Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 15 of 211
Found at i:4131403 original size:29 final size:30
Alignment explanation
Indices: 4131356--4131436 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 30
4131346 AAAATATAAT
* * * *
4131356 TATATTAATTAATATTTTTAAGGGCATTAA
1 TATATTAATTTATAATTTTAAGAGAATTAA
* *
4131386 T-TATTAATTTTTTATTTT-AGAGAATTAA
1 TATATTAATTTATAATTTTAAGAGAATTAA
4131414 TATATTAATTTATAATTTTAAGA
1 TATATTAATTTATAATTTTAAGA
4131437 ATTGAAAAGT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 9 0.22
29 28 0.68
30 4 0.10
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (30 bp):
TATATTAATTTATAATTTTAAGAGAATTAA
Found at i:4140441 original size:21 final size:21
Alignment explanation
Indices: 4140415--4140455 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4140405 ATCTGCTCAA
* *
4140415 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
4140436 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
4140456 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:4146891 original size:24 final size:23
Alignment explanation
Indices: 4146856--4146917 Score: 56
Period size: 24 Copynumber: 2.7 Consensus size: 23
4146846 ATTTATATAT
4146856 ATTTTTT-AAATTTAATAAAGAA
1 ATTTTTTAAAATTTAATAAAGAA
* *
4146878 ATTTTTTAATAATTGT-TTTAAGAA
1 ATTTTTTAA-AATT-TAATAAAGAA
*
4146902 AATTTTTAACAATTTA
1 ATTTTTTAA-AATTTA
4146918 CTTTATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
22 7 0.22
23 2 0.06
24 22 0.69
25 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (23 bp):
ATTTTTTAAAATTTAATAAAGAA
Found at i:4147034 original size:89 final size:90
Alignment explanation
Indices: 4146928--4147106 Score: 315
Period size: 89 Copynumber: 2.0 Consensus size: 90
4146918 CTTTATTAAA
*
4146928 AAATTGATAGAAACTTTATGGTTACCATTTCACAATAAAAGCACAATTTACATGGCTC-TTTTCT
1 AAATTGACAGAAACTTTATGGTTACCATTTCACAATAAAAGCACAATTTACATGGCTCTTTTTCT
*
4146992 AGTGGATAAAATGGACGGTGGCTGC
66 AGTGGATAAAACGGACGGTGGCTGC
*
4147017 AAATTGACAGAAACTTTATGGTTACCATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTTCT
1 AAATTGACAGAAACTTTATGGTTACCATTTCACAATAAAAGCACAATTTACATGGCTCTTTTTCT
*
4147082 AGTGGATAAAACGGATGGTGGCTGC
66 AGTGGATAAAACGGACGGTGGCTGC
4147107 CCCTAATTAA
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
89 56 0.66
90 29 0.34
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (90 bp):
AAATTGACAGAAACTTTATGGTTACCATTTCACAATAAAAGCACAATTTACATGGCTCTTTTTCT
AGTGGATAAAACGGACGGTGGCTGC
Found at i:4161855 original size:9 final size:10
Alignment explanation
Indices: 4161843--4161922 Score: 71
Period size: 9 Copynumber: 8.2 Consensus size: 10
4161833 TATATTGATT
4161843 AAAATTATAAA
1 AAAATTAT-AA
*
4161854 AAAATTATAC
1 AAAATTATAA
*
4161864 ATAA-TATAA
1 AAAATTATAA
*
4161873 ATAATTCA-AA
1 AAAATT-ATAA
4161883 AAAATT-TAA
1 AAAATTATAA
4161892 AAAATT-TAA
1 AAAATTATAA
4161901 AAAATT-TAA
1 AAAATTATAA
4161910 AAAATTTATAA
1 AAAA-TTATAA
4161921 AA
1 AA
4161923 TATATAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
9 32 0.53
10 14 0.23
11 14 0.23
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTATAA
Found at i:4161893 original size:10 final size:10
Alignment explanation
Indices: 4161875--4161945 Score: 58
Period size: 9 Copynumber: 7.0 Consensus size: 10
4161865 TAATATAAAT
*
4161875 AATTCAAAAA
1 AATTTAAAAA
4161885 AATTT-AAAA
1 AATTTAAAAA
4161894 AATTT-AAAA
1 AATTTAAAAA
4161903 AATTT-AAAA
1 AATTTAAAAA
4161912 AATTTATAAAA
1 AATTTA-AAAA
* *
4161923 TATATAAATATA
1 AATTTAAA-A-A
4161935 AATTTCAAAAA
1 AATTT-AAAAA
4161946 GTCAAATATG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 27 0.53
10 6 0.12
11 10 0.20
12 5 0.10
13 3 0.06
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:4161923 original size:9 final size:9
Alignment explanation
Indices: 4161881--4161923 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
4161871 AAATAATTCA
4161881 AAAAAATTT
1 AAAAAATTT
4161890 AAAAAATTT
1 AAAAAATTT
4161899 AAAAAATTT
1 AAAAAATTT
4161908 AAAAAATTT
1 AAAAAATTT
*
4161917 ATAAAAT
1 AAAAAAT
4161924 ATATAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAAATTT
Found at i:4162201 original size:19 final size:19
Alignment explanation
Indices: 4162179--4162229 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
4162169 TTCTTATAAA
4162179 ATTTTCA-ATTTTATATATT
1 ATTTTCATATTTTA-ATATT
*
4162198 ATTTTGATATTTTAATATTT
1 ATTTTCATATTTTAATA-TT
4162218 ATATTT-ATATTT
1 AT-TTTCATATTT
4162230 ATATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 9 0.32
20 16 0.57
21 3 0.11
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTTTCATATTTTAATATT
Found at i:4162223 original size:6 final size:6
Alignment explanation
Indices: 4162188--4162239 Score: 61
Period size: 6 Copynumber: 8.2 Consensus size: 6
4162178 AATTTTCAAT
4162188 TTTATA TATTAT- TTTGATA TTTTAATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA T-TTATA TTT-ATA -TTT-ATA TTTATA TTTATA TTTATA TTTATA
4162239 T
1 T
4162240 ATTTTAGAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
5 2 0.05
6 26 0.63
7 7 0.17
8 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (6 bp):
TTTATA
Found at i:4170414 original size:20 final size:19
Alignment explanation
Indices: 4170391--4170442 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 19
4170381 TAACCATATT
*
4170391 CCAAGATTTCTAATGGACTA
1 CCAAAATTTCTAATGGA-TA
* * *
4170411 CCAATATTTTTAATTGATA
1 CCAAAATTTCTAATGGATA
*
4170430 TCAAAATTTCTAA
1 CCAAAATTTCTAA
4170443 GAGTACCTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
CCAAAATTTCTAATGGATA
Found at i:4170765 original size:20 final size:20
Alignment explanation
Indices: 4170734--4170781 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
4170724 ATTGGTATTA
4170734 CTTAAA-AAA-TTTGGTACAC
1 CTTAAAGAAATTTTGGTAC-C
4170753 CTTAAAGAAATTTTGGTACC
1 CTTAAAGAAATTTTGGTACC
4170773 CTTCAAAGA
1 CTT-AAAGA
4170782 TTTCAGATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.23
20 7 0.27
21 13 0.50
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (20 bp):
CTTAAAGAAATTTTGGTACC
Found at i:4177926 original size:39 final size:41
Alignment explanation
Indices: 4177881--4177993 Score: 169
Period size: 40 Copynumber: 2.8 Consensus size: 41
4177871 GGCGTTTGGA
*
4177881 TAAAAAACGCCACTAAAGATCGAGTATTAGCGGCGC-TATC
1 TAAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTATC
*
4177921 TAAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTC
1 TAAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTATC
* *
4177962 T-AAAAACGCCGCTAAAAAT-GAGCATTAGCGGC
1 TAAAAAACGCCGCTAAAGATCGAGTATTAGCGGC
4177994 TTTTTCCAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
39 12 0.18
40 52 0.76
41 4 0.06
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (41 bp):
TAAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTATC
Found at i:4178011 original size:39 final size:40
Alignment explanation
Indices: 4177883--4178017 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
4177873 CGTTTGGATA
* * * * *
4177883 AAAAACGCCACTAAAGATCGAGTATTAGCGGCGC-TATCTA
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTTC-C
* * *
4177923 AAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTCT
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTTCC
*
4177963 AAAAACGCCGCTAAAAAT-GAGCATTAGCGGC-TTTTTCC
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTTCC
4178001 AAAAAGCGCCGC-AAAAA
1 AAAAA-CGCCGCTAAAAA
4178018 CCTAAACCTA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
38 15 0.17
39 18 0.21
40 50 0.58
41 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTTCC
Found at i:4178715 original size:39 final size:39
Alignment explanation
Indices: 4178653--4178730 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
4178643 GCCGCAAAAT
* **
4178653 ATCTGAACTAAAACGCACCGTTTTGGTTTCGATGTATAC
1 ATCTGAACTAAAACGCACAGTTTTAATTTCGATGTATAC
* ** *
4178692 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATAC
1 ATCTGAACTAAAACGCACAGTTTTAATTTCGATGTATAC
4178731 TTATATTAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (39 bp):
ATCTGAACTAAAACGCACAGTTTTAATTTCGATGTATAC
Found at i:4178830 original size:115 final size:116
Alignment explanation
Indices: 4178692--4179051 Score: 296
Period size: 116 Copynumber: 3.1 Consensus size: 116
4178682 CGATGTATAC
4178692 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
1 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
4178757 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAATCGCCACAAATT
66 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAATCGCCACAAATT
* * * * * * *
4178808 ATCTTAAC-AAAACGCAG-CGTTTT-GTCTT-AAGCTAT-GTTACATTTAGTGGCGCGTAC-AGG
1 ATCTTAACTAAAACGC-GTAGTTTTAATTTTGATG-TATACTTATA-TTAGTGGCGCTTACTAGG
** * * ** ** * * *** *
4178867 AAAACGCCGCAAAATACCT-GAACCAAAACGCACCGTTTTGG-T--CTCG--ATGTATAC
63 AAAACGCCGTTAAAGA-ATAGATTC---A-GCGGCGCTTTGGATAAATCGCCACAAAT-T
4178921 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
1 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
* * * * * **
4178986 ACGCCGTTAAAGAATAGCTTCCGCGGCGCTTTGGATAAAGCGCCGCCACGT
66 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAATCGCCACAAATT
4179037 ATCTTAAC-AAAACGC
1 ATCTTAACTAAAACGC
4179052 AGCATTTTGT
Statistics
Matches: 175, Mismatches: 48, Indels: 43
0.66 0.18 0.16
Matches are distributed among these distances:
112 12 0.07
113 35 0.20
114 35 0.20
115 41 0.23
116 43 0.25
117 9 0.05
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (116 bp):
ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAATCGCCACAAATT
Found at i:4178870 original size:229 final size:229
Alignment explanation
Indices: 4178471--4179152 Score: 1098
Period size: 229 Copynumber: 3.0 Consensus size: 229
4178461 CCGCAAAAAT
4178471 ATCTTAACTAAAACGCGTAGTTTTAATTTTGA--T-TA--TATA--AGTGGCGCTTACTA-GAAA
1 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
4178528 ACGCCGTTAAAGAATAGCATT-AGCGGCGC-TT-GATCCAAAGCGCCGCAAAGTATCTTAACAAA
66 ACGCCGTTAAAGAATAG-ATTCAGCGGCGCTTTGGAT--AAAGCGCCGCAAAGTATCTTAACAAA
* * *
4178590 ACGCAGTGTTTCGTATTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATAT
128 ACGCAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATAT
* *
4178655 CTGAACTAAAACGCACCGTTTTGGTTTCGATGTATAC
193 CTGAACCAAAACGCACCGTTTTGGTCTCGATGTATAC
4178692 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
1 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
* * *
4178757 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAATCGCCACAAATTATCTTAACAAAACG
66 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAAGCGCCGCAAAGTATCTTAACAAAACG
* * *
4178822 CAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCGTACAGGAAAACGCCGCAAAATACCTG
131 CAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATATCTG
4178887 AACCAAAACGCACCGTTTTGGTCTCGATGTATAC
196 AACCAAAACGCACCGTTTTGGTCTCGATGTATAC
4178921 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
1 ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
* * * *
4178986 ACGCCGTTAAAGAATAGCTTCCGCGGCGCTTTGGATAAAGCGCCGCCACGTATCTTAACAAAACG
66 ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAAGCGCCGCAAAGTATCTTAACAAAACG
* * *
4179051 CAGCATTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGAAAAACGCCACAAAATATCTG
131 CAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATATCTG
4179116 AACCAAAACGCACCGTTTTGGTCTCGATGTATAC
196 AACCAAAACGCACCGTTTTGGTCTCGATGTATAC
4179150 ATC
1 ATC
4179153 AATTAGTACA
Statistics
Matches: 426, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
221 32 0.08
223 1 0.00
224 2 0.00
226 4 0.01
228 17 0.04
229 365 0.86
230 2 0.00
231 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (229 bp):
ATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTAGGAAA
ACGCCGTTAAAGAATAGATTCAGCGGCGCTTTGGATAAAGCGCCGCAAAGTATCTTAACAAAACG
CAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATATCTG
AACCAAAACGCACCGTTTTGGTCTCGATGTATAC
Found at i:4178925 original size:113 final size:112
Alignment explanation
Indices: 4178579--4179152 Score: 325
Period size: 113 Copynumber: 5.0 Consensus size: 112
4178569 GCCGCAAAGT
* * * *
4178579 ATCTTAACAAAACGCAGTGTTTCGTATTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACG
1 ATCTTAACAAAACGCAGAGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTACAGGAAAACG
* *
4178644 CCGCAAAATATCTGAACTAAAACGCACCGTTTTGGTTTCGATGTATAC
66 CCGCAAAATA-CTGAACCAAAACGCACCGTTTTGGTATCGATGTATAC
* * * * *
4178692 ATCTTAACTAAAACGC-GTAGTTTTAATTTTGATG-TATACTTATA-TTAGTGGCGCTTACTAGG
1 ATCTTAAC-AAAACGCAG-AGTTTT-GTCTT-AAGCTAT-GTTACATTTAGTGGCGCTTAC-AGG
** * * ** ** * *** *
4178754 AAAACGCCGTTAAAGAATAGATTC---A-GCGGCGCTTTGGATAAATCGCCACAAAT-T
60 AAAACGCCGCAAAATACT-GAACCAAAACGCACCGTTTTGG-T--ATCG--ATGTATAC
* *
4178808 ATCTTAACAAAACGCAGCGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCGTACAGGAAAACG
1 ATCTTAACAAAACGCAGAGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTACAGGAAAACG
*
4178873 CCGCAAAATACCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATAC
66 CCGCAAAATA-CTGAACCAAAACGCACCGTTTTGGTATCGATGTATAC
* * * * *
4178921 ATCTTAACTAAAACGC-GTAGTTTTAATTTTGATG-TATACTTATA-TTAGTGGCGCTTACTAGG
1 ATCTTAAC-AAAACGCAG-AGTTTT-GTCTT-AAGCTAT-GTTACATTTAGTGGCGCTTAC-AGG
** * * * *** ** * * ** **
4178983 AAAACGCCGTTAAAGAAT--AGC-TTCCGCGGCGCTTTGGATAAAGCGCCG-CCAC
60 AAAACGCCGCAAAATACTGAACCAAAACGCACCGTTTTGG-T--ATCGATGTATAC
* *
4179035 GTATCTTAACAAAACGCAGCA-TTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGAAAA
1 --ATCTTAACAAAACGCAG-AGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTACAGGAAA
* *
4179099 ACGCCACAAAATATCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATAC
63 ACGCCGCAAAATA-CTGAACCAAAACGCACCGTTTTGGTATCGATGTATAC
4179150 ATC
1 ATC
4179153 AATTAGTACA
Statistics
Matches: 327, Mismatches: 94, Indels: 80
0.65 0.19 0.16
Matches are distributed among these distances:
112 22 0.07
113 71 0.22
114 71 0.22
115 71 0.22
116 70 0.21
117 22 0.07
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30
Consensus pattern (112 bp):
ATCTTAACAAAACGCAGAGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTACAGGAAAACG
CCGCAAAATACTGAACCAAAACGCACCGTTTTGGTATCGATGTATAC
Found at i:4179650 original size:22 final size:22
Alignment explanation
Indices: 4179625--4179677 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
4179615 GGGTTTAAGA
*
4179625 GTTTAAATTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
4179647 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
4179669 G-TTAAAGTT
1 GTTTAAAGTT
4179678 AGGGGCCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (22 bp):
GTTTAAAGTTTAAAGGTTACGG
Found at i:4179660 original size:29 final size:29
Alignment explanation
Indices: 4179579--4179661 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
4179569 TTTTGAGTGT
* * * *
4179579 AAGGTTACGGGTTTAGAGTGTAAGGTTTG
1 AAGGTTACGGGTTTAAAGTTTAAAGTTTA
* * *
4179608 TAGTTTA-GGGTTTAAGAGTTTAAATTTTA
1 AAGGTTACGGGTTTAA-AGTTTAAAGTTTA
4179637 AAGGTTACGGGTTTAAAGTTTAAAG
1 AAGGTTACGGGTTTAAAGTTTAAAG
4179662 GTTACGGGTT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 7 0.17
29 27 0.64
30 8 0.19
ACGTcount: A:0.30, C:0.02, G:0.29, T:0.39
Consensus pattern (29 bp):
AAGGTTACGGGTTTAAAGTTTAAAGTTTA
Found at i:4180255 original size:23 final size:23
Alignment explanation
Indices: 4180229--4180285 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
4180219 TTTCGTATTC
4180229 CCCCCAATTCCCCGATTTCATTT
1 CCCCCAATTCCCCGATTTCATTT
4180252 CCCCCAATTCCCCGATTTCATTT
1 CCCCCAATTCCCCGATTTCATTT
4180275 CCCCCAATTCC
1 CCCCCAATTCC
4180286 TATTCCCCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.18, C:0.47, G:0.04, T:0.32
Consensus pattern (23 bp):
CCCCCAATTCCCCGATTTCATTT
Found at i:4180344 original size:41 final size:41
Alignment explanation
Indices: 4180287--4180374 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
4180277 CCCAATTCCT
4180287 ATTCCCCCAGTTTCCCCGATTTAATTTCCCTAAACCCCCAA
1 ATTCCCCCAGTTTCCCCGATTTAATTTCCCTAAACCCCCAA
* *
4180328 ATTCCCCCAGTTTCCCCGATTTAATTTCCCTAAATCCCTAA
1 ATTCCCCCAGTTTCCCCGATTTAATTTCCCTAAACCCCCAA
4180369 ATTCCC
1 ATTCCC
4180375 AAATCCCCCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.24, C:0.40, G:0.05, T:0.32
Consensus pattern (41 bp):
ATTCCCCCAGTTTCCCCGATTTAATTTCCCTAAACCCCCAA
Found at i:4181785 original size:27 final size:25
Alignment explanation
Indices: 4181725--4181794 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
4181715 AAAAAAAAAA
* * *
4181725 ACTTACATAACTTAGATAATATCCT
1 ACTTACATAAATTAAATAATATCAT
* *
4181750 ACATA-ATAAATTACATAATAATACAT
1 ACTTACATAAATTAAATAAT-AT-CAT
4181776 ACTTACATAAATTAAATAA
1 ACTTACATAAATTAAATAA
4181795 GTTACGTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 12 0.33
25 6 0.17
26 6 0.17
27 12 0.33
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.33
Consensus pattern (25 bp):
ACTTACATAAATTAAATAATATCAT
Found at i:4181813 original size:25 final size:25
Alignment explanation
Indices: 4181779--4181832 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
4181769 AATACATACT
* * *
4181779 TACATAAATTAAATAAGTTACGTAA
1 TACACAAATTAAATAACTTACATAA
**
4181804 TACACAAATTTCATAACTTACATAA
1 TACACAAATTAAATAACTTACATAA
4181829 TACA
1 TACA
4181833 TAATTTACAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.50, C:0.15, G:0.04, T:0.31
Consensus pattern (25 bp):
TACACAAATTAAATAACTTACATAA
Found at i:4181841 original size:9 final size:9
Alignment explanation
Indices: 4181771--4182482 Score: 235
Period size: 9 Copynumber: 80.7 Consensus size: 9
4181761 TACATAATAA
4181771 TACAT-ACT
1 TACATAACT
*
4181779 TACATAAAT
1 TACATAACT
* *
4181788 TAAATAAGT
1 TACATAACT
*
4181797 TACGTAA--
1 TACATAACT
* *
4181804 TACACAAAT
1 TACATAACT
*
4181813 TTCATAACT
1 TACATAACT
4181822 TACATAA--
1 TACATAACT
*
4181829 TACATAATT
1 TACATAACT
4181838 TACATAA--
1 TACATAACT
*
4181845 TACACAACT
1 TACATAACT
*
4181854 AACATAACT
1 TACATAACT
4181863 TACATAA--
1 TACATAACT
**
4181870 TACATATTT
1 TACATAACT
*
4181879 TACATCACT
1 TACATAACT
4181888 TACATAA--
1 TACATAACT
*
4181895 GACATAACT
1 TACATAACT
*
4181904 TACATAAGT
1 TACATAACT
*
4181913 TTCATAA--
1 TACATAACT
*
4181920 TACACAACT
1 TACATAACT
*
4181929 GACATAACT
1 TACATAACT
*
4181938 TACATAAGT
1 TACATAACT
*
4181947 TTCATAA--
1 TACATAACT
*
4181954 TACACAACT
1 TACATAACT
* *
4181963 TACACAGCT
1 TACATAACT
4181972 TACATAACT
1 TACATAACT
*
4181981 TACACAACT
1 TACATAACT
4181990 TACATAACT
1 TACATAACT
*
4181999 TACATTAATATT
1 TACA-T-A-ACT
*
4182011 ATACATAAAT
1 -TACATAACT
4182021 TACATAACT
1 TACATAACT
*
4182030 TACATTAATATT
1 TACA-T-A-ACT
*
4182042 ATACATAAAT
1 -TACATAACT
*
4182052 TACATTAATATT
1 TACA-T-A-ACT
*
4182064 ATACATAAAT
1 -TACATAACT
4182074 TACATAACT
1 TACATAACT
4182083 TA-ATTAA-T
1 TACA-TAACT
*
4182091 T-TAT-A--
1 TACATAACT
*
4182096 TACATAAAT
1 TACATAACT
4182105 TACATAACT
1 TACATAACT
*
4182114 TACATTAATTTT
1 TACA-TAA--CT
4182126 ATACATAACT
1 -TACATAACT
4182136 TACATAACT
1 TACATAACT
4182145 TA-ATTAA-T
1 TACA-TAACT
4182153 TA-AT-A--
1 TACATAACT
*
4182158 TACATAAAT
1 TACATAACT
*
4182167 TACATTAATATT
1 TACA-T-A-ACT
*
4182179 ATACATAAAT
1 -TACATAACT
4182189 TACATAACT
1 TACATAACT
4182198 TA-ATTAA-T
1 TACA-TAACT
*
4182206 T-TAT-A--
1 TACATAACT
*
4182211 TACATAAAT
1 TACATAACT
4182220 TACATAACT
1 TACATAACT
*
4182229 TACATTAATTTT
1 TACA-TAA--CT
4182241 ATACATAACT
1 -TACATAACT
4182251 TACATAACT
1 TACATAACT
4182260 TA-ATTAA-T
1 TACA-TAACT
*
4182268 ATACATAAAT
1 -TACATAACT
4182278 TACATAACT
1 TACATAACT
* *
4182287 TACTTTAATGTT
1 TAC-ATAA--CT
*
4182299 ATACATAAAT
1 -TACATAACT
4182309 TACATAACT
1 TACATAACT
**
4182318 TAGTTAA-T
1 TACATAACT
*
4182326 TA-AT-ATT
1 TACATAACT
4182333 ATACATAACT
1 -TACATAACT
4182343 TAC--AACT
1 TACATAACT
4182350 TACATAACT
1 TACATAACT
4182359 TAC--AACT
1 TACATAACT
4182366 TACATAACT
1 TACATAACT
***
4182375 TACATTTTTT
1 TACA-TAACT
*
4182385 TA-ATTA-T
1 TACATAACT
* *
4182392 T-CGTAAAT
1 TACATAACT
*
4182400 TACATAACC
1 TACATAACT
* *
4182409 TACTTAATT
1 TACATAACT
*
4182418 TTCATAA--
1 TACATAACT
*
4182425 TAAATAACT
1 TACATAACT
4182434 TACATAACT
1 TACATAACT
4182443 TACATAA--
1 TACATAACT
4182450 TACATAACT
1 TACATAACT
* *
4182459 TATATGACT
1 TACATAACT
4182468 TACATAACT
1 TACATAACT
4182477 TACATA
1 TACATA
4182483 GCATAATTTT
Statistics
Matches: 536, Mismatches: 88, Indels: 159
0.68 0.11 0.20
Matches are distributed among these distances:
5 4 0.01
6 10 0.02
7 78 0.15
8 29 0.05
9 324 0.60
10 32 0.06
11 8 0.01
12 24 0.04
13 27 0.05
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.37
Consensus pattern (9 bp):
TACATAACT
Found at i:4181851 original size:41 final size:41
Alignment explanation
Indices: 4181772--4181883 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
4181762 ACATAATAAT
* * * *
4181772 ACAT-ACTTACATAAATTAAATAAGTTACGTAATACACAAATT
1 ACATAACTTACAT-AA-TACATAATTTACATAATACACAAATA
* *
4181814 TCATAACTTACATAATACATAATTTACATAATACACAACTA
1 ACATAACTTACATAATACATAATTTACATAATACACAAATA
*
4181855 ACATAACTTACATAATACATATTTTACAT
1 ACATAACTTACATAATACATAATTTACAT
4181884 CACTTACATA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 48 0.79
42 5 0.08
43 8 0.13
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (41 bp):
ACATAACTTACATAATACATAATTTACATAATACACAAATA
Found at i:4181858 original size:25 final size:25
Alignment explanation
Indices: 4181829--4181944 Score: 133
Period size: 25 Copynumber: 4.6 Consensus size: 25
4181819 ACTTACATAA
*
4181829 TACATAATTTACATAATACACAACT
1 TACATAACTTACATAATACACAACT
* * **
4181854 AACATAACTTACATAATACATATTT
1 TACATAACTTACATAATACACAACT
* * *
4181879 TACATCACTTACATAAGACATAACT
1 TACATAACTTACATAATACACAACT
* *
4181904 TACATAAGTTTCATAATACACAACT
1 TACATAACTTACATAATACACAACT
*
4181929 GACATAACTTACATAA
1 TACATAACTTACATAA
4181945 GTTTCATAAT
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.31
Consensus pattern (25 bp):
TACATAACTTACATAATACACAACT
Found at i:4181868 original size:34 final size:34
Alignment explanation
Indices: 4181829--4181984 Score: 131
Period size: 34 Copynumber: 4.4 Consensus size: 34
4181819 ACTTACATAA
4181829 TACATAATTTACATAATACACAACTAACATAACT
1 TACATAATTTACATAATACACAACTAACATAACT
*
4181863 TACATAA--TACATATTTTACATCACTTACATAAGACATAACT
1 TACATAATTTACATA--ATACA-CA---AC-T-A-ACATAACT
*
4181904 TACATAAGTTT-CATAATACACAACTGACATAACT
1 TACATAA-TTTACATAATACACAACTAACATAACT
* * *
4181938 TACATAAGTTT-CATAATACACAACTTACACAGCT
1 TACATAA-TTTACATAATACACAACTAACATAACT
*
4181972 TACATAACTTACA
1 TACATAATTTACA
4181985 CAACTTACAT
Statistics
Matches: 102, Mismatches: 7, Indels: 26
0.76 0.05 0.19
Matches are distributed among these distances:
32 6 0.06
33 2 0.02
34 59 0.58
35 2 0.02
36 1 0.01
37 2 0.02
38 2 0.02
39 1 0.01
40 3 0.03
41 19 0.19
43 4 0.04
44 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (34 bp):
TACATAATTTACATAATACACAACTAACATAACT
Found at i:4181900 original size:41 final size:40
Alignment explanation
Indices: 4181772--4181910 Score: 122
Period size: 41 Copynumber: 3.4 Consensus size: 40
4181762 ACATAATAAT
* * *
4181772 ACAT-ACTTACATAAATTAAATAAGTTACGTAATACACAA-A
1 ACATAACTTACAT-AA-TACATAATTTACATAATACACAACA
*
4181812 TTTCATAACTTACATAATACATAATTTACATAATACACAACTA
1 --ACATAACTTACATAATACATAATTTACATAATACACAAC-A
* * * *
4181855 ACATAACTTACATAATACATATTTTACATCACTTACATAA-G
1 ACATAACTTACATAATACATAATTTACAT-A-ATACACAACA
4181896 ACATAACTTACATAA
1 ACATAACTTACATAA
4181911 GTTTCATAAT
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
41 62 0.75
42 6 0.07
43 15 0.18
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (40 bp):
ACATAACTTACATAATACATAATTTACATAATACACAACA
Found at i:4181980 original size:18 final size:18
Alignment explanation
Indices: 4181818--4182002 Score: 99
Period size: 16 Copynumber: 10.9 Consensus size: 18
4181808 CAAATTTCAT
*
4181818 AACTTACATAA--TACAT
1 AACTTACATAACTTACAC
*
4181834 AATTTACATAA--TACAC
1 AACTTACATAACTTACAC
* *
4181850 AACTAACATAACTTACAT
1 AACTTACATAACTTACAC
**
4181868 AA--TACATATTTTACATC
1 AACTTACATAACTTACA-C
* *
4181885 -ACTTACATAA--GACAT
1 AACTTACATAACTTACAC
* * *
4181900 AACTTACATAAGTTTCAT
1 AACTTACATAACTTACAC
* * *
4181918 AA--TACACAACTGACAT
1 AACTTACATAACTTACAC
* * *
4181934 AACTTACATAAGTTTCAT
1 AACTTACATAACTTACAC
*
4181952 AA--TACACAACTTACAC
1 AACTTACATAACTTACAC
*
4181968 AGCTTACATAACTTACAC
1 AACTTACATAACTTACAC
4181986 AACTTACATAACTTACA
1 AACTTACATAACTTACA
4182003 TTAATATTAT
Statistics
Matches: 128, Mismatches: 29, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
16 70 0.55
18 58 0.45
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.30
Consensus pattern (18 bp):
AACTTACATAACTTACAC
Found at i:4182026 original size:31 final size:31
Alignment explanation
Indices: 4181989--4182354 Score: 406
Period size: 31 Copynumber: 12.5 Consensus size: 31
4181979 CTTACACAAC
4181989 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
4182020 TTACATAACTTACATTAATATTATAC----A
1 TTACATAACTTACATTAATATTATACATAAA
4182047 -T--A-AA-TTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
4182073 TTACATAACTTA-ATTAATTTATATACATAAA
1 TTACATAACTTACATTAATAT-TATACATAAA
* *
4182104 TTACATAACTTACATTAATTTTATACATAAC
1 TTACATAACTTACATTAATATTATACATAAA
4182135 TTACATAACTTA-ATT-A-A-T-TA-AT--A
1 TTACATAACTTACATTAATATTATACATAAA
*
4182158 -TACATAAATTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
4182188 TTACATAACTTA-ATTAATTTATATACATAAA
1 TTACATAACTTACATTAATAT-TATACATAAA
* *
4182219 TTACATAACTTACATTAATTTTATACATAAC
1 TTACATAACTTACATTAATATTATACATAAA
4182250 TTACATAACTTA-ATT-A-A-TATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
4182277 TTACATAACTTACTTTAATGTTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
4182308 TTACATAACTTAGTTAATTAATATTATACATAAC
1 TTACATAACTTA---CATTAATATTATACATAAA
4182342 TTAC--AACTTACAT
1 TTACATAACTTACAT
4182355 AACTTACAAC
Statistics
Matches: 289, Mismatches: 17, Indels: 60
0.79 0.05 0.16
Matches are distributed among these distances:
22 27 0.09
23 5 0.02
24 2 0.01
25 3 0.01
26 5 0.02
27 26 0.09
28 4 0.01
29 6 0.02
30 23 0.08
31 147 0.51
32 22 0.08
34 19 0.07
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTATACATAAA
Found at i:4182046 original size:22 final size:22
Alignment explanation
Indices: 4182021--4182078 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
4182011 ATACATAAAT
*
4182021 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
4182043 TACATAAATTACATTAATATTA
1 TACATAAATTACATTAATATTA
4182065 TACATAAATTACAT
1 TACATAAATTACAT
4182079 AACTTAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (22 bp):
TACATAAATTACATTAATATTA
Found at i:4182055 original size:53 final size:53
Alignment explanation
Indices: 4181990--4182346 Score: 358
Period size: 53 Copynumber: 6.2 Consensus size: 53
4181980 TTACACAACT
*
4181990 TACATAACTTACATTAATATTATACATAAATTACATAACTTACATTAATAT-TA
1 TACATAAATTACATTAATATTATACATAAATTACATAACTTA-ATTAATATATA
*
4182043 TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAATTTATA
1 TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAATATATA
*
4182096 TACATAAATTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAAT-TAATA
1 TACATAAATTAC---A-TTA-A-T-A--TTATACATAAATTACATAACTTAATTAATAT-ATA
*
4182158 TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAATTTATA
1 TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAATATATA
*
4182211 TACATAAATTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAATATACATAA
1 TACATAAATTAC---A-TTA-A-T-A--TTATACATAAATTACATAACTTAATTAATAT--AT--
4182276 A
53 A
* * * *
4182277 TTACATAACTTACTTTAATGTTATACATAAATTACATAACTTAGTTAATTAATATTA
1 -TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAA-T-ATA-TA
*
4182334 TACATAACTTACA
1 TACATAAATTACA
4182347 ACTTACATAA
Statistics
Matches: 263, Mismatches: 12, Indels: 55
0.80 0.04 0.17
Matches are distributed among these distances:
52 7 0.03
53 98 0.37
54 1 0.00
55 1 0.00
56 15 0.06
57 8 0.03
58 32 0.12
59 5 0.02
60 4 0.02
61 2 0.01
62 73 0.28
63 3 0.01
64 2 0.01
66 1 0.00
67 11 0.04
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (53 bp):
TACATAAATTACATTAATATTATACATAAATTACATAACTTAATTAATATATA
Found at i:4182117 original size:115 final size:114
Alignment explanation
Indices: 4181989--4182354 Score: 547
Period size: 115 Copynumber: 3.1 Consensus size: 114
4181979 CTTACACAAC
* *
4181989 TTACATAACTTACATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATTTTATACATAACTTACATAACTTA-ATTAATATTATACATAAATTA
4182054 CATTAATATTATACATAAATTACATAACTTAATTAATTTATATACATAAA
65 CATTAATATTATACATAAATTACATAACTTAATTAATTTATATACATAAA
*
4182104 TTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAATTAATATACATAAATTA
1 TTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAA-TATTATACATAAATTA
4182169 CATTAATATTATACATAAATTACATAACTTAATTAATTTATATACATAAA
65 CATTAATATTATACATAAATTACATAACTTAATTAATTTATATACATAAA
4182219 TTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAATATACATAAATTACATA
1 TTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAATAT---T--A-TACATA
* * * * *
4182284 ACTTACTTTAATGTTATACATAAATTACATAACTTAGTTAATTAATATTATACATAAC
60 AATTACATTAATATTATACATAAATTACATAACTTAATTAATT--TA-TATACATAAA
4182342 TTAC--AACTTACAT
1 TTACATAACTTACAT
4182355 AACTTACAAC
Statistics
Matches: 232, Mismatches: 9, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
114 7 0.03
115 154 0.66
117 1 0.00
119 1 0.00
120 45 0.19
121 9 0.04
122 2 0.01
123 13 0.06
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (114 bp):
TTACATAACTTACATTAATTTTATACATAACTTACATAACTTAATTAATATTATACATAAATTAC
ATTAATATTATACATAAATTACATAACTTAATTAATTTATATACATAAA
Found at i:4182161 original size:22 final size:22
Alignment explanation
Indices: 4182136--4182282 Score: 85
Period size: 22 Copynumber: 6.6 Consensus size: 22
4182126 ATACATAACT
*
4182136 TACATAACTTA-ATTAATTAATA
1 TACATAAATTACATTAA-TAATA
*
4182158 TACATAAATTACATTAATATTA
1 TACATAAATTACATTAATAATA
4182180 TACATAAATTACA-TAACTTAAT-
1 TACATAAATTACATTAA--TAATA
**
4182202 TA-ATTTATATACA-T-A-AAT-
1 TACATAAAT-TACATTAATAATA
* **
4182220 TACATAACTTACATTAATTTTA
1 TACATAAATTACATTAATAATA
*
4182242 TACATAACTTACATAACTTAATTAATA
1 TACATAAATTAC---A-TTAA-TAATA
4182269 TACATAAATTACAT
1 TACATAAATTACAT
4182283 AACTTACTTT
Statistics
Matches: 98, Mismatches: 13, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
18 9 0.09
19 4 0.04
20 1 0.01
21 9 0.09
22 46 0.47
23 9 0.09
24 1 0.01
25 1 0.01
26 4 0.04
27 14 0.14
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (22 bp):
TACATAAATTACATTAATAATA
Found at i:4182355 original size:16 final size:16
Alignment explanation
Indices: 4182334--4182378 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
4182324 ATTAATATTA
4182334 TACATAACTTACAACT
1 TACATAACTTACAACT
4182350 TACATAACTTACAACT
1 TACATAACTTACAACT
4182366 TACATAACTTACA
1 TACATAACTTACA
4182379 TTTTTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.31
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:4182448 original size:25 final size:25
Alignment explanation
Indices: 4182420--4182546 Score: 86
Period size: 25 Copynumber: 5.2 Consensus size: 25
4182410 ACTTAATTTT
4182420 CATAATAAATAACTTACATAACTTA
1 CATAATAAATAACTTACATAACTTA
* * *
4182445 CATAATACATAACTTATATGACTTA
1 CATAATAAATAACTTACATAACTTA
* * *
4182470 CATAACT---T-ACATAGCATAATTTT
1 CATAA-TAAATAACTTA-CATAACTTA
** * * * *
4182493 CATGGTACACAACTTACATAATTTT
1 CATAATAAATAACTTACATAACTTA
4182518 CATAATAAATAACTTACATAA--TA
1 CATAATAAATAACTTACATAACTTA
4182541 CATAAT
1 CATAAT
4182547 TTACATAGCT
Statistics
Matches: 79, Mismatches: 17, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
22 5 0.06
23 16 0.20
25 53 0.67
26 5 0.06
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.35
Consensus pattern (25 bp):
CATAATAAATAACTTACATAACTTA
Found at i:4182453 original size:16 final size:16
Alignment explanation
Indices: 4182434--4182553 Score: 69
Period size: 16 Copynumber: 7.9 Consensus size: 16
4182424 ATAAATAACT
4182434 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
4182450 TACATAACTTATATGACT
1 TACATAACTTACAT-A-A
4182468 TACATAACTTACAT-A
1 TACATAACTTACATAA
* * * **
4182483 -GCATAATTTTCATGG
1 TACATAACTTACATAA
*
4182498 TACACAACTTACATAA
1 TACATAACTTACATAA
4182514 T---T---TT-CATAA
1 TACATAACTTACATAA
*
4182523 TAAATAACTTACATAA
1 TACATAACTTACATAA
*
4182539 TACATAATTTACATA
1 TACATAACTTACATA
4182554 GCTTAATTAT
Statistics
Matches: 76, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 10 0.13
15 2 0.03
16 41 0.54
17 1 0.01
18 13 0.17
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:4188018 original size:21 final size:21
Alignment explanation
Indices: 4187983--4188074 Score: 112
Period size: 21 Copynumber: 4.4 Consensus size: 21
4187973 CAGCAGCTTA
* * * *
4187983 AAGCAGATGCAGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
* *
4188004 AAGCAGAGACGGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
4188025 AAGCACAGGCTACAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
4188046 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
4188067 AAGCAGAG
1 AAGCAGAG
4188075 CAGCGTCAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.36, C:0.20, G:0.41, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:4188481 original size:43 final size:43
Alignment explanation
Indices: 4188434--4188548 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
4188424 AGGTGTTGCC
* * *
4188434 CTTTAGTGGCATTTTTGGTCGACGCGCCGCTACAGA-TAGGGGT
1 CTTTAGTGGCGTTTTTGGTCGAAGCGCCGCTAAAGATTA-GGGT
* * * * *
4188477 CTTTAGCGGCGTTTGTGG-GGAAAGCGTCGCTAAAGATTAGGTT
1 CTTTAGTGGCGTTTTTGGTCG-AAGCGCCGCTAAAGATTAGGGT
*
4188520 CTTTAGTGGCGCTTTTGGTCGAAGCGCCG
1 CTTTAGTGGCGTTTTTGGTCGAAGCGCCG
4188549 TGATAGATCA
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
42 1 0.02
43 52 0.93
44 3 0.05
ACGTcount: A:0.17, C:0.19, G:0.34, T:0.30
Consensus pattern (43 bp):
CTTTAGTGGCGTTTTTGGTCGAAGCGCCGCTAAAGATTAGGGT
Found at i:4188537 original size:86 final size:86
Alignment explanation
Indices: 4188434--4188607 Score: 228
Period size: 86 Copynumber: 2.0 Consensus size: 86
4188424 AGGTGTTGCC
* * *
4188434 CTTTAGTGGCATTTTTGGTCGACGCGCCGCT-ACAGAT-AGGGGTCT-TTAGCGGCGTTTGTGGG
1 CTTTAGTGGCACTTTTGGTCGAAGCGCCG-TGACAGATCA-GGGTCTATT-GCGGCGTTTGAGGG
* *
4188496 GAAAGCGTCGCTAAAGATTAGGTT
63 GAAAGCGCCGCTAAAGATCAGGTT
* *
4188520 CTTTAGTGGCGCTTTTGGTCGAAGCGCCGTGATAGATCAGGGTCTATTGCGGCGTTTGAGGGGAA
1 CTTTAGTGGCACTTTTGGTCGAAGCGCCGTGACAGATCAGGGTCTATTGCGGCGTTTGAGGGGAA
*
4188585 AGCGCCGCTATAGATCAGGTT
66 AGCGCCGCTAAAGATCAGGTT
4188606 CT
1 CT
4188608 ATTGCGGCGT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
85 1 0.01
86 73 0.95
87 3 0.04
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (86 bp):
CTTTAGTGGCACTTTTGGTCGAAGCGCCGTGACAGATCAGGGTCTATTGCGGCGTTTGAGGGGAA
AGCGCCGCTAAAGATCAGGTT
Found at i:4188602 original size:43 final size:42
Alignment explanation
Indices: 4188457--4188786 Score: 143
Period size: 43 Copynumber: 7.7 Consensus size: 42
4188447 TTTGGTCGAC
*
4188457 GCGCCGCTACAGAT-AGGGGTCTTTAGCGGCGTTTGTGGGGAAA
1 GCGCCGCTATAGATCA-GGGTCTTTAGCGGCGTTTG-GGGGAAA
* * * * * **
4188500 GCGTCGCTAAAGATTAGGTTCTTTAGTGGCGCTTTTGGTCG-AA
1 GCGCCGCTATAGATCAGGGTCTTTAGCGGCG--TTTGGGGGAAA
4188543 GCGCCG-TGATAGATCAGGGTCTATT-GCGGCGTTTGAGGGGAAA
1 GCGCCGCT-ATAGATCAGGGTCT-TTAGCGGCGTTTG-GGGGAAA
* * ***
4188586 GCGCCGCTATAGATCAGGTTCTATT-GCGGCGTTTAAGAAAAAA
1 GCGCCGCTATAGATCAGGGTCT-TTAGCGGCGTTT-GGGGGAAA
** * * ** * *****
4188629 ATGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTTCCCAAAA
1 GCGCCGCTATAGATCAGGGTCTTTAGCGGCG-TTTGGGGGAAA
* * ****
4188672 ACGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTT-TCCTAAA
1 GCGCCGCTATAGATCAGGGTCTTTAGCGGCG-TTTGGGGGAAA
* * *** *
4188714 GCGCCGCTAAAGGTCTTAGTCTTCAGCGGCGTTTGTGGGAGAAA
1 GCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTG-GGG-GAAA
* *
4188758 -CGCCGCTAAAGATCAGGCTCTTTAGCGGC
1 GCGCCGCTATAGATCAGGGTCTTTAGCGGC
4188787 ATTTTTTTCT
Statistics
Matches: 221, Mismatches: 52, Indels: 28
0.73 0.17 0.09
Matches are distributed among these distances:
41 7 0.03
42 35 0.16
43 163 0.74
44 12 0.05
45 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (42 bp):
GCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTGGGGGAAA
Found at i:4188736 original size:42 final size:43
Alignment explanation
Indices: 4188625--4188812 Score: 143
Period size: 43 Copynumber: 4.4 Consensus size: 43
4188615 CGTTTAAGAA
* * *
4188625 AAAAATGCCGCTAAAGACCCTGA-TCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTAAAGA-TCAGAGTCTTTAGCGGCGCTTTTCCC
*
4188668 AAAAACGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTT-CC
1 AAAAACGCCGCTAAAGATCAGAGTCTTTAGCGGCGCTTTTCCC
* * * ** * ***
4188710 TAAAGCGCCGCTAAAGGTCTTAGTCTTCAGCGGCG-TTTGTGGG
1 AAAAACGCCGCTAAAGATCAGAGTCTTTAGCGGCGCTTT-TCCC
* ** *
4188753 AGAAACGCCGCTAAAGATCAG-GCTCTTTAGCGGCATTTTTTTCTC
1 AAAAACGCCGCTAAAGATCAGAG-TCTTTAGCGGC--GCTTTTCCC
4188798 -AAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
4188813 TTAGCGGCGC
Statistics
Matches: 113, Mismatches: 25, Indels: 13
0.75 0.17 0.09
Matches are distributed among these distances:
41 3 0.03
42 34 0.30
43 58 0.51
44 14 0.12
45 1 0.01
46 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCAGAGTCTTTAGCGGCGCTTTTCCC
Found at i:4190454 original size:64 final size:60
Alignment explanation
Indices: 4190328--4190445 Score: 146
Period size: 64 Copynumber: 1.9 Consensus size: 60
4190318 TATTGTCCTA
* * * *
4190328 TTTCTTTTTTGATCACCCAACTATCTTTTTTTTTAATTTGGTCATCTAACTATTGCACAT
1 TTTCTTTGTTGATCACCCAACTATCTTTTTTTTTAATTTGGTCACCCAACTAATGCACAT
* *
4190388 TTTCTTTGTTGGTCACCCAACTATCAAATTTTTTTTTTAATTTGGTCACCCAATTAAT
1 TTTCTTTGTTGATCACCCAACTATC----TTTTTTTTTAATTTGGTCACCCAACTAAT
4190446 CAAGATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
60 23 0.48
64 25 0.52
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (60 bp):
TTTCTTTGTTGATCACCCAACTATCTTTTTTTTTAATTTGGTCACCCAACTAATGCACAT
Found at i:4198376 original size:14 final size:15
Alignment explanation
Indices: 4198354--4198430 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
4198344 CAATCAAACA
4198354 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
4198368 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
4198383 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
4198403 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
4198417 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
4198431 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:4198395 original size:20 final size:20
Alignment explanation
Indices: 4198370--4198409 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4198360 AATATTTTCC
*
4198370 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
4198390 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
4198410 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:4198415 original size:34 final size:35
Alignment explanation
Indices: 4198358--4198424 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
4198348 CAAACACCAG
*
4198358 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
4198393 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
4198425 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:4199029 original size:24 final size:24
Alignment explanation
Indices: 4198999--4199046 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
4198989 AGACCCTTTC
4198999 ATATGAAATACTGAAAAAAA-AAAT
1 ATATGAAATACT-AAAAAAATAAAT
4199023 ATATGAAATACTAAAAAAATAAAT
1 ATATGAAATACTAAAAAAATAAAT
4199047 TTATCAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (24 bp):
ATATGAAATACTAAAAAAATAAAT
Found at i:4202014 original size:19 final size:17
Alignment explanation
Indices: 4201978--4202016 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
4201968 TTAGTAATAC
4201978 ATATTTTATATTATAAA
1 ATATTTTATATTATAAA
*
4201995 ATATTGTTATTTTAATAAA
1 ATATT-TTATATT-ATAAA
4202014 ATA
1 ATA
4202017 AATACAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATTTTATATTATAAA
Found at i:4207534 original size:18 final size:18
Alignment explanation
Indices: 4207511--4207546 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4207501 CCTACCTTAC
4207511 TACCTCAGTATAAAGAAG
1 TACCTCAGTATAAAGAAG
*
4207529 TACCTCAGTCTAAAGAAG
1 TACCTCAGTATAAAGAAG
4207547 AAGCTGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (18 bp):
TACCTCAGTATAAAGAAG
Found at i:4209285 original size:23 final size:24
Alignment explanation
Indices: 4209255--4209300 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
4209245 ATAATATATA
*
4209255 AAATAATTTCATATT-AAATATTT
1 AAATAATTCCATATTAAAATATTT
*
4209278 AAATAATTCCATTTTAAAATATT
1 AAATAATTCCATATTAAAATATT
4209301 AATTCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (24 bp):
AAATAATTCCATATTAAAATATTT
Found at i:4209302 original size:23 final size:23
Alignment explanation
Indices: 4209241--4209302 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
4209231 GATGTACATG
* * *
4209241 ATTTATAATATATAAAATAATTTC
1 ATTT-TAAAATATTAAATAATTCC
*
4209265 ATATT-AAATATTTAAATAATTCC
1 ATTTTAAAATA-TTAAATAATTCC
4209288 ATTTTAAAATATTAA
1 ATTTTAAAATATTAA
4209303 TTCATTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 4 0.13
23 19 0.61
24 8 0.26
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTTAAAATATTAAATAATTCC
Found at i:4209305 original size:19 final size:19
Alignment explanation
Indices: 4209281--4209319 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
4209271 AATATTTAAA
4209281 TAATTCCATTT-TAAAATAT
1 TAATT-CATTTATAAAATAT
4209300 TAATTCATTTAATAAAATAT
1 TAATTCATTT-ATAAAATAT
4209320 GACTATACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (19 bp):
TAATTCATTTATAAAATAT
Found at i:4210774 original size:4 final size:4
Alignment explanation
Indices: 4210733--4210791 Score: 57
Period size: 4 Copynumber: 14.2 Consensus size: 4
4210723 ATTTGTAATA
* * *
4210733 AAAT ACAT AAAT AGAT -AAT GATAAT ATAT AAAT AAAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT -A-AAT AAAT AAAT -AAAT AAAT AAAT AAAT
4210783 AAAT AAAT A
1 AAAT AAAT A
4210792 GATGCCCGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 2 0.04
4 35 0.78
5 5 0.11
6 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:4212921 original size:18 final size:18
Alignment explanation
Indices: 4212898--4212939 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4212888 CCTGTAATTT
4212898 TTAAATTATTAAATATAA
1 TTAAATTATTAAATATAA
** *
4212916 TTAAATTATTTTATTTAA
1 TTAAATTATTAAATATAA
4212934 TTAAAT
1 TTAAAT
4212940 CACTTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTAAATTATTAAATATAA
Found at i:4214783 original size:9 final size:9
Alignment explanation
Indices: 4214771--4214855 Score: 66
Period size: 9 Copynumber: 9.2 Consensus size: 9
4214761 TTTTTTTTAC
4214771 TTTTAAAAT
1 TTTTAAAAT
*
4214780 TTTT-AATT
1 TTTTAAAAT
*
4214788 TTTTATAAT
1 TTTTAAAAT
** *
4214797 TTATATTTACT
1 TT-T-TAAAAT
4214808 TTTTAAAA-
1 TTTTAAAAT
4214816 TTTTAAGAAT
1 TTTTAA-AAT
4214826 TTTTAAATAT
1 TTTTAAA-AT
*
4214836 TTTTACAAT
1 TTTTAAAAT
4214845 TTTTAAAAT
1 TTTTAAAAT
4214854 TT
1 TT
4214856 AGACTAAAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 13 0.22
9 25 0.42
10 16 0.27
11 6 0.10
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:4214829 original size:19 final size:18
Alignment explanation
Indices: 4214807--4214855 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 18
4214797 TTATATTTAC
*
4214807 TTTTTAAAATTTTAAGAA
1 TTTTTAAAATTTTAACAA
*
4214825 TTTTTAAATATTTTTACAA
1 TTTTTAAA-ATTTTAACAA
4214844 TTTTTAAAATTT
1 TTTTTAAAATTT
4214856 AGACTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTTAAAATTTTAACAA
Found at i:4215279 original size:19 final size:18
Alignment explanation
Indices: 4215246--4215281 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4215236 TTAATTCAAA
*
4215246 ATTTATTAAGAAAAAAAT
1 ATTTAATAAGAAAAAAAT
4215264 ATTTAATAATGAAAAAAA
1 ATTTAATAA-GAAAAAAA
4215282 GAAAAGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
ATTTAATAAGAAAAAAAT
Found at i:4215360 original size:23 final size:24
Alignment explanation
Indices: 4215307--4215361 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
4215297 AAAAAAATTG
4215307 TAATAAT-AAAAAATATTTTTTTA
1 TAATAATAAAAAAATATTTTTTTA
*
4215330 TAAAAATAAGAAAAATATTTTTTTAA
1 TAATAATAA-AAAAATATTTTTTT-A
4215356 TAATAA
1 TAATAA
4215362 AACACAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 6 0.22
24 1 0.04
25 14 0.52
26 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
TAATAATAAAAAAATATTTTTTTA
Found at i:4221840 original size:42 final size:42
Alignment explanation
Indices: 4221779--4222172 Score: 495
Period size: 43 Copynumber: 9.2 Consensus size: 42
4221769 GCAAATTTTT
*
4221779 GCGGCGCTTACAGAAAAAAATGCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTT--AGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* *
4221823 GCGGCCCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * * *
4221865 GCGGCGCTAAAAAAATAAACGCCACTAAAGACCATCTTTTTTA
1 GCGGCGCTTAGAAAA-AAACGCCACTAAAGATCATGTTCTTTA
* *
4221908 GCGGCGC-TAAAAAATAAACGCCACTAAAGACCATGTTCTTTA
1 GCGGCGCTTAGAAAA-AAACGCCACTAAAGATCATGTTCTTTA
* *
4221950 GCGGCGCTTTAGAAATAAACGCCACTAAAGAGCATGTTCTTTA
1 GCGGCGC-TTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
*
4221993 GCGGCGCTTAGAAATAAACGCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
4222035 GCGGCGCTAAGGAAATAAACGCCGCTAAAGATCATGTTATTTA
1 GCGGCGCTTA-GAAAAAAACGCCACTAAAGATCATGTTCTTTA
*
4222078 GCGGCGCTTAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTT-AGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
4222121 GCGGCGCTTTGAAAGAAAACGCCTCTAAA-AGTAATGTTCTATA
1 GCGGCGCTTAGAAA-AAAACGCCACTAAAGA-TCATGTTCTTTA
4222164 GCGGCGCTT
1 GCGGCGCTT
4222173 GTTTAAAAAC
Statistics
Matches: 316, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
42 130 0.41
43 172 0.54
44 14 0.04
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (42 bp):
GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
Found at i:4221908 original size:85 final size:85
Alignment explanation
Indices: 4221792--4222172 Score: 482
Period size: 85 Copynumber: 4.5 Consensus size: 85
4221782 GCGCTTACAG
* * *
4221792 AAAA-AAATGCCACTAAAGATCATGTTCTTTAGCGGCCCTTAGAAAAAAACGCCGCTAAAGATCA
1 AAAATAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGATCA
4221856 TGTTCTTTAGCGGCGCTAAA
66 TGTTCTTTAGCGGCGCTAAA
* * * * *
4221876 AAAATAAACGCCACTAAAGACCATCTTTTTTAGCGGCGC-TAAAAAATAAACGCCACTAAAGACC
1 AAAATAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAA-AAACGCCACTAAAGATC
**
4221940 ATGTTCTTTAGCGGCGCTTTA
65 ATGTTCTTTAGCGGCGCTAAA
* * *
4221961 GAAATAAACGCCACTAAAGAGCATGTTCTTTAGCGGCGCTTAGAAATAAACGCCACTAAAGATCA
1 AAAATAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGATCA
*
4222026 TGTTCTTTAGCGGCGCTAAG
66 TGTTCTTTAGCGGCGCTAAA
* * * *
4222046 GAAATAAACGCCGCTAAAGATCATGTTATTTAGCGGCGCTTAAGAAAAAAACGCCGCTAAAGATC
1 AAAATAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTT-AGAAAAAAACGCCACTAAAGATC
**
4222111 ATGTTCTTTAGCGGCGCTTTGA
65 ATGTTCTTTAGCGGCGC-TAAA
* * * *
4222133 AAGA-AAACGCCTCTAAA-AGTAATGTTCTATAGCGGCGCTT
1 AAAATAAACGCCACTAAAGA-TCATGTTCTTTAGCGGCGCTT
4222173 GTTTAAAAAC
Statistics
Matches: 257, Mismatches: 34, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
84 10 0.04
85 171 0.67
86 73 0.28
87 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (85 bp):
AAAATAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGATCA
TGTTCTTTAGCGGCGCTAAA
Found at i:4222654 original size:12 final size:12
Alignment explanation
Indices: 4222637--4222696 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
4222627 TTTTGAACCT
*
4222637 CTGCTTCTATCG
1 CTGCTTCTCTCG
4222649 CTGCTTCTCTCG
1 CTGCTTCTCTCG
4222661 CTGCTTCTCTCG
1 CTGCTTCTCTCG
**
4222673 CTGCGGC-CT--
1 CTGCTTCTCTCG
4222682 CTGCTTCTCTCG
1 CTGCTTCTCTCG
4222694 CTG
1 CTG
4222697 TGGCCTCTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 5 0.12
10 2 0.05
11 2 0.05
12 31 0.77
ACGTcount: A:0.02, C:0.40, G:0.20, T:0.38
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:4222687 original size:21 final size:21
Alignment explanation
Indices: 4222634--4222708 Score: 87
Period size: 21 Copynumber: 3.4 Consensus size: 21
4222624 TTCTTTTGAA
* **
4222634 CCTCTGCTTCTATCGCTGCTT
1 CCTCTGCTTCTCTCGCTGCGG
4222655 CTCTCGCTGCTTCTCTCGCTGCGG
1 C-CT--CTGCTTCTCTCGCTGCGG
*
4222679 CCTCTGCTTCTCTCGCTGTGG
1 CCTCTGCTTCTCTCGCTGCGG
4222700 CCTCTGCTT
1 CCTCTGCTT
4222709 TAAGTTGTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 27 0.57
22 2 0.04
23 2 0.04
24 16 0.34
ACGTcount: A:0.01, C:0.40, G:0.20, T:0.39
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCGG
Found at i:4226675 original size:9 final size:9
Alignment explanation
Indices: 4226663--4226948 Score: 136
Period size: 9 Copynumber: 33.0 Consensus size: 9
4226653 AAGATATACA
*
4226663 TTATATAAG
1 TTATGTAAG
4226672 TTATGTAAG
1 TTATGTAAG
4226681 TTATGTAAG
1 TTATGTAAG
4226690 TTATGTAAG
1 TTATGTAAG
*
4226699 TTGTGTAAG
1 TTATGTAAG
**
4226708 TTGCGTAAG
1 TTATGTAAG
* *
4226717 ATGTGT-A-
1 TTATGTAAG
* *
4226724 TTATGAAAC
1 TTATGTAAG
4226733 TTATGTAAG
1 TTATGTAAG
*
4226742 TTATGT--C
1 TTATGTAAG
4226749 TTATGTAAG
1 TTATGTAAG
*
4226758 TTATGTAAA
1 TTATGTAAG
4226767 TTATGT-A-
1 TTATGTAAG
*
4226774 TTATTTACA-
1 TTATGTA-AG
*
4226783 -CATGTAAG
1 TTATGTAAG
*
4226791 TTATGT--C
1 TTATGTAAG
4226798 TTATGTAAG
1 TTATGTAAG
**
4226807 TTGCGTAAG
1 TTATGTAAG
*
4226816 TTGTGT-A-
1 TTATGTAAG
*
4226823 TTATGAAAG
1 TTATGTAAG
**
4226832 TTA--TATC
1 TTATGTAAG
4226839 TTATGTAAG
1 TTATGTAAG
*
4226848 TTATGTAGG
1 TTATGTAAG
*
4226857 GTATGTATTA-
1 TTATGTA--AG
*
4226867 TTATGTAAC
1 TTATGTAAG
* *
4226876 TTATTTAAT
1 TTATGTAAG
*
4226885 TTATGTAGG
1 TTATGTAAG
*
4226894 GTATGTATTA-
1 TTATGTA--AG
*
4226904 TTATGTAAC
1 TTATGTAAG
* *
4226913 TTATTTAAT
1 TTATGTAAG
*
4226922 TTATGTAGG
1 TTATGTAAG
*
4226931 GTATGTAAG
1 TTATGTAAG
4226940 TTATGTAAG
1 TTATGTAAG
4226949 CTCTGTATTA
Statistics
Matches: 208, Mismatches: 49, Indels: 40
0.70 0.16 0.13
Matches are distributed among these distances:
7 29 0.14
8 11 0.05
9 156 0.75
10 12 0.06
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4226751 original size:16 final size:16
Alignment explanation
Indices: 4226732--4226853 Score: 82
Period size: 16 Copynumber: 8.0 Consensus size: 16
4226722 TATTATGAAA
4226732 CTTATGTAAGTTATGT
1 CTTATGTAAGTTATGT
4226748 CTTATGTAAGTTATGT
1 CTTATGTAAGTTATGT
* *
4226764 AAATTATGT-A-TTATTT
1 --CTTATGTAAGTTATGT
**
4226780 ACACATGTAAGTTATGT
1 -CTTATGTAAGTTATGT
4226797 CTTATGTAAG-T-TG-
1 CTTATGTAAGTTATGT
*
4226810 C----GTAAGTTGTGT
1 CTTATGTAAGTTATGT
* * *
4226822 ATTATGAAAGTTATAT
1 CTTATGTAAGTTATGT
4226838 CTTATGTAAGTTATGT
1 CTTATGTAAGTTATGT
4226854 AGGGTATGTA
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
9 5 0.06
10 1 0.01
11 2 0.03
13 1 0.01
14 2 0.03
15 6 0.08
16 51 0.64
17 6 0.08
18 6 0.08
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.47
Consensus pattern (16 bp):
CTTATGTAAGTTATGT
Found at i:4226832 original size:25 final size:25
Alignment explanation
Indices: 4226672--4226834 Score: 96
Period size: 25 Copynumber: 6.5 Consensus size: 25
4226662 ATTATATAAG
* *
4226672 TTATGTAAGTTATGTAAGTTATGTAA
1 TTATGAAAGTTACGTAAGTTATGT-A
* * * * *
4226698 GTTGTGTAAGTTGCGTAAGATGTGTA
1 -TTATGAAAGTTACGTAAGTTATGTA
* * *
4226724 TTATGAAACTTATGTAAGTTATGTC
1 TTATGAAAGTTACGTAAGTTATGTA
* * *
4226749 TTATGTAAGTTATGTAAATTATGTA
1 TTATGAAAGTTACGTAAGTTATGTA
* * * * *
4226774 TTATTTACA--CATGTAAGTTATGTC
1 TTA-TGAAAGTTACGTAAGTTATGTA
* * *
4226798 TTATGTAAGTTGCGTAAGTTGTGTA
1 TTATGAAAGTTACGTAAGTTATGTA
4226823 TTATGAAAGTTA
1 TTATGAAAGTTA
4226835 TATCTTATGT
Statistics
Matches: 100, Mismatches: 33, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
23 2 0.02
24 15 0.15
25 61 0.61
26 3 0.03
27 19 0.19
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (25 bp):
TTATGAAAGTTACGTAAGTTATGTA
Found at i:4226889 original size:37 final size:37
Alignment explanation
Indices: 4226838--4226937 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
4226828 AAAGTTATAT
* *
4226838 CTTATGTAAGTTATGTAGGGTATGTATTATTATGTAA
1 CTTATTTAATTTATGTAGGGTATGTATTATTATGTAA
4226875 CTTATTTAATTTATGTAGGGTATGTATTATTATGTAA
1 CTTATTTAATTTATGTAGGGTATGTATTATTATGTAA
4226912 CTTATTTAATTTATGTAGGGTATGTA
1 CTTATTTAATTTATGTAGGGTATGTA
4226938 AGTTATGTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.29, C:0.03, G:0.19, T:0.49
Consensus pattern (37 bp):
CTTATTTAATTTATGTAGGGTATGTATTATTATGTAA
Found at i:4226891 original size:46 final size:43
Alignment explanation
Indices: 4226821--4226929 Score: 113
Period size: 37 Copynumber: 2.6 Consensus size: 43
4226811 GTAAGTTGTG
* * * *
4226821 TATTATGAAAGTTATATCTTATGTAAGTTATGTAGGGTATGTAT
1 TATTATGTAACTTATTTATTATGT-AGTTATGTAGGGTATGTAT
4226865 TATTATGTAACTTATTTA--A--T--TTATGTAGGGTATGTAT
1 TATTATGTAACTTATTTATTATGTAGTTATGTAGGGTATGTAT
4226902 TATTATGTAACTTATTTAATTTATGTAG
1 TATTATGTAACTTATTT-A-TTATGTAG
4226930 GGTATGTAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
37 34 0.64
38 1 0.02
40 1 0.02
41 1 0.02
42 1 0.02
43 1 0.02
44 14 0.26
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.50
Consensus pattern (43 bp):
TATTATGTAACTTATTTATTATGTAGTTATGTAGGGTATGTAT
Found at i:4227117 original size:51 final size:51
Alignment explanation
Indices: 4227061--4227214 Score: 159
Period size: 51 Copynumber: 3.2 Consensus size: 51
4227051 ATAAATTTAT
*
4227061 TATTAATAAAATTTAAATATAGCTTACATACGTAAATGAATATATGTATAA
1 TATTAAAAAAATTTAAATATAGCTTACATACGTAAATGAATATATGTATAA
* ** * *
4227112 TATTAAAAAAATAGT-AA-A-A-CTTATTTAAGT-TAT-AA-AT-T-TAT--
1 TATTAAAAAAAT-TTAAATATAGCTTACATACGTAAATGAATATATGTATAA
*
4227153 TATTAATAAAATTTAAATATAGCTTACATACGTAAATGAATATATGTATAA
1 TATTAAAAAAATTTAAATATAGCTTACATACGTAAATGAATATATGTATAA
4227204 TATTAAAAAAA
1 TATTAAAAAAA
4227215 ATAGTAATAC
Statistics
Matches: 78, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
40 1 0.01
41 13 0.17
42 1 0.01
43 4 0.05
44 9 0.12
45 4 0.05
46 4 0.05
47 4 0.05
48 9 0.12
49 4 0.05
50 1 0.01
51 23 0.29
52 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (51 bp):
TATTAAAAAAATTTAAATATAGCTTACATACGTAAATGAATATATGTATAA
Found at i:4227168 original size:92 final size:92
Alignment explanation
Indices: 4227009--4227244 Score: 436
Period size: 92 Copynumber: 2.5 Consensus size: 92
4226999 TTATGTAGGG
4227009 TATGTATAATATTAAAAAAATAGTAATATACTTATTTAAGTTATAAATTTATTATTAATAAAATT
1 TATGTATAATATTAAAAAAATAGTAA-A-ACTTATTTAAGTTATAAATTTATTATTAATAAAATT
4227074 TAAATATAGCTTACATACGTAAATGAATA
64 TAAATATAGCTTACATACGTAAATGAATA
4227103 TATGTATAATATTAAAAAAATAGTAAAACTTATTTAAGTTATAAATTTATTATTAATAAAATTTA
1 TATGTATAATATTAAAAAAATAGTAAAACTTATTTAAGTTATAAATTTATTATTAATAAAATTTA
4227168 AATATAGCTTACATACGTAAATGAATA
66 AATATAGCTTACATACGTAAATGAATA
*
4227195 TATGTATAATATTAAAAAAAATAGTAATACTTATTTAAGTTATAAATTTA
1 TATGTATAATATT-AAAAAAATAGTAAAACTTATTTAAGTTATAAATTTA
4227245 AACTTAAAAA
Statistics
Matches: 140, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
92 78 0.56
93 36 0.26
94 26 0.19
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (92 bp):
TATGTATAATATTAAAAAAATAGTAAAACTTATTTAAGTTATAAATTTATTATTAATAAAATTTA
AATATAGCTTACATACGTAAATGAATA
Found at i:4228469 original size:52 final size:52
Alignment explanation
Indices: 4228407--4228505 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
4228397 GGTTATGAAA
* *
4228407 ATTATTACCTAAAAATGTTCTTACTTTCTTAACCCTAATTTGAATTTACCGT
1 ATTAATACCTAAAAATGATCTTACTTTCTTAACCCTAATTTGAATTTACCGT
*
4228459 ATTAATACCTAAAAATGATCTTACTTTCTTAACCCTAGTTTGAATTT
1 ATTAATACCTAAAAATGATCTTACTTTCTTAACCCTAATTTGAATTT
4228506 TCTTATTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.43
Consensus pattern (52 bp):
ATTAATACCTAAAAATGATCTTACTTTCTTAACCCTAATTTGAATTTACCGT
Found at i:4228495 original size:26 final size:26
Alignment explanation
Indices: 4228414--4228495 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 26
4228404 AAAATTATTA
*
4228414 CCTAAAAATGTTCTTACTTTCTTAAC
1 CCTAAAAATGATCTTACTTTCTTAAC
** ** * *
4228440 CCT-AATTTGAAT-TTACCGTATTAATA
1 CCTAAAAATG-ATCTTACTTTCTTAA-C
4228466 CCTAAAAATGATCTTACTTTCTTAAC
1 CCTAAAAATGATCTTACTTTCTTAAC
4228492 CCTA
1 CCTA
4228496 GTTTGAATTT
Statistics
Matches: 39, Mismatches: 13, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
25 13 0.33
26 13 0.33
27 13 0.33
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (26 bp):
CCTAAAAATGATCTTACTTTCTTAAC
Found at i:4230386 original size:15 final size:15
Alignment explanation
Indices: 4230340--4230388 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
4230330 CCCCAGCACT
*
4230340 TAAACCC-TAAACCA
1 TAAACCCATAATCCA
*
4230354 TAAA-ACATAAT-CA
1 TAAACCCATAATCCA
4230367 CTAAACCCATAATCCA
1 -TAAACCCATAATCCA
4230383 TAAACC
1 TAAACC
4230389 TTAAATTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 3 0.11
14 11 0.39
15 12 0.43
16 2 0.07
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:4230421 original size:14 final size:14
Alignment explanation
Indices: 4230404--4230450 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
4230394 TTGTAACTCT
*
4230404 TAAATCTTAAACCA
1 TAAACCTTAAACCA
*
4230418 TAAACCTTAAAGCA
1 TAAACCTTAAACCA
* *
4230432 TAACCCTTAAACCC
1 TAAACCTTAAACCA
4230446 TAAAC
1 TAAAC
4230451 TGTAAAACCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:4230535 original size:31 final size:32
Alignment explanation
Indices: 4230473--4230535 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
4230463 CCCTAAATAT
*
4230473 ATCCCCATAACCCCTTAAAGCATAACCCCTAA
1 ATCCCCATAACCCCTTAAAGCATAACACCTAA
*
4230505 ATCCCCCTAACCCC-T-AAGTCATAACACCTAA
1 ATCCCCATAACCCCTTAAAG-CATAACACCTAA
4230536 CCCTTAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 12 0.43
32 13 0.46
ACGTcount: A:0.37, C:0.41, G:0.03, T:0.19
Consensus pattern (32 bp):
ATCCCCATAACCCCTTAAAGCATAACACCTAA
Found at i:4231317 original size:20 final size:21
Alignment explanation
Indices: 4231268--4231317 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
4231258 TGCAGTGCTA
* *
4231268 ATAAAAAAATTCTTAATAATT
1 ATAAAAAAATTCGTAAAAATT
*
4231289 ATTAAAAAATT-GTAAAAATT
1 ATAAAAAAATTCGTAAAAATT
4231309 ATAAAAAAA
1 ATAAAAAAA
4231318 AGTAATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAAAAAAATTCGTAAAAATT
Found at i:4231322 original size:19 final size:20
Alignment explanation
Indices: 4231285--4231322 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
4231275 AATTCTTAAT
**
4231285 AATTATTAAAAAATTGTAAA
1 AATTATTAAAAAAAAGTAAA
4231305 AATTA-TAAAAAAAAGTAA
1 AATTATTAAAAAAAAGTAA
4231323 TATATCATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
AATTATTAAAAAAAAGTAAA
Found at i:4232651 original size:16 final size:17
Alignment explanation
Indices: 4232630--4232663 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4232620 ACATAATTAT
*
4232630 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
4232646 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
4232663 T
1 T
4232664 TAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:4233588 original size:42 final size:42
Alignment explanation
Indices: 4233532--4233631 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
4233522 CTAAATGAAC
*
4233532 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAATG
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACG
* *
4233574 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGTATAACG
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACG
4233616 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
4233632 TACCGAGAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACG
Found at i:4237117 original size:17 final size:18
Alignment explanation
Indices: 4237095--4237128 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4237085 TTTAATTTAA
4237095 AATTTAATAA-GAAAAAT
1 AATTTAATAATGAAAAAT
*
4237112 AATTTATTAATGAAAAA
1 AATTTAATAATGAAAAA
4237129 GGAAATGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
AATTTAATAATGAAAAAT
Found at i:4240080 original size:3 final size:3
Alignment explanation
Indices: 4240074--4240099 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4240064 AAGCTTTATT
4240074 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
4240100 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:4240104 original size:3 final size:3
Alignment explanation
Indices: 4240098--4240145 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
4240088 AATAATAATA
4240098 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4240146 GTTGTTGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4240647 original size:87 final size:87
Alignment explanation
Indices: 4240544--4240719 Score: 309
Period size: 87 Copynumber: 2.0 Consensus size: 87
4240534 AAAAAAAAGG
4240544 TTAAATAATATTAAAATACATATAAAAACAACAAAAAATTTA-TTTTTTAAGTATTAATTAATGT
1 TTAAATAATATTAAAATACATATAAAAACAA-AAAAAATTTATTTTTTTAAGTATTAATTAATGT
4240608 GAATATGTTATTATCAATTCTTT
65 GAATATGTTATTATCAATTCTTT
* * *
4240631 TTAAATAATATTAAAATACATATAAAAACAAACAAATTTTATTTTTTTAAGTATTAATTTATGTG
1 TTAAATAATATTAAAATACATATAAAAACAAAAAAAATTTATTTTTTTAAGTATTAATTAATGTG
4240696 AATATGTTATTATCAATTCTTT
66 AATATGTTATTATCAATTCTTT
4240718 TT
1 TT
4240720 TTTTATTAAT
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
86 8 0.09
87 77 0.91
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.45
Consensus pattern (87 bp):
TTAAATAATATTAAAATACATATAAAAACAAAAAAAATTTATTTTTTTAAGTATTAATTAATGTG
AATATGTTATTATCAATTCTTT
Found at i:4248527 original size:19 final size:18
Alignment explanation
Indices: 4248505--4248590 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 18
4248495 ATTTTTTTAC
**
4248505 TTTTAAAATTTTTAATTTT
1 TTTTAAAATTTTT-ATAAT
* *
4248524 TTTTATAATTTATATTTAAT
1 TTTTAAAATTT-T-TATAAT
* *
4248544 TTTTAAAATTTTAAGAAT
1 TTTTAAAATTTTTATAAT
4248562 TTTTAAATATTTTTATAAT
1 TTTTAAA-ATTTTTATAAT
4248581 TTTTAAAATT
1 TTTTAAAATT
4248591 CAGACTAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
18 13 0.24
19 27 0.50
20 13 0.24
21 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (18 bp):
TTTTAAAATTTTTATAAT
Found at i:4248555 original size:9 final size:9
Alignment explanation
Indices: 4248541--4248590 Score: 66
Period size: 9 Copynumber: 5.4 Consensus size: 9
4248531 ATTTATATTT
4248541 AATTTTTAA
1 AATTTTTAA
4248550 AA-TTTTAA
1 AATTTTTAA
4248558 GAATTTTTAA
1 -AATTTTTAA
*
4248568 ATATTTTTAT
1 A-ATTTTTAA
4248578 AATTTTTAA
1 AATTTTTAA
4248587 AATT
1 AATT
4248591 CAGACTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
8 6 0.17
9 16 0.44
10 14 0.39
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
AATTTTTAA
Found at i:4252073 original size:29 final size:30
Alignment explanation
Indices: 4252032--4252094 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
4252022 AGTTTATATA
*
4252032 TTTATAATTTTTGAAGG-ATTAAATTAAAAT
1 TTTATAATTTTTG-AGGAATTAAAATAAAAT
*
4252062 TTTATAA-TTTTGAGGAATTAAAATATAAT
1 TTTATAATTTTTGAGGAATTAAAATAAAAT
4252091 TTTA
1 TTTA
4252095 CTATTATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 3 0.10
29 20 0.67
30 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (30 bp):
TTTATAATTTTTGAGGAATTAAAATAAAAT
Found at i:4260518 original size:3 final size:3
Alignment explanation
Indices: 4260510--4260547 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
4260500 TCCTAATGCT
4260510 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4260548 GGCCAAGCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4261508 original size:14 final size:16
Alignment explanation
Indices: 4261479--4261512 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
4261469 ATATAAATTT
4261479 TTATAAATATTTTATA
1 TTATAAATATTTTATA
4261495 TTATAAA-A-TTTATA
1 TTATAAATATTTTATA
4261509 TTAT
1 TTAT
4261513 TTTTTACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.56
15 1 0.06
16 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATAAATATTTTATA
Found at i:4263474 original size:29 final size:29
Alignment explanation
Indices: 4263432--4263489 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
4263422 CTTGCCTCTA
4263432 ATGCTTCCCTTACTTCTCCACTTTTTTTT
1 ATGCTTCCCTTACTTCTCCACTTTTTTTT
4263461 ATGCTTCCCTTACTTCTCCACTTTTTTTT
1 ATGCTTCCCTTACTTCTCCACTTTTTTTT
4263490 CCTTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.10, C:0.31, G:0.03, T:0.55
Consensus pattern (29 bp):
ATGCTTCCCTTACTTCTCCACTTTTTTTT
Found at i:4265464 original size:97 final size:97
Alignment explanation
Indices: 4265344--4265545 Score: 250
Period size: 97 Copynumber: 2.1 Consensus size: 97
4265334 TAATACATAC
* * * *
4265344 ATAATAATATATAAAAAGATTGAAACAAACGAAATATA-TAAAGTAGGGTTTTTAAAAGAAA-AT
1 ATAATAATATATAAAAAGATTGAAACAAACAAAATAAATTAAAATAGGGTTCTTAAAA-AAATAT
* *
4265407 -AATTATATATATATATAGGAATAAGTAAAAATAT
65 AAATTATATATATATATA-G-ATAAATAAAAAGAT
* * *
4265441 TTAATAATATATACAAAAG-TTGAAATAAACAAAATAAATTAAAATAGGGTTCTTAAAAAAATCT
1 ATAATAATATATA-AAAAGATTGAAACAAACAAAATAAATTAAAATAGGGTTCTTAAAAAAATAT
*
4265505 AAATTATATATATGTATAGATAAATAAAAAGAT
65 AAATTATATATATATATAGATAAATAAAAAGAT
4265538 ATAATAAT
1 ATAATAAT
4265546 GTATTATATA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
97 50 0.56
98 24 0.27
99 16 0.18
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (97 bp):
ATAATAATATATAAAAAGATTGAAACAAACAAAATAAATTAAAATAGGGTTCTTAAAAAAATATA
AATTATATATATATATAGATAAATAAAAAGAT
Found at i:4265742 original size:12 final size:12
Alignment explanation
Indices: 4265704--4265778 Score: 57
Period size: 12 Copynumber: 6.4 Consensus size: 12
4265694 ATATATAAAC
4265704 TAATAT-AATAA
1 TAATATCAATAA
*
4265715 CAATATCAATAA
1 TAATATCAATAA
* *
4265727 TAATATCAGTAG
1 TAATATCAATAA
* * *
4265739 TAATAACGATGA
1 TAATATCAATAA
4265751 TAATAAT-AATAA
1 TAAT-ATCAATAA
*
4265763 TAA-ATTAATAA
1 TAATATCAATAA
4265774 TAATA
1 TAATA
4265779 ATAATAGATT
Statistics
Matches: 48, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
10 2 0.04
11 13 0.27
12 32 0.67
13 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (12 bp):
TAATATCAATAA
Found at i:4265756 original size:3 final size:3
Alignment explanation
Indices: 4265750--4265798 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
4265740 AATAACGATG
* *
4265750 ATA ATA ATA ATA ATA A-A TTA ATA ATA ATA ATA ATA GATTA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA
4265796 ATA
1 ATA
4265799 TTACTGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 1 0.03
3 34 0.87
4 2 0.05
5 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:4265775 original size:20 final size:20
Alignment explanation
Indices: 4265750--4265798 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
4265740 AATAACGATG
4265750 ATAATAATAATAATAAATTA
1 ATAATAATAATAATAAATTA
*
4265770 ATAATAATAATAATAGATTA
1 ATAATAATAATAATAAATTA
*
4265790 ATGATAATA
1 ATAATAATA
4265799 TTACTGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
ATAATAATAATAATAAATTA
Found at i:4268270 original size:3 final size:3
Alignment explanation
Indices: 4268262--4268332 Score: 58
Period size: 3 Copynumber: 23.3 Consensus size: 3
4268252 TATGTATGGA
* *
4268262 AAT AAT AAT ATT AA- AAT GAT AAT AAT AAT AAAT AAT AACT AAT ACCAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA-T AAT A--AT
*
4268310 AAT -AC AAT AAT -AT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
4268333 GAAAATATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 5 0.09
3 41 0.75
4 6 0.11
5 3 0.05
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4268304 original size:17 final size:17
Alignment explanation
Indices: 4268262--4268330 Score: 59
Period size: 17 Copynumber: 3.8 Consensus size: 17
4268252 TATGTATGGA
*
4268262 AATAATAATATTAAAAT
1 AATAATAATAATAAAAT
*
4268279 GATAATAATAATAAATAAT
1 AATAATAATAAT-AA-AAT
*
4268298 AACTAATACCATAATACAAT
1 AA-TAATA--ATAATAAAAT
4268318 AAT-ATAATAATAA
1 AATAATAATAATAA
4268331 TAGAAAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
16 6 0.14
17 10 0.24
18 5 0.12
19 5 0.12
20 10 0.24
21 1 0.02
22 5 0.12
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.30
Consensus pattern (17 bp):
AATAATAATAATAAAAT
Found at i:4268724 original size:16 final size:17
Alignment explanation
Indices: 4268703--4268735 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4268693 TAAACTCAAT
4268703 TTTAAC-AAAAAAAACA
1 TTTAACTAAAAAAAACA
*
4268719 TTTAACTAAAACAAACA
1 TTTAACTAAAAAAAACA
4268736 AAAAAACACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (17 bp):
TTTAACTAAAAAAAACA
Found at i:4268791 original size:6 final size:6
Alignment explanation
Indices: 4268780--4268805 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
4268770 AGGGTTTCAA
4268780 AACCCC AACCCC AACCCC AACCCC AA
1 AACCCC AACCCC AACCCC AACCCC AA
4268806 AAGCCGCCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (6 bp):
AACCCC
Found at i:4269925 original size:44 final size:43
Alignment explanation
Indices: 4269877--4270059 Score: 181
Period size: 44 Copynumber: 4.1 Consensus size: 43
4269867 TGTTGAATTT
* *
4269877 GATCTGCTTCACCCTAATACATGAAGACAAGATCTGCTTTCTTC
1 GATCTACTTCACCC-AATACATGAAGACAAGATCTGCTATCTTC
* * *
4269921 GATCTACTTCGCCACCAGT--ATGGAAAGACAAGATCTGGTATCTTC
1 GATCTACTTC-AC-CCAATACAT-G-AAGACAAGATCTGCTATCTTC
* *** *
4269966 GATCTACTTCACGCCAGTATGGGAAGACAAGATCTGCTATCTTT
1 GATCTACTTCAC-CCAATACATGAAGACAAGATCTGCTATCTTC
* *
4270010 GATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTTT
1 GATCTACTTCA-CCCAATACATGAAGACAAGATCTGCTATCTTC
4270054 GATCTA
1 GATCTA
4270060 TTCCACTGCT
Statistics
Matches: 116, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.02
44 79 0.68
45 33 0.28
46 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (43 bp):
GATCTACTTCACCCAATACATGAAGACAAGATCTGCTATCTTC
Found at i:4269956 original size:45 final size:44
Alignment explanation
Indices: 4269900--4270059 Score: 189
Period size: 44 Copynumber: 3.6 Consensus size: 44
4269890 CTAATACATG
* *
4269900 AAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGA
1 AAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAGTATGGA
* * *
4269945 AAGACAAGATCTGGTATCTTCGATCTACTTCACGCCAGTATGGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCACACCAGTATGGA
* ** *
4269989 AAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT-G-
1 AAGACAAGATCTGCTATCTTCGATCTACTTCACACCAGT--ATGGA
*
4270033 AAGACAAGATCTGCTATCTTTGATCTA
1 AAGACAAGATCTGCTATCTTCGATCTA
4270060 TTCCACTGCT
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
44 72 0.69
45 30 0.29
46 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (44 bp):
AAGACAAGATCTGCTATCTTCGATCTACTTCACACCAGTATGGA
Found at i:4270323 original size:50 final size:50
Alignment explanation
Indices: 4270264--4270933 Score: 341
Period size: 50 Copynumber: 13.4 Consensus size: 50
4270254 AGGTAAAATT
*
4270264 CGCCGTCGTAGCTTTAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
* * * ** * * * ***
4270314 CACCGTCGTAACTTCAATCTATTCCACTGCACTA-CTAAGGAAGTAAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATC
* * *
4270364 TGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
* ** * * * ** ***
4270414 CGCCGTCGTAGCTTCAATCTGTTCCACTGCACT-GCTAAAGAAGTAAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATC
* * *
4270464 CGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCATATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
* * ** * * * ** *** *
4270514 CGCCATCGTAGCTTCAATCTGTTCCACTACACTA-CTAAAGAAGTAAGATT
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATC
* * * * * *
4270564 CGTCGTTGTGGCTTCAATCTTTTTAATGGCAATATTAGGGAAACTAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
* ** * * * ***
4270614 CGCCGTCGTAGCTTCAATCTGTTCCACTAC-AT-TGCTAAGGAAGTAAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATAT-C-AGGGAAACCAGATC
* * * * * *
4270664 CGTCGTTGTGGCTTCAATCTTTTTAATGGCAATATTAGGGAAACTAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
* * * ** * * * * ** **
4270714 CGCCGTTGTAACTTCAATCTGTTCCACTACACT-GCTA-AAAAAGTAAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATC-AGGGAAA-CCAGATC
* * *
4270764 CACCGTTGT-GACTTCAATCTTTTTATTTGCAATATCAGGGAAACCAGATC
1 CGCCGTCGTAG-CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
** * ** * * * ** ***
4270814 TACCGTCGTAGCTTCAATCTGTTCCACTGCACT-GCTAAAGAAGTAAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATC
* * *
4270864 TGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
1 CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
4270914 CGCCGTCGTAGCTTCAATCT
1 CGCCGTCGTAGCTTCAATCT
4270934 GTTCCACTAC
Statistics
Matches: 425, Mismatches: 177, Indels: 36
0.67 0.28 0.06
Matches are distributed among these distances:
48 1 0.00
49 9 0.02
50 404 0.95
51 10 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (50 bp):
CGCCGTCGTAGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATC
Found at i:4270398 original size:100 final size:100
Alignment explanation
Indices: 4270265--4270964 Score: 1042
Period size: 100 Copynumber: 7.0 Consensus size: 100
4270255 GGTAAAATTC
* * * * *
4270265 GCCGTCGTAGCTTTAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCACCGTCGTAACTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
* * * *
4270330 ATCTATTCCACTGCACTACTAAGGAAGTAAGATCT
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
4270365 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
* *
4270430 ATCTGTTCCACTGCACTGCTAAAGAAGTAAGATCC
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
* *
4270465 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCATATCCGCCATCGTAGCTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
*
4270530 ATCTGTTCCACTACACTACTAAAGAAGTAAGAT-T
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
* * * *
4270564 CGTCGTTGTGGCTTCAATCTTTTTAATGGCAATATTAGGGAAACTAGATCCGCCGTCGTAGCTTC
1 -GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTC
* * *
4270629 AATCTGTTCCACTACATTGCTAAGGAAGTAAGATCC
65 AATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
* * * * * *
4270665 GTCGTTGTGGCTTCAATCTTTTTAATGGCAATATTAGGGAAACTAGATCCGCCGTTGTAACTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
* *
4270730 ATCTGTTCCACTACACTGCTAAAAAAGTAAGATCC
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
* * * **
4270765 ACCGTTGTGACTTCAATCTTTTTATTTGCAATATCAGGGAAACCAGATCTACCGTCGTAGCTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
*
4270830 ATCTGTTCCACTGCACTGCTAAAGAAGTAAGATCT
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
4270865 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
1 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
* * *
4270930 ATCTGTTCCACTACATTGCTAAGGAAGTAAAATCT
66 ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
4270965 ATGGTTTCAC
Statistics
Matches: 546, Mismatches: 52, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
100 546 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (100 bp):
GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCA
ATCTGTTCCACTACACTGCTAAAGAAGTAAGATCT
Found at i:4272230 original size:22 final size:21
Alignment explanation
Indices: 4272191--4272235 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
4272181 TTAGCCTCTC
*
4272191 CATTTTTACTTTTAATTTTTT
1 CATTTTCACTTTTAATTTTTT
*
4272212 CATTTTCATCTTTTTATTTTTT
1 CATTTTCA-CTTTTAATTTTTT
4272234 CA
1 CA
4272236 CATCACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (21 bp):
CATTTTCACTTTTAATTTTTT
Found at i:4275112 original size:19 final size:19
Alignment explanation
Indices: 4275088--4275133 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
4275078 AACGGTGTCT
* *
4275088 AATGCATAT-GATGTAATG
1 AATGCAAATGGATGAAATG
4275106 AAATGCAAATGGATGAAATG
1 -AATGCAAATGGATGAAATG
4275126 AATGCAAA
1 AATGCAAA
4275134 AAAGAGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.24
Consensus pattern (19 bp):
AATGCAAATGGATGAAATG
Found at i:4276432 original size:18 final size:18
Alignment explanation
Indices: 4276389--4276432 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
4276379 ACCCAATCTA
* *
4276389 AACCCAAGTATTCAACCC
1 AACCCAATTACTCAACCC
4276407 AACCCAATTACTCAACCC
1 AACCCAATTACTCAACCC
4276425 AACCCAAT
1 AACCCAAT
4276433 CATAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.16
Consensus pattern (18 bp):
AACCCAATTACTCAACCC
Found at i:4276549 original size:9 final size:9
Alignment explanation
Indices: 4276535--4276602 Score: 84
Period size: 9 Copynumber: 7.6 Consensus size: 9
4276525 GTAGTGATTC
4276535 AATTTGGTT
1 AATTTGGTT
4276544 AATTTGGTT
1 AATTTGGTT
*
4276553 AATTCGGTT
1 AATTTGGTT
*
4276562 AATTCAGG-T
1 AATT-TGGTT
*
4276571 AATTCGGTT
1 AATTTGGTT
4276580 AATTTGGTT
1 AATTTGGTT
*
4276589 AATTCGGTT
1 AATTTGGTT
4276598 AATTT
1 AATTT
4276603 TTAACCAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
8 2 0.04
9 47 0.92
10 2 0.04
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.49
Consensus pattern (9 bp):
AATTTGGTT
Found at i:4276561 original size:18 final size:18
Alignment explanation
Indices: 4276535--4276602 Score: 102
Period size: 18 Copynumber: 3.8 Consensus size: 18
4276525 GTAGTGATTC
*
4276535 AATTTGGTTAATTTGGTT
1 AATTCGGTTAATTTGGTT
*
4276553 AATTCGGTTAATTCAGG-T
1 AATTCGGTTAATT-TGGTT
4276571 AATTCGGTTAATTTGGTT
1 AATTCGGTTAATTTGGTT
4276589 AATTCGGTTAATTT
1 AATTCGGTTAATTT
4276603 TTAACCAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
17 2 0.04
18 41 0.91
19 2 0.04
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.49
Consensus pattern (18 bp):
AATTCGGTTAATTTGGTT
Found at i:4276573 original size:27 final size:27
Alignment explanation
Indices: 4276535--4276602 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
4276525 GTAGTGATTC
*
4276535 AATTTGGTTAATTTGGTTAATTCGGTT
1 AATTCGGTTAATTTGGTTAATTCGGTT
* *
4276562 AATTCAGG-TAATTCGGTTAATTTGGTT
1 AATTC-GGTTAATTTGGTTAATTCGGTT
4276589 AATTCGGTTAATTT
1 AATTCGGTTAATTT
4276603 TTAACCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.49
Consensus pattern (27 bp):
AATTCGGTTAATTTGGTTAATTCGGTT
Found at i:4289213 original size:34 final size:32
Alignment explanation
Indices: 4289174--4289239 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
4289164 AAACTGAAAC
4289174 CCTAAGCGCTGCCCCTGCTTCAGACTGTTGGTCT
1 CCTAAGCGC--CCCCTGCTTCAGACTGTTGGTCT
* * *
4289208 CCTAAGCGCCGCCTGCTTTAGACTTTTGGTCT
1 CCTAAGCGCCCCCTGCTTCAGACTGTTGGTCT
4289240 TCTACCACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 20 0.69
34 9 0.31
ACGTcount: A:0.12, C:0.33, G:0.23, T:0.32
Consensus pattern (32 bp):
CCTAAGCGCCCCCTGCTTCAGACTGTTGGTCT
Found at i:4301311 original size:2 final size:2
Alignment explanation
Indices: 4301306--4301331 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4301296 TACATGCACA
4301306 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4301332 TTCAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4302891 original size:30 final size:30
Alignment explanation
Indices: 4302857--4302925 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
4302847 TTATATTAAT
* * *
4302857 AATGATAAAATTTTATTCTGACCTCTCAAA
1 AATGATAAAAATTTAATCTAACCTCTCAAA
* *
4302887 AATGATAAAAATTTAATCTAACCTTTTAAA
1 AATGATAAAAATTTAATCTAACCTCTCAAA
*
4302917 AATTATAAA
1 AATGATAAA
4302926 GAAATAAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (30 bp):
AATGATAAAAATTTAATCTAACCTCTCAAA
Found at i:4311850 original size:20 final size:21
Alignment explanation
Indices: 4311823--4311874 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
4311813 GTTTTTTCAA
* *
4311823 TGTAAATTTTATTAATTTGAC
1 TGTAAATTTTATAAATTTAAC
*
4311844 T-TAAATTTAATAAATTTAAC
1 TGTAAATTTTATAAATTTAAC
*
4311864 TGTAAAATTTA
1 TGTAAATTTTA
4311875 CACATAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (21 bp):
TGTAAATTTTATAAATTTAAC
Found at i:4318240 original size:23 final size:24
Alignment explanation
Indices: 4318217--4318262 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
4318207 ATTAGACGAA
4318217 TAACTTAATTTTCGAAA-TGAGAAT
1 TAACTTAATTTTC-AAAGTGAGAAT
*
4318241 TATCTTAATTTTCAAAGTGAGA
1 TAACTTAATTTTCAAAGTGAGA
4318263 GTTGTATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (24 bp):
TAACTTAATTTTCAAAGTGAGAAT
Found at i:4319041 original size:12 final size:11
Alignment explanation
Indices: 4319012--4319054 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
4319002 TTACACATGA
4319012 ATTAAAAAATT
1 ATTAAAAAATT
*
4319023 CA-TAAAAAGTT
1 -ATTAAAAAATT
4319034 ATTAAAAAATT
1 ATTAAAAAATT
*
4319045 ATTTAAAAAT
1 ATTAAAAAAT
4319055 ATAGAGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 1 0.04
11 25 0.93
12 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (11 bp):
ATTAAAAAATT
Found at i:4319260 original size:15 final size:15
Alignment explanation
Indices: 4319237--4319268 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4319227 ATTAAAAATC
*
4319237 AATAGAAGTTTATAA
1 AATAAAAGTTTATAA
4319252 AATAAAAGTTTATAA
1 AATAAAAGTTTATAA
4319267 AA
1 AA
4319269 ATTATAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AATAAAAGTTTATAA
Found at i:4319955 original size:11 final size:10
Alignment explanation
Indices: 4319913--4319973 Score: 63
Period size: 10 Copynumber: 5.9 Consensus size: 10
4319903 AAATTTCTAT
4319913 ATTTTTAATA
1 ATTTTTAATA
*
4319923 GTTTTT-ATA
1 ATTTTTAATA
4319932 ATTATTT-ATA
1 ATT-TTTAATA
4319942 ATTTTCTAATA
1 ATTTT-TAATA
4319953 ATTTTTAATGA
1 ATTTTTAAT-A
4319964 ATTTTATAAT
1 ATTTT-TAAT
4319974 TCATGTTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 7 0.16
10 19 0.43
11 14 0.32
12 4 0.09
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:4319970 original size:30 final size:27
Alignment explanation
Indices: 4319904--4319974 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 27
4319894 ACATTTAAAA
*
4319904 AATTTCTAT-ATTTTTAATAGTTTTTAT
1 AATTT-TATAATTTTTAATAATTTTTAT
4319931 AATTATTTATAATTTTCTAATAATTTTTAAT
1 AA-T-TTTATAATTTT-TAATAATTTTT-AT
4319962 GAATTTTATAATT
1 -AATTTTATAATT
4319975 CATGTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
27 2 0.05
28 4 0.11
29 7 0.19
30 19 0.51
31 3 0.08
32 2 0.05
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (27 bp):
AATTTTATAATTTTTAATAATTTTTAT
Found at i:4327073 original size:8 final size:9
Alignment explanation
Indices: 4327055--4327108 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
4327045 CTTCTTCTTC
4327055 TTTTTATCT
1 TTTTTATCT
4327064 TTTTTA-CT
1 TTTTTATCT
4327072 TTTTTAT-T
1 TTTTTATCT
** *
4327080 ATTAATATTT
1 -TTTTTATCT
4327090 TTTTTATCT
1 TTTTTATCT
4327099 TTTTTA-CT
1 TTTTTATCT
4327107 TT
1 TT
4327109 GATGGTGAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 13 0.35
9 23 0.62
10 1 0.03
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTATCT
Found at i:4329701 original size:7 final size:7
Alignment explanation
Indices: 4329689--4329722 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
4329679 AAGATATTAG
4329689 TAAATGT
1 TAAATGT
4329696 TAAATGT
1 TAAATGT
4329703 TAAATGT
1 TAAATGT
*
4329710 TCAATGT
1 TAAATGT
*
4329717 TCAATG
1 TAAATG
4329723 AATTACTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (7 bp):
TAAATGT
Found at i:4336959 original size:31 final size:30
Alignment explanation
Indices: 4336901--4336960 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
4336891 AATTATTTAA
4336901 TATAAATAAATAAAATTATTATTTAACATG
1 TATAAATAAATAAAATTATTATTTAACATG
* *
4336931 TATAATTAATATAATATTATT-TTATAACAT
1 TATAAATAA-ATAAAATTATTATT-TAACAT
4336961 AATATATTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (30 bp):
TATAAATAAATAAAATTATTATTTAACATG
Found at i:4338014 original size:19 final size:19
Alignment explanation
Indices: 4337986--4338022 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4337976 AAGAAATTAT
4337986 AAATTATAAAT-AATATTG
1 AAATTATAAATAAATATTG
4338004 AAATATATAAATAAATATT
1 AAAT-TATAAATAAATATT
4338023 TAAAAACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATTATAAATAAATATTG
Found at i:4341196 original size:56 final size:55
Alignment explanation
Indices: 4341096--4341203 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 55
4341086 TTTTTTAAGA
* *
4341096 TATATTTAAAATATAAAAAATTAAATACATGACACACATATCATCATCTTAATTT
1 TATATTTAAAATATAAAAAATTAAATAAATGACACACATATCATCACCTTAATTT
* *
4341151 TATATTTAAAATTTAAAAATATTAAATAAATGATACACA-AGTCATCACCTTAA
1 TATATTTAAAATATAAAAA-ATTAAATAAATGACACACATA-TCATCACCTTAA
4341204 CCTTGTCTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
55 19 0.40
56 28 0.60
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (55 bp):
TATATTTAAAATATAAAAAATTAAATAAATGACACACATATCATCACCTTAATTT
Done.