Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 16 of 211
Found at i:4341431 original size:17 final size:18
Alignment explanation
Indices: 4341399--4341432 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4341389 TACAATTTAG
*
4341399 TACATATATATTATAAAT
1 TACATATATATAATAAAT
4341417 TACAT-TATATAATAAA
1 TACATATATATAATAAA
4341433 AATATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
TACATATATATAATAAAT
Found at i:4350095 original size:21 final size:21
Alignment explanation
Indices: 4350069--4350113 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
4350059 CTTAACGGGA
* *
4350069 TAGCTGATGTGGCTAGTTAAC
1 TAGCTGATGTGGCCAATTAAC
4350090 TAGCTGATGTGGCCAATTAAC
1 TAGCTGATGTGGCCAATTAAC
4350111 TAG
1 TAG
4350114 TCACGTTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (21 bp):
TAGCTGATGTGGCCAATTAAC
Found at i:4352072 original size:15 final size:14
Alignment explanation
Indices: 4352040--4352072 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
4352030 AGGTTTTCAA
4352040 TTTTTTTTCTCTTC
1 TTTTTTTTCTCTTC
4352054 TTTTATTTTCT-TTC
1 TTTT-TTTTCTCTTC
4352068 TTTTT
1 TTTTT
4352073 CATTCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.06
14 11 0.61
15 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTTCTCTTC
Found at i:4353391 original size:41 final size:41
Alignment explanation
Indices: 4353346--4353493 Score: 197
Period size: 41 Copynumber: 3.6 Consensus size: 41
4353336 CCGATTTTTG
* * * *
4353346 GCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCAA
1 GCCTACTAGACATAAAGTCTGAATTGTTTCACCGGCATCAA
* * *
4353387 GCCTGCTAGACATAAAGTTTGAATTGTTTCACCGGCATAAA
1 GCCTACTAGACATAAAGTCTGAATTGTTTCACCGGCATCAA
* *
4353428 GTCTACTAGACATAAAGTCTGAATTGTTTCACCGGCATCCA
1 GCCTACTAGACATAAAGTCTGAATTGTTTCACCGGCATCAA
* *
4353469 GCCTACTAGGCATAGAGTCTGAATT
1 GCCTACTAGACATAAAGTCTGAATT
4353494 ATCTCACTGG
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (41 bp):
GCCTACTAGACATAAAGTCTGAATTGTTTCACCGGCATCAA
Found at i:4353519 original size:41 final size:41
Alignment explanation
Indices: 4353374--4353521 Score: 154
Period size: 41 Copynumber: 3.6 Consensus size: 41
4353364 CTAAAATGTT
* * * * *
4353374 TCACCGGCATCAAGCCTGCTAGACATAAAGTTTGAATTGTT
1 TCACCGGCATCAAGCCTACTAGGCATAAAGTCTGAATTATC
* * * * *
4353415 TCACCGGCATAAAGTCTACTAGACATAAAGTCTGAATTGTT
1 TCACCGGCATCAAGCCTACTAGGCATAAAGTCTGAATTATC
* *
4353456 TCACCGGCATCCAGCCTACTAGGCATAGAGTCTGAATTATC
1 TCACCGGCATCAAGCCTACTAGGCATAAAGTCTGAATTATC
* *
4353497 TCACTGGCAAT-AAGCCTTCTAGGCA
1 TCACCGGC-ATCAAGCCTACTAGGCA
4353522 CTGAGCTTGA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 90 0.98
42 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
TCACCGGCATCAAGCCTACTAGGCATAAAGTCTGAATTATC
Found at i:4356350 original size:66 final size:66
Alignment explanation
Indices: 4356230--4356363 Score: 189
Period size: 66 Copynumber: 2.0 Consensus size: 66
4356220 ATTCTGAAGC
* * *
4356230 TGTAGCTAGAGTTCATCATATTTTCTTGTTGCATCTGCTTCCCTCGCTGCTGCCTCTGCTTTAAG
1 TGTAGCTAGAGTTCATCATATTTTCTTGTAGCATCTACTTCCCTCGATGCTGCCTCTGCTTTAAG
4356295 T
66 T
* * * *
4356296 TGTAGCTAGAGTTCATCATATTTTCTT-TGAGCCTCTACTTCTCTTGATGTTGCCTCTGCTTTAA
1 TGTAGCTAGAGTTCATCATATTTTCTTGT-AGCATCTACTTCCCTCGATGCTGCCTCTGCTTTAA
4356360 GT
65 GT
4356362 TG
1 TG
4356364 AGCAACTTGC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 1 0.02
66 59 0.98
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (66 bp):
TGTAGCTAGAGTTCATCATATTTTCTTGTAGCATCTACTTCCCTCGATGCTGCCTCTGCTTTAAG
T
Found at i:4358222 original size:20 final size:20
Alignment explanation
Indices: 4358199--4358238 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4358189 CACACAGGCT
*
4358199 TGTGCCTCCTTCCACATGGG
1 TGTGCCTCCCTCCACATGGG
**
4358219 TGTGTGTCCCTCCACATGGG
1 TGTGCCTCCCTCCACATGGG
4358239 CGTGTTGACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.33, G:0.28, T:0.30
Consensus pattern (20 bp):
TGTGCCTCCCTCCACATGGG
Found at i:4365672 original size:23 final size:23
Alignment explanation
Indices: 4365642--4365687 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
4365632 TCTTATTCCT
4365642 TAGTTCATCTGCTGGAACACAAA
1 TAGTTCATCTGCTGGAACACAAA
*
4365665 TAGTTCATCTGTTGGAACACAAA
1 TAGTTCATCTGCTGGAACACAAA
4365688 GTCGCCCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (23 bp):
TAGTTCATCTGCTGGAACACAAA
Found at i:4369877 original size:28 final size:28
Alignment explanation
Indices: 4369846--4369908 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
4369836 TATATCTCTA
4369846 TTGTTTGGTTATTTTTGGATTTTTTTTC
1 TTGTTTGGTTATTTTTGGATTTTTTTTC
4369874 TTGTTTGGTTATTTTTGGATTTTTTTTC
1 TTGTTTGGTTATTTTTGGATTTTTTTTC
*
4369902 ATGTTTG
1 TTGTTTG
4369909 TTTTATGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.08, C:0.03, G:0.19, T:0.70
Consensus pattern (28 bp):
TTGTTTGGTTATTTTTGGATTTTTTTTC
Found at i:4372580 original size:17 final size:18
Alignment explanation
Indices: 4372558--4372592 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
4372548 ATGTGAAGAA
4372558 TATTTT-TTAATAAAAAG
1 TATTTTATTAATAAAAAG
4372575 TATTTTAATTAATAAAAA
1 TATTTT-ATTAATAAAAA
4372593 CTATAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
TATTTTATTAATAAAAAG
Found at i:4374526 original size:3 final size:3
Alignment explanation
Indices: 4374520--4374585 Score: 87
Period size: 3 Copynumber: 22.0 Consensus size: 3
4374510 ATAGCAGTAG
* * * * *
4374520 TAA TAA TAA TAA TAA TAA AAA TGA TGA TGA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4374568 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
4374586 ATGGGGACTA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:4375693 original size:19 final size:19
Alignment explanation
Indices: 4375671--4375727 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
4375661 GCGCGACGTT
4375671 TGCGGAGGTGCGCGAGGAG
1 TGCGGAGGTGCGCGAGGAG
* ***
4375690 TGC-GA-CT-C-CGAGTCT
1 TGCGGAGGTGCGCGAGGAG
4375705 TGCGGAGGTGCGCGAGGAG
1 TGCGGAGGTGCGCGAGGAG
4375724 TGCG
1 TGCG
4375728 ACTCCGAGTC
Statistics
Matches: 26, Mismatches: 8, Indels: 8
0.62 0.19 0.19
Matches are distributed among these distances:
15 7 0.27
16 3 0.12
17 2 0.08
18 3 0.12
19 11 0.42
ACGTcount: A:0.14, C:0.21, G:0.49, T:0.16
Consensus pattern (19 bp):
TGCGGAGGTGCGCGAGGAG
Found at i:4375708 original size:34 final size:34
Alignment explanation
Indices: 4375670--4375744 Score: 150
Period size: 34 Copynumber: 2.2 Consensus size: 34
4375660 TGCGCGACGT
4375670 TTGCGGAGGTGCGCGAGGAGTGCGACTCCGAGTC
1 TTGCGGAGGTGCGCGAGGAGTGCGACTCCGAGTC
4375704 TTGCGGAGGTGCGCGAGGAGTGCGACTCCGAGTC
1 TTGCGGAGGTGCGCGAGGAGTGCGACTCCGAGTC
4375738 TTGCGGA
1 TTGCGGA
4375745 AATTCTGCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.15, C:0.23, G:0.44, T:0.19
Consensus pattern (34 bp):
TTGCGGAGGTGCGCGAGGAGTGCGACTCCGAGTC
Found at i:4382244 original size:112 final size:106
Alignment explanation
Indices: 4381936--4382797 Score: 806
Period size: 108 Copynumber: 7.8 Consensus size: 106
4381926 AAAAAAAAAA
*
4381936 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTTAAATTTTTTTTTTGGTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAAATTTTTTTTTTGGTG
* * * *
4382001 GTGGCCGGACAATTGCCAGCACCACCTTTATGTAATTTTTTTTTT
66 GTGGCTGG-CAATGGCCGGCACCACCTTTATGTAA---ATTTTTT
* *
4382046 TTACATTTTGGGCTGTAATTGGCC-ACACCAGTATACGAAAAAA-TT-AAATTTTTTTTTTGGTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAAATTTTTTTTTTGGTG
4382108 GTGGCCTGGCAATGGCCGGCACCACCTTTATGT-AATTTTTT
66 GTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTT
* * *
4382149 TTACATTTTGGACTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAATTTTTTTTTTATTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAA-----ATTTT-TTTT
4382214 TTGGTGGTGGCTAGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
60 TTGGTGGTGGCT-GGCAATGGCCGGCACCACCTTTATGTAAA---TTTTTT
* * *
4382265 TTACATTTT-AGCTGTCATTGGCCGGCACCAATATACGAAAAAATTCAAAAAAATTTTTTTTTTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATT---TAAAATTTTTTTTTTG
* *
4382329 GTGGTGGACTGGCAATGGTCGGCACCACATTTATGTAAATTTTATTTTTT
63 GTGGTGG-CTGGCAATGGCCGGCACCACCTTTATGT-AA----ATTTTTT
* * *** *
4382379 TTACATTTTGGGCTGTCATTAGCCGGCACTAGTATACGAAATTTTTTTTAAAAAAAAATTTATTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAA--AAATTT-----AAAATTTTTTT
4382444 TTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTT
59 TTTGGTGGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAA--TTTTTT
* * * * * *
4382495 TTACATTTT-GGCTGTCATTGGCCGGTACTAGTATATGGAAAAA-TTCAAGTTTTTTTTTT-GTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAAATTTTTTTTTTGGTG
* * ******
4382557 GTGACCTAGCAATGGCCGGCACCACCTTTATGTAAAAAAAAAA
66 GTG-GCTGGCAATGGCCGGCACCACCTTTATGT-AAATTTTTT
* * * ** * *
4382600 ATACATTTTGGGCTGTCATTGACAGGCACCAGTATATAAAAAAATTCAAAATTTTTTTTTTTTGT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAAA-TTTTTTTTTTGGT
* * *
4382665 GGTGGTCTGGAAATGGCCTGCACCACCTATATGT-AATTTTTT
65 GGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTT
* ** * ****
4382707 TATATATTTTGGGCTGTCATTGGCCGGCACCAGTATATAAAAAAATTCAAAAAAAAATTTTTTGG
1 T-TACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATT-TAAAATTTTTTTTTTGG
*
4382772 TGGTGGCCTGGCAATGGCTGGCACCA
64 TGGTGG-CTGGCAATGGCCGGCACCA
4382798 AATTTATTAA
Statistics
Matches: 625, Mismatches: 84, Indels: 88
0.78 0.11 0.11
Matches are distributed among these distances:
103 28 0.04
104 17 0.03
105 10 0.02
106 64 0.10
107 62 0.10
108 86 0.14
109 52 0.08
110 23 0.04
111 6 0.01
112 80 0.13
113 10 0.02
114 16 0.03
115 86 0.14
116 30 0.05
117 3 0.00
118 5 0.01
119 47 0.08
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (106 bp):
TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTTAAAATTTTTTTTTTGGTG
GTGGCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTT
Found at i:4382304 original size:115 final size:112
Alignment explanation
Indices: 4381936--4382797 Score: 821
Period size: 115 Copynumber: 7.8 Consensus size: 112
4381926 AAAAAAAAAA
* *
4381936 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTT---TAAATTTTTTTTTTG
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTG
* * *
4381998 GTGGTGGCC-GGACAATTGCCAGCACCACCTTTATGTAATTTTTTTTTT
65 GTGGTGGCCTGG-CAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * *
4382046 TTACATTTTGGGCTGTAATTGGCC-ACACCAGTATACGAAAAAA-TT----AAATTTTTTTTTTG
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTG
4382105 GTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGT-AA---TTTTTT
65 GTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
****
4382149 TTACATTTTGGACTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAATTTTTTTTTTATTTT
1 TTACATTTTGG-CTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAA--AAAATTTT-TTTT
4382214 TTGGTGGTGG-CTAGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
62 TTGGTGGTGGCCT-GGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * *
4382265 TTACATTTTAGCTGTCATTGGCCGGCACCAATATACGAAAAAATTCAAAAAAATTTTTTTTTTGG
1 TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTGG
* * *
4382330 TGGTGGACTGGCAATGGTCGGCACCACATTTATGTAAATTTTATTTTTT
66 TGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAA-TTT-TTTTTT
* *** *
4382379 TTACATTTTGGGCTGTCATTAGCCGGCACTAGTATACGAAATTTTTTTTAAAAAAAAATTTATTT
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAA--AAATTT--AAAAAAATTTTTTT
4382444 TTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAA-TTTTTTTT
61 TTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * * *
4382495 TTACATTTTGGCTGTCATTGGCCGGTACTAGTATATGGAAAAA-TT---CAAGTTTTTTTTTT-G
1 TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTGG
* * *******
4382555 TGGTGACCTAGCAATGGCCGGCACCACCTTTATGTAAA--AAAAAAA
66 TGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * * * * * * *
4382600 ATACATTTTGGGCTGTCATTGACAGGCACCAGTATA-TAAAAAAATT-CAAAATTTTTTTTTTTT
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTG
* * * *
4382663 GTGGTGGTCTGGAAATGGCCTGCACCACCTATATGT-AA--TTTTTTT
65 GTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * ** * **
4382708 ATATATTTTGGGCTGTCATTGGCCGGCACCAGTATATAAAAAAATTCAAAAAAA--AATTTTTTG
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTG
*
4382771 GTGGTGGCCTGGCAATGGCTGGCACCA
65 GTGGTGGCCTGGCAATGGCCGGCACCA
4382798 AATTTATTAA
Statistics
Matches: 632, Mismatches: 89, Indels: 64
0.81 0.11 0.08
Matches are distributed among these distances:
102 2 0.00
103 26 0.04
104 17 0.03
105 15 0.02
106 62 0.10
107 56 0.09
108 80 0.13
109 55 0.09
110 27 0.04
111 6 0.01
112 83 0.13
113 11 0.02
114 15 0.02
115 89 0.14
116 31 0.05
117 4 0.01
119 53 0.08
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (112 bp):
TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAAAAAATTTTTTTTTTGG
TGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
Found at i:4382464 original size:119 final size:111
Alignment explanation
Indices: 4381936--4382797 Score: 747
Period size: 112 Copynumber: 7.8 Consensus size: 111
4381926 AAAAAAAAAA
* ** *
4381936 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATT---TTAAATTTTTTTTTTG
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTG
* * * *
4381998 GTGGTGGCCGGACAATTGCCAGCACCACCTTTATGTAATTTTTTTTTT
65 GTGGTGGCTGG-CAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * *
4382046 TTACATTTTGGGCTGTAATTGGCC-ACACCAGTATACGAAAAAATT-----AAATTTTTTTTTTG
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTG
4382105 GTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGT-AA---TTTTTT
65 GTGGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
*****
4382149 TTACATTTTGGACTGTCATTGGCCGGCACTAGTATACGAAAAAATTTAAATTTTTTTTTTATTTT
1 TTACATTTTGG-CTGTCATTGGCCGGCACTAGTATACGAAAAAA-TTAAA--AAAAATTTATTTT
4382214 TTGGTGGTGGCTAGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
62 TTGGTGGTGGCT-GGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * * *
4382265 TTACATTTTAGCTGTCATTGGCCGGCACCAATATACGAAAAAATTCAAAAAAATTTTTTTTTTGG
1 TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTGG
* *
4382330 TGGTGGACTGGCAATGGTCGGCACCACATTTATGTAAATTTTATTTTTT
66 TGGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAA-TTT-TTTTTT
* ***
4382379 TTACATTTTGGGCTGTCATTAGCCGGCACTAGTATACGAAATTTTTTTTAAAAAAAAATTTATTT
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAA---AAATT-AAAAAAAATTTATTT
4382444 TTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTATGTAAA-TTTTTTTT
61 TTTGGTGGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * * * *
4382495 TTACATTTTGGCTGTCATTGGCCGGTACTAGTATATGGAAAAATT----CAAGTTT-TTTTTTTG
1 TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTGG
* * *******
4382555 TGGTGACCTAGCAATGGCCGGCACCACCTTTATGTAAA--AAAAAAA
66 TGGTG-GCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * * ** * * * *
4382600 ATACATTTTGGGCTGTCATTGACAGGCACCAGTATATAAAAAAATT--CAAAATTTTTTTTTTTT
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTG
* * *
4382663 GTGGTGGTCTGGAAATGGCCTGCACCACCTATATGT-AA--TTTTTTT
65 GTGGTGG-CTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
* * * **
4382708 ATATATTTTGGGCTGTCATTGGCCGGCACCAGTATATAAAAAAATTCAAAAAAAA---ATTTTTT
1 TTACATTTT-GGCTGTCATTGGCCGGCACTAGTATACGAAAAAATT-AAAAAAAATTTATTTTTT
*
4382770 GGTGGTGGCCTGGCAATGGCTGGCACCA
64 GGTGGTGG-CTGGCAATGGCCGGCACCA
4382798 AATTTATTAA
Statistics
Matches: 631, Mismatches: 88, Indels: 68
0.80 0.11 0.09
Matches are distributed among these distances:
102 2 0.00
103 26 0.04
104 17 0.03
105 10 0.02
106 73 0.12
107 48 0.08
108 82 0.13
109 57 0.09
110 23 0.04
111 6 0.01
112 89 0.14
113 7 0.01
114 19 0.03
115 84 0.13
116 31 0.05
117 2 0.00
118 2 0.00
119 53 0.08
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (111 bp):
TTACATTTTGGCTGTCATTGGCCGGCACTAGTATACGAAAAAATTAAAAAAAATTTATTTTTTGG
TGGTGGCTGGCAATGGCCGGCACCACCTTTATGTAAATTTTTTTTT
Found at i:4384205 original size:62 final size:62
Alignment explanation
Indices: 4384069--4384246 Score: 304
Period size: 62 Copynumber: 2.9 Consensus size: 62
4384059 GCGGATATGC
* *
4384069 AATGCTTAAAATTAAATGAAATAAATCAGCTTGGTAGAAAAAAAAAAGTGTGTCATAAAATTG
1 AATGCTTAAAATTAAATGAAATAAATTAGATTGGTAG-AAAAAAAAAGTGTGTCATAAAATTG
* *
4384132 AATGCTCAAAATTAAATGAAATAAATTAGATTGGTAGAAAAAAAAAGTATGTCATAAAATTG
1 AATGCTTAAAATTAAATGAAATAAATTAGATTGGTAGAAAAAAAAAGTGTGTCATAAAATTG
4384194 AATGCTTAAAATTAAATGAAATAAATTAGATTGGTAG-AAAAAAAAGTGTGTCA
1 AATGCTTAAAATTAAATGAAATAAATTAGATTGGTAGAAAAAAAAAGTGTGTCA
4384247 GATTGAATGA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
61 15 0.14
62 60 0.55
63 34 0.31
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.28
Consensus pattern (62 bp):
AATGCTTAAAATTAAATGAAATAAATTAGATTGGTAGAAAAAAAAAGTGTGTCATAAAATTG
Found at i:4384271 original size:44 final size:45
Alignment explanation
Indices: 4384208--4384293 Score: 147
Period size: 44 Copynumber: 1.9 Consensus size: 45
4384198 CTTAAAATTA
* *
4384208 AATGAAATAAATTAGATTGGT-AGAAAAAAAAGTGTGTCAGATTG
1 AATGAAATAAATAAGATTGGTAAAAAAAAAAAGTGTGTCAGATTG
4384252 AATGAAATAAATAAGATTGGTAAAAAAAAAAAGTGTGTCAGA
1 AATGAAATAAATAAGATTGGTAAAAAAAAAAAGTGTGTCAGA
4384294 AGTATTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 20 0.51
45 19 0.49
ACGTcount: A:0.52, C:0.02, G:0.21, T:0.24
Consensus pattern (45 bp):
AATGAAATAAATAAGATTGGTAAAAAAAAAAAGTGTGTCAGATTG
Found at i:4385526 original size:13 final size:13
Alignment explanation
Indices: 4385508--4385532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4385498 CGCGACAATT
4385508 TTAATTTTTTCTA
1 TTAATTTTTTCTA
4385521 TTAATTTTTTCT
1 TTAATTTTTTCT
4385533 TTTTTTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
TTAATTTTTTCTA
Found at i:4385547 original size:18 final size:20
Alignment explanation
Indices: 4385512--4385550 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
4385502 ACAATTTTAA
*
4385512 TTTTTTCTATTAATTTTTTC
1 TTTTTTCTATTAAATTTTTC
4385532 TTTTTT-TA-TAAATTTTTC
1 TTTTTTCTATTAAATTTTTC
4385550 T
1 T
4385551 GTAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 2 0.11
20 6 0.33
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTCTATTAAATTTTTC
Found at i:4385579 original size:31 final size:31
Alignment explanation
Indices: 4385506--4385579 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
4385496 ATCGCGACAA
* *
4385506 TTTTAATTTTTTCTATTAATTTTTTCTTTTT
1 TTTTAATTTTTTCTAGTAAATTTTTCTTTTT
* *
4385537 TTATAAATTTTTCT-GTAAATTTTTCTTTTAT
1 TTTTAATTTTTTCTAGTAAATTTTTCTTTT-T
*
4385568 TTTTACTTTTTT
1 TTTTAATTTTTT
4385580 TATTTTTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
30 13 0.37
31 22 0.63
ACGTcount: A:0.19, C:0.07, G:0.01, T:0.73
Consensus pattern (31 bp):
TTTTAATTTTTTCTAGTAAATTTTTCTTTTT
Found at i:4386880 original size:114 final size:112
Alignment explanation
Indices: 4386502--4387054 Score: 670
Period size: 112 Copynumber: 4.9 Consensus size: 112
4386492 ACCCGAAATT
* *
4386502 TTTTTTTTAAATTTTTTCGTATACTGGTGCCTGCCAATGATAGCCCAAAATGT--AATTTTTTTT
1 TTTTTTTTAAATTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTT
* * * *
4386565 ACATAAAGGTGATGCAGGCCATTGCCAGGCCACCACCTAAAAAAAAA
66 ACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCACCAAAAAAAAAA
* ** * * *
4386612 TTTTTTTTAAATTTTTTTCATATGTTAGTGCCGGCCAATGATAG-CTAAAATGT--AATTTTTTT
1 TTTTTTTTAAA-TTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTT
* * * * *
4386674 TACATAAAGCTAGTGCCGACCATTG-CTAGGCCACCACCAAAAAATAAT
65 TACATAAAGGTGGTGCCGGCCATTGTC-AGGCCACCACCAAAAAAAAAA
* * *
4386722 TTTTTTTTGAATTTTTTCGTATACTGATGCCGGCCAATAACAGCCCAAAATGTAAAATTTTTTTT
1 TTTTTTTTAAATTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTT
* * *
4386787 ACATCAAGGTGGTGCCGGTCATTGTCAGGCCACCACAAAAAAAAAAGCA
66 ACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCACCAAAAAAAAA--A
* * **
4386836 TTTTTTTTGAATTTTTTCGTATAGTGGTGCCTTCCAATGACAGCCCAAAATGTAAAATTTTTTTT
1 TTTTTTTTAAATTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTT
**
4386901 ACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCACC-AAAAAAATT
66 ACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCACCAAAAAAAAAA
* **
4386947 TTTTTTTTAAAATTTTTTCGTATACTGGTGCCGACCAATGACAGCCCAAAATGTAATTTTTTTTT
1 TTTTTTTT-AAATTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTT
* * * * *
4387012 TACATAAAAGTGGTGCCAGCCATTGACAGACCAGCATCCAAAA
65 TACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCA-CCAAAA
4387055 TTTTTTTTTC
Statistics
Matches: 380, Mismatches: 52, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
109 26 0.07
110 84 0.22
111 35 0.09
112 128 0.34
113 10 0.03
114 97 0.26
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (112 bp):
TTTTTTTTAAATTTTTTCGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTT
ACATAAAGGTGGTGCCGGCCATTGTCAGGCCACCACCAAAAAAAAAA
Found at i:4386954 original size:226 final size:220
Alignment explanation
Indices: 4386470--4387036 Score: 705
Period size: 226 Copynumber: 2.6 Consensus size: 220
4386460 TAAAGTTTAA
* **
4386470 TGCCGGCCATTGACAGGCCAGCACC-CGAAA-TTTTTTTTTTAAATTTTTTCGTATACTGGTGCC
1 TGCCGGCCATTG-CAGGCCACCACCAAAAAATTTTTTTTTTTAAATTTTTTCGTATACTGGTGCC
* * * *
4386533 TGCCAATGATAGCCCAAAATGT--AATTTTTTTTACATAAAGGTGATGCAGGCCATTGCCAGGCC
65 GGCCAATGACAGCCCAAAATGTAAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGCCAGGCC
** * *
4386596 ACCACCTAAAAAAAAATTTTTTTTAAATTTTTTTCATATGTTAGTGCCGGCCAATGATAGCTAAA
130 ACCACAAAAAAAAAAATTTTTTTTAAATTTTTTTCATATGTTAGTGCCGGCCAATGACAGCCAAA
4386661 ATGTAATTTTTTTTACATAAAGCTAG
195 ATGTAATTTTTTTTACATAAAGCTAG
* * * *
4386687 TGCCGACCATTGCTAGGCCACCACCAAAAAATAATTTTTTTTTGAATTTTTTCGTATACTGATGC
1 TGCCGGCCATTGC-AGGCCACCACCAAAAAAT-TTTTTTTTTTAAATTTTTTCGTATACTGGTGC
* * * *
4386752 CGGCCAATAACAGCCCAAAATGTAAAATTTTTTTTACATCAAGGTGGTGCCGGTCATTGTCAGGC
64 CGGCCAATGACAGCCCAAAATGTAAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGCCAGGC
* * * **
4386817 CACCACAAAAAAAAAAGCATTTTTTTTGAA-TTTTTTCGTATAG-TGGTGCCTTCCAATGACAGC
129 CACCACAAAAAAAAAA--ATTTTTTTTAAATTTTTTTCATAT-GTTAGTGCCGGCCAATGACAG-
* *
4386880 CCAAAATGTAAAATTTTTTTTACATAAAGGTGG
190 CCAAAATGT--AATTTTTTTTACATAAAGCTAG
*
4386913 TGCCGGCCATTGTCAGGCCACCACCAAAAAAATTTTTTTTTTAAAATTTTTTCGTATACTGGTGC
1 TGCCGGCCATTG-CAGGCCACCACC-AAAAAATTTTTTTTTTTAAATTTTTTCGTATACTGGTGC
* ** * *
4386978 CGACCAATGACAGCCCAAAATGTAATTTTTTTTTTACATAAAAGTGGTGCCAGCCATTG
64 CGGCCAATGACAGCCCAAAATGTAAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTG
4387037 ACAGACCAGC
Statistics
Matches: 297, Mismatches: 39, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
216 1 0.00
217 21 0.07
218 3 0.01
220 49 0.16
222 49 0.16
223 25 0.08
224 20 0.07
226 121 0.41
227 8 0.03
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (220 bp):
TGCCGGCCATTGCAGGCCACCACCAAAAAATTTTTTTTTTTAAATTTTTTCGTATACTGGTGCCG
GCCAATGACAGCCCAAAATGTAAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGCCAGGCCA
CCACAAAAAAAAAAATTTTTTTTAAATTTTTTTCATATGTTAGTGCCGGCCAATGACAGCCAAAA
TGTAATTTTTTTTACATAAAGCTAG
Found at i:4388884 original size:12 final size:12
Alignment explanation
Indices: 4388867--4388891 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4388857 TTATTAGACC
4388867 GATCAGCTAGGA
1 GATCAGCTAGGA
4388879 GATCAGCTAGGA
1 GATCAGCTAGGA
4388891 G
1 G
4388892 CAACCATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.36, T:0.16
Consensus pattern (12 bp):
GATCAGCTAGGA
Found at i:4401666 original size:3 final size:3
Alignment explanation
Indices: 4401658--4401687 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
4401648 CCTTTTTTCC
4401658 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4401688 AGAAGTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4402126 original size:19 final size:19
Alignment explanation
Indices: 4402076--4402127 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
4402066 ATGTTTATGT
*
4402076 ATTTTCACATATTATAATA
1 ATTTTAACATATTATAATA
*
4402095 ATATTTAAAATATTAT-ATAA
1 AT-TTTAACATATTATAAT-A
4402115 ATTTTAACATATT
1 ATTTTAACATATT
4402128 TAAATTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTTAACATATTATAATA
Found at i:4405901 original size:31 final size:31
Alignment explanation
Indices: 4405847--4405911 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
4405837 TACAAATTAA
* *
4405847 TCATTAGAGTATTTGAAAATTTTTATATAAG
1 TCATTAAAGTATTCGAAAATTTTTATATAAG
* * *
4405878 TCATTAAATTATTCGAAAGTTTTTATTTAAG
1 TCATTAAAGTATTCGAAAATTTTTATATAAG
4405909 TCA
1 TCA
4405912 CTAGGTTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (31 bp):
TCATTAAAGTATTCGAAAATTTTTATATAAG
Found at i:4409156 original size:29 final size:29
Alignment explanation
Indices: 4409124--4409189 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
4409114 ACTAATAAAA
*
4409124 GCCGTTTTTTTCAAAATTTACCGAAATGG
1 GCCGATTTTTTCAAAATTTACCGAAATGG
* ** *
4409153 GCCGATTTTTTGATTATTTACCGGAATGG
1 GCCGATTTTTTCAAAATTTACCGAAATGG
*
4409182 ACC-ATTTT
1 GCCGATTTT
4409190 CCGCGAAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (29 bp):
GCCGATTTTTTCAAAATTTACCGAAATGG
Found at i:4420629 original size:5 final size:6
Alignment explanation
Indices: 4420612--4420636 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4420602 TGTTAAATTA
4420612 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
4420637 GGTTTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:4422524 original size:14 final size:14
Alignment explanation
Indices: 4422483--4422513 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
4422473 TTAATTCTGA
4422483 ATGGATGATGGACT
1 ATGGATGATGGACT
4422497 ATGGATGATGGACT
1 ATGGATGATGGACT
4422511 ATG
1 ATG
4422514 TATGCATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (14 bp):
ATGGATGATGGACT
Found at i:4426331 original size:132 final size:132
Alignment explanation
Indices: 4426094--4427907 Score: 3061
Period size: 132 Copynumber: 13.7 Consensus size: 132
4426084 CATGAGACAA
** * *
4426094 GATCTACTTTACCACCAATATGGGAAGACAAAATCTGCGTCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4426159 GGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4426224 GC
131 GC
*
4426226 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4426291 GGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4426356 GC
131 GC
* * *
4426358 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
** ** *
4426423 GGAAGATAAAACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4426488 GC
131 GC
4426490 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
4426555 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
*
4426620 TC
131 GC
*
4426622 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGTATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4426687 GGAAGATAAGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4426752 GC
131 GC
* * *
4426754 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
** ** *
4426819 GGAAGATAAAACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4426884 GC
131 GC
4426886 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
4426951 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
*
4427016 TC
131 GC
* *
4427018 GATCTACTTCGTCACCAATATGGGAAGACAAGATCTGTATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4427083 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATTCATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
*
4427148 TC
131 GC
* * * * * *
4427150 GATCTACTTCGCCACCAATATAGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4427215 GGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4427280 GC
131 GC
* * *
4427282 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
** ** *
4427347 GGAAGATAAAACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4427412 GC
131 GC
4427414 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4427479 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
*
4427544 TC
131 GC
*
4427546 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGTATCGTCGATCCACTTCCAATCATTATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
4427611 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
*
4427676 TC
131 GC
* * * * *
4427678 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
*
4427743 GGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
4427808 GC
131 GC
* * * *
4427810 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATA
1 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
* * *
4427875 GGAAGATAGGATCAGCTATCTTCGATCTACTTC
66 GGAAGATAGGACCTGTTATCTTCGATCTACTTC
4427908 TTGCCCCGGG
Statistics
Matches: 1596, Mismatches: 86, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 1596 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATA
GGAAGATAGGACCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
GC
Found at i:4428126 original size:95 final size:95
Alignment explanation
Indices: 4428020--4428212 Score: 316
Period size: 95 Copynumber: 2.0 Consensus size: 95
4428010 AAGATCTACA
* *
4428020 ATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CAT
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCAC-T
4428084 GTAGTCAGGGAAGTAAAATCTGCCATCTTTG
65 GTAGTCAGGGAAGTAAAATCTGCCATCTTTG
* * *
4428115 ATCTTCAATCTATTCTACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4428180 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAAGTAAAATCTGCCATCTTTG
4428210 ATC
1 ATC
4428213 GGCTTCGCTG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
95 90 0.99
96 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAAGTAAAATCTGCCATCTTTG
Found at i:4428322 original size:229 final size:229
Alignment explanation
Indices: 4427917--4428576 Score: 1133
Period size: 229 Copynumber: 2.9 Consensus size: 229
4427907 CTTGCCCCGG
** * * *
4427917 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
1 GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
* * *
4427982 TCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAGATA
66 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
* *
4428047 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATGTAGTCAGGGAAGTAAAATCTGCCATC
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC-TGTAGTCAGGGAGGTAAAATCTGCCATC
*
4428111 TTTGATCTTCAATCTATTCTACTGCCAAATGCAGA
195 TTTGATCTTCAATCTATTCCACTGCCAAATGCAGA
*
4428146 GAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
1 GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
* *
4428211 TCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTTCACTGCCAAATA
66 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
* *
4428276 CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
4428341 TTGATCTTCAATCTATTCCACTGCCAAATGCAGA
196 TTGATCTTCAATCTATTCCACTGCCAAATGCAGA
*
4428375 GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGA
1 GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
4428440 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
66 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
*
4428505 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCT
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
4428570 TCGATCT
196 TTGATCT
4428577 GCTTTGCTGC
Statistics
Matches: 406, Mismatches: 24, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
229 405 1.00
230 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (229 bp):
GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
TTGATCTTCAATCTATTCCACTGCCAAATGCAGA
Found at i:4428356 original size:95 final size:95
Alignment explanation
Indices: 4428249--4428442 Score: 343
Period size: 95 Copynumber: 2.0 Consensus size: 95
4428239 AAGATCTGCA
* * *
4428249 ATCTTCAATCTATTTCACTGCCAAATACAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTG
4428314 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
* *
4428344 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTG
4428409 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
4428439 ATCT
1 ATCT
4428443 GCTTCGCTGC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:4428497 original size:134 final size:134
Alignment explanation
Indices: 4428344--4428753 Score: 680
Period size: 134 Copynumber: 3.1 Consensus size: 134
4428334 GCCATCTTTG
* *
4428344 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4428409 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4428474 TGCA
131 TGCA
*
4428478 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* * *
4428543 TAATCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTTGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
4428608 TACA
131 TGCA
*
4428612 ATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CAT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCAC-T
* * *
4428676 GTAGTCAGGGAAGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGAT
65 GTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
4428741 CTG-A
130 CTGCA
4428745 TATCTTCAA
1 -ATCTTCAA
4428754 CCAGCTCTGC
Statistics
Matches: 257, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
133 2 0.01
134 255 0.99
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:4428499 original size:46 final size:46
Alignment explanation
Indices: 4428449--4428642 Score: 143
Period size: 46 Copynumber: 4.3 Consensus size: 46
4428439 ATCTGCTTCG
4428449 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * ** * *
4428495 CTGCCAAATACAGGGA-G-ATAGAAT-TATC-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AG-ATCT-GCAATCTTCAATCTATTCCA
* * * * * * * **
4428540 CTG--TAAT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-TG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
*
4428583 CTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
*
4428629 CTGCCAGATACAGG
1 CTGCCAAATACAGG
4428643 GAGATAGAGT
Statistics
Matches: 108, Mismatches: 28, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
42 9 0.08
43 16 0.15
44 3 0.03
45 25 0.23
46 55 0.51
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:4428835 original size:86 final size:86
Alignment explanation
Indices: 4428701--4429050 Score: 529
Period size: 86 Copynumber: 4.1 Consensus size: 86
4428691 AAATCTGCCA
* * * * * *
4428701 TCTTTGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
4428766 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
4428788 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
4428853 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
4428874 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* *
4428939 AAACGAGAGTGGCAATGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* * *
4428960 TCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
4429025 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
4429046 TCTTC
1 TCTTC
4429051 AATTTTTACT
Statistics
Matches: 243, Mismatches: 20, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
86 224 0.92
87 19 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:4428910 original size:42 final size:42
Alignment explanation
Indices: 4428776--4428910 Score: 98
Period size: 42 Copynumber: 3.2 Consensus size: 42
4428766 CAAACGAGAG
*
4428776 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
4428818 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
4428861 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
4428904 AGGCAAG
1 AGGCAAG
4428911 ATCTGCTATC
Statistics
Matches: 64, Mismatches: 19, Indels: 20
0.62 0.18 0.19
Matches are distributed among these distances:
41 12 0.19
42 20 0.31
43 8 0.12
44 12 0.19
45 12 0.19
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:4429678 original size:108 final size:108
Alignment explanation
Indices: 4429478--4429684 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
4429468 AAATGCTTGA
* *
4429478 AAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAATCAA
1 AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
*
4429543 TCAAGATAGCAAATTTTGCTGAGATACAAGATGAATAAGATGG
66 TCAAGATAGCAAATTTTGCTGAGATACAAAATGAATAAGATGG
* * * * ** * *
4429586 AAAATATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAACTCTAAATGAACACATTAA
1 AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
*
4429651 TCAGGATAGCAAATTTTGCT-AGAATACAAAATGA
66 TCAAGATAGCAAATTTTGCTGAG-ATACAAAATGA
4429685 GAATAAATTA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 2 0.02
108 84 0.98
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (108 bp):
AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
TCAAGATAGCAAATTTTGCTGAGATACAAAATGAATAAGATGG
Found at i:4430023 original size:7 final size:7
Alignment explanation
Indices: 4430007--4430056 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
4429997 TGGCCTCTCC
4430007 TTTTTC-
1 TTTTTCT
4430013 TTTTTCT
1 TTTTTCT
4430020 TTTTTC-
1 TTTTTCT
4430026 -TTTTCT
1 TTTTTCT
4430032 TTTTTCAT
1 TTTTTC-T
*
4430040 TTTTTCA
1 TTTTTCT
4430047 TTTTTCT
1 TTTTTCT
4430054 TTT
1 TTT
4430057 CGTTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 5 0.13
6 6 0.16
7 20 0.53
8 7 0.18
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:4430063 original size:7 final size:6
Alignment explanation
Indices: 4430006--4430056 Score: 50
Period size: 6 Copynumber: 7.8 Consensus size: 6
4429996 TTGGCCTCTC
4430006 CTTTTT CTTTTT CTTTTT -TCTTTT CTTTTTT CATTTTTT CATTTTT CTTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTT
4430057 CGTTTTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
5 1 0.03
6 20 0.50
7 11 0.28
8 8 0.20
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:4430063 original size:12 final size:13
Alignment explanation
Indices: 4430007--4430056 Score: 66
Period size: 12 Copynumber: 3.8 Consensus size: 13
4429997 TGGCCTCTCC
4430007 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
4430020 TTTTTC-TTTTCT
1 TTTTTCTTTTTCT
*
4430032 TTTTTCATTTTTTCA
1 TTTTTC--TTTTTCT
4430047 TTTTTCTTTT
1 TTTTTCTTTT
4430057 CGTTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.36
13 10 0.30
15 11 0.33
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:4442914 original size:273 final size:273
Alignment explanation
Indices: 4442427--4442971 Score: 729
Period size: 273 Copynumber: 2.0 Consensus size: 273
4442417 CATCGACGTT
* *
4442427 GGAAAAATATACTCCAAACCATAACAATTTGATATGCTGACGTCTCCTAACTCTGGGAAGCACAA
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACGTCTCCTAACTCTGGGAAGCACAA
* * *
4442492 AGAATTATGAGAATTGATGGTTGGTGATATTTCTCCCTCGTCGCCTTCCAATTCTGTCACTATTT
66 AGAAGTATGAGAATTGATAGTTGGTGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
** * * * * ** *
4442557 GCTTCATTTCATCACAGTAGCTTATGTCAAGACGTTTCAATTGTACTAGACTTTGAGCAAGAGAA
131 GCTTCAACTCAGCACAATAGATTATCTCAAGACGTTTCAAGAGTACGAGACTTTGAGCAAGAGAA
* **
4442622 AGTGAAAAGAGTGATTTCAAACGTGGGAACTTTTTTATAGTCAAAACAACTAAGCTTTCAAGTCT
196 AGTGAAAAGAGTGATTTCAAACGTGGGAACTGTAGTATAGTCAAAACAACTAAGCTTTCAAGTCT
4442687 TACATGTTGGGTC
261 TACATGTTGGGTC
* * ** * *
4442700 GGAAAAATATACTCCAAACCATCACAAGTAGATATG-TAGA-GTTTTGTTAACTTTGGGAAGGAC
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCT-GACG-TCTCCTAACTCTGGGAAGCAC
* * *
4442763 AAAGAAGTATGAGAATTGATAGTAT-GTGATATTTCTCCCTTGTCACCTTCTAATTCTGTCACTG
64 AAAGAAGTATGAGAATTGATAGT-TGGTGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTA
* **
4442827 TTTGCTTCAACTCAGGACAATAGATTATCTCAAG-TTTTTCCAAGAGTACGAGACTTTGAGCAAG
128 TTTGCTTCAACTCAGCACAATAGATTATCTCAAGACGTTT-CAAGAGTACGAGACTTTGAGCAAG
* * **
4442891 AGAAAGTGAAAAGAGTGATTTCAAACGTGGGCAGTGTAGTATAGTCAATTCAACTAAGCTTTCAA
192 AGAAAGTGAAAAGAGTGATTTCAAACGTGGGAACTGTAGTATAGTCAAAACAACTAAGCTTTCAA
4442956 GTCTTACATGTTGGGT
257 GTCTTACATGTTGGGT
4442972 TGGCAATTCC
Statistics
Matches: 235, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
272 5 0.02
273 229 0.97
274 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (273 bp):
GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACGTCTCCTAACTCTGGGAAGCACAA
AGAAGTATGAGAATTGATAGTTGGTGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
GCTTCAACTCAGCACAATAGATTATCTCAAGACGTTTCAAGAGTACGAGACTTTGAGCAAGAGAA
AGTGAAAAGAGTGATTTCAAACGTGGGAACTGTAGTATAGTCAAAACAACTAAGCTTTCAAGTCT
TACATGTTGGGTC
Found at i:4445009 original size:17 final size:17
Alignment explanation
Indices: 4444987--4445034 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
4444977 AATCAAAAAT
4444987 TATTTTTAATAAGATAA
1 TATTTTTAATAAGATAA
4445004 TATTTTGTAATAA-ATAA
1 TATTTT-TAATAAGATAA
*
4445021 TATATTATAATAAG
1 TAT-TTTTAATAAG
4445035 CATTTTACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
TATTTTTAATAAGATAA
Found at i:4446036 original size:14 final size:14
Alignment explanation
Indices: 4446017--4446043 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4446007 TATTTTTAAT
4446017 ATTTTTATAAAAAC
1 ATTTTTATAAAAAC
4446031 ATTTTTATAAAAA
1 ATTTTTATAAAAA
4446044 TAATCTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTTATAAAAAC
Found at i:4449872 original size:30 final size:31
Alignment explanation
Indices: 4449838--4449896 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
4449828 TTAAATTACT
*
4449838 TTTATTTATTTT-AATTACTATGATTAATTA
1 TTTATTTATTTTAAATTACTATAATTAATTA
*
4449868 TTTATTTATTTTAAATTACTTTAATTAAT
1 TTTATTTATTTTAAATTACTATAATTAAT
4449897 GATATGGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (31 bp):
TTTATTTATTTTAAATTACTATAATTAATTA
Found at i:4450357 original size:15 final size:16
Alignment explanation
Indices: 4450337--4450366 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4450327 ACATTATGTG
4450337 ACAAAAA-TAAATAAA
1 ACAAAAAGTAAATAAA
4450352 ACAAAAAGTAAATAA
1 ACAAAAAGTAAATAA
4450367 CTAAACCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (16 bp):
ACAAAAAGTAAATAAA
Found at i:4451480 original size:21 final size:21
Alignment explanation
Indices: 4451431--4451481 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
4451421 TCATGTGATG
4451431 TCTGAAAATTATTCAGAGATA
1 TCTGAAAATTATTCAGAGATA
*
4451452 TCTAAAAATTATCTCA-AGAT-
1 TCTGAAAATTAT-TCAGAGATA
4451472 TCCTGAAAAT
1 T-CTGAAAAT
4451482 ATTTTATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.85
22 3 0.12
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (21 bp):
TCTGAAAATTATTCAGAGATA
Found at i:4451716 original size:20 final size:20
Alignment explanation
Indices: 4451693--4451732 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
4451683 AAAATTATGA
4451693 GATTTATTATAAGAAACTTT
1 GATTTATTATAAGAAACTTT
4451713 GATTTATTATAAGAAACTTT
1 GATTTATTATAAGAAACTTT
4451733 ATAACGTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (20 bp):
GATTTATTATAAGAAACTTT
Found at i:4461917 original size:84 final size:84
Alignment explanation
Indices: 4461776--4461946 Score: 315
Period size: 84 Copynumber: 2.0 Consensus size: 84
4461766 GCCAAGGTGA
* * *
4461776 TTGGCACAACATATTCCAGTTTTGCACATCGTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
1 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCAG
4461841 AGAGGAAGGGAAGAAGGCT
66 AGAGGAAGGGAAGAAGGCT
4461860 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCAG
1 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCAG
4461925 AGAGGAAGGGAAGAAGGCT
66 AGAGGAAGGGAAGAAGGCT
4461944 TTG
1 TTG
4461947 ATTCTATTTC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (84 bp):
TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCAG
AGAGGAAGGGAAGAAGGCT
Found at i:4464182 original size:23 final size:23
Alignment explanation
Indices: 4464125--4464171 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
4464115 CTCTAGCTGA
4464125 GATAACCTTTGAATGACATTAGG
1 GATAACCTTTGAATGACATTAGG
4464148 GATAACCTTTGAATGACATTAGG
1 GATAACCTTTGAATGACATTAGG
4464171 G
1 G
4464172 GAAGAGCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (23 bp):
GATAACCTTTGAATGACATTAGG
Found at i:4467920 original size:3 final size:3
Alignment explanation
Indices: 4467912--4467946 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4467902 TATCTCATCC
4467912 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
4467947 TTTTATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4469645 original size:16 final size:17
Alignment explanation
Indices: 4469620--4469655 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
4469610 CTTGAAATTA
*
4469620 AAATTGATATAATA-AT
1 AAATTAATATAATATAT
4469636 AAATTAATATAATATAT
1 AAATTAATATAATATAT
4469653 AAA
1 AAA
4469656 AGTTGGGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAATTAATATAATATAT
Found at i:4471323 original size:104 final size:99
Alignment explanation
Indices: 4471206--4471611 Score: 423
Period size: 96 Copynumber: 4.1 Consensus size: 99
4471196 TGTTGGTCTA
* * * * * *
4471206 TCAATGGCCGGCACCAGAAGACGAAAAAAGTAATAAAAAAATTTTCGCATGGCCTGCCAATGGTC
1 TCAATGGCAGGCACCAGTATACGAAAAAAGTAA-AAAAAAA-TTTCCCGTGGCCTGCCAATGGCC
4471271 GGCACTCCCTTTAATTTTTTTTTTTTTACTTTTGGCCTG
64 GGCAC-CCCTTTAA--TTTTTTTTTTTACTTTTGGCCTG
4471310 TCAATGGCAGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
1 TCAATGGCAGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
****
4471375 CACACCCTTTAA----AAAATTTACTTTTGGCCTG
66 CAC-CCCTTTAATTTTTTTTTTTACTTTTGGCCTG
* *
4471406 TCAATAGCCA-GCACCAGTATACG-AAAAAGT-AAAAAAAATTCCCCGTGGCCTGCCAATGGCCG
1 TCAAT-GGCAGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCG
*
4471468 AG-ACCCCTTTAATTTTTTTTTTTACTTTTGGTCTG
65 -GCACCCCTTTAATTTTTTTTTTTACTTTTGGCCTG
* * * * * * * * *
4471503 TCAATGGCTGACACGAGTATAGGAAAAAAGTAAAAAAAAAAATTCCTGTGGCCTGCCACTAGTCG
1 TCAATGGCAGGCACCAGTATACGAAAAAAGT-AAAAAAAAATTTCCCGTGGCCTGCCAATGGCCG
** *
4471568 GCACCCCTTTATATGATTTTTTTTTTGGTTTTGGTCTG
65 GCACCCCTTTA-AT--TTTTTTTTTTACTTTTGGCCTG
4471606 TCAATG
1 TCAATG
4471612 ACCGGCATTA
Statistics
Matches: 257, Mismatches: 31, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
93 8 0.03
94 33 0.13
95 8 0.03
96 35 0.14
97 32 0.12
98 7 0.03
99 1 0.00
100 35 0.14
101 2 0.01
102 33 0.13
103 33 0.13
104 30 0.12
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (99 bp):
TCAATGGCAGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
CACCCCTTTAATTTTTTTTTTTACTTTTGGCCTG
Found at i:4473670 original size:53 final size:53
Alignment explanation
Indices: 4473510--4473878 Score: 411
Period size: 53 Copynumber: 6.8 Consensus size: 53
4473500 AATACTTCTG
** * * * * *
4473510 ACACACTTTGCTTTCTTTCAATCTAATCTATTTCACTTTTTTTTTCTACACCTG
1 ACACACTTTTTTTTCATTCAATCTAATTTATTTCA-ATTTTTTTTCTACATCTA
* * *
4473564 ACACAATTTTATTTTTCATTCAATCTCATTTATTTCCATTTTATTTTTCTACATCTA
1 ACAC-ACTTT-TTTTTCATTCAATCTAATTTATTT-CAATTT-TTTTTCTACATCTA
* *
4473621 ACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTCTACATCTA
1 ACACACTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTA
* *
4473674 ACACACTTTTTTTTCATTC-GT-TACTTTATTTCAATTTTATTTTTCTACATCTA
1 ACACACTTTTTTTTCATTCAATCTAATTTATTTCAA-TTT-TTTTTCTACATCTA
* *
4473727 ACAC-CCTTTTTTTCATTCAATCTAATTTATTTCACTTTTTTTTCTACATCTA
1 ACACACTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTA
* * * *
4473779 ACACAATTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTCTACATCTG
1 ACACACTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTA
** ** *
4473832 ACACACTTTTTGAAATCATAAAATTTAATTTATTTCAATTTTTTTTC
1 ACACACTTTTT--TTTCATTCAATCTAATTTATTTCAATTTTTTTTC
4473879 AACGGCTTGA
Statistics
Matches: 273, Mismatches: 31, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
51 11 0.04
52 35 0.13
53 108 0.40
54 20 0.07
55 55 0.20
56 26 0.10
57 18 0.07
ACGTcount: A:0.24, C:0.21, G:0.01, T:0.54
Consensus pattern (53 bp):
ACACACTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTA
Found at i:4473765 original size:28 final size:28
Alignment explanation
Indices: 4473734--4473820 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
4473724 CTAACACCCT
4473734 TTTTTTCATTCAATCTAATTTATTTCAC
1 TTTTTTCATTCAATCTAATTTATTTCAC
*** *
4473762 TTTTTT--TTCTACATCTAACACAATT---
1 TTTTTTCATTC-A-ATCTAATTTATTTCAC
*
4473787 TTTTTTCATTCAATCTCATTTATTTCAC
1 TTTTTTCATTCAATCTAATTTATTTCAC
4473815 TTTTTT
1 TTTTTT
4473821 TTCTACATCT
Statistics
Matches: 43, Mismatches: 9, Indels: 14
0.65 0.14 0.21
Matches are distributed among these distances:
25 14 0.33
26 4 0.09
27 4 0.09
28 21 0.49
ACGTcount: A:0.23, C:0.18, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTTTTCATTCAATCTAATTTATTTCAC
Found at i:4473769 original size:30 final size:30
Alignment explanation
Indices: 4473733--4473823 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
4473723 TCTAACACCC
4473733 TTTTTTTCATTCAATCTAATTTATTTCACT
1 TTTTTTTCATTCAATCTAATTTATTTCACT
* * *
4473763 TTTTTTTC-TAC-ATCTAA--CA---CAAT
1 TTTTTTTCATTCAATCTAATTTATTTCACT
*
4473786 TTTTTTTCATTCAATCTCATTTATTTCACT
1 TTTTTTTCATTCAATCTAATTTATTTCACT
4473816 TTTTTTTC
1 TTTTTTTC
4473824 TACATCTGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
23 11 0.23
24 2 0.04
25 5 0.11
26 1 0.02
27 1 0.02
28 6 0.13
29 2 0.04
30 19 0.40
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTTTTTCATTCAATCTAATTTATTTCACT
Found at i:4473770 original size:105 final size:106
Alignment explanation
Indices: 4473521--4473878 Score: 454
Period size: 105 Copynumber: 3.3 Consensus size: 106
4473511 CACACTTTGC
* * * * *
4473521 TTTCTTTCAATCTAATCTATTTCACTTTTTTTTTCTACACCTGACACAATTTTATTTTTCATTCA
1 TTTCATTCAATCTAATTTATTTCA-ATTTTTTTTCTACATCTAACACAA-TTT-TTTTTCATTCA
4473586 ATCTCATTTATTTCCATTTTATTTTTCTACATCTAACACCCTTTTT
63 ATCTCATTTATTT-CATTTTATTTTTCTACATCTAACACCC-TTTT
* * *
4473632 TTTCATTCAATCTCATTTATTTCAATTTTTTTTCTACATCTAACACACTTTTTTTTCATTC-GT-
1 TTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTAACACAATTTTTTTTCATTCAATC
4473695 T-ACTTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTT
66 TCA-TTTATTTC-ATTTTATTTTTCTACATCTAACACCCTTTT
*
4473737 TTTCATTCAATCTAATTTATTTCACTTTTTTTTCTACATCTAACACAATTTTTTTTCATTCAATC
1 TTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTAACACAATTTTTTTTCATTCAATC
* * *
4473802 TCATTTATTTCACTTT-TTTTTCTACATCTGACACACTTTT
66 TCATTTATTTCATTTTATTTTTCTACATCTAACACCCTTTT
* ** *
4473842 TGAAATCATAAAATTTAATTTATTTCAATTTTTTTTC
1 T---TTCATTCAATCTAATTTATTTCAATTTTTTTTC
4473879 AACGGCTTGA
Statistics
Matches: 219, Mismatches: 20, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
105 87 0.40
106 39 0.18
107 10 0.05
108 39 0.18
109 3 0.01
110 20 0.09
111 21 0.10
ACGTcount: A:0.24, C:0.20, G:0.01, T:0.54
Consensus pattern (106 bp):
TTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTAACACAATTTTTTTTCATTCAATC
TCATTTATTTCATTTTATTTTTCTACATCTAACACCCTTTT
Found at i:4473830 original size:28 final size:27
Alignment explanation
Indices: 4473746--4473830 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 27
4473736 TTTTCATTCA
4473746 ATCTAATTTATTTCACTTTTTTTTCTAC
1 ATCT-ATTTATTTCACTTTTTTTTCTAC
** * *
4473774 ATCTA---A-CACAATTTTTTTTCATTC
1 ATCTATTTATTTCACTTTTTTTTC-TAC
4473798 AATCTCATTTATTTCACTTTTTTTTCTAC
1 -ATCT-ATTTATTTCACTTTTTTTTCTAC
4473827 ATCT
1 ATCT
4473831 GACACACTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
23 11 0.26
24 3 0.07
25 4 0.10
26 1 0.02
27 1 0.02
28 8 0.19
29 3 0.07
30 11 0.26
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (27 bp):
ATCTATTTATTTCACTTTTTTTTCTAC
Found at i:4473875 original size:158 final size:158
Alignment explanation
Indices: 4473575--4473878 Score: 423
Period size: 158 Copynumber: 1.9 Consensus size: 158
4473565 CACAATTTTA
* * **
4473575 TTTTTCATTCAATCTCATTTATTTCCATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTC
1 TTTTTCATTCAATCTAATTTATTTCCACTTTATTTTTCTACATCTAACACAATTTTTTTTCATTC
** ** *
4473640 AATCTCATTTATTTCAATTTTTTTTCTACATCTAACACACTTTTTTTTCATTCGTTACTTTATTT
66 AATCTCATTTATTTCAATTTTTTTTCTACATCTAACACACTTTTTAATCATAAGTTAATTTATTT
4473705 CAATTTTATTTTTCTACATCTAACACCCTT
131 CAA--TTATTTTTCTACATCTAACACCCTT
4473735 TTTTTCATTCAATCTAATTTATTT-CACTTT-TTTTTCTACATCTAACACAATTTTTTTTCATTC
1 TTTTTCATTCAATCTAATTTATTTCCACTTTATTTTTCTACATCTAACACAATTTTTTTTCATTC
* * *
4473798 AATCTCATTTATTTCACTTTTTTTTCTACATCTGACACACTTTTTGAAATCATAAAATTTAATTT
66 AATCTCATTTATTTCAATTTTTTTTCTACATCTAACACACTTTTT--AATCAT--AAGTTAATTT
*
4473863 ATTTCAATTTTTTTTC
127 ATTTCAATTATTTTTC
4473879 AACGGCTTGA
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
158 74 0.58
159 5 0.04
160 35 0.28
162 13 0.10
ACGTcount: A:0.24, C:0.20, G:0.01, T:0.55
Consensus pattern (158 bp):
TTTTTCATTCAATCTAATTTATTTCCACTTTATTTTTCTACATCTAACACAATTTTTTTTCATTC
AATCTCATTTATTTCAATTTTTTTTCTACATCTAACACACTTTTTAATCATAAGTTAATTTATTT
CAATTATTTTTCTACATCTAACACCCTT
Found at i:4474362 original size:99 final size:97
Alignment explanation
Indices: 4474196--4474615 Score: 374
Period size: 99 Copynumber: 4.1 Consensus size: 97
4474186 TGTTGGTCTA
* * * * * * *
4474196 TCAATGGCCGGCACCAGAAGATGAAAAAAGTAATAAAAAAATTTCGCATGGCCTGTCAATGGTCG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAA-AAAAAAATTTCCCGTGGCCTGCCAATGGCCG
4474261 GCACTCCCTTTAACTTTTTTTTTACTTTTGGCCTG
65 GCAC-CCCTTTAA-TTTTTTTTTACTTTTGGCCTG
4474296 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
****** *
4474361 CACCCCCTTTGAAAAAAAATTAACTTTTGGCCTG
66 CA-CCCCTTT-AATTTTTTTTTACTTTTGGCCTG
* * * *
4474395 TCAATAGCCAGCACCAATATACGAAAAAAGTAAAAAAGAAA-TCCCCGTGGCCTGCCAATGGCCG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAA-AAATTTCCCGTGGCCTGCCAATGGCCG
* *
4474459 ACACCCTCTTTTAATTTTTTTTTTACTTTTGGTCTG
65 GCACCC-C-TTTAA-TTTTTTTTTACTTTTGGCCTG
* * * * * * *
4474495 TCAATGGCTGACACGAGTATAGGAAAAAAGTAAAAAAAAAATATATTTCCTGTAGCCTGCCACTG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGT---AAAAAAA-A-ATTTCCCGTGGCCTGCCAATG
* * * *
4474560 GTCGGCAACCCTTTATATGATTTTTTTTTTTAGTTTTGGTCTG
61 GCCGGC-ACCCCTT-TA--A--TTTTTTTTTACTTTTGGCCTG
4474603 TCAATGGCCGGCA
1 TCAATGGCCGGCA
4474616 TTAAACTTTA
Statistics
Matches: 259, Mismatches: 44, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
98 3 0.01
99 111 0.43
100 76 0.29
102 1 0.00
103 7 0.03
104 3 0.01
105 21 0.08
106 4 0.02
107 1 0.00
108 32 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (97 bp):
TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCCCGTGGCCTGCCAATGGCCGG
CACCCCTTTAATTTTTTTTTACTTTTGGCCTG
Found at i:4476708 original size:52 final size:54
Alignment explanation
Indices: 4476516--4476883 Score: 426
Period size: 53 Copynumber: 6.8 Consensus size: 54
4476506 AATACTTCTG
* * * * * * *
4476516 ACACACTTTGTTTTCTTTCAATCTAATCTATTTCACTTTTTTTTTCTACACCTG
1 ACACACTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTA
*
4476570 ACACACTTTTATTTTTCATTCAATCTCATTTATTTCCATTTTATTTTTCTACATCTA
1 ACACAC-TTT-TTTTTCATTCAATCTCATTTATTTCAATTTT-TTTTTCTACATCTA
*
4476627 ACAC-CTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTATATCTA
1 ACACACTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTA
* *
4476680 ACACACTTTTTTTTCATT---TGTTACTTTATTTCAATTTTATTTTTCTACATCTA
1 ACACACTTTTTTTTCATTCAATCTCA-TTTATTTCAATTTT-TTTTTCTACATCTA
* * *
4476733 ACACCCTTTTTTTTCATTCAATCTAATTTATTTC-ACTTTTTTTTCTACATCTA
1 ACACACTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTA
* * *
4476786 ACACA-ATTTTTTTCATTCAATCTCATTTATTTC-ACTTTTTTTTCTACATCTG
1 ACACACTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTA
** * * *
4476838 ACACACTTTTTGAAATCATTAAATTTAATTTATTTCAATTTTTTTT
1 ACACACTTTTT--TTTCATTCAATCTCATTTATTTCAATTTTTTTT
4476884 CAAAGGCTTG
Statistics
Matches: 273, Mismatches: 28, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
51 3 0.01
52 63 0.23
53 69 0.25
54 53 0.19
55 32 0.12
56 37 0.14
57 16 0.06
ACGTcount: A:0.24, C:0.20, G:0.01, T:0.55
Consensus pattern (54 bp):
ACACACTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTA
Found at i:4476772 original size:29 final size:29
Alignment explanation
Indices: 4476740--4476827 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
4476730 CTAACACCCT
4476740 TTTTTTTCATTCAATCTAATTTATTTCAC
1 TTTTTTTCATTCAATCTAATTTATTTCAC
* * *
4476769 TTTTTTTTC-TAC-ATCTAA--CA---CAA
1 -TTTTTTTCATTCAATCTAATTTATTTCAC
*
4476792 TTTTTTTCATTCAATCTCATTTATTTCAC
1 TTTTTTTCATTCAATCTAATTTATTTCAC
4476821 TTTTTTT
1 TTTTTTT
4476828 TCTACATCTG
Statistics
Matches: 44, Mismatches: 7, Indels: 15
0.67 0.11 0.23
Matches are distributed among these distances:
22 8 0.18
23 4 0.09
24 5 0.11
26 2 0.05
28 6 0.14
29 11 0.25
30 8 0.18
ACGTcount: A:0.23, C:0.18, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTTTTCATTCAATCTAATTTATTTCAC
Found at i:4476774 original size:30 final size:30
Alignment explanation
Indices: 4476738--4476829 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
4476728 ATCTAACACC
4476738 CTTTTTTTTCATTCAATCTAATTTATTTCA
1 CTTTTTTTTCATTCAATCTAATTTATTTCA
* *
4476768 CTTTTTTTTC-TAC-ATCTAA--CA---CA
1 CTTTTTTTTCATTCAATCTAATTTATTTCA
* *
4476791 -ATTTTTTTCATTCAATCTCATTTATTTCA
1 CTTTTTTTTCATTCAATCTAATTTATTTCA
4476820 CTTTTTTTTC
1 CTTTTTTTTC
4476830 TACATCTGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.17
23 4 0.09
24 5 0.11
26 2 0.04
28 6 0.13
29 4 0.09
30 18 0.38
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (30 bp):
CTTTTTTTTCATTCAATCTAATTTATTTCA
Found at i:4476884 original size:107 final size:105
Alignment explanation
Indices: 4476516--4476884 Score: 422
Period size: 107 Copynumber: 3.4 Consensus size: 105
4476506 AATACTTCTG
* * * * * *
4476516 ACACACTTTGTTTTCTTTCAATCTAATCTATTTCACTTTTTTTTTCTACACCTGACACACTTTTA
1 ACAC-CTTTTTTTTCATTCAATCTAATTTATTTCA-ATTTTTTTTCTACATCT-A-ACACATTT-
4476581 TTTTTCATTCAATCTCATTTATTTCCATTTTATTTTTCTACATCTA
61 TTTTTCATTCAATCTCATTTATTT-CATTTTATTTTTCTACATCTA
* *
4476627 ACACCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTTTTTTCTATATCTAACACACTTTTTT
1 ACACCTTTTTTTTCATTCAATCTAATTTATTTCAA-TTTTTTTTCTACATCTAACACA-TTTTTT
* *
4476692 TTCATT---TGTTACTTTATTTCAATTTTATTTTTCTACATCTA
64 TTCATTCAATCTCA-TTTATTTC-ATTTTATTTTTCTACATCTA
* *
4476733 ACACCCTTTTTTTTCATTCAATCTAATTTATTTCACTTTTTTTTCTACATCTAACACAATTTTTT
1 ACA-CCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTAACACATTTTTTT
* *
4476798 TCATTCAATCTCATTTATTTCACTTT-TTTTTCTACATCTG
65 TCATTCAATCTCATTTATTTCATTTTATTTTTCTACATCTA
** * *
4476838 ACACACTTTTTGAAATCATTAAATTTAATTTATTTCAATTTTTTTTC
1 ACAC-CTTTTT--TTTCATTCAATCTAATTTATTTCAATTTTTTTTC
4476885 AAAGGCTTGA
Statistics
Matches: 224, Mismatches: 23, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
104 1 0.00
105 37 0.17
106 55 0.25
107 67 0.30
108 16 0.07
109 4 0.02
110 40 0.18
111 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.01, T:0.55
Consensus pattern (105 bp):
ACACCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTTTTTCTACATCTAACACATTTTTTTT
CATTCAATCTCATTTATTTCATTTTATTTTTCTACATCTA
Found at i:4477387 original size:97 final size:98
Alignment explanation
Indices: 4477201--4477611 Score: 407
Period size: 97 Copynumber: 4.1 Consensus size: 98
4477191 TGTTGGTCTA
* * * * *
4477201 TCAATGGCCGGCACCAGAAGACGGAAAAAGTAATAAAAAAATTT-TCGCATGGCCTGTCAATGGT
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAA-AAAAAAATTTCTCG--TGGCCTGCCAATGGC
*
4477265 CGGCACTCCCTTTAATTTTTTTTTACTTTTGGCCTG
63 CGGCACCCCCTTTAATTTTTTTTTACTTTTGGCCTG
4477301 TCAATGGCCGGCACCAGTATACGAAAAAAGT-AAAAAAAATTTCTCGTGGCCTGCCAATGGCCGG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCTCGTGGCCTGCCAATGGCCGG
*****
4477365 CACCCCCTTTGAA-AAAAATTTACTTTTGGCCTG
66 CACCCCCTTT-AATTTTTTTTTACTTTTGGCCTG
* * * * *
4477398 TCAATAGCCAGCACCAGTATACGAAAAAAGTAAAAAAAAAATCCCCGTGGCCTGCCAATGGCCTG
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCTCGTGGCCTGCCAATGGCC-G
* * *
4477463 ACACCCGCTTTTAATTTTTTTTTTACTTTTGGTCTG
65 GCACCC-CCTTTAA-TTTTTTTTTACTTTTGGCCTG
* * * * * * *
4477499 TCAATGGCTGACACGAGTATAGGAAAAAAGTAAAAAAAAATATT-TCCTGTAGCCTGCCACTGGT
1 TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAAT-TTCT-C-GTGGCCTGCCAATGGC
* * *
4477563 CGGCACCCCTTTATATGATTTTTTTTTTAGTTTTGGTCTG
63 CGGCACCCCCTT-TA--A-TTTTTTTTTACTTTTGGCCTG
4477603 TCAATGGCC
1 TCAATGGCC
4477612 AGCATTAAAC
Statistics
Matches: 259, Mismatches: 39, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
97 69 0.27
98 40 0.15
99 12 0.05
100 32 0.12
101 52 0.20
102 10 0.04
103 14 0.05
104 30 0.12
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (98 bp):
TCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAATTTCTCGTGGCCTGCCAATGGCCGG
CACCCCCTTTAATTTTTTTTTACTTTTGGCCTG
Found at i:4477605 original size:104 final size:101
Alignment explanation
Indices: 4477275--4477610 Score: 310
Period size: 101 Copynumber: 3.3 Consensus size: 101
4477265 CGGCACTCCC
* * * *
4477275 TTTAA-TTTTTTTTTACTTTTGGCCTGTCAATGGCCGGCACCAGTATACGAAAAAAGT-AAAAAA
1 TTTAATTTTTTTTTTACTTTTGGTCTGTCAATGGCTGACACGAGTATACGAAAAAAGTAAAAAAA
* * * * * *
4477338 AATTTCTCGTGGCCTGCCAATGGCC-GGCACCCCCT
66 AAATCCCCGTAGCCTGCCAATGGCCTGACACCCGCT
* ***** * * * *
4477373 TTGAA--AAAAATTTACTTTTGGCCTGTCAATAGC-CAGCACCAGTATACGAAAAAAGTAAAAAA
1 TTTAATTTTTTTTTTACTTTTGGTCTGTCAATGGCTGA-CACGAGTATACGAAAAAAGTAAAAAA
*
4477435 AAAATCCCCGTGGCCTGCCAATGGCCTGACACCCGCT
65 AAAATCCCCGTAGCCTGCCAATGGCCTGACACCCGCT
*
4477472 TTTAATTTTTTTTTTACTTTTGGTCTGTCAATGGCTGACACGAGTATAGGAAAAAAGTAAAAAAA
1 TTTAATTTTTTTTTTACTTTTGGTCTGTCAATGGCTGACACGAGTATACGAAAAAAGTAAAAAAA
* * * * *
4477537 AATATTTCCTGTAGCCTGCCACTGGTC-GGCACCC-CT
66 AA-A-TCCCCGTAGCCTGCCAATGGCCTGACACCCGCT
*
4477573 TTATATGATTTTTTTTTTAGTTTTGGTCTGTCAATGGC
1 TT-TA--ATTTTTTTTTTACTTTTGGTCTGTCAATGGC
4477611 CAGCATTAAA
Statistics
Matches: 195, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
97 42 0.22
98 32 0.16
99 12 0.06
101 52 0.27
102 10 0.05
103 17 0.09
104 30 0.15
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (101 bp):
TTTAATTTTTTTTTTACTTTTGGTCTGTCAATGGCTGACACGAGTATACGAAAAAAGTAAAAAAA
AAATCCCCGTAGCCTGCCAATGGCCTGACACCCGCT
Found at i:4478747 original size:55 final size:54
Alignment explanation
Indices: 4478662--4478988 Score: 463
Period size: 53 Copynumber: 6.2 Consensus size: 54
4478652 AATACTTCTG
* * * * * *
4478662 ACACTTTTTTTCCTTTCAATCTAATCTATTTCACTTTTTTTTTCTACACCTGAC
1 ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
*
4478716 ACACTTTATTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAAC
1 ACACTTT-TTTTTCATTCAATCTCATTTATTTCACTTTT-TTTTTCTACATCTAAC
* * *
4478772 ACCCTTTTTTTCCATTCAATCTCATTTATTTCAATTTTTTTTTCTACATCTAAC
1 ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
4478826 AC-CTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTT-TACATCTAAC
1 ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
*
4478878 ACACTTTTTTTTCATTCAATCTCATTTATTTCAC-TTTTTTTTCTACATCTAAA
1 ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
* *
4478931 ACACTTTTTTTTC-TTAAATCTCATTTATTTCA---TTTTTTT-TACATCTGAC
1 ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
4478980 ACACTTTTT
1 ACACTTTTT
4478989 GAAATCATTA
Statistics
Matches: 254, Mismatches: 15, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
49 17 0.07
50 7 0.03
52 38 0.15
53 91 0.36
54 25 0.10
55 56 0.22
56 20 0.08
ACGTcount: A:0.23, C:0.22, G:0.01, T:0.55
Consensus pattern (54 bp):
ACACTTTTTTTTCATTCAATCTCATTTATTTCACTTTTTTTTTCTACATCTAAC
Found at i:4487683 original size:17 final size:17
Alignment explanation
Indices: 4487661--4487694 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4487651 ATCCACTAAT
*
4487661 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
4487678 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
4487695 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:4492320 original size:17 final size:17
Alignment explanation
Indices: 4492298--4492331 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4492288 ATCCACTAAT
*
4492298 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
4492315 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
4492332 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:4493725 original size:84 final size:84
Alignment explanation
Indices: 4493584--4493838 Score: 483
Period size: 84 Copynumber: 3.0 Consensus size: 84
4493574 AGCCAAGTGA
* *
4493584 TTGGCACAACATATTCCAGTTTTGCACAGCGTTTGATGGAAAGAGTATTCAATTTGGGCAAGCCG
1 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
4493649 AGAGGAAGGGAAGAAGGCT
66 AGAGGAAGGGAAGAAGGCT
4493668 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
1 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
4493733 AGAGGAAGGGAAGAAGGCT
66 AGAGGAAGGGAAGAAGGCT
*
4493752 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTTTTCAATTTGGGCAAGCGG
1 TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
4493817 AGAGGAAGGGAAGAAGGCT
66 AGAGGAAGGGAAGAAGGCT
4493836 TTG
1 TTG
4493839 ATTCTATTTC
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 168 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (84 bp):
TTGGCACAACATATTCCAGTTTTGCACAGCCTTTGATGGAAAGAGTATTCAATTTGGGCAAGCGG
AGAGGAAGGGAAGAAGGCT
Found at i:4497618 original size:17 final size:17
Alignment explanation
Indices: 4497585--4497631 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
4497575 ATCAAAAATC
*
4497585 ATTTTTAATAAGGTAAT
1 ATTTTTAATAAGATAAT
4497602 ATTTTGTAATAA-ATAAT
1 ATTTT-TAATAAGATAAT
*
4497619 ATATTATAATAAG
1 AT-TTTTAATAAG
4497632 CATTTTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (17 bp):
ATTTTTAATAAGATAAT
Found at i:4498543 original size:14 final size:16
Alignment explanation
Indices: 4498526--4498565 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
4498516 TTAATAATTT
4498526 AATATTTT-TAT-AAA
1 AATATTTTCTATAAAA
4498540 AATATTTTCTATAAAA
1 AATATTTTCTATAAAA
4498556 AATATTTTCT
1 AATATTTTCT
4498566 TAATATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 8 0.33
15 3 0.12
16 13 0.54
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (16 bp):
AATATTTTCTATAAAA
Found at i:4498615 original size:14 final size:14
Alignment explanation
Indices: 4498598--4498624 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4498588 ATGGTTTAAT
4498598 ATTTTTATAAAAAC
1 ATTTTTATAAAAAC
4498612 ATTTTTATAAAAA
1 ATTTTTATAAAAA
4498625 TAATCTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTTATAAAAAC
Found at i:4500282 original size:10 final size:10
Alignment explanation
Indices: 4500262--4500303 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
4500252 ACCAAAGGTT
4500262 TAAAT-AAAA
1 TAAATAAAAA
4500271 TAAATAAAAA
1 TAAATAAAAA
*
4500281 TAAATAAGAA
1 TAAATAAAAA
* *
4500291 GAAATAATAA
1 TAAATAAAAA
4500301 TAA
1 TAA
4500304 TAACATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 5 0.18
10 23 0.82
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:4501806 original size:44 final size:42
Alignment explanation
Indices: 4501757--4502080 Score: 199
Period size: 44 Copynumber: 7.6 Consensus size: 42
4501747 ATCTACTCTG
* * *
4501757 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCC-TTA-TTCAATCTGCTCCA
* * ** * *
4501801 CTGTAACTTCAGGGAGATAGGATAGTGTCTTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCCT-TATTCAATCTGCTCCA
* * *** *
4501844 CTGTAATCTCAGGGAGATAAGATTTCTGGCCTCGATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGA-TCCT-TATTCAATCTGCTCCA
* * * * *
4501888 CTGTAACCTCAGAGAGATAAGAT-CTGAAATTTTTAGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TATTCAATCTGCTCCA
* * ** * * *
4501933 CTGTAATCTCAGGGAAATAAGA-CCTGGTGCGATCTGCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCTTATTCAATCTGCTCCA
* * *
4501974 CTGTAACTTCAGAGAGATAAGATCC-T-TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTATTCAATCTGCTCCA
* * * *
4502013 CTGTAACTTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCT-TATTCAATCTGCTCCA
*
4502057 CTGTAATCTCAGGGAGATAAGATC
1 CTGTAACCTCAGGGAGATAAGATC
4502081 TGCAATTCTT
Statistics
Matches: 211, Mismatches: 57, Indels: 25
0.72 0.19 0.09
Matches are distributed among these distances:
39 28 0.13
40 3 0.01
41 26 0.12
42 5 0.02
43 35 0.17
44 84 0.40
45 30 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (42 bp):
CTGTAACCTCAGGGAGATAAGATCCTTATTCAATCTGCTCCA
Found at i:4501992 original size:86 final size:87
Alignment explanation
Indices: 4501835--4502124 Score: 238
Period size: 86 Copynumber: 3.4 Consensus size: 87
4501825 GTGTCTTCAA
* * *
4501835 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTCGATCTGCTCCACTGTAACCTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGA-TCCTGG-CTCGATCTGCTCCACTGTAACCTCAG
4501900 AGAGATAAGATCTGAAATTTTTAG
64 AGAGATAAGATCTGAAATTTTTAG
* * *
4501924 TCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCTGG-TGCGATCTGCTCTACTGTAACTTCAGA
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCCTGGCT-CGATCTGCTCCACTGTAACCTCAGA
* *
4501987 GAGATAAGATC------CTTTAA
65 GAGATAAGATCTGAAATTTTTAG
* * * * *** * * *
4502004 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATATTCAATCTGCTCCGCTGTAATCTCA
1 TCTGCTCCACTGTAATC-TCAGGGAAATAAGA-TCCT-GGCTCGATCTGCTCCACTGTAACCTCA
* * *
4502068 GGGAGATAAGATCTGCAATTCTTTGG
63 GAGAGATAAGATCTGAAATT-TTTAG
* * *
4502094 TCTGTTCCACCGTAATCTCAGGGGAATAAGA
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGA
4502125 CCTTTTATAA
Statistics
Matches: 157, Mismatches: 30, Indels: 27
0.73 0.14 0.13
Matches are distributed among these distances:
79 1 0.01
80 29 0.18
82 2 0.01
83 30 0.19
84 1 0.01
85 1 0.01
86 34 0.22
87 4 0.03
89 28 0.18
90 26 0.17
91 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (87 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAAGATCCTGGCTCGATCTGCTCCACTGTAACCTCAGAG
AGATAAGATCTGAAATTTTTAG
Found at i:4514262 original size:20 final size:19
Alignment explanation
Indices: 4514225--4514270 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
4514215 ATATATGTAT
4514225 ATATAATGAGTGAAAAATA
1 ATATAATGAGTGAAAAATA
4514244 ATAATAAT-AGTGAATAAATA
1 AT-ATAATGAGTGAA-AAATA
4514264 ATATAAT
1 ATATAAT
4514271 CAATAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (19 bp):
ATATAATGAGTGAAAAATA
Found at i:4530472 original size:10 final size:10
Alignment explanation
Indices: 4530452--4530493 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
4530442 ACCAAAGGTT
4530452 TAAAT-AAAA
1 TAAATAAAAA
4530461 TAAATAAAAA
1 TAAATAAAAA
*
4530471 TAAATAAGAA
1 TAAATAAAAA
* *
4530481 GAAATAATAA
1 TAAATAAAAA
4530491 TAA
1 TAA
4530494 TAACATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 5 0.18
10 23 0.82
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:4533399 original size:59 final size:60
Alignment explanation
Indices: 4533287--4533400 Score: 133
Period size: 59 Copynumber: 1.9 Consensus size: 60
4533277 ACTTTACAAG
* * * *
4533287 TTTTCTTAATTTGATACCTAGGCATTTTTTGGGTTCAATTTAGTACGTGAACTTGCACTT
1 TTTTCTTAATTTGATACCTAAGCATTTTTTAGGTTCAATTTAGCACCTGAACTTGCACTT
* ** *
4533347 TTTTC-TAATTTGGTACCTAAGTTTTTTTTAGGTTCAATTTGGCACCCT-AACTTG
1 TTTTCTTAATTTGATACCTAAGCATTTTTTAGGTTCAATTTAGCA-CCTGAACTTG
4533401 TTAAATGATA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
59 38 0.84
60 7 0.16
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (60 bp):
TTTTCTTAATTTGATACCTAAGCATTTTTTAGGTTCAATTTAGCACCTGAACTTGCACTT
Found at i:4533921 original size:26 final size:27
Alignment explanation
Indices: 4533872--4533932 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
4533862 GAAAAATGTT
*
4533872 AATTTCAAGTACCAAAATGGAAAATAA
1 AATTTCAAGTACCAAAATGGAAAAAAA
* **
4533899 AATTT-AAGTACCAAATTTTAAAAAAA
1 AATTTCAAGTACCAAAATGGAAAAAAA
*
4533925 AATATCAA
1 AATTTCAA
4533933 ATTTAAGTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (27 bp):
AATTTCAAGTACCAAAATGGAAAAAAA
Found at i:4535898 original size:10 final size:9
Alignment explanation
Indices: 4535878--4535903 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4535868 AATAAGTTAT
4535878 AAAAAATAA
1 AAAAAATAA
4535887 AAAAAATAA
1 AAAAAATAA
4535896 AAAAAATA
1 AAAAAATA
4535904 TGTATGTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:4546292 original size:29 final size:29
Alignment explanation
Indices: 4546259--4546320 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
4546249 ATAGCATGGA
* ** *
4546259 CACACTCCCATGTGTTTGTCCATGTGGCT
1 CACACGCCCATGTCCTTGCCCATGTGGCT
*
4546288 CACACGCCCATGTCCTTGCCCGTGTGGCT
1 CACACGCCCATGTCCTTGCCCATGTGGCT
4546317 CACA
1 CACA
4546321 TGGCCTAGGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.37, G:0.21, T:0.27
Consensus pattern (29 bp):
CACACGCCCATGTCCTTGCCCATGTGGCT
Found at i:4548301 original size:27 final size:27
Alignment explanation
Indices: 4548263--4548328 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
4548253 AACTAATATG
4548263 AAATGACTGTTACAACCCT-ACATGGTA
1 AAATGACTGTTA-AACCCTCACATGGTA
** *
4548290 AAATGACTGTTATGCCCTCACGTGGTA
1 AAATGACTGTTAAACCCTCACATGGTA
*
4548317 AAATCACTGTTA
1 AAATGACTGTTA
4548329 TGCCCCTAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (27 bp):
AAATGACTGTTAAACCCTCACATGGTA
Found at i:4548345 original size:27 final size:27
Alignment explanation
Indices: 4548288--4548347 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
4548278 CCCTACATGG
* * *
4548288 TAAAATGACTGTTATGCCCTCACGTGG
1 TAAAATCACTGTTATGCCCTCAAGTGA
*
4548315 TAAAATCACTGTTATGCCC-CTAAGTTA
1 TAAAATCACTGTTATGCCCTC-AAGTGA
4548342 TAAAAT
1 TAAAAT
4548348 GATTGTATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (27 bp):
TAAAATCACTGTTATGCCCTCAAGTGA
Found at i:4551388 original size:9 final size:9
Alignment explanation
Indices: 4551374--4551398 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4551364 GGGTCTAGCA
4551374 CTTTAATTT
1 CTTTAATTT
4551383 CTTTAATTT
1 CTTTAATTT
4551392 CTTTAAT
1 CTTTAAT
4551399 CCTTACTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (9 bp):
CTTTAATTT
Found at i:4553583 original size:16 final size:16
Alignment explanation
Indices: 4553562--4553631 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
4553552 TTTGGTTCGC
* *
4553562 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* *
4553578 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
4553594 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
4553610 CGTAATAGAATAGAGG
1 TGTAATGGAATAGAGG
4553626 TGTAAT
1 TGTAAT
4553632 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.33, C:0.01, G:0.34, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:4553666 original size:45 final size:41
Alignment explanation
Indices: 4553611--4553719 Score: 114
Period size: 45 Copynumber: 2.6 Consensus size: 41
4553601 GAATAGAGGC
*
4553611 GTAATAGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAAT
1 GTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T---T
* * ***
4553656 GTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTT
1 GTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
4553696 G-AATGGAATAGAGGTGTAATAGCA
1 GTAATGGAATAGAGGTGTAATAGCA
4553720 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (41 bp):
GTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
Found at i:4553886 original size:18 final size:17
Alignment explanation
Indices: 4553865--4553899 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4553855 TTATTATTAA
*
4553865 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
4553883 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
4553900 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:4553953 original size:157 final size:157
Alignment explanation
Indices: 4553752--4554068 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
4553742 TAGAATACCC
* *
4553752 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAATATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
4553817 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
4553882 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
4553909 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
4553974 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
4554039 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
4554066 TTA
1 TTA
4554069 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:4554039 original size:16 final size:16
Alignment explanation
Indices: 4554002--4554043 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
4553992 TTAATCATAT
*
4554002 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
4554018 TT-AAATATATTATAA
1 TTAAAATATATTATAA
4554033 TTAAAATATAT
1 TTAAAATATAT
4554044 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:4554050 original size:14 final size:15
Alignment explanation
Indices: 4554011--4554052 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4554001 TTTAAACATA
*
4554011 ATTATTATTAAATAT
1 ATTATAATTAAATAT
4554026 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
4554040 A-TATAATTTAATA
1 ATTATAATTAAATA
4554053 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:4554170 original size:14 final size:15
Alignment explanation
Indices: 4554121--4554172 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
4554111 GTAAAATATA
4554121 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
4554136 TATTAAATATATTAT
1 AATTAAATATATTAT
4554151 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
4554164 AATTTAATA
1 AATTAAATA
4554173 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:4554290 original size:14 final size:15
Alignment explanation
Indices: 4554241--4554292 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
4554231 GTAAAATATA
4554241 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
4554256 TATTAAATATATTAT
1 AATTAAATATATTAT
4554271 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
4554284 AATTTAATA
1 AATTAAATA
4554293 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:4554428 original size:120 final size:120
Alignment explanation
Indices: 4554005--4554417 Score: 749
Period size: 120 Copynumber: 3.4 Consensus size: 120
4553995 ATCATATTTA
4554005 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
4554070 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
4554125 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
4554190 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
4554245 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
4554310 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT
* * *
4554365 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
4554418 TAAAATAATT
Statistics
Matches: 286, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 3 0.01
120 281 0.98
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:4557900 original size:24 final size:23
Alignment explanation
Indices: 4557859--4557909 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
4557849 ACAGAGAAAT
4557859 AATT-AATTATTTAAATATT-TA
1 AATTAAATTATTTAAATATTATA
*
4557880 ATATTAAATTATTTTATATATTATA
1 A-ATTAAATTA-TTTAAATATTATA
4557905 AATTA
1 AATTA
4557910 TGTGACACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 3 0.12
23 5 0.20
24 13 0.52
25 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTAAATTATTTAAATATTATA
Found at i:4564902 original size:17 final size:17
Alignment explanation
Indices: 4564880--4564913 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4564870 AAACAGTTTT
4564880 GAAATAAACAATATAAA
1 GAAATAAACAATATAAA
4564897 GAAATAAACAATATAAA
1 GAAATAAACAATATAAA
4564914 CAATTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
GAAATAAACAATATAAA
Found at i:4564912 original size:9 final size:9
Alignment explanation
Indices: 4564883--4564922 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
4564873 CAGTTTTGAA
4564883 ATAAACAAT
1 ATAAACAAT
*
4564892 ATAAAGAA-
1 ATAAACAAT
4564900 ATAAACAAT
1 ATAAACAAT
4564909 ATAAACAAT
1 ATAAACAAT
*
4564918 TTAAA
1 ATAAA
4564923 TTACATAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.68, C:0.07, G:0.03, T:0.23
Consensus pattern (9 bp):
ATAAACAAT
Found at i:4576554 original size:273 final size:273
Alignment explanation
Indices: 4576067--4576611 Score: 722
Period size: 273 Copynumber: 2.0 Consensus size: 273
4576057 CATCGACGTT
*
4576067 GGAAAAATATACTCCAAACCATAACAATTAGATATGCTGACATCTCCTAACTCTGGGAAGCACAA
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACATCTCCTAACTCTGGGAAGCACAA
* * * * *
4576132 AGAATTATGAGAATTGATGGTTGGTGATATTTCTCCCTCGTCGCCTTCCAATTCTGTCACTATTT
66 AGAAGTATGAGAATTGATAGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
* * * * **
4576197 GCTTCATTTCATCACAGTAACTTATGTCAAGACGTTTCAATTGTACTAGACTTTGAGCAAGAGAA
131 GCTTCAATTCAGCACAATAACTTATCTCAAGACGTTTCAAGAGTACTAGACTTTGAGCAAGAGAA
* **
4576262 AGTGAAAAGAGTGATTTCAAACGTGGGCACTTTTTTATAGTCAAAACAACTAAACTTTCAAGTCT
196 AGTGAAAAGAGTGATTTCAAACGTGGGCACTGTAGTATAGTCAAAACAACTAAACTTTCAAGTCT
4576327 TACATGTTGGGTC
261 TACATGTTGGGTC
* * * ** * *
4576340 GGAAAAATATACTCCCAACCATCACAAGTAGATATG-TAGAGC-TTTGTTAACTTTGGGAAGGAC
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCT-GA-CATCTCCTAACTCTGGGAAGCAC
* *
4576403 AAAGAAGTATGAGAATTGCTAGTCGATGATATTTCTCCCTCGTCACCTTCTAATTCTGTCACTAT
64 AAAGAAGTATGAGAATTGATAGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTAT
* **
4576468 TTGCTTCAATTCAGGACAATAGA-TTATCTCAAG-TTTTTCCAAGAGTA-TGAGACTTTGAGCAA
129 TTGCTTCAATTCAGCACAATA-ACTTATCTCAAGACGTTT-CAAGAGTACT-AGACTTTGAGCAA
* * ** *
4576530 GAGAAAGTGAAAAGAGTGATTTCAAACGTGGGCAGTGTAGTATGGTCAATTCAACTAAGCTTTCA
191 GAGAAAGTGAAAAGAGTGATTTCAAACGTGGGCACTGTAGTATAGTCAAAACAACTAAACTTTCA
4576595 AGTCTTACATGTTGGGT
256 AGTCTTACATGTTGGGT
4576612 TGGCAATTCC
Statistics
Matches: 235, Mismatches: 32, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
272 5 0.02
273 228 0.97
274 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (273 bp):
GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACATCTCCTAACTCTGGGAAGCACAA
AGAAGTATGAGAATTGATAGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
GCTTCAATTCAGCACAATAACTTATCTCAAGACGTTTCAAGAGTACTAGACTTTGAGCAAGAGAA
AGTGAAAAGAGTGATTTCAAACGTGGGCACTGTAGTATAGTCAAAACAACTAAACTTTCAAGTCT
TACATGTTGGGTC
Found at i:4578534 original size:31 final size:32
Alignment explanation
Indices: 4578495--4578567 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
4578485 AAAAGATTAA
*
4578495 GTACCAAATTAAGA-AAAAATGTTAAG-TCTAG
1 GTACCAAATTAAGAGAAAAATGTCAAGTTC-AG
*
4578526 GTGCCAAATTAAGAGAAAAATGTCAAGTTCAG
1 GTACCAAATTAAGAGAAAAATGTCAAGTTCAG
4578558 GTACCAAATT
1 GTACCAAATT
4578568 TGACAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 13 0.35
32 22 0.59
33 2 0.05
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (32 bp):
GTACCAAATTAAGAGAAAAATGTCAAGTTCAG
Found at i:4579379 original size:17 final size:17
Alignment explanation
Indices: 4579357--4579393 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
4579347 AATCAAAAAT
4579357 TATTTT-TAATAAGATAA
1 TATTTTGTAATAA-ATAA
4579374 TATTTTGTAATAAATAA
1 TATTTTGTAATAAATAA
4579391 TAT
1 TAT
4579394 ATTATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (17 bp):
TATTTTGTAATAAATAA
Found at i:4580308 original size:15 final size:16
Alignment explanation
Indices: 4580288--4580318 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4580278 TAATAATTTT
4580288 ATATTTT-TATAAAAA
1 ATATTTTCTATAAAAA
4580303 ATATTTTCTATAAAAA
1 ATATTTTCTATAAAAA
4580319 TTAGCTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTTTCTATAAAAA
Found at i:4583685 original size:21 final size:20
Alignment explanation
Indices: 4583660--4583705 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
4583650 ATATTATATA
4583660 ATTTTAAAATTAAAATTAATT
1 ATTTTAAAATTAAAATT-ATT
* * *
4583681 ATTTTAAATTTTAAATTTTT
1 ATTTTAAAATTAAAATTATT
4583701 ATTTT
1 ATTTT
4583706 TATTTAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTAAAATTAAAATTATT
Found at i:4584183 original size:15 final size:16
Alignment explanation
Indices: 4584163--4584192 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4584153 ATAATGCAAG
4584163 ACAAAAA-TAAATAAA
1 ACAAAAAGTAAATAAA
4584178 ACAAAAAGTAAATAA
1 ACAAAAAGTAAATAA
4584193 CTAAACCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (16 bp):
ACAAAAAGTAAATAAA
Found at i:4593291 original size:13 final size:13
Alignment explanation
Indices: 4593275--4593300 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4593265 CTTTGCATAT
4593275 TGTCTTCAACAGG
1 TGTCTTCAACAGG
4593288 TGTCTTCAACAGG
1 TGTCTTCAACAGG
4593301 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:4596973 original size:16 final size:16
Alignment explanation
Indices: 4596940--4596973 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4596930 CTTAACTGTT
* *
4596940 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
4596956 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
4596972 AA
1 AA
4596974 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:4599794 original size:21 final size:21
Alignment explanation
Indices: 4599768--4599808 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4599758 AGACGAGCAA
* *
4599768 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4599789 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4599809 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4601745 original size:16 final size:16
Alignment explanation
Indices: 4601712--4601745 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4601702 GGAGATTGTT
* *
4601712 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
4601728 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
4601744 AA
1 AA
4601746 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:4604889 original size:36 final size:36
Alignment explanation
Indices: 4604842--4604913 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
4604832 AAAAAGAGTA
*
4604842 AGAAAAGTGTACCTCTAACGTTAACTCTAGCTGATT
1 AGAAAAGTGTACCTCTAACGTTAACTCCAGCTGATT
4604878 AGAAAAGTGTACCTCTAACGTTAACTCCAGCTGATT
1 AGAAAAGTGTACCTCTAACGTTAACTCCAGCTGATT
4604914 GTTGGCTTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (36 bp):
AGAAAAGTGTACCTCTAACGTTAACTCCAGCTGATT
Found at i:4608501 original size:33 final size:33
Alignment explanation
Indices: 4608464--4608528 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
4608454 TATTTTTTAG
4608464 TATTTAAATAATTTTGCGTAAAA-TATTTTTCTT
1 TATTTAAATAATTTTGC-TAAAATTATTTTTCTT
* ** *
4608497 TATTTGAATTTTTTTTCTAAAATTATTTTTCT
1 TATTTAAATAATTTTGCTAAAATTATTTTTCT
4608529 AAATTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 5 0.19
33 22 0.81
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (33 bp):
TATTTAAATAATTTTGCTAAAATTATTTTTCTT
Found at i:4611072 original size:3 final size:3
Alignment explanation
Indices: 4611064--4611089 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4611054 TCCCATCCCT
4611064 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
4611090 TAATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:4612650 original size:3 final size:3
Alignment explanation
Indices: 4612642--4612673 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4612632 GTAGAAATTA
4612642 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
4612674 AACAGAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:4613664 original size:24 final size:23
Alignment explanation
Indices: 4613632--4613679 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
4613622 CAGTACAAAT
*
4613632 AACAAAAACAATAGCAAAAATAAC
1 AACAAAAACAACAG-AAAAATAAC
4613656 AACAAAAACAACAGAAAAATAAC
1 AACAAAAACAACAGAAAAATAAC
4613679 A
1 A
4613680 GCACCAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.73, C:0.17, G:0.04, T:0.06
Consensus pattern (23 bp):
AACAAAAACAACAGAAAAATAAC
Found at i:4614326 original size:11 final size:11
Alignment explanation
Indices: 4614306--4614349 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
4614296 CTCAACACCA
4614306 AAATTGAGAGG
1 AAATTGAGAGG
*
4614317 AAATTTAGAGG
1 AAATTGAGAGG
*
4614328 AAATTGAGAAG
1 AAATTGAGAGG
4614339 AAATTTGAGAG
1 AAA-TTGAGAG
4614350 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 22 0.79
12 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (11 bp):
AAATTGAGAGG
Found at i:4614334 original size:22 final size:23
Alignment explanation
Indices: 4614306--4614349 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4614296 CTCAACACCA
*
4614306 AAATTGAGAGGAAATTT-AGAGG
1 AAATTGAGAAGAAATTTGAGAGG
4614328 AAATTGAGAAGAAATTTGAGAG
1 AAATTGAGAAGAAATTTGAGAG
4614350 AGGATTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (23 bp):
AAATTGAGAAGAAATTTGAGAGG
Found at i:4631422 original size:103 final size:104
Alignment explanation
Indices: 4631243--4631507 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
4631233 AACCGTTATT
* * * * *
4631243 GGTGGATCTCGCACTTAGCACCGCCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
4631308 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
4631346 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
4631410 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
4631450 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
4631508 TTATGTACAA
Statistics
Matches: 148, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 1 0.01
103 81 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:4631869 original size:30 final size:29
Alignment explanation
Indices: 4631835--4631899 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
4631825 TAATCCACCA
4631835 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
4631865 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
4631895 CCCAA
1 CCCAA
4631900 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:4631873 original size:31 final size:30
Alignment explanation
Indices: 4631842--4631899 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
4631832 CCACCCAACT
4631842 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
4631872 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
4631900 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:4636479 original size:62 final size:64
Alignment explanation
Indices: 4636377--4636504 Score: 215
Period size: 62 Copynumber: 2.0 Consensus size: 64
4636367 CTTCTGATCA
* *
4636377 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAG-AAC-AAGTGATAAGTG
1 GTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTAACAAAGTGATAAGTG
*
4636439 GTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTAACAAAGTGATAAGTG
4636503 GT
1 GT
4636505 AGCATTAGCT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 45 0.74
63 2 0.03
64 14 0.23
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (64 bp):
GTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTAACAAAGTGATAAGTG
Found at i:4636504 original size:46 final size:46
Alignment explanation
Indices: 4636439--4637235 Score: 1348
Period size: 46 Copynumber: 17.4 Consensus size: 46
4636429 GTGATAAGTG
*
4636439 GTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
4636485 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* * *
4636531 GTGAGAAAGTGATAAGTGGTTGCCTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
4636577 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTAATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
4636623 GTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
4636669 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
4636715 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
4636761 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
4636807 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
4636853 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* * *
4636899 GAGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
4636945 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* * *
4636991 GAGATAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
4637037 GAGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
4637083 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
**
4637129 GTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAA
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
4637175 GTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATC-A
1 GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
4637219 GGGAC-AATTGATAAGTG
1 GTGACAAAGTGATAAGTG
4637236 ATCATAAGTA
Statistics
Matches: 720, Mismatches: 31, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
43 11 0.02
44 5 0.01
45 19 0.03
46 685 0.95
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
GTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
Done.