGA AGA A
4037863 AGAAACAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
2 6 0.11
3 35 0.66
4 12 0.23
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:4037831 original size:4 final size:4
Alignment explanation
Indices: 4037815--4037882 Score: 51
Period size: 4 Copynumber: 18.5 Consensus size: 4
4037805 GAAGAAGAAG
*
4037815 AAGA AA-A AA-A AAGA AAGA AGAGA AAGA AAG- AAGG AAG- AAG- AAG-
1 AAGA AAGA AAGA AAGA AAGA A-AGA AAGA AAGA AAGA AAGA AAGA AAGA
* *
4037858 AAGA AAGA AACA AA-A AAAA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AA
4037883 ATATTTTGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
3 21 0.37
4 32 0.56
5 4 0.07
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:4037834 original size:17 final size:17
Alignment explanation
Indices: 4037812--4037881 Score: 65
Period size: 17 Copynumber: 4.3 Consensus size: 17
4037802 GAAGAAGAAG
4037812 AAGAAGAAAAAAAAAGA
1 AAGAAGAAAAAAAAAGA
* *
4037829 AAGAAGAGAAAGAAAGA
1 AAGAAGAAAAAAAAAGA
* * *
4037846 AGGAAG-AAGAAGAAGA
1 AAGAAGAAAAAAAAAGA
*
4037862 AAGAA-ACAAAAAAA-A
1 AAGAAGAAAAAAAAAGA
4037877 AAGAA
1 AAGAA
4037882 AATATTTTGT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
15 6 0.15
16 15 0.37
17 20 0.49
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (17 bp):
AAGAAGAAAAAAAAAGA
Found at i:4037834 original size:20 final size:21
Alignment explanation
Indices: 4037809--4037883 Score: 72
Period size: 20 Copynumber: 3.8 Consensus size: 21
4037799 GGAGAAGAAG
4037809 AAGAAGAAGAAA-AAAAAAGA
1 AAGAAGAAGAAAGAAAAAAGA
* *
4037829 AAGAAG-AGAAAGAAAGAAGG
1 AAGAAGAAGAAAGAAAAAAGA
*
4037849 AAGAAGAAG-AAGAAAGAAACA
1 AAGAAGAAGAAAGAAA-AAAGA
4037870 AA-AA-AA-AAAGAAAA
1 AAGAAGAAGAAAGAAAA
4037884 TATTTTGTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
18 1 0.02
19 13 0.28
20 26 0.57
21 6 0.13
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (21 bp):
AAGAAGAAGAAAGAAAAAAGA
Found at i:4037840 original size:13 final size:13
Alignment explanation
Indices: 4037824--4037867 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
4037814 GAAGAAAAAA
4037824 AAAGAAAGAAGAG
1 AAAGAAAGAAGAG
4037837 AAAGAAAGAAG-G
1 AAAGAAAGAAGAG
4037849 -AAG-AAGAAGAAG
1 AAAGAAAGAAG-AG
4037861 AAAGAAA
1 AAAGAAA
4037868 CAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 6 0.22
11 3 0.11
12 2 0.07
13 14 0.52
14 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAGAG
Found at i:4037882 original size:43 final size:42
Alignment explanation
Indices: 4037801--4037882 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 42
4037791 GACCGAACGG
*
4037801 AGAAGAAGAAGAAGAAGAAAAAAAAAGAAAGAAGAGAAAGAA
1 AGAAGAAGAAGAAGAAGAAAAAAAAAGAAAGAAAAGAAAGAA
4037843 AGAAGGAAGAAGAAGAAGAAAGAAACAAA-AAA-AAAAGAAA
1 AGAA-GAAGAAGAAGAAGAAA-AAA-AAAGAAAGAAAAGAAA
4037883 ATATTTTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
42 4 0.11
43 23 0.64
44 6 0.17
45 3 0.08
ACGTcount: A:0.74, C:0.01, G:0.24, T:0.00
Consensus pattern (42 bp):
AGAAGAAGAAGAAGAAGAAAAAAAAAGAAAGAAAAGAAAGAA
Found at i:4038073 original size:19 final size:18
Alignment explanation
Indices: 4038049--4038094 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
4038039 AGGCCATTTT
* *
4038049 CAGCAGGCCCAGTGCAGCC
1 CAGCAGGCCCAGCG-AACC
*
4038068 CAGCAGACCCAGCGAACC
1 CAGCAGGCCCAGCGAACC
4038086 CAGCAGGCC
1 CAGCAGGCC
4038095 AGGCCCACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.26, C:0.43, G:0.28, T:0.02
Consensus pattern (18 bp):
CAGCAGGCCCAGCGAACC
Found at i:4038153 original size:7 final size:7
Alignment explanation
Indices: 4038141--4038168 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
4038131 AAAGAAAAAG
4038141 AAAAGAA
1 AAAAGAA
4038148 AAAAGAA
1 AAAAGAA
4038155 AAAAGAA
1 AAAAGAA
4038162 AAAAGAA
1 AAAAGAA
4038169 GAAGAAGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:4038534 original size:17 final size:17
Alignment explanation
Indices: 4038501--4038534 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4038491 GAAAAAATTC
*
4038501 TAAAATTCTCATTTTTT
1 TAAAATTCTCATGTTTT
*
4038518 TAAAATTCTCGTGTTTT
1 TAAAATTCTCATGTTTT
4038535 AATAGAATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (17 bp):
TAAAATTCTCATGTTTT
Found at i:4038678 original size:18 final size:18
Alignment explanation
Indices: 4038657--4038922 Score: 120
Period size: 17 Copynumber: 14.5 Consensus size: 18
4038647 AAAAATCGGG
4038657 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
* *
4038675 TTTCAAAAATTCTCATG-
1 TTTCAAAAATTTTCGTGT
*
4038692 TTTCAAAAATCTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
4038710 TTT-AAAAA-TTCCAGTG-
1 TTTCAAAAATTTTC-GTGT
4038726 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
4038744 TTTCAAAAAAAAATTTCTCGTGT
1 TTTC----AAAAATTT-TCGTGT
* ** *
4038767 TTTTAAAAATTCCCGT-A
1 TTTCAAAAATTTTCGTGT
* * *
4038784 TATC-GAAATTTTCTTGT
1 TTTCAAAAATTTTCGTGT
* * *
4038801 TTTCAAAAAAAAAATTCCATG-
1 TTTC----AAAAATTTTCGTGT
* *
4038822 TTTCATAAATTTCCGTGT
1 TTTCAAAAATTTTCGTGT
** *
4038840 TTTCAAAAAAAAATTCTTGTT
1 TTTC--AAAAATTTTCGTG-T
4038861 TTTCAAAAATTTTCGT-T
1 TTTCAAAAATTTTCGTGT
* *
4038878 TTTAAAAAATTTGACCGTG-
1 TTTCAAAAATTT--TCGTGT
* *
4038897 TTTCATAAATTTTCGT-A
1 TTTCAAAAATTTTCGTGT
4038914 TTTCAAAAA
1 TTTCAAAAA
4038923 AACCTCGTGT
Statistics
Matches: 183, Mismatches: 41, Indels: 49
0.67 0.15 0.18
Matches are distributed among these distances:
16 12 0.07
17 68 0.37
18 32 0.17
19 29 0.16
20 8 0.04
21 9 0.05
22 16 0.09
23 9 0.05
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:4038728 original size:34 final size:35
Alignment explanation
Indices: 4038656--4038752 Score: 162
Period size: 34 Copynumber: 2.8 Consensus size: 35
4038646 AAAAAATCGG
4038656 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
1 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
*
4038691 GTTTCAAAAATCTTCGTGTTTT-AAAAATTC-CAGT
1 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCA-T
4038725 GTTTCAAAAATTTTCGTGTTTTCAAAAA
1 GTTTCAAAAATTTTCGTGTTTTCAAAAA
4038753 AAAATTTCTC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
33 2 0.03
34 30 0.52
35 26 0.45
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (35 bp):
GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
Found at i:4038764 original size:23 final size:22
Alignment explanation
Indices: 4038730--4038775 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
4038720 CCAGTGTTTC
4038730 AAAAATTTTCGTGTTTTCAAAA
1 AAAAATTTTCGTGTTTTCAAAA
*
4038752 AAAAATTTCTCGTGTTTTTAAAA
1 AAAAATTT-TCGTGTTTTCAAAA
4038775 A
1 A
4038776 TTCCCGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTCAAAA
Found at i:4038816 original size:58 final size:56
Alignment explanation
Indices: 4038696--4038813 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 56
4038686 CTCATGTTTC
* * *
4038696 AAAAATCTTCGTGTTTTAAAAATTCCAGTGTTTCAAAAATTTTCGTGTTTTCAAAA
1 AAAAATTTTCGTGTTTTAAAAATTCCAGTATATCAAAAATTTTCGTGTTTTCAAAA
* * *
4038752 AAAAATTTCTCGTGTTTTTAAAAATTCCCGTATATC-GAAATTTTCTTGTTTTCAAAA
1 AAAAATTT-TCGTG-TTTTAAAAATTCCAGTATATCAAAAATTTTCGTGTTTTCAAAA
4038809 AAAAA
1 AAAAA
4038814 ATTCCATGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
56 7 0.13
57 29 0.54
58 18 0.33
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (56 bp):
AAAAATTTTCGTGTTTTAAAAATTCCAGTATATCAAAAATTTTCGTGTTTTCAAAA
Found at i:4038865 original size:39 final size:38
Alignment explanation
Indices: 4038789--4038997 Score: 116
Period size: 38 Copynumber: 5.6 Consensus size: 38
4038779 CCGTATATCG
* *
4038789 AAATTTTCTTGTTTTCAAAAAAAAAATTCCATGTTTCAT
1 AAATTTTCGTGTTTTC-AAAAAAAAATTCCATGTTTCAA
* *
4038828 AAATTTCCGTGTTTTCAAAAAAAAATT-CTTGTTTTTCAA
1 AAATTTTCGTGTTTTCAAAAAAAAATTCCATG--TTTCAA
* * *
4038867 AAATTTTCGT-TTTT---AAAAAATTTGACCGTGTTTCAT
1 AAATTTTCGTGTTTTCAAAAAAAAATT--CCATGTTTCAA
* ** *
4038903 AAATTTTCGT-ATTTC-AAAAAAACCT-CGTGTTTC-A
1 AAATTTTCGTGTTTTCAAAAAAAAATTCCATGTTTCAA
* ** * * *
4038937 AAATTTTCGGGTTTTTTTAAAAACAATT-CGTGTTTCTA
1 AAATTTTCGTG-TTTTCAAAAAAAAATTCCATGTTTCAA
* *
4038975 AAATTCTCGTATTTT-AAAAAAAA
1 AAATTTTCGTGTTTTCAAAAAAAA
4038998 TCGTGTTTTC
Statistics
Matches: 136, Mismatches: 23, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
34 9 0.07
35 16 0.12
36 27 0.20
37 22 0.16
38 34 0.25
39 28 0.21
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (38 bp):
AAATTTTCGTGTTTTCAAAAAAAAATTCCATGTTTCAA
Found at i:4038990 original size:35 final size:33
Alignment explanation
Indices: 4038820--4039011 Score: 125
Period size: 37 Copynumber: 5.3 Consensus size: 33
4038810 AAAAATTCCA
* *
4038820 TGTTTCATAAATTTCCGTGTTTTCAAAAAAAAATTCTTG
1 TGTTTCA-AAATTTTCGTATTTT--AAAAAAAA-TC--G
* * *
4038859 TTTTTCAAAAATTTTCGT-TTTTAAAAAATTTGACCG
1 TGTTTC-AAAATTTTCGTATTTTAAAAAA---AATCG
* *
4038895 TGTTTCATAAATTTTCGTATTTCAAAAAAACCTCG
1 TGTTTCA-AAATTTTCGTATTTTAAAAAAA-ATCG
* *
4038930 TGTTTCAAAATTTTCGGGTTTTTTTAAAAACAATTCG
1 TGTTTCAAAATTTTC--G-TATTTTAAAAA-AAATCG
*
4038967 TGTTTCTAAAATTCTCGTATTTTAAAAAAAATCG
1 TGTTTC-AAAATTTTCGTATTTTAAAAAAAATCG
4039001 TGTTTTCAAAA
1 TG-TTTCAAAA
4039012 AAAGAAAAAG
Statistics
Matches: 125, Mismatches: 15, Indels: 31
0.73 0.09 0.18
Matches are distributed among these distances:
34 19 0.15
35 24 0.19
36 24 0.19
37 27 0.22
38 15 0.12
39 15 0.12
40 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (33 bp):
TGTTTCAAAATTTTCGTATTTTAAAAAAAATCG
Found at i:4039001 original size:17 final size:18
Alignment explanation
Indices: 4038981--4039014 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4038971 TCTAAAATTC
4038981 TCGTATTTT-AAAAAAAA
1 TCGTATTTTCAAAAAAAA
*
4038998 TCGTGTTTTCAAAAAAA
1 TCGTATTTTCAAAAAAA
4039015 GAAAAAGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (18 bp):
TCGTATTTTCAAAAAAAA
Found at i:4042828 original size:16 final size:16
Alignment explanation
Indices: 4042804--4042852 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
4042794 TTCGCTGTAT
4042804 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
4042820 TGTAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
4042836 TGGAATAGAGACGTAA
1 TGGAATAGAGGCGTAA
4042852 T
1 T
4042853 AGCAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:4043131 original size:18 final size:17
Alignment explanation
Indices: 4043088--4043131 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
4043078 TTATTAAATA
* *
4043088 TAATTTAATAAAAATAT
1 TAATTTAATAAAATTCT
4043105 ATAATTTAATAAAATTCT
1 -TAATTTAATAAAATTCT
4043123 TAATATTAA
1 TAAT-TTAA
4043132 ATATTCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATTTAATAAAATTCT
Found at i:4043139 original size:16 final size:16
Alignment explanation
Indices: 4043114--4043149 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
4043104 TATAATTTAA
4043114 TAAA-ATTCTTAATAT
1 TAAATATTCTTAATAT
4043129 TAAATATTCTTAATAT
1 TAAATATTCTTAATAT
4043145 TAAAT
1 TAAAT
4043150 TACTAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAATATTCTTAATAT
Found at i:4043164 original size:22 final size:21
Alignment explanation
Indices: 4043139--4043190 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
4043129 TAAATATTCT
*
4043139 TAATATTAA-ATTACTAAAATCA
1 TAATATTAATACTA-TAAAAT-A
4043161 TAATATATAATACTATAAAATA
1 TAATAT-TAATACTATAAAATA
4043183 TAAT-TTAA
1 TAATATTAA
4043191 CATAATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATATTAATACTATAAAATA
Found at i:4043208 original size:26 final size:26
Alignment explanation
Indices: 4043165--4043322 Score: 107
Period size: 26 Copynumber: 6.1 Consensus size: 26
4043155 AAATCATAAT
* *
4043165 ATATAA-TACTATAAAATATAATTTA
1 ATATAATTATTATTAAATATAATTTA
*
4043190 ACATAATTATTATTAAATATAATTTA
1 ATATAATTATTATTAAATATAATTTA
* * *
4043216 ATAAAATTCTCAATATTAAATAT-ATTCTT
1 ATATAA-T-T-ATTATTAAATATAATT-TA
*
4043245 ATATGAA-T-TTACTAAAATCATAA--T-
1 ATAT-AATTATTA-TTAAAT-ATAATTTA
* *
4043269 ATATAA-TACTATAAAATATAATTTA
1 ATATAATTATTATTAAATATAATTTA
*
4043294 AAATAATTATTATTAAATATAATTTA
1 ATATAATTATTATTAAATATAATTTA
4043320 ATA
1 ATA
4043323 AAAATATATA
Statistics
Matches: 104, Mismatches: 15, Indels: 27
0.71 0.10 0.18
Matches are distributed among these distances:
22 4 0.04
23 9 0.09
24 7 0.07
25 13 0.12
26 45 0.43
27 4 0.04
28 5 0.05
29 15 0.14
30 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (26 bp):
ATATAATTATTATTAAATATAATTTA
Found at i:4043284 original size:104 final size:103
Alignment explanation
Indices: 4043103--4043325 Score: 385
Period size: 104 Copynumber: 2.2 Consensus size: 103
4043093 TAATAAAAAT
* *
4043103 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAATATTAAATTACTAAAATCATAATATA
1 ATATAATTTAATAAAATTCTCAATATTAAATATTCTTAATATGAAATTACTAAAATCATAATATA
*
4043168 TAATACTATAAAATATAATTTAACATAATTATTATTAA
66 TAATACTATAAAATATAATTTAAAATAATTATTATTAA
*
4043206 ATATAATTTAATAAAATTCTCAATATTAAATATATTCTT-ATATGAATTTACTAAAATCATAATA
1 ATATAATTTAATAAAATTCTCAATATT-AA-ATATTCTTAATATGAAATTACTAAAATCATAATA
4043270 TATAATACTATAAAATATAATTTAAAATAATTATTATTAA
64 TATAATACTATAAAATATAATTTAAAATAATTATTATTAA
4043310 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
4043326 ATATATAATT
Statistics
Matches: 114, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
103 26 0.23
104 80 0.70
105 8 0.07
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.42
Consensus pattern (103 bp):
ATATAATTTAATAAAATTCTCAATATTAAATATTCTTAATATGAAATTACTAAAATCATAATATA
TAATACTATAAAATATAATTTAAAATAATTATTATTAA
Found at i:4046198 original size:30 final size:30
Alignment explanation
Indices: 4046164--4046228 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
4046154 ACTTATTTTA
4046164 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
4046194 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
4046224 TTGTT
1 TTGTT
4046229 TGTTAAGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:4047843 original size:6 final size:6
Alignment explanation
Indices: 4047834--4047871 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
4047824 GCATCCGCAA
*
4047834 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAT CAGCAC CA
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CA
4047872 TGGGACAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.34, C:0.47, G:0.16, T:0.03
Consensus pattern (6 bp):
CAGCAC
Found at i:4049725 original size:18 final size:19
Alignment explanation
Indices: 4049689--4049726 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
4049679 AAGATTGGAT
*
4049689 TGTTAAAAAAAGTTTAAAA
1 TGTTAAAAAAAGTTGAAAA
4049708 TGTTAAAAAAA-TTGAAAA
1 TGTTAAAAAAAGTTGAAAA
4049726 T
1 T
4049727 TTTGATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (19 bp):
TGTTAAAAAAAGTTGAAAA
Found at i:4055205 original size:10 final size:11
Alignment explanation
Indices: 4055169--4055205 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
4055159 AAAAAAATAA
4055169 AAAAAGTATTTT
1 AAAAA-TATTTT
4055181 AAAAATATTTT
1 AAAAATATTTT
4055192 -AAAAT-TTTT
1 AAAAATATTTT
4055201 AAAAA
1 AAAAA
4055206 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 4 0.17
10 9 0.38
11 6 0.25
12 5 0.21
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:4056475 original size:16 final size:16
Alignment explanation
Indices: 4056444--4056476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4056434 TAAATAATTA
4056444 AATATGTATGTTTAAT
1 AATATGTATGTTTAAT
4056460 AATAT-TATGTTATAAT
1 AATATGTATGTT-TAAT
4056476 A
1 A
4056477 TTTATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (16 bp):
AATATGTATGTTTAAT
Found at i:4056679 original size:18 final size:20
Alignment explanation
Indices: 4056643--4056681 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
4056633 AAATTATATA
*
4056643 TTTATATAATATGATTATTG
1 TTTATATAATATGAATATTG
4056663 TTTATA-AATAT-AATATTG
1 TTTATATAATATGAATATTG
4056681 T
1 T
4056682 AGATAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 5 0.28
20 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (20 bp):
TTTATATAATATGAATATTG
Found at i:4057414 original size:17 final size:17
Alignment explanation
Indices: 4057394--4057426 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4057384 ATTTAATATA
*
4057394 TATATTTGATTAAAAAG
1 TATATTTAATTAAAAAG
4057411 TATATTTAATTAAAAA
1 TATATTTAATTAAAAA
4057427 TAAAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TATATTTAATTAAAAAG
Found at i:4061191 original size:30 final size:30
Alignment explanation
Indices: 4061157--4061219 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
4061147 ACTTATTTTA
4061157 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
4061187 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
4061217 TTG
1 TTG
4061220 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:4062171 original size:3 final size:3
Alignment explanation
Indices: 4062163--4062196 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
4062153 AAGCTTCACC
4062163 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4062197 ATTGCTACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:4062964 original size:16 final size:15
Alignment explanation
Indices: 4062936--4062965 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
4062926 ATATTAAAAT
4062936 TTAAATTATTATTAC
1 TTAAATTATTATTAC
4062951 TTAAATTAATTATTA
1 TTAAATT-ATTATTA
4062966 AAATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TTAAATTATTATTAC
Found at i:4063903 original size:18 final size:19
Alignment explanation
Indices: 4063872--4063913 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
4063862 AAGTTGGTGG
4063872 TTTTTTATTCTAATCTTATT
1 TTTTTTATTCTAAT-TTATT
*
4063892 TTTTTTA-T-TAATTTCTT
1 TTTTTTATTCTAATTTATT
4063909 TTTTT
1 TTTTT
4063914 ATAATAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 9 0.43
18 4 0.19
19 1 0.05
20 7 0.33
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTATTCTAATTTATT
Found at i:4067171 original size:19 final size:19
Alignment explanation
Indices: 4067147--4067185 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4067137 AATAAATTAC
*
4067147 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
4067166 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
4067185 T
1 T
4067186 GTTGGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:4069005 original size:18 final size:20
Alignment explanation
Indices: 4068977--4069013 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4068967 AATTATCTCT
4068977 AAAAAATGATTGAT-TTTTC
1 AAAAAATGATTGATATTTTC
4068996 AAAAAA-GATTGATATTTT
1 AAAAAATGATTGATATTTT
4069014 TTTATGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.41
Consensus pattern (20 bp):
AAAAAATGATTGATATTTTC
Found at i:4069385 original size:15 final size:16
Alignment explanation
Indices: 4069365--4069395 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
4069355 TTATTTAAAA
4069365 TTTAAAATT-ATTATT
1 TTTAAAATTAATTATT
4069380 TTTAAAATTAATTATT
1 TTTAAAATTAATTATT
4069396 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTAAAATTAATTATT
Found at i:4069550 original size:17 final size:17
Alignment explanation
Indices: 4069518--4069553 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4069508 ATAATATTTT
**
4069518 TTATTAATATTTTAATA
1 TTATTAATATAATAATA
4069535 TTATTAATATAATAATA
1 TTATTAATATAATAATA
4069552 TT
1 TT
4069554 GGACTTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATTAATATAATAATA
Found at i:4069711 original size:18 final size:21
Alignment explanation
Indices: 4069671--4069717 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
4069661 AAAAATAAAC
4069671 TTATTTTCTGTTAATCTATAA
1 TTATTTTCTGTTAATCTATAA
*
4069692 TT-TTTTTTGTTAATC-A-AA
1 TTATTTTCTGTTAATCTATAA
4069710 TTATTTTC
1 TTATTTTC
4069718 ATGAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.17
19 5 0.22
20 12 0.52
21 2 0.09
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.62
Consensus pattern (21 bp):
TTATTTTCTGTTAATCTATAA
Found at i:4081041 original size:37 final size:37
Alignment explanation
Indices: 4080991--4081064 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
4080981 TCTTCCTTTA
4080991 GACTTGGGTAAGCAAATATTCCTCCAACTAACCCTTG
1 GACTTGGGTAAGCAAATATTCCTCCAACTAACCCTTG
4081028 GACTTGGGTAAGCAAATATTCCTCCAACTAACCCTTG
1 GACTTGGGTAAGCAAATATTCCTCCAACTAACCCTTG
4081065 CACCAGTAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (37 bp):
GACTTGGGTAAGCAAATATTCCTCCAACTAACCCTTG
Found at i:4083008 original size:18 final size:16
Alignment explanation
Indices: 4082976--4083011 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
4082966 ATAGGATGAG
4082976 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
4082992 AATAAATTTAATTAATTA
1 AATAAATTT--TTAATTA
4083010 AA
1 AA
4083012 AATTTTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:4087884 original size:24 final size:23
Alignment explanation
Indices: 4087849--4087897 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
4087839 TAGCAACAGG
4087849 TTTTTTCTTTAATTT-TTTTAAA
1 TTTTTTCTTTAATTTATTTTAAA
*
4087871 TTTTTGTCATTTAATTTATTTTTAA
1 TTTTT-TC-TTTAATTTATTTTAAA
4087896 TT
1 TT
4087898 CACTACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 2 0.09
24 8 0.35
25 8 0.35
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTTTCTTTAATTTATTTTAAA
Found at i:4092012 original size:18 final size:16
Alignment explanation
Indices: 4091980--4092015 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
4091970 ATAGGATGAG
4091980 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
4091996 AATAAATTTAATTAATTA
1 AATAAATTT--TTAATTA
4092014 AA
1 AA
4092016 AATTTTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:4096889 original size:24 final size:23
Alignment explanation
Indices: 4096854--4096902 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
4096844 TAGCAACAGG
4096854 TTTTTTCTTTAATTT-TTTTAAA
1 TTTTTTCTTTAATTTATTTTAAA
*
4096876 TTTTTGTCATTTAATTTATTTTTAA
1 TTTTT-TC-TTTAATTTATTTTAAA
4096901 TT
1 TT
4096903 CACTACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 2 0.09
24 8 0.35
25 8 0.35
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTTTCTTTAATTTATTTTAAA
Found at i:4101018 original size:18 final size:16
Alignment explanation
Indices: 4100986--4101021 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
4100976 ATAGGATGAG
4100986 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
4101002 AATAAATTTAATTAATTA
1 AATAAATTT--TTAATTA
4101020 AA
1 AA
4101022 AATTTTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:4105897 original size:24 final size:23
Alignment explanation
Indices: 4105862--4105910 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
4105852 TAGCAACAGG
4105862 TTTTTTCTTTAATTT-TTTTAAA
1 TTTTTTCTTTAATTTATTTTAAA
*
4105884 TTTTTGTCATTTAATTTATTTTTAA
1 TTTTT-TC-TTTAATTTATTTTAAA
4105909 TT
1 TT
4105911 CACTACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 2 0.09
24 8 0.35
25 8 0.35
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTTTCTTTAATTTATTTTAAA
Found at i:4110041 original size:18 final size:16
Alignment explanation
Indices: 4110009--4110044 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
4109999 ATAGGATGAG
4110009 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
4110025 AATAAATTTAATTAATTA
1 AATAAATTT--TTAATTA
4110043 AA
1 AA
4110045 AATTTTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:4112633 original size:98 final size:98
Alignment explanation
Indices: 4112454--4112650 Score: 333
Period size: 98 Copynumber: 2.0 Consensus size: 98
4112444 GTACAATAAA
* *
4112454 ACTTTAAAGGAACACTCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACACTCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * *
4112519 CCTTTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGAAATATTTCCTTT
4112552 ACTTTAAAAGAACA-TCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
1 ACTTTAAAAGAACACT-CACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
4112616 TCCTTTAAAATCCCAAACTCGAAATATTTCCTTT
65 TCCTTTAAAATCCCAAACTCGAAATATTTCCTTT
4112650 A
1 A
4112651 TTGTTTTTAG
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
97 1 0.01
98 92 0.99
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACACTCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGAAATATTTCCTTT
Found at i:4113556 original size:25 final size:25
Alignment explanation
Indices: 4113503--4113555 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
4113493 ATATATAGCT
*
4113503 AAAATAATAATAATAATTACATATG
1 AAAATAATAATAATAATTACATATA
4113528 AAAATAATAATAATAATTACAT-TA
1 AAAATAATAATAATAATTACATATA
4113552 AAAA
1 AAAA
4113556 AATTAACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAATAATAATAATAATTACATATA
Found at i:4114157 original size:40 final size:41
Alignment explanation
Indices: 4114105--4114182 Score: 131
Period size: 40 Copynumber: 1.9 Consensus size: 41
4114095 ACAAAATCAT
*
4114105 ATATTCTAAGATTGCATATTATATCTAAGATTGCATATATC
1 ATATTCTAAGATTGCATATCATATCTAAGATTGCATATATC
*
4114146 ATATT-TAAGATTGCATATCATATCTAATATTGCATAT
1 ATATTCTAAGATTGCATATCATATCTAAGATTGCATAT
4114183 CCTCAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 30 0.86
41 5 0.14
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (41 bp):
ATATTCTAAGATTGCATATCATATCTAAGATTGCATATATC
Found at i:4114183 original size:19 final size:19
Alignment explanation
Indices: 4114109--4114183 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
4114099 AATCATATAT
*
4114109 TCTAAGATTGCATATTATA
1 TCTAAGATTGCATATCATA
4114128 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
4114149 TTTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
4114168 TCTAATATTGCATATC
1 TCTAAGATTGCATATC
4114184 CTCAAAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:4118705 original size:25 final size:24
Alignment explanation
Indices: 4118660--4118706 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
4118650 AAAACTTGAC
*
4118660 ATTTTTCTAATTTGACTTTTAATT
1 ATTTTTCTAATTTGAATTTTAATT
4118684 ATTTTATCTAATTT-AATATTTAA
1 ATTTT-TCTAATTTGAAT-TTTAA
4118707 ACTCAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTTTCTAATTTGAATTTTAATT
Found at i:4123819 original size:31 final size:31
Alignment explanation
Indices: 4123784--4123851 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
4123774 TAGTAACTAG
* *
4123784 ATTATTCAAAAGTTTTCATTTGAGTCATTGA
1 ATTATTAAAAAGTTTTCATTTAAGTCATTGA
* *
4123815 ATTATTAAAAATTTTTCATTTAATTCATTGA
1 ATTATTAAAAAGTTTTCATTTAAGTCATTGA
*
4123846 ACTATT
1 ATTATT
4123852 TGAAAGTGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (31 bp):
ATTATTAAAAAGTTTTCATTTAAGTCATTGA
Found at i:4127888 original size:39 final size:39
Alignment explanation
Indices: 4127829--4127906 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
4127819 TTTATGAAAT
4127829 GAAACAGAGATAGGAACTATGGCAGAGGAGGAACATAAA
1 GAAACAGAGATAGGAACTATGGCAGAGGAGGAACATAAA
*
4127868 GAAATAGAGATAGGAACTATGGCAGAGGAGGAACATAAA
1 GAAACAGAGATAGGAACTATGGCAGAGGAGGAACATAAA
4127907 ATATGTGAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.49, C:0.09, G:0.31, T:0.12
Consensus pattern (39 bp):
GAAACAGAGATAGGAACTATGGCAGAGGAGGAACATAAA
Found at i:4129793 original size:21 final size:19
Alignment explanation
Indices: 4129755--4129794 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
4129745 AGGGATGGTA
4129755 ATTTGTGTTTAAATTTTAT
1 ATTTGTGTTTAAATTTTAT
*
4129774 ATTTGATGTTTTAATATTTAT
1 ATTTG-TGTTTAAAT-TTTAT
4129795 TGTCCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (19 bp):
ATTTGTGTTTAAATTTTAT
Found at i:4130822 original size:12 final size:11
Alignment explanation
Indices: 4130795--4130821 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4130785 TATTATTTTA
4130795 ATTTTAAAAAT
1 ATTTTAAAAAT
4130806 ATTTTAAAAAT
1 ATTTTAAAAAT
4130817 ATTTT
1 ATTTT
4130822 TTTATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:4130842 original size:20 final size:19
Alignment explanation
Indices: 4130805--4130843 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
4130795 ATTTTAAAAA
*
4130805 TATTTTAAAAATATTTTTT
1 TATTTTAAAAATAATTTTT
*
4130824 TATTTTTAAAATAAATTTTT
1 TATTTTAAAAAT-AATTTTT
4130844 GGTGTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTAAAAATAATTTTT
Done.