Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 158 of 211
Found at i:46756971 original size:64 final size:66
Alignment explanation
Indices: 46756888--46757028 Score: 207
Period size: 64 Copynumber: 2.1 Consensus size: 66
46756878 CAAATAAATT
*
46756888 AAATAAAATAATAAAACATAGAATGTACATAACATAAATGATAAAACATA-AA-TA-ATAACATA
1 AAATAAAATAATAAAACATAGAATGTACATAACATAAATAATAAAACATAGAAGTACATAACATA
46756950 A
66 A
* *
46756951 ATAATAAAATAATAAGACATAGTATGTACATAACATAAATAATAAAACATAGAATGTACATAACA
1 A-AATAAAATAATAAAACATAGAATGTACATAACATAAATAATAAAACATAGAA-GTACATAACA
46757016 TAA
64 TAA
46757019 AAATTAAAAT
1 AAA-TAAAAT
46757029 CAAAACCAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
63 1 0.01
64 46 0.67
65 2 0.03
67 4 0.06
68 16 0.23
ACGTcount: A:0.62, C:0.08, G:0.06, T:0.24
Consensus pattern (66 bp):
AAATAAAATAATAAAACATAGAATGTACATAACATAAATAATAAAACATAGAAGTACATAACATA
A
Found at i:46757017 original size:16 final size:16
Alignment explanation
Indices: 46756967--46757017 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
46756957 AAATAATAAG
*
46756967 ACATAGTATGTACATA
1 ACATAGAATGTACATA
*
46756983 ACATA-AATAATA-A-A
1 ACATAGAAT-GTACATA
46756997 ACATAGAATGTACATA
1 ACATAGAATGTACATA
46757013 ACATA
1 ACATA
46757018 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
14 8 0.29
15 7 0.25
16 13 0.46
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.25
Consensus pattern (16 bp):
ACATAGAATGTACATA
Found at i:46757267 original size:27 final size:27
Alignment explanation
Indices: 46757219--46757283 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
46757209 ATAAGGGGGG
* * * *
46757219 TGGTGCCACCTGTGGCAGTGGCACCTT
1 TGGTGCCGCCTCTGCCACTGGCACCTT
46757246 TGGTGCCGCCTCTGCCACTGGCACCTT
1 TGGTGCCGCCTCTGCCACTGGCACCTT
46757273 TGGTGCCGCCT
1 TGGTGCCGCCT
46757284 GTGGCAGTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.08, C:0.35, G:0.31, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCTCTGCCACTGGCACCTT
Found at i:46757357 original size:11 final size:10
Alignment explanation
Indices: 46757334--46757381 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 10
46757324 TAATAAAATG
46757334 TTTGTATTATT
1 TTTGTATT-TT
*
46757345 TTGGTATTTT
1 TTTGTATTTT
46757355 TTT-TAATTTT
1 TTTGT-ATTTT
46757365 TTTGTATTATT
1 TTTGTATT-TT
46757376 TTTGTA
1 TTTGTA
46757382 AAAAACCCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 1 0.03
10 15 0.47
11 16 0.50
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (10 bp):
TTTGTATTTT
Found at i:46778611 original size:50 final size:50
Alignment explanation
Indices: 46778508--46778746 Score: 180
Period size: 50 Copynumber: 4.7 Consensus size: 50
46778498 ATGAGATCCG
*
46778508 ATGTAAGACCATGTCTGGGACATGG-GATTGGCATTATTGAAGTTATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCG-TTGGC---ATCG-AG--ATGAGAGGTCCC
*
46778564 ATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGTGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCC
** * * * * **
46778614 CGGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCC
* * * * * * **
46778664 ATGTAAGACCATATATGGGATATGACATTGGCAGTAC-A-A-GAAACATCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCA-T-CGAGATGAGAGGTCCC
* * *
46778713 ATGTAAGACCATATTTGGGACATGGCTTTGGCAT
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCAT
46778747 GTTGTTATCA
Statistics
Matches: 154, Mismatches: 26, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 36 0.23
50 79 0.51
51 1 0.01
52 3 0.02
53 3 0.02
56 30 0.19
57 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
ATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCC
Found at i:46778972 original size:20 final size:20
Alignment explanation
Indices: 46778947--46778996 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
46778937 ATGAGTTATT
46778947 CAAGTAAGCAAGTAAGTAAA
1 CAAGTAAGCAAGTAAGTAAA
46778967 CAAGTAAG-AGAGTAAGTAAA
1 CAAGTAAGCA-AGTAAGTAAA
*
46778987 GAAG-AAGCAA
1 CAAGTAAGCAA
46778997 AGACCATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.56, C:0.08, G:0.24, T:0.12
Consensus pattern (20 bp):
CAAGTAAGCAAGTAAGTAAA
Found at i:46784567 original size:50 final size:50
Alignment explanation
Indices: 46784443--46784691 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
46784433 GATAATAACA
* * ** * *
46784443 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
46784494 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
46784544 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
46784594 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
46784649 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
46784692 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:46784621 original size:100 final size:104
Alignment explanation
Indices: 46784442--46784691 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
46784432 TGATAATAAC
**
46784442 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
46784507 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
46784544 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
46784607 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
46784649 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
46784692 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:46784807 original size:13 final size:13
Alignment explanation
Indices: 46784786--46784817 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
46784776 GCTTGGATCA
*
46784786 TCATCAAATAAAT
1 TCATAAAATAAAT
46784799 TCATAAAATAAAT
1 TCATAAAATAAAT
46784812 TCATAA
1 TCATAA
46784818 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:46785064 original size:30 final size:30
Alignment explanation
Indices: 46785029--46785086 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46785019 CCTCGACTCT
*
46785029 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
46785059 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
46785087 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:46792157 original size:50 final size:50
Alignment explanation
Indices: 46792033--46792281 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
46792023 GATAATAACA
* * ** * *
46792033 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
46792084 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
46792134 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
46792184 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
46792239 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
46792282 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:46792211 original size:100 final size:104
Alignment explanation
Indices: 46792032--46792281 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
46792022 TGATAATAAC
**
46792032 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
46792097 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
46792134 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
46792197 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
46792239 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
46792282 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:46792397 original size:13 final size:13
Alignment explanation
Indices: 46792376--46792407 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
46792366 GCTTGGATCA
*
46792376 TCATCAAATAAAT
1 TCATAAAATAAAT
46792389 TCATAAAATAAAT
1 TCATAAAATAAAT
46792402 TCATAA
1 TCATAA
46792408 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:46792654 original size:30 final size:30
Alignment explanation
Indices: 46792619--46792676 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46792609 CCTCGACTCT
*
46792619 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
46792649 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
46792677 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:46800045 original size:39 final size:39
Alignment explanation
Indices: 46799991--46800065 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
46799981 TGAGATCTCC
46799991 GATGTGCCGAATCCAGAGCTTAACCAAGCGAATTACTCT
1 GATGTGCCGAATCCAGAGCTTAACCAAGCGAATTACTCT
*
46800030 GATGTGCTGAATCCAGAGCTTAACCAAGCGAATTAC
1 GATGTGCCGAATCCAGAGCTTAACCAAGCGAATTAC
46800066 CTAAAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (39 bp):
GATGTGCCGAATCCAGAGCTTAACCAAGCGAATTACTCT
Found at i:46805496 original size:13 final size:13
Alignment explanation
Indices: 46805478--46805506 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
46805468 AATACTTTAT
46805478 CATGTAGGGTTCA
1 CATGTAGGGTTCA
46805491 CATGTAGGGTTCA
1 CATGTAGGGTTCA
46805504 CAT
1 CAT
46805507 CTTAAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (13 bp):
CATGTAGGGTTCA
Found at i:46806070 original size:17 final size:16
Alignment explanation
Indices: 46806030--46806078 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
46806020 TTCTCTAAGT
46806030 GTCCGCA-ATACAGGGG
1 GTCCGCATA-ACAGGGG
*
46806046 GT-CACATAACATGGGG
1 GTCCGCATAACA-GGGG
46806062 GTCCGCATAACAGGGG
1 GTCCGCATAACAGGGG
46806078 G
1 G
46806079 CTCGCACACA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 6 0.21
16 14 0.50
17 8 0.29
ACGTcount: A:0.27, C:0.22, G:0.37, T:0.14
Consensus pattern (16 bp):
GTCCGCATAACAGGGG
Found at i:46806084 original size:16 final size:15
Alignment explanation
Indices: 46806039--46806084 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
46806029 TGTCCGCAAT
*
46806039 ACAGGGGGTCACATA
1 ACAGGGGGTCGCATA
46806054 ACATGGGGGTCCGCATA
1 ACA-GGGGGT-CGCATA
46806071 ACAGGGGGCTCGCA
1 ACAGGGGG-TCGCA
46806085 CACACGTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 3 0.11
16 15 0.56
17 9 0.33
ACGTcount: A:0.26, C:0.24, G:0.37, T:0.13
Consensus pattern (15 bp):
ACAGGGGGTCGCATA
Found at i:46807263 original size:30 final size:29
Alignment explanation
Indices: 46807224--46807280 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
46807214 TCACTATCAT
* * *
46807224 TTATAAAATTATTGATATTTTATTTAGACA
1 TTATAAAATT-TTCAAATTTTAGTTAGACA
*
46807254 TTATGAAATTTTCAAATTTTAGTTAGA
1 TTATAAAATTTTCAAATTTTAGTTAGA
46807281 AATTTTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 14 0.61
30 9 0.39
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.49
Consensus pattern (29 bp):
TTATAAAATTTTCAAATTTTAGTTAGACA
Found at i:46807996 original size:14 final size:15
Alignment explanation
Indices: 46807969--46808011 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
46807959 AAACTTCTTG
46807969 ATTA-AAAATAAATA
1 ATTATAAAATAAATA
46807983 ATTATAAAAT-AATA
1 ATTATAAAATAAATA
*
46807997 A-TATATAATAAATA
1 ATTATAAAATAAATA
46808011 A
1 A
46808012 CAAATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 7 0.27
14 14 0.54
15 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATTATAAAATAAATA
Found at i:46811336 original size:99 final size:99
Alignment explanation
Indices: 46811162--46811361 Score: 373
Period size: 99 Copynumber: 2.0 Consensus size: 99
46811152 TAAAAGAAGG
* *
46811162 AAATAAGAAAATAAATCCATTTTGGTATCAATTTGTGCGTGAAAGTGGGATTTTCTTTAACATTT
1 AAATAAGAAAATAAATCCATTTTAGTATCAATTTGTGCGCGAAAGTGGGATTTTCTTTAACATTT
46811227 GCAACAATAACTTCAATTGCAATTGGAATCCAAA
66 GCAACAATAACTTCAATTGCAATTGGAATCCAAA
46811261 AAATAAGAAAATAAATCCATTTTAGTATCAATTTGTGCGCGAAAGTGGGATTTTCTTTAACATTT
1 AAATAAGAAAATAAATCCATTTTAGTATCAATTTGTGCGCGAAAGTGGGATTTTCTTTAACATTT
*
46811326 GCAACGATAACTTCAATTGCAATTGGAATCCAAA
66 GCAACAATAACTTCAATTGCAATTGGAATCCAAA
46811360 AA
1 AA
46811362 TAAATAAAGA
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (99 bp):
AAATAAGAAAATAAATCCATTTTAGTATCAATTTGTGCGCGAAAGTGGGATTTTCTTTAACATTT
GCAACAATAACTTCAATTGCAATTGGAATCCAAA
Found at i:46812397 original size:17 final size:18
Alignment explanation
Indices: 46812375--46812409 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46812365 TATTTTTTTA
46812375 ATTTAT-ATTTCTTATTT
1 ATTTATAATTTCTTATTT
*
46812392 ATTTATAATTTTTTATTT
1 ATTTATAATTTCTTATTT
46812410 GTTCTTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTATAATTTCTTATTT
Found at i:46813702 original size:2 final size:2
Alignment explanation
Indices: 46813695--46813731 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
46813685 ATACATACAT
*
46813695 AG AG AG AG AG TG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
46813732 TCTCACCAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.03
Consensus pattern (2 bp):
AG
Found at i:46815548 original size:6 final size:7
Alignment explanation
Indices: 46815514--46815554 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 7
46815504 TTAAGAATTA
46815514 AGAGAAG
1 AGAGAAG
46815521 AGAGAGAG
1 AGAGA-AG
46815529 AGAGAGAG
1 AGAGA-AG
46815537 AGAGAAG
1 AGAGAAG
46815544 A-AGAAG
1 AGAGAAG
46815550 A-AGAA
1 AGAGAA
46815555 AGCAAAGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 10 0.30
7 8 0.24
8 15 0.45
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (7 bp):
AGAGAAG
Found at i:46815554 original size:12 final size:14
Alignment explanation
Indices: 46815514--46815554 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
46815504 TTAAGAATTA
46815514 AGAGAAGAGAGAGAG
1 AGAGAAGAGAGA-AG
46815529 AGAGAGAGAGAGAAG
1 AGAGA-AGAGAGAAG
46815544 A-AGAAGA-AGAA
1 AGAGAAGAGAGAA
46815555 AGCAAAGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.16
13 3 0.12
14 3 0.12
15 8 0.32
16 7 0.28
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGAGAAGAGAGAAG
Found at i:46815731 original size:6 final size:6
Alignment explanation
Indices: 46815720--46815759 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
46815710 TTATTCTCTC
46815720 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTC-TT TTTCTT TTT
46815760 TTTATATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:46815743 original size:18 final size:19
Alignment explanation
Indices: 46815720--46815759 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
46815710 TTATTCTCTC
46815720 TTTCTTTTTC-TTTTTCTT
1 TTTCTTTTTCTTTTTTCTT
46815738 TTTCTTTTTCTTTTTTCTT
1 TTTCTTTTTCTTTTTTCTT
46815757 TTT
1 TTT
46815760 TTTATATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTCTTTTTCTTTTTTCTT
Found at i:46817973 original size:38 final size:38
Alignment explanation
Indices: 46817930--46818099 Score: 245
Period size: 38 Copynumber: 4.5 Consensus size: 38
46817920 TTACCGATTG
*
46817930 CATGTTCAA-CATGCCTACTGTTACTGTTGAACCGAGA-A
1 CATGTT-AAGCATGTCTACTGTTACTGTTGAACCGA-ATA
*
46817968 CATGTTAAGCATGTCTACTGTTACTGTTGAACTGAATA
1 CATGTTAAGCATGTCTACTGTTACTGTTGAACCGAATA
* *
46818006 CATGTTAAACATGTCTACTGTTACTGTTGAACCCAATA
1 CATGTTAAGCATGTCTACTGTTACTGTTGAACCGAATA
* **
46818044 CATGTTAAGCATGTCTACTGCTACTGTTGAATTGAATA
1 CATGTTAAGCATGTCTACTGTTACTGTTGAACCGAATA
46818082 CATGTTAAGCATGTCTAC
1 CATGTTAAGCATGTCTAC
46818100 AATTTTTACA
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
37 3 0.03
38 117 0.98
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (38 bp):
CATGTTAAGCATGTCTACTGTTACTGTTGAACCGAATA
Found at i:46818024 original size:76 final size:76
Alignment explanation
Indices: 46817930--46818099 Score: 270
Period size: 76 Copynumber: 2.2 Consensus size: 76
46817920 TTACCGATTG
* * * *
46817930 CATGTTCAACATGCCTACTGTTACTGTTGAACCGAGA-ACATGTTAAGCATGTCTACTGTTACTG
1 CATGTTAAACATGTCTACTGTTACTGTTGAACCCA-ATACATGTTAAGCATGTCTACTGCTACTG
46817994 TTGAACTGAATA
65 TTGAACTGAATA
46818006 CATGTTAAACATGTCTACTGTTACTGTTGAACCCAATACATGTTAAGCATGTCTACTGCTACTGT
1 CATGTTAAACATGTCTACTGTTACTGTTGAACCCAATACATGTTAAGCATGTCTACTGCTACTGT
*
46818071 TGAATTGAATA
66 TGAACTGAATA
*
46818082 CATGTTAAGCATGTCTAC
1 CATGTTAAACATGTCTAC
46818100 AATTTTTACA
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
75 1 0.01
76 86 0.99
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (76 bp):
CATGTTAAACATGTCTACTGTTACTGTTGAACCCAATACATGTTAAGCATGTCTACTGCTACTGT
TGAACTGAATA
Found at i:46824807 original size:13 final size:13
Alignment explanation
Indices: 46824789--46824847 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
46824779 TTTGGCAATA
*
46824789 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
46824802 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
46824815 -TTGTGGAAATGTG
1 CTT-TTGAAAAGTG
*
46824828 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTG
46824841 CTTTTGA
1 CTTTTGA
46824848 GAAATAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
12 2 0.05
13 35 0.90
14 2 0.05
ACGTcount: A:0.25, C:0.05, G:0.31, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:46827047 original size:5 final size:5
Alignment explanation
Indices: 46827037--46827189 Score: 135
Period size: 5 Copynumber: 29.0 Consensus size: 5
46827027 AGCATATCTT
*
46827037 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATT ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* * * * * *
46827087 ATATC GAATTTC ATATC ATGTT GTAGCAC ATTTC ATATC ATATCTC ATATC
1 ATATC --ATATC ATATC ATATC ATA--TC ATATC ATATC ATA--TC ATATC
* * * *
46827138 ATATC ACATT ATATCTC TTATC ATATC ATATC ATATC ATATC ATATC CTATC
1 ATATC ATATC ATA--TC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
46827190 TCATCTACTA
Statistics
Matches: 119, Mismatches: 21, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
5 106 0.89
7 13 0.11
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (5 bp):
ATATC
Found at i:46827154 original size:22 final size:22
Alignment explanation
Indices: 46827123--46827184 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
46827113 CACATTTCAT
46827123 ATCATATCTCATATCATATCAC
1 ATCATATCTCATATCATATCAC
* * *
46827145 ATTATATCTCTTATCATATCAT
1 ATCATATCTCATATCATATCAC
46827167 ATCATA--TCATATCATATC
1 ATCATATCTCATATCATATC
46827185 CTATCTCATC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 11 0.31
22 24 0.69
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (22 bp):
ATCATATCTCATATCATATCAC
Found at i:46831054 original size:44 final size:45
Alignment explanation
Indices: 46831004--46831293 Score: 248
Period size: 44 Copynumber: 6.7 Consensus size: 45
46830994 ATCTGCTATT
* * *
46831004 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGGGTTCACGATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
* *
46831048 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGA-CCTACAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTC-ACAATC
* * * * *
46831092 TTCAATCTATTCCACTGCTG-CCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
* * *
46831136 TTCAACCTATTCCACTATTGACT-AGGGAGATAAGATTCACGATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
* * ** * *
46831180 TTTAACCTATTCCATTGTTGTC-CAAGGAGATAGGATT--C--T-
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
* * * * *
46831219 TT-AATCTATTCCACTGCTG-CCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
*
46831262 TTCAACCTATTCCACTGCTGAC-CAGGGAGATA
1 TTCAACCTATTCCACTACTGACTCAGGGAGATA
46831294 AGGCTGGTAT
Statistics
Matches: 203, Mismatches: 29, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
37 1 0.00
38 27 0.13
39 2 0.01
40 2 0.01
42 2 0.01
43 4 0.02
44 161 0.79
45 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (45 bp):
TTCAACCTATTCCACTACTGACTCAGGGAGATAGGATTCACAATC
Found at i:46831118 original size:88 final size:85
Alignment explanation
Indices: 46831004--46831293 Score: 284
Period size: 88 Copynumber: 3.4 Consensus size: 85
46830994 ATCTGCTATT
* * * *
46831004 TTCAACCTACTCCACTACTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTC-C-ATCTTCAACCTATTCCACTGCTGA
46831069 CCAGGGAGATAGGACCTACAATC
64 CCAGGGAGATAGGA-CTACAATC
* * **
46831092 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTATTGA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTC-C-ATCTTCAACCTATTCCACTGCTGA
* * * *
46831157 CTAGGGAGATAAGATTCACGATC
64 CCAGGGAGATAGGACT-ACAATC
* * * * * * *
46831180 TTTAACCTATTCCATTGTTGTCCAAGGAGATAGGATT-C-T-TT-AATCTATTCCACTGCTGCCC
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCCATCTTCAACCTATTCCACTGCTGACC
*
46831241 AGGGAGATAGAATTCT-CAATC
66 AGGGAGATAGGA--CTACAATC
*
46831262 TTCAACCTATTCCACTGCTGACCAGGGAGATA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATA
46831294 AGGCTGGTAT
Statistics
Matches: 164, Mismatches: 35, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
82 56 0.34
83 2 0.01
84 2 0.01
86 1 0.01
87 1 0.01
88 102 0.62
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (85 bp):
TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCCATCTTCAACCTATTCCACTGCTGACC
AGGGAGATAGGACTACAATC
Found at i:46831220 original size:38 final size:38
Alignment explanation
Indices: 46831178--46831293 Score: 106
Period size: 38 Copynumber: 2.9 Consensus size: 38
46831168 AGATTCACGA
* * * *
46831178 TCTTTAACCTATTCCATTGTTGTCCAAGGAGATAGGAT
1 TCTTTAACCTATTCCACTGCTGCCCAAGGAGATAGAAT
* *
46831216 TCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATT
1 TCTTTAACCTATTCCACTGCTGCCCAAGGAGATAGAA-T
* *
46831255 CTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATA
1 -TC--T-TT-AACCTATTCCACTGCTGCCCAAGGAGATA
46831294 AGGCTGGTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
38 31 0.48
39 1 0.02
40 2 0.03
42 1 0.02
43 2 0.03
44 27 0.42
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (38 bp):
TCTTTAACCTATTCCACTGCTGCCCAAGGAGATAGAAT
Found at i:46831276 original size:126 final size:128
Alignment explanation
Indices: 46831004--46831295 Score: 410
Period size: 126 Copynumber: 2.3 Consensus size: 128
46830994 ATCTGCTATT
* * *
46831004 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTACTGACT-AGGGAGATAAGATTCACGATCTTCAACCTATTCCACTGCTG
*
46831068 ACCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCA
65 ACCAAGGAGATAGGA-CT---ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCA
46831133 ATC
126 ATC
* * * * *
46831136 TTCAACCTATTCCACTATTGACTAGGGAGATAAGATTCACGATCTTTAACCTATTCCATTGTTGT
1 TTCAACCTATTCCACTACTGACTAGGGAGATAAGATTCACGATCTTCAACCTATTCCACTGCTGA
*
46831201 CCAAGGAGATAGGA-T-TCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
66 CCAAGGAGATAGGACTATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
* *
46831262 TTCAACCTATTCCACTGCTGACCAGGGAGATAAG
1 TTCAACCTATTCCACTACTGACTAGGGAGATAAG
46831296 GCTGGTATCT
Statistics
Matches: 146, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
126 76 0.52
130 1 0.01
132 67 0.46
133 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (128 bp):
TTCAACCTATTCCACTACTGACTAGGGAGATAAGATTCACGATCTTCAACCTATTCCACTGCTGA
CCAAGGAGATAGGACTATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
Found at i:46831408 original size:88 final size:88
Alignment explanation
Indices: 46831283--46831793 Score: 725
Period size: 88 Copynumber: 5.8 Consensus size: 88
46831273 CCACTGCTGA
** * *
46831283 CCAGGGAGATAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAAGCAAGATCTACTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
* *
46831348 TCTTCAACTTGCTCCACTACGAC
66 TCTTCAACCTGCTCCACTACAAC
*
46831371 CCAGGGAGGCAAGGCTGGTATTTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
*
46831436 TCTTCAACCTGCTCCACTACGAC
66 TCTTCAACCTGCTCCACTACAAC
* * * *
46831459 CCAGGCAGGCAAGGCCGGTATCTTCAATCTGCTTCATTGTCGGTACAGGAAGGCAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
*
46831524 TCTTCAACCTACTCCACTACAAC
66 TCTTCAACCTGCTCCACTACAAC
* *
46831547 CCTGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
46831612 TCTTCAACCTGCTCCACTACAAC
66 TCTTCAACCTGCTCCACTACAAC
* * * * * * * * * *
46831635 CCAGGGAGGCAAGACTAGTATCTTCGATCTGCTTCGCTGTTGATGCAGAAAGACAAAATTTGCTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
46831700 TCTTCAACCTGCTCCACTACAAC
66 TCTTCAACCTGCTCCACTACAAC
* * * * * * * *
46831723 CCAGGGAGGCAAGGCTGGTGTCTTTGATCTGTTTCGCTGCCAGTACAGGAAGGCAGGATCTGTTA
1 CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
46831788 TCTTCA
66 TCTTCA
46831794 CTGATCTGCT
Statistics
Matches: 375, Mismatches: 48, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 375 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (88 bp):
CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTA
TCTTCAACCTGCTCCACTACAAC
Found at i:46833059 original size:16 final size:16
Alignment explanation
Indices: 46833038--46833073 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
46833028 GGCCTCTCTA
46833038 TTTTCTTTCTTCTTTT
1 TTTTCTTTCTTCTTTT
*
46833054 TTTTCTTTTTTCTTTT
1 TTTTCTTTCTTCTTTT
46833070 TTTT
1 TTTT
46833074 TTGAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTCTTTCTTCTTTT
Found at i:46842456 original size:5 final size:6
Alignment explanation
Indices: 46842397--46842439 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
46842387 TTTTGATAGA
46842397 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG -TTTAG -TTTAG TTT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTT
46842440 GTTTTTCTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (6 bp):
TTTTAG
Found at i:46849187 original size:59 final size:56
Alignment explanation
Indices: 46849115--46849265 Score: 196
Period size: 59 Copynumber: 2.6 Consensus size: 56
46849105 CTGCGAGTTG
46849115 TTTTATACTTAAGAAAATTTTGAAAGATAACACA-AATGGGAATGTTACTCCAAGAGCTA
1 TTTTATACTTAAGAAAATTTTGAAA-ATAACACACAA-GGG-ATGTTACTCCAAGAG-TA
* ** *
46849174 TTTTATACTTAAGAAAATTTTGACAAATAACACAGCCAGGGATGTTACTCCGTGAGTT
1 TTTTATACTTAAGAAAATTTTGA-AAATAACACA-CAAGGGATGTTACTCCAAGAGTA
46849232 TTTTATACTTAAGAAAATTTTGAAATATAACACA
1 TTTTATACTTAAGAAAATTTTGAAA-ATAACACA
46849266 GCTGAGAGTT
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
57 2 0.02
58 32 0.38
59 44 0.52
60 5 0.06
61 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (56 bp):
TTTTATACTTAAGAAAATTTTGAAAATAACACACAAGGGATGTTACTCCAAGAGTA
Found at i:46849262 original size:58 final size:57
Alignment explanation
Indices: 46849061--46849267 Score: 229
Period size: 58 Copynumber: 3.6 Consensus size: 57
46849051 AAGCTGTTTC
* * * * * * * *
46849061 ATACTTAAGAAAATCTCGAAAGATAATATAGCTGAGATGTTACTCTGCGAGTTGTTTT
1 ATACTTAAGAAAATTTTGAAAGATAACACAGCAGGGATGTTACTCCGAGAGTT-TTTT
* * *
46849119 ATACTTAAGAAAATTTTGAAAGATAACACA-AATGGGAATGTTACTCCAAGAGCTATTTT
1 ATACTTAAGAAAATTTTGAAAGATAACACAGCA-GGG-ATGTTACTCCGAGAG-TTTTTT
*
46849178 ATACTTAAGAAAATTTTGACAA-ATAACACAGCCAGGGATGTTACTCCGTGAGTTTTTT
1 ATACTTAAGAAAATTTTGA-AAGATAACACAG-CAGGGATGTTACTCCGAGAGTTTTTT
*
46849236 ATACTTAAGAAAATTTTGAAATATAACACAGC
1 ATACTTAAGAAAATTTTGAAAGATAACACAGC
46849268 TGAGAGTTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
57 3 0.02
58 61 0.48
59 56 0.44
60 6 0.05
61 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (57 bp):
ATACTTAAGAAAATTTTGAAAGATAACACAGCAGGGATGTTACTCCGAGAGTTTTTT
Found at i:46856219 original size:16 final size:15
Alignment explanation
Indices: 46856194--46856223 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
46856184 CTATTTCGTA
46856194 GATTGTTGGAAGCTC
1 GATTGTTGGAAGCTC
46856209 GATTAGTTGGAAGCT
1 GATT-GTTGGAAGCT
46856224 TGTCGAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33
Consensus pattern (15 bp):
GATTGTTGGAAGCTC
Found at i:46859187 original size:16 final size:16
Alignment explanation
Indices: 46859166--46859199 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
46859156 CGCGGCCTAT
46859166 CTGGTCCTTGAATGTC
1 CTGGTCCTTGAATGTC
46859182 CTGGTCCTTGAATGTC
1 CTGGTCCTTGAATGTC
46859198 CT
1 CT
46859200 ATTTACCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.38
Consensus pattern (16 bp):
CTGGTCCTTGAATGTC
Found at i:46860555 original size:20 final size:21
Alignment explanation
Indices: 46860518--46860556 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
46860508 TATTTACCTC
**
46860518 TAAAGTTAAAAGTCAAAACAT
1 TAAAGTTAAAAGGAAAAACAT
46860539 TAAA-TTAAAAGGAAAAAC
1 TAAAGTTAAAAGGAAAAAC
46860557 TACATCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (21 bp):
TAAAGTTAAAAGGAAAAACAT
Found at i:46864139 original size:154 final size:151
Alignment explanation
Indices: 46863890--46864544 Score: 852
Period size: 154 Copynumber: 4.4 Consensus size: 151
46863880 CAATTGTTCA
* * *
46863890 TATTTTGGCCCTTTTTTCGTATTTTTTT--CGGATTTTATTAC-TTTAAAAAATATACTATTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAA-ATACTATTTTT
46863952 TAATTTT-TTAATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTT
65 TAATTTTATT-ATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTT
46864016 TTAAATAAATTTTTAAAAAAAACCT
129 TTAAATAAA--TTTAAAAAAAACCT
* *
46864041 TATTTCGGCCCTATGTTCGTATTTTTTTCTCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
* *
46864106 AATTTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTT
66 AA-TTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTTT
* *
46864171 TAATTAAA-TT-AAAAAATCCT
130 TAAATAAATTTAAAAAAAACCT
*
46864191 TATTTCGGCCCTTTGTTCGTATTTTTTT-CCAGATTTTATTACTTTCAATAAAAATA-TA----T
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAA-AAAAATACTATTTTT
* *
46864250 T-ATTTTATTATTTTACATTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTTT
65 TAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTTT
* *
46864314 TAAATAAATTTAGAAAAATCCT
130 TAAATAAATTTAAAAAAAACCT
* * * *
46864336 TATTTCGGCCATTTGTTCATATTTTTTCCCCAGAGTTTATTAC-TTTAAACAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAA-AAA-ATACTATTTT
* * * * * *
46864400 CTAATTTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTATGTTTT
64 TTAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTT
46864465 TTAAATAAATTTTAAAAAAAACTCT
129 TTAAATAAA-TTTAAAAAAAAC-CT
* * * * *
46864490 TATTTCGGCCTTTTGTTCATATTTTTTTCCCGGATTTTCTTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAA-AAAAA
46864545 AAAACACACT
Statistics
Matches: 448, Mismatches: 35, Indels: 39
0.86 0.07 0.07
Matches are distributed among these distances:
143 65 0.15
144 4 0.01
145 43 0.10
146 16 0.04
147 2 0.00
149 20 0.04
150 43 0.10
151 28 0.06
152 66 0.15
153 36 0.08
154 115 0.26
155 9 0.02
156 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.52
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTTTT
AAATAAATTTAAAAAAAACCT
Found at i:46864443 original size:295 final size:302
Alignment explanation
Indices: 46863890--46864544 Score: 913
Period size: 295 Copynumber: 2.2 Consensus size: 302
46863880 CAATTGTTCA
* *
46863890 TATTTTGGCCCTTTTTTCGTATTTTTTT-CGGATTTTATTACTTT-AA-AAAATATACTATTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCGGATTTTATTACTTTCAATAAAA-ATACTATTTTT
*
46863952 TAATTTTTTAATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTGTTTTT
65 TAA---TTTAATTTTACATTATTTTAGTACATCATATTTGAAATGTATTAATTTACTGTGTTTTT
* * * * *
46864017 TAAATAAATTTTTAAAAAAAACCTTATTTCGGCCCTATGTTCGTATTTTTTTCTCAGATTTTATT
127 TAAATAAA-TTTTAAAAAAAACCTTATTTCGGCCATATGTTCATATTTTTTCCCCAGAGTTTATT
* * *
46864082 ACTTTTAAAAAAATACTATTTTTTAATTTTTTTTATTTTACATTATTTTAGTACATTATATTTGA
191 ACTTTTAAAAAAATACTATTTTCTAATTTTTATTATTTTAAATTATTTTAGTACATTATATTTGA
* * *
46864147 AATGTATTAATTTAGTGTGTTTTTTAATTAAA-TT-AAAAAATC-CT
256 AATGTATTAATTTAGTATGTTTTTTAAATAAATTTAAAAAAAACTCT
*
46864191 TATTTCGGCCCTTTGTTCGTATTTTTTTCCAGATTTTATTACTTTCAATAAAAATA-TATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCGGATTTTATTACTTTCAATAAAAATACTATT-TTT
*
46864255 T-A-TT-ATTTTACATTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTTTTAA
65 TAATTTAATTTTACATTATTTTAGTACATCATATTTGAAATGTATTAATTTACTGTGTTTTTTAA
* * *
46864317 ATAAA-TTTAGAAAAATCCTTATTTCGGCCATTTGTTCATATTTTTTCCCCAGAGTTTATTAC-T
130 ATAAATTTTAAAAAAAACCTTATTTCGGCCATATGTTCATATTTTTTCCCCAGAGTTTATTACTT
*
46864380 TTAAACAAATATACTATTTTCTAA-TTTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAA
195 TTAAA-AAA-ATACTATTTTCTAATTTTTATTATTTTAAATTATTTTAGTACATTATATTTGAAA
*
46864444 TGTATTCATTTAGTATGTTTTTTAAATAAATTTTAAAAAAAACTCT
258 TGTATTAATTTAGTATGTTTTTTAAATAAA-TTTAAAAAAAACTCT
* * *
46864490 TATTTCGGCCTTTTGTTCATATTTTTTTCCCGGATTTTCTTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTT-CCGGATTTTATTACTTTCAATAAAAA
46864545 AAAACACACT
Statistics
Matches: 318, Mismatches: 25, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
294 6 0.02
295 116 0.36
296 13 0.04
297 63 0.20
298 9 0.03
299 28 0.09
300 24 0.08
301 26 0.08
302 20 0.06
303 9 0.03
304 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.52
Consensus pattern (302 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCGGATTTTATTACTTTCAATAAAAATACTATTTTTT
AATTTAATTTTACATTATTTTAGTACATCATATTTGAAATGTATTAATTTACTGTGTTTTTTAAA
TAAATTTTAAAAAAAACCTTATTTCGGCCATATGTTCATATTTTTTCCCCAGAGTTTATTACTTT
TAAAAAAATACTATTTTCTAATTTTTATTATTTTAAATTATTTTAGTACATTATATTTGAAATGT
ATTAATTTAGTATGTTTTTTAAATAAATTTAAAAAAAACTCT
Found at i:46864710 original size:149 final size:148
Alignment explanation
Indices: 46864543--46864896 Score: 507
Period size: 149 Copynumber: 2.4 Consensus size: 148
46864533 TTTCAATAAA
*
46864543 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
1 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
* *
46864608 AGAAAATAATATATTTTTTAAAAGTAATAAAATCCGAG-AAAAATACGAACAAATGGTCAAAATA
66 -GAAAATAATAT-TTTTTTAAAAGTAATAAAATCCGAGAAAAAATACGAACAAAGGGCCAAAATA
46864672 AG-GATTTTTTTAATTTATTT
129 AGAG-TTTTTTTAATTTATTT
*
46864692 AAAAAACACACTAAATTAATACATTTCAGACATAATGTACTAAAATAATGTAAAATAAAAAAATT
1 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
* * * * * * *
46864757 TAAAATAGTATTTTTTTAGAAGTAATAAAATTCGAGAAAAAAATACGAATATAGGGCCGAAATAA
66 GAAAATAATATTTTTTTAAAAGTAATAAAATCCGAG-AAAAAATACGAACAAAGGGCCAAAATAA
46864822 GAGTTTTTTTAATTTATTT
130 GAGTTTTTTTAATTTATTT
* * * *
46864841 AAAAAATACAATAAATTAATATATTTC-AACTATAATGTACTAAAATAATATAAAAT
1 AAAAAACACACTAAATTAATACATTTCAAAC-ATAATGTACTAAAATAATGTAAAAT
46864897 TTAAAAATAA
Statistics
Matches: 185, Mismatches: 16, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
147 23 0.12
148 11 0.06
149 150 0.81
150 1 0.01
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.32
Consensus pattern (148 bp):
AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
GAAAATAATATTTTTTTAAAAGTAATAAAATCCGAGAAAAAATACGAACAAAGGGCCAAAATAAG
AGTTTTTTTAATTTATTT
Found at i:46865329 original size:12 final size:11
Alignment explanation
Indices: 46865314--46865381 Score: 56
Period size: 11 Copynumber: 6.4 Consensus size: 11
46865304 AAAATTAAAA
46865314 AAAAAGTATTTT
1 AAAAA-TATTTT
46865326 AAAAATATTTT
1 AAAAATATTTT
46865337 --AAA-A--TT
1 AAAAATATTTT
* *
46865343 AAAAAAATTTAA
1 AAAAATATTT-T
46865355 AAAAAGTATTTT
1 AAAAA-TATTTT
46865367 AAAAATATTTT
1 AAAAATATTTT
46865378 AAAA
1 AAAA
46865382 TTAAAAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
6 2 0.04
8 4 0.09
9 4 0.09
11 17 0.37
12 15 0.33
13 4 0.09
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:46865357 original size:17 final size:17
Alignment explanation
Indices: 46865324--46865357 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46865314 AAAAAGTATT
* *
46865324 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
46865341 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
46865358 AAGTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:46865431 original size:41 final size:41
Alignment explanation
Indices: 46865287--46865432 Score: 222
Period size: 41 Copynumber: 3.5 Consensus size: 41
46865277 GGCCCATTTT
**
46865287 TATTTTAAAAATTTTAAAAAATTAAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAAAATT--AAAAAAAGTATTTTAAAAA
*
46865331 TATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
*
46865372 TATTTTAAAATTAAAAAAAATTAAAAAAAGTA-TGTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
46865412 TATTTTAAAATTAAAAAAAAT
1 TATTTTAAAATTAAAAAAAAT
46865433 AAATATATTT
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
40 28 0.29
41 50 0.52
43 13 0.13
44 6 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:46873687 original size:15 final size:15
Alignment explanation
Indices: 46873651--46873689 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
46873641 GCAAATATCG
*
46873651 TGATAACAAATACAA
1 TGATAATAAATACAA
46873666 T-AGTAATAAATACAA
1 TGA-TAATAAATACAA
46873681 TGATAATAA
1 TGATAATAA
46873690 TTTTAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.26
Consensus pattern (15 bp):
TGATAATAAATACAA
Found at i:46875721 original size:44 final size:44
Alignment explanation
Indices: 46875668--46875894 Score: 157
Period size: 44 Copynumber: 5.1 Consensus size: 44
46875658 TTAGGGAGAC
*
46875668 AAGATTTGTTCATTCAGTCTGC-CGCACTGCAACTTCAAGAGGAT
1 AAGACTTGTTCATTCAGTCTGCTC-CACTGCAACTTCAAGAGGAT
* * *
46875712 AAGACTTGTTTACTT-AGTCTGCACCACTGCAACTTC-AGGGAGAT
1 AAGACTTGTTCA-TTCAGTCTGCTCCACTGCAACTTCAAGAG-GAT
* * * * * *
46875756 AGGA-TT-ATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
1 AAGACTTGTTC--ATTCAGTCTGCTCCACTGCAACTTCAAGAGGAT
* * * *
46875800 AAGATTTG-CCATCTTCAGTCTGC-CTCACTGCAACTTCAGGAGAAT
1 AAGACTTGTTCA--TTCAGTCTGCTC-CACTGCAACTTCAAGAGGAT
* *
46875845 AAGACTTGCTT-ATTTAGTCTGCTCCACTGCAACTTC-AGGGAGAT
1 AAGACTTG-TTCATTCAGTCTGCTCCACTGCAACTTCAAGAG-GAT
46875889 AAGACT
1 AAGACT
46875895 AAATGCAATC
Statistics
Matches: 142, Mismatches: 25, Indels: 32
0.71 0.13 0.16
Matches are distributed among these distances:
42 1 0.01
43 9 0.06
44 90 0.63
45 41 0.29
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
AAGACTTGTTCATTCAGTCTGCTCCACTGCAACTTCAAGAGGAT
Found at i:46875867 original size:89 final size:88
Alignment explanation
Indices: 46875683--46876282 Score: 275
Period size: 89 Copynumber: 6.9 Consensus size: 88
46875673 TTGTTCATTC
* **
46875683 AGTCTGC-CGCACTGCAACTTCAAGAGGATAAGACTTGTTTACTTAGTCTGCACCACTGCAACTT
1 AGTCTGCTC-CACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCACCACTGCAACTT
* * *
46875747 CAGGGAGATAGGATTATCGGCTTT
65 CAGGGAGATAAGATTAGCGGATTT
* *
46875771 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGCCAT-CTTCAGTCTGC-CTCACTGCAAC
1 AGTCTGCTCCACTGCAACTTCAAGAAGATAAGACTTG-CATACTT-AGTCTGCAC-CACTGCAAC
**
46875834 TTCA-GGAGAATAAGACTT-GCTTATTT
63 TTCAGGGAG-ATAAGA-TTAGCGGATTT
* * ** * * *
46875860 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TAAATGC--AATCT--ACTCTCTGCAACTT
1 AGTCTGCTCCACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCAC-CACTGCAACTT
* * * *
46875920 CAGAGAGATAAGATCCA-AGGTTTT
65 CAGGGAGATAAGAT-TAGCGGATTT
* * * * * * * * *
46875944 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TT--ATCGGCTTTAATCTGCTCCACTGCAAT
1 AGTCTGCTCCACTGCAACTTCAAGAAGATAAGACTTGCAT--AC-TTAGTCTGCACCACTGCAAC
* * * ***
46876006 TTCAAGAAGATAAGATTTACCATCTTT
63 TTCAGGGAGATAAGA-TTAGCGGATTT
* * *
46876033 AGTCTGC-CTCACTGCAACTTC-AGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACT
1 AGTCTGCTC-CACTGCAACTTCAAGAAG-ATAAGACTTGCATACTTAGTCTGCACCACTGCAACT
* * * * *
46876096 TTAGAGAGATAAGACTA----AATG
64 TCAGGGAGATAAGATTAGCGGATTT
* * * * * * *
46876117 CGATCTGCT-CTCTGCAACTTC-AGAGAGATAAGA--TCCA-AGGTTTTAATCCGCTCCACTGCA
1 AG-TCTGCTCCACTGCAACTTCAAGA-AGATAAGACTTGCATA---CTTAGTCTGCACCACTGCA
* *
46876177 ACTTCAGGGAGATAAGATTTGC-CATCTT
61 ACTTCAGGGAGATAAGATTAGCGGAT-TT
* * *
46876205 CAGTCTGC-CTCACTGCAACTTC-AGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
1 -AGTCTGCTC-CACTGCAACTTCAAGAAG-ATAAGACTTGCATACTTAGTCTGCACCACTGCAAC
* *
46876268 TTTAGAGAGATAAGA
63 TTCAGGGAGATAAGA
46876283 CTAAATGCGA
Statistics
Matches: 391, Mismatches: 78, Indels: 85
0.71 0.14 0.15
Matches are distributed among these distances:
81 1 0.00
82 4 0.01
83 1 0.00
84 109 0.28
85 14 0.04
87 8 0.02
88 77 0.20
89 168 0.43
90 5 0.01
91 2 0.01
92 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (88 bp):
AGTCTGCTCCACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCACCACTGCAACTTC
AGGGAGATAAGATTAGCGGATTT
Found at i:46875963 original size:44 final size:44
Alignment explanation
Indices: 46875729--46876363 Score: 242
Period size: 44 Copynumber: 14.6 Consensus size: 44
46875719 GTTTACTTAG
* * * * * *
46875729 TCTGCACCACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAA
* *
46875773 TCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGCC-A--TCTTCAG
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGA--T-CCAAGGT-TTTAA
** * *
46875818 TCTGC-CTCACTGCAACTTCAG-GAGAATAAGA--CTTGCTTATTTAG
1 TCTGCTC-CACTGCAACTTCAGAGAG-ATAAGATCCAAG-GT-TTTAA
* * * **
46875862 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAA--ATGCAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
* *
46875903 TCTACT-CTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
* * * * * *
46875946 TCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAA
* ** *** *
46875990 TCTGCTCCACTGCAATTTCA-AGAAGATAAGATTTACCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGATCCAAGGT-TTTAA
** * *
46876035 TCTGC-CTCACTGCAACTTCAG-GAGAATAAGA--CTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGAGAG-ATAAGATCCAAGGTT--TTAA
* * * ***
46876079 TCTGCTCCACTGCAACTTTAGAGAGATAAGA-CTAA--ATGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
*
46876120 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
* * * *
46876163 TCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCC-A--TCTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-CCAAGGT-TTTAA
** * *
46876208 TCTGC-CTCACTGCAACTTCAG-GAGAATAAGA--CTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGAGAG-ATAAGATCCAAGGTT--TTAA
* * * ***
46876252 TCTGCTCCACTGCAACTTTAGAGAGATAAGA-CTAA--ATGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
* *
46876293 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
* *
46876336 TCCGCTCTACTGCAACTTCA-AGGAGATA
1 TCTGCTCCACTGCAACTTCAGA-GAGATA
46876364 GGATTATCGG
Statistics
Matches: 445, Mismatches: 91, Indels: 110
0.69 0.14 0.17
Matches are distributed among these distances:
40 68 0.15
41 27 0.06
42 2 0.00
43 29 0.07
44 217 0.49
45 97 0.22
46 3 0.01
47 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
Found at i:46875985 original size:217 final size:217
Alignment explanation
Indices: 46875735--46876195 Score: 841
Period size: 217 Copynumber: 2.1 Consensus size: 217
46875725 TTAGTCTGCA
46875735 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
1 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
* *
46875800 AAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTATTTAGTCT
66 AAGATTTACCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCT
*
46875865 GCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGAGATA
131 GCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGAGATA
46875930 AGATCCAAGGTTTTAATCCGCT
196 AGATCCAAGGTTTTAATCCGCT
*
46875952 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAGAT
1 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
*
46876017 AAGATTTACCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCT
66 AAGATTTACCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCT
* * *
46876082 GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
131 GCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGAGATA
46876147 AGATCCAAGGTTTTAATCCGCT
196 AGATCCAAGGTTTTAATCCGCT
*
46876169 CCACTGCAACTTCAGGGAGATAAGATT
1 CCACTGCAACTTCAGGGAGATAGGATT
46876196 TGCCATCTTC
Statistics
Matches: 235, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
217 235 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (217 bp):
CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
AAGATTTACCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCT
GCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGAGATA
AGATCCAAGGTTTTAATCCGCT
Found at i:46876036 original size:173 final size:171
Alignment explanation
Indices: 46875857--46876368 Score: 521
Period size: 173 Copynumber: 3.0 Consensus size: 171
46875847 GACTTGCTTA
* *
46875857 TTTAGTCTG-CTCCACTGCAACTTCAGG-GAGATAAGACTAAATGC-AATCTACT-CTCTGCAAC
1 TTTAGTCTGCCT-CACTGCAACTTCAGGAGA-ATAAGACTAAATACTAATCTACTCCACTGCAAC
* ** * * * *
46875918 TTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TATC
64 TTCAGAGAGATAAGA-CCAA--ATGCAATCCGCT-CACTGCAACTTCAGAGAGATAAGATCCA-A
* *
46875982 GGCTTTAATCTGCTCCACTGCAATTTCAAGAAGATAAGATTTACCATC
124 GGCTTTAATCCGCTCCACTGCAACTTCAAGAAGATAAGATTTACCATC
*** * *
46876030 TTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
1 TTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGAC-TAAATAC-TAATCTACTCCACTGCAAC
* * * * * *
46876095 TTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTT
64 TTCAGAGAGATAAGACCAAATGCAATCCGCTCACTGCAACTTCAGAGAGATAAGATCCAAGGCTT
* * *
46876160 TAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATC
129 TAATCCGCTCCACTGCAACTTCAAGAAGATAAGATTTACCATC
* *** * *
46876203 TTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
1 TTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGAC-TAAATAC-TAATCTACTCCACTGCAAC
* * * * * * *
46876268 TTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTCAAGGTTT
64 TTCAGAGAGATAAGACCAAATGCAATCCGCTCACTGCAACTTCAGAGAGATAAGATCCAAGGCTT
* * *
46876333 TAATCCGCTCTACTGCAACTTCAAGGAGATAGGATT
129 TAATCCGCTCCACTGCAACTTCAAGAAGATAAGATT
46876369 ATCGGCTTTA
Statistics
Matches: 302, Mismatches: 30, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
173 256 0.85
174 15 0.05
176 9 0.03
177 22 0.07
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (171 bp):
TTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTAAATACTAATCTACTCCACTGCAACTT
CAGAGAGATAAGACCAAATGCAATCCGCTCACTGCAACTTCAGAGAGATAAGATCCAAGGCTTTA
ATCCGCTCCACTGCAACTTCAAGAAGATAAGATTTACCATC
Found at i:46876170 original size:84 final size:83
Alignment explanation
Indices: 46876082--46876353 Score: 307
Period size: 84 Copynumber: 3.2 Consensus size: 83
46876072 TACTTAGTCT
46876082 GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
46876147 AGATCCAAGGTTTTAATCC
66 AGAT-CAAGGTTTTAATCC
* * * ** * *
46876166 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGCCTCACTGCAACTTCAG-
1 GCTCCACTGCAACTTTAGAGAGATAAGA-CT-AAATGC--GA-TCTG-CTCTCTGCAACTTCAGA
** * * *
46876229 GAGAATAAGA-CTTGCTTACTTAGTCT
60 GAG-ATAAGATCAAGGTT--TTAATCC
46876255 GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
46876320 AGATTCAAGGTTTTAATCC
66 AGA-TCAAGGTTTTAATCC
*
46876339 GCTCTACTGCAACTT
1 GCTCCACTGCAACTT
46876354 CAAGGAGATA
Statistics
Matches: 150, Mismatches: 25, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
84 66 0.44
85 9 0.06
86 7 0.05
87 7 0.05
88 9 0.06
89 52 0.35
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (83 bp):
GCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
AGATCAAGGTTTTAATCC
Found at i:46876254 original size:217 final size:217
Alignment explanation
Indices: 46875735--46876501 Score: 813
Period size: 217 Copynumber: 3.5 Consensus size: 217
46875725 TTAGTCTGCA
*
46875735 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
* *
46875800 AAGATTTGCCATCTTCAGTCTGC-CTCACTGCAACTTCAGGAGA-ATAAGACTTGCTTATTTAGT
66 AAGACTTGCCATCTT-AGTCTGCTC-CACTGCAACTTCAGGAGAGATAAGACTTGCTTACTTAGT
* *
46875863 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGAGA
129 CTGCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGA
46875928 TAAGATCCAAGGTTTTAATCCGCT
194 TAAGATCCAAGGTTTTAATCCGCT
* *
46875952 CCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
* *
46876017 AAGATTTACCATCTTTAGTCTGC-CTCACTGCAACTTCAGGAGA-ATAAGACTTGCTTACTTAGT
66 AAGACTTGCCATC-TTAGTCTGCTC-CACTGCAACTTCAGGAGAGATAAGACTTGCTTACTTAGT
* *
46876080 CTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGA
129 CTGCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGA
46876145 TAAGATCCAAGGTTTTAATCCGCT
194 TAAGATCCAAGGTTTTAATCCGCT
* * *
46876169 CCACTGCAACTTCAGGGAGATAAGATT-T-GCCATCTTCAGTCTGC-CTCACTGCAACTTC-AGG
1 CCACTGCAACTTCAGGGAGATAAGATTATCGGC-T-TT-AATCTGCTC-CACTGCAACTTCAAGA
* * *** *
46876230 AGAATAAGACTTG-CTTACTTAGTCTGCTCCACTGCAACTTTA-GAGAGATAAGAC-TAAATGC-
62 AG-ATAAGACTTGCCAT-CTTAGTCTGCTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTACT
* * * * ** *
46876291 GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCTACTGCAACTT
125 TAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT-AA--ATGCAATCTGCTCT-CTGCAACTT
* * * * ***
46876354 CA-AGGAGATAGGAT-TATCGGCTTTAATATTCT
186 CAGA-GAGATAAGATCCA-AGGTTTTAATCCGCT
* * * * *
46876386 CTACTGCAACTTCAGGGAAATAAGATT-T-GACATCTTCAATCTGC-CTCACTGCAACTTTAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTATCGGC-T-TT-AATCTGCTC-CACTGCAACTTCAAGA
* *
46876448 GGATAAGACTTG--ATTGCTTAGTTTGCTCCACTGCAACTTCAGG-GAGATAAGACT
62 AGATAAGACTTGCCA-T-CTTAGTCTGCTCCACTGCAACTTCAGGAGAGATAAGACT
46876502 AAATGCAATC
Statistics
Matches: 483, Mismatches: 48, Indels: 37
0.85 0.08 0.07
Matches are distributed among these distances:
213 23 0.05
214 8 0.02
215 3 0.01
216 20 0.04
217 397 0.82
218 32 0.07
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (217 bp):
CCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGAT
AAGACTTGCCATCTTAGTCTGCTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTACTTAGTCT
GCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATA
AGATCCAAGGTTTTAATCCGCT
Found at i:46876438 original size:173 final size:172
Alignment explanation
Indices: 46875955--46876457 Score: 662
Period size: 173 Copynumber: 2.9 Consensus size: 172
46875945 ATCCGCTCCA
* * * * * * *
46875955 CTGCAACTTCAGGGAGATAGGATT-ATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAGATAA
1 CTGCAACTTCAGAGAGATAAGATTCA-AGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAA
* **
46876019 GATTTACCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGC
65 GA-TTATCGCCTTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGC
46876084 TCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
129 TCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
* *
46876128 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAG
46876193 ATT-T-GCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTG
66 ATTATCGCC-T-TT-AGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTG
46876256 CTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
128 CTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
* *
46876301 CTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCTACTGCAACTTCAAGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAG
* * * * * * *
46876366 ATTATCGGCTTTAATAT-TCTCTACTGCAACTTCAGG-GAAATAAGATTTGACAT-CTTCAATCT
66 ATTATCGCCTTTAGTCTGCCTC-ACTGCAACTTCAGGAG-AATAAGACTTG-CTTACTT-AGTCT
46876428 GC-CTCACTGCAACTTTAG-GAGGATAAGACT
127 GCTC-CACTGCAACTTTAGAGA-GATAAGACT
46876458 TGATTGCTTA
Statistics
Matches: 295, Mismatches: 23, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
170 1 0.00
171 5 0.02
172 37 0.13
173 247 0.84
174 3 0.01
175 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (172 bp):
CTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAG
ATTATCGCCTTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTC
CACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
Found at i:46876457 original size:390 final size:390
Alignment explanation
Indices: 46875768--46876586 Score: 1302
Period size: 390 Copynumber: 2.1 Consensus size: 390
46875758 GATTATCGGC
* * *
46875768 TTTAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
* *
46875833 CTTCAGGAGAATAAGACTTGCTTATTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAAA
66 CTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAA
46875898 TGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
131 TGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
* * *
46875963 TCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAGATAAGATTTACCA
196 TCAAGGAGATAGGATTATCGGCTTTAATATGCTCCACTGCAACTTCAAGAAGATAAGATTTACCA
* * *
46876028 TCTTTAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCA
261 TCTTCAATCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGATTACTTAGTCTGCTCCACTGCA
* *
46876093 ACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-CAAGG
326 ACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCGCAA-G
46876157 T
390 T
46876158 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
*
46876223 CTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAA
66 CTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAA
* * * *
46876288 TGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCGCTCTACTGCAACT
131 TGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
* * *
46876353 TCAAGGAGATAGGATTATCGGCTTTAATATTCTCTACTGCAACTTCAGGGAA-ATAAGATTTGA-
196 TCAAGGAGATAGGATTATCGGCTTTAATATGCTCCACTGCAACTTCA-AGAAGATAAGATTT-AC
* * * *
46876416 CATCTTCAATCTGCCTCACTGCAACTTTAGGAGGATAAGACTTGATTGCTTAGTTTGCTCCACTG
259 CATCTTCAATCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGATTACTTAGTCTGCTCCACTG
* * *
46876481 CAACTTCAGGGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATAATATCTGTA
324 CAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-GCA
*
46876546 ATT
388 AGT
* *
46876549 TTTAACCCACTCCACTGCAACTTCAGGGAGATAAGATT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT
46876587 ACTGGCTACC
Statistics
Matches: 394, Mismatches: 31, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
390 351 0.89
391 41 0.10
392 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (390 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
CTTCAGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAA
TGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
TCAAGGAGATAGGATTATCGGCTTTAATATGCTCCACTGCAACTTCAAGAAGATAAGATTTACCA
TCTTCAATCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGATTACTTAGTCTGCTCCACTGCA
ACTTCAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCGCAAGT
Found at i:46876503 original size:217 final size:218
Alignment explanation
Indices: 46876171--46876587 Score: 640
Period size: 217 Copynumber: 1.9 Consensus size: 218
46876161 AATCCGCTCC
* * *
46876171 ACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATA
1 ACTGCAACTTCAGGGAAATAAGATTTGACATCTTCAATCTGCCTCACTGCAACTTCAGGAGAATA
* * *
46876236 AGACTTGCTTACTTAGTCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCT
66 AGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCT
* * *
46876301 CTGCAACTTCAGAGAGATAAGAT-T-CAAGGTTTTAATCCGCTCTACTGCAACTTCAAGGAGATA
131 CTGCAACTTCAGAGAGATAAGATCTGCAA-GTTTTAACCCACTCCACTGCAACTTCAAGGAGATA
*
46876364 GGATTATCGGCTTTAATATTCTCT
195 AGATTATCGGCTTTAATATTCTCT
* *
46876388 ACTGCAACTTCAGGGAAATAAGATTTGACATCTTCAATCTGCCTCACTGCAACTTTAGGAGGATA
1 ACTGCAACTTCAGGGAAATAAGATTTGACATCTTCAATCTGCCTCACTGCAACTTCAGGAGAATA
* * *
46876453 AGACTTGATTGCTTAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCAATCTGCTCT
66 AGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCT
* * * *
46876518 CTGCAACTTCAGAGAGATAATATCTGTAATTTTTAACCCACTCCACTGCAACTTCAGGGAGATAA
131 CTGCAACTTCAGAGAGATAAGATCTGCAAGTTTTAACCCACTCCACTGCAACTTCAAGGAGATAA
46876583 GATTA
196 GATTA
46876588 CTGGCTACCG
Statistics
Matches: 179, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
217 141 0.79
218 36 0.20
219 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (218 bp):
ACTGCAACTTCAGGGAAATAAGATTTGACATCTTCAATCTGCCTCACTGCAACTTCAGGAGAATA
AGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAAATGCAATCTGCTCT
CTGCAACTTCAGAGAGATAAGATCTGCAAGTTTTAACCCACTCCACTGCAACTTCAAGGAGATAA
GATTATCGGCTTTAATATTCTCT
Found at i:46888478 original size:15 final size:15
Alignment explanation
Indices: 46888442--46888480 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
46888432 GCAAATATTG
*
46888442 TGATAACAAATACAA
1 TGATAATAAATACAA
46888457 T-AGTAATAAATACAA
1 TGA-TAATAAATACAA
46888472 TGATAATAA
1 TGATAATAA
46888481 TTTTAACGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.26
Consensus pattern (15 bp):
TGATAATAAATACAA
Found at i:46892298 original size:16 final size:16
Alignment explanation
Indices: 46892277--46892322 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
46892267 AAATGGGTTG
46892277 AGAAAATTATTTAATT
1 AGAAAATTATTTAATT
*
46892293 AGAAAATTAATTAATT
1 AGAAAATTATTTAATT
46892309 --AAAATTAATTTAAT
1 AGAAAATT-ATTTAAT
46892323 AACTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 6 0.22
16 15 0.56
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
AGAAAATTATTTAATT
Found at i:46894017 original size:24 final size:24
Alignment explanation
Indices: 46893988--46894049 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
46893978 TCGAAGAAGT
** **
46893988 TGATAGTAATAGTGGGAGTTATGA
1 TGATAGTAATAGTGCAAACTATGA
46894012 TGATAGTAATAGTGCAAACTATGA
1 TGATAGTAATAGTGCAAACTATGA
*
46894036 TGATAGTGATAGTG
1 TGATAGTAATAGTG
46894050 AACTTTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.32
Consensus pattern (24 bp):
TGATAGTAATAGTGCAAACTATGA
Found at i:46895051 original size:42 final size:42
Alignment explanation
Indices: 46894932--46895052 Score: 215
Period size: 42 Copynumber: 2.9 Consensus size: 42
46894922 CAAACAAAAA
*
46894932 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* *
46894974 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
46895016 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
46895053 ACAAAAACGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:46900989 original size:9 final size:9
Alignment explanation
Indices: 46900975--46901180 Score: 109
Period size: 9 Copynumber: 24.2 Consensus size: 9
46900965 TTTTTATGTA
46900975 TTATGTAAG
1 TTATGTAAG
46900984 TTATGTAAG
1 TTATGTAAG
*
46900993 TTATGT--C
1 TTATGTAAG
46901000 TTATGT-A-
1 TTATGTAAG
46901007 TTATGTAAG
1 TTATGTAAG
46901016 -TACTGTAAG
1 TTA-TGTAAG
*
46901025 TAATGTAAG
1 TTATGTAAG
46901034 TTATGTAAG
1 TTATGTAAG
* * *
46901043 -AAAGTTA-
1 TTATGTAAG
46901050 TTATGTAAG
1 TTATGTAAG
*
46901059 TTGTGTATA-
1 TTATGTA-AG
*
46901068 ATAT-TAA-
1 TTATGTAAG
*
46901075 TTATGTGAG
1 TTATGTAAG
**
46901084 TCGTGT-A-
1 TTATGTAAG
*
46901091 TAATGTAAG
1 TTATGTAAG
*
46901100 TTAAG-AAGG
1 TTATGTAA-G
46901109 TTATGT-A-
1 TTATGTAAG
*
46901116 TAATGTAAG
1 TTATGTAAG
46901125 TTATGTAAG
1 TTATGTAAG
* * *
46901134 TAATTTAAT
1 TTATGTAAG
46901143 TTATGTAAG
1 TTATGTAAG
46901152 TTATGTAAG
1 TTATGTAAG
* *
46901161 TTATTTAAT
1 TTATGTAAG
*
46901170 TTATGTCAG
1 TTATGTAAG
46901179 TT
1 TT
46901181 TCTATATATG
Statistics
Matches: 147, Mismatches: 34, Indels: 32
0.69 0.16 0.15
Matches are distributed among these distances:
7 25 0.17
8 20 0.14
9 100 0.68
10 2 0.01
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:46901004 original size:32 final size:32
Alignment explanation
Indices: 46900968--46901030 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
46900958 TGATATATTT
*
46900968 TTATGTATTATGTAAGTTA-TGTAAGTTATGTC
1 TTATGTATTATGTAAG-TACTGTAAGTAATGTC
46901000 TTATGTATTATGTAAGTACTGTAAGTAATGT
1 TTATGTATTATGTAAGTACTGTAAGTAATGT
46901031 AAGTTATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (32 bp):
TTATGTATTATGTAAGTACTGTAAGTAATGTC
Found at i:46901297 original size:22 final size:21
Alignment explanation
Indices: 46901251--46901302 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
46901241 AGTGGTGTAT
* * *
46901251 TAAGTTATGGAAGTTATTATG
1 TAAGTTATGCAAGTTATAATA
46901272 TAAGTTATGCAAGATTATAATA
1 TAAGTTATGCAAG-TTATAATA
46901294 TAAGTTATG
1 TAAGTTATG
46901303 TATTATGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
TAAGTTATGCAAGTTATAATA
Found at i:46901316 original size:8 final size:7
Alignment explanation
Indices: 46901298--46901335 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
46901288 ATAATATAAG
46901298 TTATGTA
1 TTATGTA
46901305 TTATGTTA
1 TTATG-TA
46901313 TTATGTA
1 TTATGTA
46901320 TTATGTA
1 TTATGTA
46901327 --ATGTA
1 TTATGTA
46901332 TTAT
1 TTAT
46901336 CAGATTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (7 bp):
TTATGTA
Found at i:46901316 original size:27 final size:26
Alignment explanation
Indices: 46901283--46901355 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
46901273 AAGTTATGCA
*
46901283 AGATTATAATATAAGTTATGTATTATG
1 AGATTAT-ATATAAGTTATGTATTATC
** * * *
46901310 TTATTATGTATTATGTAATGTATTATC
1 AGATTATATA-TAAGTTATGTATTATC
46901337 AGATTATATATAAGTTATG
1 AGATTATATATAAGTTATG
46901356 AAAGTTATTA
Statistics
Matches: 34, Mismatches: 11, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (26 bp):
AGATTATATATAAGTTATGTATTATC
Found at i:46901372 original size:21 final size:22
Alignment explanation
Indices: 46901347--46901432 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 22
46901337 AGATTATATA
46901347 TAAGTTATGA-AAGTTATTATG
1 TAAGTTATGATAAGTTATTATG
* *
46901368 TAAGTTAT-ACAAGCTTA-TATA
1 TAAGTTATGATAAG-TTATTATG
*
46901389 TAAGTTATGTATTATGTTATTATG
1 TAAGTTATG-A-TAAGTTATTATG
*
46901413 T-A-TTATG-TAATTTATTATG
1 TAAGTTATGATAAGTTATTATG
46901432 T
1 T
46901433 TATTATATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
19 11 0.21
20 1 0.02
21 22 0.42
22 8 0.15
23 5 0.09
24 6 0.11
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (22 bp):
TAAGTTATGATAAGTTATTATG
Found at i:46901391 original size:42 final size:42
Alignment explanation
Indices: 46901340--46901483 Score: 119
Period size: 50 Copynumber: 3.2 Consensus size: 42
46901330 TATTATCAGA
46901340 TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
1 TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
* * * *
46901382 TTATATATAAGTTATGTATTATGTTATTATGTATTATGTAATTTATTATG-
1 TTATATATAAGTTATG-A--AAGTTATTATGTA--A-GT--TATA-CAAGC
* *
46901432 TTATTATATATACGTTATGGAAGTTATTATGTAAGTTATGCAAGC
1 TTA-TATATA-A-GTTATGAAAGTTATTATGTAAGTTATACAAGC
46901477 TTATATA
1 TTATATA
46901484 CCAATTATGC
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
42 16 0.20
43 1 0.01
44 6 0.08
45 17 0.22
47 3 0.04
48 3 0.04
50 18 0.23
51 8 0.10
52 1 0.01
53 6 0.08
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.47
Consensus pattern (42 bp):
TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
Found at i:46901411 original size:8 final size:7
Alignment explanation
Indices: 46901393--46901438 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
46901383 TATATATAAG
46901393 TTATGTA
1 TTATGTA
46901400 TTATGTTA
1 TTATG-TA
46901408 TTATGTA
1 TTATGTA
46901415 TTATGTA
1 TTATGTA
*
46901422 --ATTTA
1 TTATGTA
46901427 TTATGTTA
1 TTATG-TA
46901435 TTAT
1 TTAT
46901439 ATATACGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:46901412 original size:95 final size:95
Alignment explanation
Indices: 46901251--46901517 Score: 401
Period size: 95 Copynumber: 2.8 Consensus size: 95
46901241 AGTGGTGTAT
*
46901251 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGATTATAATATAAGTTATGTATTATGTTATTA
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTAT-ATATAAGTTATGTATTATGTTATTA
46901316 TGTATTATGTAATGTATTATCAGATTATATA
65 TGTATTATGTAATGTATTATCAGATTATATA
* *
46901347 TAAGTTATGAAAGTTATTATGTAAGTTATACAAGCTTATATATAAGTTATGTATTATGTTATTAT
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATATAAGTTATGTATTATGTTATTAT
* ***
46901412 GTATTATGTAATTTATTATGTTATTATATA
66 GTATTATGTAATGTATTATCAGATTATATA
* * * *
46901442 TACGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATACCAA-TTATGCATTGTGTTATTA
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATA-TAAGTTATGTATTATGTTATTA
*
46901506 TGTATTAAGTAA
65 TGTATTATGTAA
46901518 GCAAATGATT
Statistics
Matches: 156, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
95 118 0.76
96 38 0.24
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (95 bp):
TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATATAAGTTATGTATTATGTTATTAT
GTATTATGTAATGTATTATCAGATTATATA
Found at i:46901413 original size:15 final size:15
Alignment explanation
Indices: 46901393--46901438 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
46901383 TATATATAAG
46901393 TTATGTATTATGTTA
1 TTATGTATTATGTTA
46901408 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
46901422 --ATTTATTATGTTA
1 TTATGTATTATGTTA
46901435 TTAT
1 TTAT
46901439 ATATACGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:46901671 original size:20 final size:20
Alignment explanation
Indices: 46901610--46901676 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
46901600 TATGTATATT
* **
46901610 AAAAAATATATATCTTATAGA
1 AAAAAATATATA-ATTATTTA
*
46901631 AATAAAATATTTAAATT-TTTA
1 AA-AAAATATAT-AATTATTTA
46901652 AAAAAATATATAATTATTTA
1 AAAAAATATATAATTATTTA
46901672 CAAAA
1 -AAAA
46901677 CGTGTAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
19 4 0.11
20 12 0.32
21 10 0.27
22 10 0.27
23 1 0.03
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (20 bp):
AAAAAATATATAATTATTTA
Found at i:46901754 original size:61 final size:61
Alignment explanation
Indices: 46901663--46901810 Score: 174
Period size: 61 Copynumber: 2.4 Consensus size: 61
46901653 AAAAATATAT
* * * *
46901663 AATTATTTACAAAACGTGTAAAATTGATACTTA-TAAA-TTTTATTAATAATAAATCTAGAAC
1 AATTATTTACAAAACTTATAAATTTAATAC-TACTAAATTTTTA-TAATAATAAATCTAGAAC
* * * * * *
46901724 ACTTTTTTAGAAAACTTATAAATTTAATACTACTAAATTTTTATACTAATAAATTTAGAAT
1 AATTATTTACAAAACTTATAAATTTAATACTACTAAATTTTTATAATAATAAATCTAGAAC
46901785 AATTATTTACAAAACTTATAAATTTA
1 AATTATTTACAAAACTTATAAATTTA
46901811 GAAAACTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
60 2 0.03
61 65 0.90
62 5 0.07
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (61 bp):
AATTATTTACAAAACTTATAAATTTAATACTACTAAATTTTTATAATAATAAATCTAGAAC
Found at i:46901762 original size:15 final size:15
Alignment explanation
Indices: 46901741--46901780 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
46901731 TAGAAAACTT
46901741 ATAAATTTAATACTA
1 ATAAATTTAATACTA
* *
46901756 CTAAATTTTTATACTA
1 ATAAA-TTTAATACTA
46901772 ATAAATTTA
1 ATAAATTTA
46901781 GAATAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:46901815 original size:17 final size:17
Alignment explanation
Indices: 46901789--46901821 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
46901779 TAGAATAATT
46901789 ATTTACAAAACTTATAA
1 ATTTACAAAACTTATAA
*
46901806 ATTTAGAAAACTTATA
1 ATTTACAAAACTTATA
46901822 TAGAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (17 bp):
ATTTACAAAACTTATAA
Found at i:46903517 original size:22 final size:20
Alignment explanation
Indices: 46903463--46903502 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
46903453 AAGAGATGAA
46903463 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
46903483 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
46903503 TAGAAAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.45, T:0.10
Consensus pattern (20 bp):
GAAAGGATGAGGGGAAATCG
Found at i:46906706 original size:114 final size:112
Alignment explanation
Indices: 46906450--46906707 Score: 315
Period size: 113 Copynumber: 2.3 Consensus size: 112
46906440 TATCCCAATA
* * * * *
46906450 TTTTGCGGCGTTTTTTAATAAGCGCCACTAACTCTAATCTACCTCAAGACCAAACGGTGCGTTTT
1 TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTT
** * *
46906515 GGTTAAGATATTTGCGGCGCTTTTTGTAATACGCCGCTAATACTGTT
66 GGTTAAGATATTTGCGGCGCTTCATATAATACGCCACTAATACTGTT
* **
46906562 TTTTAGCGGCGTTTTCTCGTAAACGCCACTAA-TACTAATATACCTCAAAACCAAACGCTGCGTT
1 TTTTA-CGGCGTTTTTTAATAAACGCCACTAACT-CTAATATACCTCAAAACCAAACGCTGCGTT
*
46906626 TTGGTTAAGGTATTTTGCGGCGCTTACATATAA-ACGCCACTAATGA-TGTT
64 TTGGTTAAGATA-TTTGCGGCGCTT-CATATAATACGCCACTAAT-ACTGTT
*
46906676 CTTTTACGGCGTTTTTTAAAAAACGCCACTAA
1 -TTTTACGGCGTTTTTTAATAAACGCCACTAA
46906708 ATGTTTAGGT
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
112 5 0.04
113 60 0.49
114 48 0.39
115 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (112 bp):
TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTT
GGTTAAGATATTTGCGGCGCTTCATATAATACGCCACTAATACTGTT
Found at i:46919517 original size:16 final size:17
Alignment explanation
Indices: 46919496--46919534 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
46919486 ATATATGAAG
46919496 ATTATTATTTA-AAATT
1 ATTATTATTTATAAATT
*
46919512 ATTATT-TTTATAATTT
1 ATTATTATTTATAAATT
46919528 ATTATTA
1 ATTATTA
46919535 AAATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTATTATTTATAAATT
Found at i:46927577 original size:28 final size:28
Alignment explanation
Indices: 46927529--46927582 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
46927519 TGGCCATGCC
46927529 ATGGTCTTACACTCATAATGCCATAGTT
1 ATGGTCTTACACTCATAATGCCATAGTT
46927557 ATGGTCTTATCA-TCA-AGATGCCATAG
1 ATGGTCTTA-CACTCATA-ATGCCATAG
46927583 CCCAACTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.04
28 21 0.88
29 2 0.08
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (28 bp):
ATGGTCTTACACTCATAATGCCATAGTT
Found at i:46927716 original size:106 final size:101
Alignment explanation
Indices: 46927553--46927739 Score: 250
Period size: 106 Copynumber: 1.8 Consensus size: 101
46927543 ATAATGCCAT
* * * * *
46927553 AGTTATGGTCTTATCATCAAGATGCCATAGCCCAACTATGGTCTTACACGTATACATTTACTGCC
1 AGTTATGGTCTTATCATAAAAATACCATAGCCCAAATATGGTCTTACACGTAAACA-TT--T-CC
46927618 ATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
62 ATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
* *
46927658 AGTTATGGTCTTTTCATTAAAAATACCATAGCCCAAATATGGTCTTACA-TTCAAACATTTCCAT
1 AGTTATGGTCTTATCA-TAAAAATACCATAGCCCAAATATGGTCTTACACGT-AAACATTTCCAT
46927722 GGTCCAACCATGGTCTTA
64 GGTCCAACCATGGTCTTA
46927740 TCTATCAATT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
102 22 0.30
103 1 0.01
105 18 0.25
106 32 0.44
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (101 bp):
AGTTATGGTCTTATCATAAAAATACCATAGCCCAAATATGGTCTTACACGTAAACATTTCCATGG
TCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
Found at i:46928856 original size:53 final size:53
Alignment explanation
Indices: 46928795--46928896 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
46928785 TTTCTAACAA
* *
46928795 AATTTTAATATTAACTCCATGACACTCCGTATTCATATACTAAGTTGGTCTAG
1 AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGTCTAG
**
46928848 AATTTTAATACTAACTCAATGACACTTTGTATTCATATACTAAGTTGGT
1 AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGT
46928897 TTTAAATTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (53 bp):
AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGTCTAG
Found at i:46935894 original size:20 final size:20
Alignment explanation
Indices: 46935869--46935913 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
46935859 AATATATAAA
*
46935869 TTTGAAATTTCTATAAA-TAT
1 TTTGAAATTT-TAAAAATTAT
46935889 TTTG-AATTTTAAAAATTAT
1 TTTGAAATTTTAAAAATTAT
46935908 TTTGAA
1 TTTGAA
46935914 TTATTTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.23
19 12 0.55
20 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTGAAATTTTAAAAATTAT
Found at i:46936952 original size:43 final size:43
Alignment explanation
Indices: 46936891--46937051 Score: 232
Period size: 43 Copynumber: 3.7 Consensus size: 43
46936881 CGCTACTGAC
* * *
46936891 AACGCCGCTAAAGGTCATGTTCTTTAGCGACGCTTTTTCAACA
1 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
*
46936934 AACGCCGCTAAAGATCATGTTCCTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
* *
46936977 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCTTCCGCA
1 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
* * *
46937020 AATGCCACTAAAGGTCATGTTCTTTTAGCGGC
1 AACGCCGCTAAAGATCATGTTC-TTTAGCGGC
46937052 ATTTGTGTTG
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 98 0.92
44 9 0.08
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (43 bp):
AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
Found at i:46943247 original size:6 final size:7
Alignment explanation
Indices: 46943227--46943261 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
46943217 CTATAAAAAA
46943227 CTAAACC
1 CTAAACC
46943234 CTAAACC
1 CTAAACC
46943241 C-AAACC
1 CTAAACC
46943247 CTAAACC
1 CTAAACC
*
46943254 GTAAACC
1 CTAAACC
46943261 C
1 C
46943262 CAAATCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.43, C:0.43, G:0.03, T:0.11
Consensus pattern (7 bp):
CTAAACC
Found at i:46943247 original size:13 final size:13
Alignment explanation
Indices: 46943229--46943253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46943219 ATAAAAAACT
46943229 AAACCCTAAACCC
1 AAACCCTAAACCC
46943242 AAACCCTAAACC
1 AAACCCTAAACC
46943254 GTAAACCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.44, G:0.00, T:0.08
Consensus pattern (13 bp):
AAACCCTAAACCC
Found at i:46944167 original size:115 final size:112
Alignment explanation
Indices: 46943961--46944337 Score: 486
Period size: 114 Copynumber: 3.3 Consensus size: 112
46943951 GAAAAATAAT
* * * * *
46943961 TTTTTTACGGCGCTTTCCCAAAAACGCCGCTAAATCCTAAAGCATTAGCGGCGCTGTATTAAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAACCCT-AAGCATTAGCGGCGCTTTCTTAAAAA
* *
46944026 CGCCGCTAAATCCCCCGAAAGGTCAGAAAACGGCGTCGTTGGGCTTATG
65 CGCCGCTAAAT-CCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
*
46944075 TCTTTTTGCGGCGCTTTAC-CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
1 T-TTTTTGCGGCGCTTT-CTCAAAAACGCCGCTAAA-CCCTAAGCATTAGCGGCGCTTTCTTAAA
*
46944139 AACGCCACTAAATCCCCGAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
63 AACGCCGCTAAATCCCCG-AAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* * * * *
46944190 TTTTTTTCGGTGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCCTAAAAAA
1 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA-CCCTAAGCATTAGCGGCGCTTTCTTAAAAA
* * * * *
46944255 CACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCATTGGGGTTAGG
65 CGCCGCTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* *
46944303 TTTTTTTGCGGCGCTTTCTCAAAATCACCGCTAAA
1 -TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
46944338 TCCCCGAATG
Statistics
Matches: 232, Mismatches: 25, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
113 29 0.12
114 105 0.45
115 94 0.41
116 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (112 bp):
TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAACCCTAAGCATTAGCGGCGCTTTCTTAAAAAC
GCCGCTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
Found at i:46944241 original size:114 final size:114
Alignment explanation
Indices: 46943960--46944340 Score: 514
Period size: 115 Copynumber: 3.3 Consensus size: 114
46943950 AGAAAAATAA
* * * *
46943960 TTTTTTTACGGCGCTTTCCCAAAAACGCCGCTAAATCCTAAAGCATTAGCGGCGCTGTATTAAAA
1 TTTTTTTACGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTTCTTAAAA
* *
46944025 ACGCCGCTAAATCCCCCGAAAGGTCAGAAAACGGCGTCGTTGGGCTTATG
66 ACGCCGCTAAAT-CCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* * * * *
46944075 TCTTTTTGCGGCGCTTTAC-CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
1 TTTTTTTACGGCGCTTT-CTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTTCTTAAA
*
46944139 AACGCCACTAAATCCCCGAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
65 AACGCCGCTAAATCCCCG-AAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* * *
46944190 TTTTTTT-CGGTGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCCTAAAAA
1 TTTTTTTACGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTTCTTAAAA
* * * * *
46944254 ACACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCATTGGGGTTAGG
66 ACGCCGCTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* * *
46944303 TTTTTTTGCGGCGCTTTCTCAAAATCACCGCTAAATCC
1 TTTTTTTACGGCGCTTTCTCAAAAACGCCGCTAAATCC
46944341 CCGAATGCTC
Statistics
Matches: 235, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
113 36 0.15
114 96 0.41
115 102 0.43
116 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (114 bp):
TTTTTTTACGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTTCTTAAAA
ACGCCGCTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
Found at i:46944337 original size:73 final size:72
Alignment explanation
Indices: 46944237--46944409 Score: 274
Period size: 73 Copynumber: 2.4 Consensus size: 72
46944227 TTAAGCATTA
* * * *
46944237 GCGGCGCTTCCTAAAAAACACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCATTGGGGTTAG
1 GCGGCGCTTTCTCAAAAACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
46944302 GTTTTTTT
66 G-TTTTTT
*
46944310 GCGGCGCTTTCTCAAAATCACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
46944375 GTTTTTT
66 GTTTTTT
**
46944382 GCGGCGCTTTCTCAAAAACGTCGCTAAA
1 GCGGCGCTTTCTCAAAAACACCGCTAAA
46944410 ACCCTGAGCA
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 31 0.34
73 61 0.66
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (72 bp):
GCGGCGCTTTCTCAAAAACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
GTTTTTT
Found at i:46944380 original size:186 final size:186
Alignment explanation
Indices: 46944123--46944569 Score: 660
Period size: 186 Copynumber: 2.4 Consensus size: 186
46944113 CTGAGCATTA
* * * *
46944123 GCGGCGCTTTCTTAAAAACGCCACTAAATCCCCGAAAAGATCAGAAAACGGCGTCGTTGGGCTTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCG-AATGCTCAGAAAACGGCGTCGTTGGGCTTA
* * * **
46944188 GGTTTTTTTCGGTGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCCTAAAA
65 GGTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAA
* * *
46944253 AACACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCATTGGGGTTAGGTTTTTTT
130 AACACCACTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
* * * *
46944310 GCGGCGCTTTCTCAAAATCACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * * *
46944375 GTTTTTTGCGGCGCTTTCTCAAAAACGTCGCTAAAACCCTGAGCATTAGCAACGCTTCCTCAAAA
66 GTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAAA
* *
46944440 ACGCCACTAAATCCCCGAATGCTCAGAAAACAGTGTCATTGGGCTTAGGTTTTTTT
131 ACACCACTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
* *
46944496 GCGACGCTTTCTCAAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGAGCTTA
1 GCGGCGCTTTCTC-AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTA
46944561 GGTTTTTTT
65 GGTTTTTTT
46944570 GTGGCGTTTT
Statistics
Matches: 230, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
186 146 0.63
187 84 0.37
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (186 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAAA
ACACCACTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
Found at i:46944524 original size:74 final size:73
Alignment explanation
Indices: 46944426--46944681 Score: 298
Period size: 85 Copynumber: 3.3 Consensus size: 73
46944416 AGCATTAGCA
* * *
46944426 ACGCTTCCTCAAAAACGCCACTAAATCCCCGAATGCTCAGAAAACAGTGTCATTGGGCTTAGGTT
1 ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
46944491 TTTTTGCG
66 TTTTTGCG
* * *
46944499 ACGCTTTCTCAAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGAGCTTAGGT
1 ACGCTTCCTC-AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGG-
46944564 TTTTTTGTGGCGTTTTTGGCG
64 -----T-T----TTTTT-GCG
* *
46944585 GCGCTTCCTCAAAAATGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGG-T
1 ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
46944649 TTTTTGCG
66 TTTTTGCG
* *
46944657 GCGCTTTCTCAAAAACGCCGCTAAA
1 ACGCTTCCTCAAAAACGCCGCTAAA
46944682 GCCCTGAACA
Statistics
Matches: 157, Mismatches: 13, Indels: 27
0.80 0.07 0.14
Matches are distributed among these distances:
72 26 0.17
73 14 0.09
74 48 0.31
77 1 0.01
80 1 0.01
81 1 0.01
85 55 0.35
86 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (73 bp):
ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
TTTTTGCG
Found at i:46944785 original size:113 final size:113
Alignment explanation
Indices: 46944582--46944793 Score: 370
Period size: 113 Copynumber: 1.9 Consensus size: 113
46944572 GGCGTTTTTG
* *
46944582 GCGGCGCTTCCTCAAAAATGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
46944647 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
* *
46944695 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
**
46944760 GTTTTTTGCGGCGCTTTCTGGAAAACGCCGCTAA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
46944794 TGCTTATTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 93 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (113 bp):
GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
Found at i:46951644 original size:3 final size:3
Alignment explanation
Indices: 46951630--46951667 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
46951620 CGACCATGAA
*
46951630 GAG GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
46951668 AGCGTGAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:46953003 original size:27 final size:28
Alignment explanation
Indices: 46952963--46953045 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 28
46952953 CATTTTATTT
*
46952963 AAAAATTAAAATACTTTAGAAATTTA-G
1 AAAAATTATAATACTTTAGAAATTTATG
* * *
46952990 AAAAATTATTATACATTATTAATATGTTATG
1 AAAAATTATAATACTTTA-GAA-AT-TTATG
*
46953021 AAAATATTATAATATTTTAGAAATT
1 AAAA-ATTATAATACTTTAGAAATT
46953046 ATATAGAATA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
27 15 0.35
28 2 0.05
29 3 0.07
30 5 0.12
31 7 0.16
32 11 0.26
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (28 bp):
AAAAATTATAATACTTTAGAAATTTATG
Found at i:46953033 original size:21 final size:21
Alignment explanation
Indices: 46953004--46953043 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
46952994 ATTATTATAC
46953004 ATTATTAATATGTTATGAAAAT
1 ATTATTAATATGTTA-GAAAAT
*
46953026 ATTA-TAATATTTTAGAAA
1 ATTATTAATATGTTAGAAA
46953044 TTATATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTAATATGTTAGAAAAT
Found at i:46953050 original size:19 final size:20
Alignment explanation
Indices: 46952971--46953090 Score: 65
Period size: 19 Copynumber: 6.2 Consensus size: 20
46952961 TTAAAAATTA
* *
46952971 AAATACTTTAGAAATT-TAG
1 AAATATTTTAGAAATTATAT
* * *
46952990 AAAAATTATTATACATTAT-T
1 AAATATT-TTAGAAATTATAT
* *
46953010 -AATATGTTATGAAAATAT-T
1 AAATATTTTA-GAAATTATAT
46953029 ATAATATTTTAGAAATTATAT
1 A-AATATTTTAGAAATTATAT
* *
46953050 AGAATATTATA-AAACTATAT
1 A-AATATTTTAGAAATTATAT
*
46953070 AAATATTTT-TAAA-TATAT
1 AAATATTTTAGAAATTATAT
46953088 AAA
1 AAA
46953091 ATACTATAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 15
0.72 0.15 0.14
Matches are distributed among these distances:
18 11 0.14
19 25 0.32
20 23 0.29
21 19 0.24
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.42
Consensus pattern (20 bp):
AAATATTTTAGAAATTATAT
Found at i:46953092 original size:19 final size:20
Alignment explanation
Indices: 46953031--46953093 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 20
46953021 AAAATATTAT
* *
46953031 AATATTTTAGAAATTATATAG
1 AATATTTTA-AAACTATATAA
*
46953052 AATATTATAAAACTATAT-A
1 AATATTTTAAAACTATATAA
*
46953071 AATATTTTTAAA-TATATAA
1 AATATTTTAAAACTATATAA
46953090 AATA
1 AATA
46953094 CTATAAAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 5 0.14
19 15 0.42
20 8 0.22
21 8 0.22
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (20 bp):
AATATTTTAAAACTATATAA
Found at i:46953098 original size:10 final size:9
Alignment explanation
Indices: 46953045--46953144 Score: 51
Period size: 10 Copynumber: 10.2 Consensus size: 9
46953035 TTTTAGAAAT
*
46953045 TATATAGAA
1 TATATAAAA
46953054 TATTATAAAA
1 TA-TATAAAA
46953064 CTATAT-AAA
1 -TATATAAAA
* *
46953073 TATTTTTAAA
1 TA-TATAAAA
46953083 TATATAAAA
1 TATATAAAA
46953092 TACTATAAAA
1 TA-TATAAAA
*
46953102 GGTCATAGAAAA
1 --T-ATATAAAA
46953114 TTATATAAAA
1 -TATATAAAA
*
46953124 TTTATTAAAA
1 TATA-TAAAA
46953134 TGATA-AAAA
1 T-ATATAAAA
46953143 TA
1 TA
46953145 AAAAAAAATT
Statistics
Matches: 72, Mismatches: 9, Indels: 21
0.71 0.09 0.21
Matches are distributed among these distances:
8 3 0.04
9 22 0.31
10 34 0.47
11 5 0.07
12 7 0.10
13 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (9 bp):
TATATAAAA
Found at i:46953850 original size:16 final size:16
Alignment explanation
Indices: 46953818--46953851 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46953808 ACAATTTAAT
* *
46953818 ATATTTTTTCATTTTA
1 ATATTTTTTAATATTA
46953834 ATATTTTTTAATATTA
1 ATATTTTTTAATATTA
46953850 AT
1 AT
46953852 TAGTTTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
ATATTTTTTAATATTA
Found at i:46955577 original size:14 final size:15
Alignment explanation
Indices: 46955548--46955581 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
46955538 TTGGAACCCT
*
46955548 ATTTAGATAGATTAG
1 ATTTAGAGAGATTAG
46955563 ATTTAGAGA-ATTAG
1 ATTTAGAGAGATTAG
46955577 ATTTA
1 ATTTA
46955582 CATTAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (15 bp):
ATTTAGAGAGATTAG
Found at i:46961912 original size:26 final size:26
Alignment explanation
Indices: 46961863--46961915 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
46961853 TGAAATATTA
* *
46961863 TCAAATCGAGTCGAGTAAAATGAAAT
1 TCAAATCGAATCGAATAAAATGAAAT
* *
46961889 TCAAATCGAATCGAATTAAGTGAAAT
1 TCAAATCGAATCGAATAAAATGAAAT
46961915 T
1 T
46961916 GTTCTAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.26
Consensus pattern (26 bp):
TCAAATCGAATCGAATAAAATGAAAT
Found at i:46962206 original size:23 final size:23
Alignment explanation
Indices: 46962164--46962223 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
46962154 TGTTTAGAGT
* * *
46962164 TTTTTAGAATATTAATTTTTATAA
1 TTTTTAAAATA-TAAATTTTAGAA
46962188 TTTTTAAAATATAAATTTTAGAA
1 TTTTTAAAATATAAATTTTAGAA
46962211 TTTTTATAAATAT
1 TTTTTA-AAATAT
46962224 TTTAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (23 bp):
TTTTTAAAATATAAATTTTAGAA
Found at i:46962227 original size:20 final size:20
Alignment explanation
Indices: 46962202--46962263 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 20
46962192 TAAAATATAA
46962202 ATTTTAGAATTTTTATAAAT
1 ATTTTAGAATTTTTATAAAT
*
46962222 ATTTTA-AA-TTTTAAAAATT
1 ATTTTAGAATTTTTATAAA-T
46962241 ATTTT-GAAATTTTT-TAAAT
1 ATTTTAG-AATTTTTATAAAT
46962260 -TTTT
1 ATTTT
46962264 GTTGAGACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 12 0.33
19 9 0.25
20 11 0.31
21 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTTTAGAATTTTTATAAAT
Found at i:46964439 original size:27 final size:27
Alignment explanation
Indices: 46964401--46964493 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
46964391 TAGTTGTGGC
* * *
46964401 AACA-GGGTTAGTCTGTTGGGATAGTA
1 AACACGGGGTAGTCTGTCGGGACAGTA
* * *
46964427 AACACCGGGTAGT-TCATCAGGACAGTA
1 AACACGGGGTAGTCT-GTCGGGACAGTA
*
46964454 AACACGGGGTAGTCTGTCGAGACAGTA
1 AACACGGGGTAGTCTGTCGGGACAGTA
*
46964481 AACATGGGGTAGT
1 AACACGGGGTAGT
46964494 TCATTGAGAC
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
26 5 0.09
27 47 0.89
28 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (27 bp):
AACACGGGGTAGTCTGTCGGGACAGTA
Found at i:46964491 original size:54 final size:54
Alignment explanation
Indices: 46964402--46964592 Score: 170
Period size: 54 Copynumber: 3.5 Consensus size: 54
46964392 AGTTGTGGCA
* * * **
46964402 ACAGGGTTAGTCTGTTGGGATAGTAAACACCGGGTAGTTCATCAGGACAGTAAAC
1 ACAGGG-TAGTCTGTCGAGACAGTAAACATGGGGTAGTTCATCAGGACAGTAAAC
* * * *
46964457 ACGGGGTAGTCTGTCGAGACAGTAAACATGGGGTAGTTCAT-TGAGACAATAAAT
1 ACAGGGTAGTCTGTCGAGACAGTAAACATGGGGTAGTTCATCAG-GACAGTAAAC
* * * * * *
46964511 ATAGGGTAGT-TCGTCGAGACAATAAACGTGGGGTAGTTCGTCGGGAGAGTAAAC
1 ACAGGGTAGTCT-GTCGAGACAGTAAACATGGGGTAGTTCATCAGGACAGTAAAC
* * * *
46964565 ACATGGTTGTTTGTTGAGACAGTAAACA
1 ACAGGGTAGTCTGTCGAGACAGTAAACA
46964593 CGGGATAGCC
Statistics
Matches: 108, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 2 0.02
54 99 0.92
55 7 0.06
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (54 bp):
ACAGGGTAGTCTGTCGAGACAGTAAACATGGGGTAGTTCATCAGGACAGTAAAC
Found at i:46964563 original size:27 final size:27
Alignment explanation
Indices: 46964423--46964592 Score: 137
Period size: 27 Copynumber: 6.3 Consensus size: 27
46964413 CTGTTGGGAT
** *
46964423 AGTAAACACCGGGTAGTTCATC-AGGAC
1 AGTAAACATGGGGTAGTTCGTCGA-GAC
*
46964450 AGTAAACACGGGGTAG-TCTGTCGAGAC
1 AGTAAACATGGGGTAGTTC-GTCGAGAC
* *
46964477 AGTAAACATGGGGTAGTTCATTGAGAC
1 AGTAAACATGGGGTAGTTCGTCGAGAC
* * *
46964504 AATAAATATAGGGTAGTTCGTCGAGAC
1 AGTAAACATGGGGTAGTTCGTCGAGAC
* * * *
46964531 AATAAACGTGGGGTAGTTCGTCGGGAG
1 AGTAAACATGGGGTAGTTCGTCGAGAC
*** * * *
46964558 AGTAAACACATGGTTGTTTGTTGAGAC
1 AGTAAACATGGGGTAGTTCGTCGAGAC
46964585 AGTAAACA
1 AGTAAACA
46964593 CGGGATAGCC
Statistics
Matches: 115, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 110 0.96
28 3 0.03
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (27 bp):
AGTAAACATGGGGTAGTTCGTCGAGAC
Found at i:46973585 original size:15 final size:15
Alignment explanation
Indices: 46973565--46973602 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
46973555 TTGAGAAATC
46973565 AAAAAGAAAAGAAAG
1 AAAAAGAAAAGAAAG
*
46973580 AAAAAGAAAAGAGAG
1 AAAAAGAAAAGAAAG
*
46973595 AAGAAGAA
1 AAAAAGAA
46973603 GAAAAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAG
Found at i:46974318 original size:26 final size:27
Alignment explanation
Indices: 46974289--46974345 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
46974279 TAAACAACTT
46974289 AATTACATTACACATATTT-TTTTAAA
1 AATTACATTACACATATTTATTTTAAA
*** * *
46974315 AATTTGTTTACATATTTTTATTTTAAA
1 AATTACATTACACATATTTATTTTAAA
46974342 AATT
1 AATT
46974346 GAGAAATACA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (27 bp):
AATTACATTACACATATTTATTTTAAA
Found at i:46974659 original size:15 final size:17
Alignment explanation
Indices: 46974626--46974659 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
46974616 TTTTTATTGT
46974626 TTTTTAATTTTCATAAA
1 TTTTTAATTTTCATAAA
46974643 TTTTT-ATTTTC-TAAA
1 TTTTTAATTTTCATAAA
46974658 TT
1 TT
46974660 ATTTTTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 6 0.35
17 5 0.29
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTAATTTTCATAAA
Found at i:46979976 original size:20 final size:20
Alignment explanation
Indices: 46979933--46979994 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
46979923 ATAAACATTC
*
46979933 AATTAAATTTAATACTAAGAT
1 AATT-AATTTAATATTAAGAT
46979954 AATTAATTTAATATTAA-ATT
1 AATTAATTTAATATTAAGA-T
**
46979974 AA-TAAAATAATATTAAGAT
1 AATTAATTTAATATTAAGAT
46979993 AA
1 AA
46979995 ATATAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 16 0.44
20 16 0.44
21 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTAATTTAATATTAAGAT
Found at i:46980034 original size:68 final size:69
Alignment explanation
Indices: 46979893--46980037 Score: 161
Period size: 68 Copynumber: 2.1 Consensus size: 69
46979883 TTAATCACTT
* * **
46979893 TAATATTAAATTAAACTAATATTTATCAAGATAAACATTCAATTAAATTTAATACTAAGATAATT
1 TAATATTAAATTAAACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGATAATT
**
46979958 AATT
66 AAAA
* * * *
46979962 TAATATTAAATTAATA-AAATA-ATATTAAGATAAATATAAAATTAAATTTAATATTAA-ATCTA
1 TAATATTAAATTAA-ACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGAT-AA
46980024 TTAAAA
64 TTAAAA
46980030 TAATATTA
1 TAATATTA
46980038 CTTTTGAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
67 2 0.03
68 43 0.67
69 18 0.28
70 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (69 bp):
TAATATTAAATTAAACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGATAATT
AAAA
Found at i:46985792 original size:14 final size:14
Alignment explanation
Indices: 46985773--46985804 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
46985763 CTAATTAAAT
*
46985773 ATATAGATATACAC
1 ATATAGATACACAC
46985787 ATATAGATACACAC
1 ATATAGATACACAC
46985801 ATAT
1 ATAT
46985805 CATACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (14 bp):
ATATAGATACACAC
Found at i:46988553 original size:5 final size:6
Alignment explanation
Indices: 46988536--46988561 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
46988526 AATATTTAAC
46988536 ATAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA ATAAAA ATAAAA AT
46988562 GTATTATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:46990524 original size:23 final size:24
Alignment explanation
Indices: 46990488--46990532 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
46990478 TAGTCATTTA
* *
46990488 TTTTAATTTTTTTATT-TAAAAGT
1 TTTTAAGTTATTTATTATAAAAGT
46990511 TTTTAAGTTATTTATTATAAAA
1 TTTTAAGTTATTTATTATAAAA
46990533 ATAAATGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTAAGTTATTTATTATAAAAGT
Found at i:47003255 original size:40 final size:40
Alignment explanation
Indices: 47003190--47003450 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
47003180 TACATCGTCA
* *
47003190 GATCC-ACCG-AACACACTAGACAGAAGCTCATAAGAGCT
1 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
* * *
47003228 AATCCACCCG-AAGTACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCGTAA-CACACCAAACAGAAGCTCATAAGAGCT
47003268 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
* * *
47003308 GATCC-ACC-TGAAGCACACTAGACAGAAACTCATAAGAGCT
1 GATCCAACCGT-AA-CACACCAAACAGAAGCTCATAAGAGCT
*
47003348 GATCCAATCGTAACACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
* * *
47003388 GATCCAACTGTAACACGCCAAACAAAAGCTCATAAGAGCT
1 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
* * *
47003428 GGTCCAACCGAAACACGCCAAAC
1 GATCCAACCGTAACACACCAAAC
47003451 TGAAAGTATA
Statistics
Matches: 194, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 5 0.03
39 10 0.05
40 172 0.89
41 6 0.03
42 1 0.01
ACGTcount: A:0.41, C:0.30, G:0.16, T:0.13
Consensus pattern (40 bp):
GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
Found at i:47003366 original size:120 final size:118
Alignment explanation
Indices: 47003190--47003443 Score: 377
Period size: 120 Copynumber: 2.1 Consensus size: 118
47003180 TACATCGTCA
* * *
47003190 GATCCACCGAACACACTAGACAGAAGCTCATAAGAGCTAATCCACCCGAAGTACACCAAACAGAA
1 GATCCACCGAACACACTAGACAGAAACTCATAAGAGCTAATCCAACCGAAGCACACCAAACAGAA
*
47003255 GCTCATAAGAGCTGATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
66 GCTCATAAGAGCTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCT
* *
47003308 GATCCACCTGAAGCACACTAGACAGAAACTCATAAGAGCTGATCCAATCGTAA-CACACCAAACA
1 GATCCACC-GAA-CACACTAGACAGAAACTCATAAGAGCTAATCCAACCG-AAGCACACCAAACA
* *
47003372 GAAGCTCATAAGAGCTGATCCAACTGTAACACGCCAAACAAAAGCTCATAAGAGCT
63 GAAGCTCATAAGAGCTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCT
*
47003428 GGTCCAACCGAA-ACAC
1 GATCC-ACCGAACACAC
47003444 GCCAAACTGA
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
118 12 0.10
119 3 0.02
120 103 0.84
121 5 0.04
ACGTcount: A:0.41, C:0.29, G:0.16, T:0.13
Consensus pattern (118 bp):
GATCCACCGAACACACTAGACAGAAACTCATAAGAGCTAATCCAACCGAAGCACACCAAACAGAA
GCTCATAAGAGCTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCT
Found at i:47009995 original size:41 final size:41
Alignment explanation
Indices: 47009950--47010085 Score: 209
Period size: 41 Copynumber: 3.3 Consensus size: 41
47009940 GCTCTATACT
* *
47009950 TAGCAAGCTTAATGCCAGTGAAATAATTCAGACTTTATGTC
1 TAGCAAGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
*
47009991 TAGCAAGCTTAATGCCGGTGAAATATTTCAGACTTTACGTC
1 TAGCAAGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
* * *
47010032 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACATT
1 TAGCAAGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
*
47010073 TAGCAGGCTTAAT
1 TAGCAAGCTTAAT
47010086 ACCGATGTTC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (41 bp):
TAGCAAGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
Done.