Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 186 of 211
Found at i:55119481 original size:49 final size:49
Alignment explanation
Indices: 55119376--55119481 Score: 121
Period size: 49 Copynumber: 2.1 Consensus size: 49
55119366 TTTAATTTAA
55119376 ATATTTTAAATAAGCTTTACTAAATTTATAATATTTATAAGTTTTTTTT
1 ATATTTTAAATAAGCTTTACTAAATTTATAATATTTATAAGTTTTTTTT
**
55119425 ATAATTTT-AATAAG-TTTA-TATCAATTT-TAATATTTAATATTTTTATTTTT
1 AT-ATTTTAAATAAGCTTTACTA--AATTTATAATATTT-ATAAGTTT-TTTTT
55119475 ATATTTT
1 ATATTTT
55119482 TTTTATGATT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
47 2 0.04
48 12 0.24
49 24 0.48
50 12 0.24
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (49 bp):
ATATTTTAAATAAGCTTTACTAAATTTATAATATTTATAAGTTTTTTTT
Found at i:55121478 original size:16 final size:18
Alignment explanation
Indices: 55121452--55121484 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
55121442 CTTAAAAATT
55121452 ATATAATTAAT-TTTTTA
1 ATATAATTAATATTTTTA
55121469 ATAT-ATTAATATTTTT
1 ATATAATTAATATTTTT
55121485 TAAAAAATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATAATTAATATTTTTA
Found at i:55129421 original size:19 final size:20
Alignment explanation
Indices: 55129397--55129441 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
55129387 TTTAAACAGT
* *
55129397 AAAAATTTTATAAAAA-ATA
1 AAAAATTATAGAAAAATATA
55129416 AAAAATTATAGAAAAATTATA
1 AAAAATTATAGAAAAA-TATA
55129437 AAAAA
1 AAAAA
55129442 AATTTAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAATTATAGAAAAATATA
Found at i:55129455 original size:21 final size:23
Alignment explanation
Indices: 55129415--55129457 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
55129405 TATAAAAAAT
55129415 AAAAAATTATAGAAAAATTATAA
1 AAAAAATTATAGAAAAATTATAA
*
55129438 AAAAAATT-TA-AAACATTATA
1 AAAAAATTATAGAAAAATTATA
55129458 TATCTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 2 0.11
23 8 0.42
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
AAAAAATTATAGAAAAATTATAA
Found at i:55131183 original size:16 final size:17
Alignment explanation
Indices: 55131162--55131197 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
55131152 TCAACTCCTA
55131162 TTTTAATTTCG-ATTAT
1 TTTTAATTTCGAATTAT
*
55131178 TTTTAATTTTGAATTAT
1 TTTTAATTTCGAATTAT
55131195 TTT
1 TTT
55131198 CATCCTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTAATTTCGAATTAT
Found at i:55132329 original size:98 final size:98
Alignment explanation
Indices: 55132160--55132356 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
55132150 TCTAATTACC
55132160 TAAGTAGATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
1 TAAGTAGATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
*
55132225 TGTAATATTTAGATTTTCCCTGATTTTTTGTTT
66 TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
55132258 TAAGTAGATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
1 TAAGTAGATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
*
55132323 TGTAATATTTGGATTTTCCCTGATTTTTGGTTT
66 TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
55132356 T
1 T
55132357 TATAAAATAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (98 bp):
TAAGTAGATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
Found at i:55132660 original size:55 final size:55
Alignment explanation
Indices: 55132571--55132684 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 55
55132561 TATCATTGAC
* *
55132571 CATTGGTCAACTAACTGCCACATCTAATTCTGATTTATTTGATAAAGATTAAAAG
1 CATTAGTCAACTAACTGCCACATCTAATCCTGATTTATTTGATAAAGATTAAAAG
*
55132626 CATTAGTCAACTAGCTGCCACATCTAATCCTGATTTATTTGATAAAGATTAAAAG
1 CATTAGTCAACTAACTGCCACATCTAATCCTGATTTATTTGATAAAGATTAAAAG
55132681 -ATTA
1 CATTA
55132685 AGGTGGCAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 4 0.07
55 52 0.93
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (55 bp):
CATTAGTCAACTAACTGCCACATCTAATCCTGATTTATTTGATAAAGATTAAAAG
Found at i:55138313 original size:8 final size:8
Alignment explanation
Indices: 55138300--55138324 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
55138290 GACTATAAGG
55138300 AAATATTC
1 AAATATTC
55138308 AAATATTC
1 AAATATTC
55138316 AAATATTC
1 AAATATTC
55138324 A
1 A
55138325 GATCTTGGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATATTC
Found at i:55147435 original size:24 final size:25
Alignment explanation
Indices: 55147403--55147457 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
55147393 ATAATAAAAA
*
55147403 TATAATTTTATTA-TTTTAATAGTT
1 TATAATTTTATAATTTTTAATAGTT
* *
55147427 TATATTTTTATAATTTTTAATAGAT
1 TATAATTTTATAATTTTTAATAGTT
55147452 TA-AATT
1 TATAATT
55147458 AATTTTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (25 bp):
TATAATTTTATAATTTTTAATAGTT
Found at i:55148170 original size:29 final size:28
Alignment explanation
Indices: 55148119--55148175 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
55148109 TTAAAAAAGT
*
55148119 TTTAATGTGGTACCTCTACTTTTAATTTA
1 TTTAATGTGGTACCTCAACTTTT-ATTTA
*
55148148 TTTAATGTGGTACCT-AAGTTTTTATTTA
1 TTTAATGTGGTACCTCAA-CTTTTATTTA
55148176 GCCTATCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.53
Consensus pattern (28 bp):
TTTAATGTGGTACCTCAACTTTTATTTA
Found at i:55154889 original size:20 final size:20
Alignment explanation
Indices: 55154855--55154896 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
55154845 AACTATCTAA
** *
55154855 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
55154875 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
55154895 AT
1 AT
55154897 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:55156907 original size:13 final size:14
Alignment explanation
Indices: 55156889--55156925 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
55156879 AATGGCATAT
55156889 AAATAATATAAAC-
1 AAATAATATAAACG
55156902 AAATAA-ATAAACG
1 AAATAATATAAACG
55156915 AAATTAATATA
1 AAA-TAATATA
55156926 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (14 bp):
AAATAATATAAACG
Found at i:55157466 original size:6 final size:6
Alignment explanation
Indices: 55157457--55157496 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
55157447 GCGCATGAAT
* * *
55157457 ATAAAA ATAAAA ATAAAA ATATAA ATATAA ATAATA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA
55157497 TAATGATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (6 bp):
ATAAAA
Found at i:55157976 original size:22 final size:21
Alignment explanation
Indices: 55157941--55158036 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 21
55157931 AAAAGGTATC
* *
55157941 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
55157962 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
55157985 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
55158004 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
55158023 TGCATATCATATCT
1 TACAAATCATATCT
55158037 AAGATTGCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
19 34 0.54
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:55157984 original size:23 final size:22
Alignment explanation
Indices: 55157941--55157998 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
55157931 AAAAGGTATC
* *
55157941 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
55157962 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
55157985 TGCATATCATATCT
1 TACAAATCATATCT
55157999 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:55158001 original size:19 final size:19
Alignment explanation
Indices: 55157977--55158049 Score: 128
Period size: 19 Copynumber: 3.8 Consensus size: 19
55157967 AATCATATCT
55157977 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
55157996 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
55158015 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
55158034 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
55158050 CTTGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:55161948 original size:144 final size:144
Alignment explanation
Indices: 55161723--55162006 Score: 505
Period size: 144 Copynumber: 2.0 Consensus size: 144
55161713 TAAGGTAGAT
**
55161723 TAGTAATAATGTGTAACCCTATATAGTATATACAACTATGTTACTATAATGTACATTTGTATATT
1 TAGTAATAATGTGTAACCCTATATAGTATATACAACTATGCCACTATAATGTACATTTGTATATT
* *
55161788 AATGATACGTAACCTTAAACCCTAAATGTGCAACTAACCTTATCGTATATTATTGTTATACTTAT
66 AATGATACGCAACCTTAAACCCTAAATGTGCAACTAACCTTATCATATATTATTGTTATACTTAT
*
55161853 ATCCTTACCTTATA
131 ACCCTTACCTTATA
55161867 TAGTAATAATGTGTAACCCTATATAGTATATACAACTATGCCACTATAATGTACATTTGTATATT
1 TAGTAATAATGTGTAACCCTATATAGTATATACAACTATGCCACTATAATGTACATTTGTATATT
* *
55161932 AATGATACGCAACCTTAAACTCTAAATGTGCAGCTAACCTTATCATATATTATTGTTATACTTAT
66 AATGATACGCAACCTTAAACCCTAAATGTGCAACTAACCTTATCATATATTATTGTTATACTTAT
55161997 ACCCTTACCT
131 ACCCTTACCT
55162007 CAATTTAGAC
Statistics
Matches: 133, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 133 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.38
Consensus pattern (144 bp):
TAGTAATAATGTGTAACCCTATATAGTATATACAACTATGCCACTATAATGTACATTTGTATATT
AATGATACGCAACCTTAAACCCTAAATGTGCAACTAACCTTATCATATATTATTGTTATACTTAT
ACCCTTACCTTATA
Found at i:55168303 original size:19 final size:21
Alignment explanation
Indices: 55168269--55168309 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
55168259 ATAAAACGGG
*
55168269 AAATTTTTGAATTTG-TAGCA
1 AAATGTTTGAATTTGTTAGCA
55168289 AAATGTTTG-ATTTGTTAGCA
1 AAATGTTTGAATTTGTTAGCA
55168309 A
1 A
55168310 GTGAAAGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (21 bp):
AAATGTTTGAATTTGTTAGCA
Found at i:55170327 original size:42 final size:42
Alignment explanation
Indices: 55170267--55170392 Score: 146
Period size: 42 Copynumber: 3.0 Consensus size: 42
55170257 GTTTACTTTT
* * *
55170267 CGTTCAGCTCTCGCGAGCTTCTGTTTAACTCATATGAGTTTC
1 CGTTCAGCTCTAGCGAGCTTCTATTTAACCCATATGAGTTTC
** *
55170309 CGTTCAGCTCTATTGAGCTTCTATTTAACCCTTATGAGTTTC
1 CGTTCAGCTCTAGCGAGCTTCTATTTAACCCATATGAGTTTC
* * * *
55170351 CGTTCAGCTCTTA-CGAGCTTCCATTCAACCCTTATGGGTTTC
1 CGTTCAGCTC-TAGCGAGCTTCTATTTAACCCATATGAGTTTC
55170393 TATTTAACTC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 71 0.97
43 2 0.03
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (42 bp):
CGTTCAGCTCTAGCGAGCTTCTATTTAACCCATATGAGTTTC
Found at i:55170404 original size:42 final size:42
Alignment explanation
Indices: 55170299--55170413 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
55170289 GTTTAACTCA
* * * * *
55170299 TATGAGTTTCCGTTCAGCTC-TATTGAGCTTCTATTTAACCCT
1 TATGAGTTTCCATTCAACTCTTA-CGAGCTTCCATTCAACCCT
* *
55170341 TATGAGTTTCCGTTCAGCTCTTACGAGCTTCCATTCAACCCT
1 TATGAGTTTCCATTCAACTCTTACGAGCTTCCATTCAACCCT
* * * *
55170383 TATGGGTTTCTATTTAACTCTTATGAGCTTC
1 TATGAGTTTCCATTCAACTCTTACGAGCTTC
55170414 TGTTCAGCCT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 61 0.97
43 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (42 bp):
TATGAGTTTCCATTCAACTCTTACGAGCTTCCATTCAACCCT
Found at i:55170414 original size:21 final size:21
Alignment explanation
Indices: 55170281--55170435 Score: 82
Period size: 21 Copynumber: 7.5 Consensus size: 21
55170271 CAGCTCTCGC
* * *
55170281 GAGCTTCTGTTTAACTCATAT
1 GAGCTTCTATTCAACTCTTAT
* ** *
55170302 GAGTTTCCGTTCAGCTC-TATT
1 GAGCTTCTATTCAACTCTTA-T
* *
55170323 GAGCTTCTATTTAACCCTTAT
1 GAGCTTCTATTCAACTCTTAT
* ** * *
55170344 GAGTTTCCGTTCAGCTCTTAC
1 GAGCTTCTATTCAACTCTTAT
* *
55170365 GAGCTTCCATTCAACCCTTAT
1 GAGCTTCTATTCAACTCTTAT
* * *
55170386 GGGTTTCTATTTAACTCTTAT
1 GAGCTTCTATTCAACTCTTAT
* *
55170407 GAGCTTCTGTTCAGC-CTTA-
1 GAGCTTCTATTCAACTCTTAT
*
55170426 GGGCTTCTAT
1 GAGCTTCTAT
55170436 AAACGATGTG
Statistics
Matches: 98, Mismatches: 34, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
19 8 0.08
20 6 0.06
21 82 0.84
22 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.41
Consensus pattern (21 bp):
GAGCTTCTATTCAACTCTTAT
Found at i:55174274 original size:3 final size:3
Alignment explanation
Indices: 55174261--55174318 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
55174251 ATTACTTAAC
* * * * * * *
55174261 TAT TTT TAT TAT TAT TGT TAT TAT TAT TAA TGT TAC TAT AAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
55174309 TAT TAT TAT T
1 TAT TAT TAT T
55174319 TGTATTAGTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:55180150 original size:20 final size:19
Alignment explanation
Indices: 55180116--55180156 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 19
55180106 ATTATTTGAA
55180116 TTTTATATTTTATAA-TTT
1 TTTTATATTTTATAACTTT
55180134 TTTTATGATTCTTATAACTTT
1 TTTTAT-ATT-TTATAACTTT
55180155 TT
1 TT
55180157 AATAATCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 6 0.30
21 5 0.25
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTATATTTTATAACTTT
Found at i:55180157 original size:19 final size:18
Alignment explanation
Indices: 55180116--55180157 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
55180106 ATTATTTGAA
*
55180116 TTTTATATTTTATAATTT
1 TTTTATATTTTATAATCT
55180134 TTTTATGATTCTTATAA-CT
1 TTTTAT-ATT-TTATAATCT
55180153 TTTTA
1 TTTTA
55180158 ATAATCAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 9 0.43
20 6 0.29
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATATTTTATAATCT
Found at i:55180246 original size:19 final size:20
Alignment explanation
Indices: 55180224--55180272 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
55180214 TTTATTGGAA
55180224 TTTTTAATAAT-TCTATA-AT
1 TTTTTAATAATAT-TATATAT
* *
55180243 TTTTTAAAAATATTTTATAT
1 TTTTTAATAATATTATATAT
55180263 TTTTTAATAA
1 TTTTTAATAA
55180273 CAACTTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTAATAATATTATATAT
Found at i:55188219 original size:25 final size:23
Alignment explanation
Indices: 55188184--55188235 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
55188174 TTTGGTTGTT
*
55188184 TTTTTCTTTAATTTTTGTAAATATAA
1 TTTTTCTTTAA-CTTT-TAAATAT-A
55188210 TTTTTC-TTAACTTTTAAATATA
1 TTTTTCTTTAACTTTTAAATATA
55188232 TTTT
1 TTTT
55188236 GAATTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 5 0.20
23 7 0.28
24 3 0.12
25 4 0.16
26 6 0.24
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTTCTTTAACTTTTAAATATA
Found at i:55199900 original size:11 final size:11
Alignment explanation
Indices: 55199880--55199925 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
55199870 ACATCTCAAC
55199880 AAAT-TATAAA
1 AAATATATAAA
*
55199890 GAATATATAAA
1 AAATATATAAA
*
55199901 AAAAACT-TAAA
1 AAATA-TATAAA
55199912 AAATATATAAA
1 AAATATATAAA
55199923 AAA
1 AAA
55199926 AACTCTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
10 4 0.14
11 24 0.83
12 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (11 bp):
AAATATATAAA
Found at i:55199916 original size:22 final size:23
Alignment explanation
Indices: 55199886--55199934 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
55199876 CAACAAATTA
*
55199886 TAAAGAATATATAAAAAAAACT-
1 TAAAAAATATATAAAAAAAACTC
55199908 TAAAAAATATATAAAAAAAACTC
1 TAAAAAATATATAAAAAAAACTC
55199931 TAAA
1 TAAA
55199935 CTTTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (23 bp):
TAAAAAATATATAAAAAAAACTC
Found at i:55199978 original size:36 final size:36
Alignment explanation
Indices: 55199907--55199978 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
55199897 TAAAAAAAAC
* **
55199907 TTAAAAAATATATAAAAAAAACTCTAAACTTTAAAT
1 TTAAAAAATATATAAAAAAAACTCAAAACCCTAAAT
**
55199943 TTAAAAAATATA-AAAAAACCCTACAAAACCCTAAAT
1 TTAAAAAATATATAAAAAAAACT-CAAAACCCTAAAT
55199979 CCTAAAATCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 8 0.27
36 22 0.73
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (36 bp):
TTAAAAAATATATAAAAAAAACTCAAAACCCTAAAT
Found at i:55201866 original size:35 final size:37
Alignment explanation
Indices: 55201823--55201892 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 37
55201813 GTAAATGTTG
*
55201823 AAAAAAATTAT-ATA-TATAAAG-ATAATATAAAAAC
1 AAAAAAATTATGAGATTATAAAGTATAATATAAAAAC
*
55201857 AAAACAAATTATGAGATTATAGAGTATAATATAAAA
1 AAAA-AAATTATGAGATTATAAAGTATAATATAAAA
55201893 GAAAATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 4 0.13
35 7 0.23
36 2 0.07
37 6 0.20
38 11 0.37
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (37 bp):
AAAAAAATTATGAGATTATAAAGTATAATATAAAAAC
Found at i:55210078 original size:23 final size:23
Alignment explanation
Indices: 55210033--55210078 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
55210023 AATGCAACAA
* *
55210033 GAGACCAGCAACAGTTCAGCATG
1 GAGACCAGCAACAGCTCAACATG
*
55210056 GAGACCAGCAGCAGCTCAACATG
1 GAGACCAGCAACAGCTCAACATG
55210079 AAGATCGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.11
Consensus pattern (23 bp):
GAGACCAGCAACAGCTCAACATG
Found at i:55214583 original size:23 final size:23
Alignment explanation
Indices: 55214538--55214583 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
55214528 AATGCAACAA
* *
55214538 GAGACCAGCAGCAATTCAGCATG
1 GAGACCAGCAGCAACTCAACATG
*
55214561 GAGACCAGCAGCAGCTCAACATG
1 GAGACCAGCAGCAACTCAACATG
55214584 AAGATTGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.11
Consensus pattern (23 bp):
GAGACCAGCAGCAACTCAACATG
Found at i:55217264 original size:41 final size:41
Alignment explanation
Indices: 55217206--55217355 Score: 246
Period size: 41 Copynumber: 3.6 Consensus size: 41
55217196 CTTAATTTAA
*
55217206 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
55217248 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
* *
55217289 CAGATCACCGGCACTTAGCTTGCTAGGTTTATAACATGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
* *
55217330 CAGATCACCAGCACTTAGCCTTCTAG
1 CAGATCACCGGCACTTAGCCTGCTAG
55217356 ACGTATAGTC
Statistics
Matches: 102, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
41 98 0.96
42 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
Found at i:55219915 original size:7 final size:7
Alignment explanation
Indices: 55219903--55219936 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
55219893 TTTATAGTTG
55219903 ATTTCAC
1 ATTTCAC
55219910 ATTTCAC
1 ATTTCAC
55219917 ATTTCAC
1 ATTTCAC
55219924 ATTTCAC
1 ATTTCAC
55219931 ATTTCA
1 ATTTCA
55219937 TTGACTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTTCAC
Found at i:55220873 original size:19 final size:20
Alignment explanation
Indices: 55220840--55220893 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
55220830 AAAAAATATA
55220840 AATTTTAATATTTTT-ATAAAT
1 AATTTTAA-ATTTTTGA-AAAT
55220861 -ATTTTAAATTTTTGAAAAT
1 AATTTTAAATTTTTGAAAAT
*
55220880 AATTTTGAATTTTT
1 AATTTTAAATTTTT
55220894 TTTTATAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 10 0.33
20 20 0.67
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (20 bp):
AATTTTAAATTTTTGAAAAT
Found at i:55238391 original size:24 final size:24
Alignment explanation
Indices: 55238354--55238413 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
55238344 CCAAACACTC
*
55238354 ACACTCAGTTCTCTG-CGCAGCCAA
1 ACACTCAGTCCTCTGTC-CAGCCAA
*
55238378 ACACTCAATCCTCTGTCCAGCCAA
1 ACACTCAGTCCTCTGTCCAGCCAA
55238402 ACACTCAGTCCT
1 ACACTCAGTCCT
55238414 TGCCTACCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.27, C:0.40, G:0.12, T:0.22
Consensus pattern (24 bp):
ACACTCAGTCCTCTGTCCAGCCAA
Found at i:55245236 original size:3 final size:3
Alignment explanation
Indices: 55245228--55245253 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
55245218 TAAGGAACAT
55245228 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
55245254 AACAGTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:55253422 original size:29 final size:30
Alignment explanation
Indices: 55253355--55253435 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 30
55253345 CTCAAATTAA
* *
55253355 TTATATATGAACTTTAATTTAATATGAAATT
1 TTATACATGAACTTTGATTT-ATATGAAATT
* * *
55253386 TTAGACATGAACTTTGATTT-TGTGCAATT
1 TTATACATGAACTTTGATTTATATGAAATT
*
55253415 TTATACATGAAATTTTGATTT
1 TTATACATG-AACTTTGATTT
55253436 GATCCAATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 15 0.36
30 10 0.24
31 17 0.40
ACGTcount: A:0.35, C:0.06, G:0.11, T:0.48
Consensus pattern (30 bp):
TTATACATGAACTTTGATTTATATGAAATT
Found at i:55253444 original size:30 final size:29
Alignment explanation
Indices: 55253382--55253444 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
55253372 TTTAATATGA
*
55253382 AATTTTAGACATGAACTTTGATTTTGTGC
1 AATTTTAGACATGAACTTTGATTTTGTCC
* *
55253411 AATTTTATACATGAAATTTTGA-TTTGATCC
1 AATTTTAGACATG-AACTTTGATTTTG-TCC
55253441 AATT
1 AATT
55253445 ATTACAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (29 bp):
AATTTTAGACATGAACTTTGATTTTGTCC
Found at i:55259286 original size:17 final size:17
Alignment explanation
Indices: 55259264--55259330 Score: 116
Period size: 17 Copynumber: 3.9 Consensus size: 17
55259254 TCCCAGATTT
55259264 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
**
55259281 TGATACTTATATCTTTC
1 TGATACCCATATCTTTC
55259298 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
55259315 TGATACCCATATCTTT
1 TGATACCCATATCTTT
55259331 GACTTTCAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.24, C:0.25, G:0.06, T:0.45
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:55261894 original size:19 final size:19
Alignment explanation
Indices: 55261868--55261943 Score: 73
Period size: 19 Copynumber: 3.9 Consensus size: 19
55261858 CATCACTATC
55261868 ACACAAAGTGTATCTTGGT
1 ACACAAAGTGTATCTTGGT
* *
55261887 ATACAAAGCTGCATCTTAGG-
1 ACACAAAG-TGTATCTT-GGT
* **
55261907 GCACAAAGCATATCTTGGT
1 ACACAAAGTGTATCTTGGT
*
55261926 ACACCAAGTGTATCTTGG
1 ACACAAAGTGTATCTTGG
55261944 CATATAAGGT
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
18 2 0.05
19 26 0.60
20 13 0.30
21 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (19 bp):
ACACAAAGTGTATCTTGGT
Found at i:55262289 original size:18 final size:18
Alignment explanation
Indices: 55262266--55262302 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
55262256 AATGGTAGTC
55262266 CATGTCTCGATAATTGAT
1 CATGTCTCGATAATTGAT
55262284 CATGTCTCGATAATTGAT
1 CATGTCTCGATAATTGAT
55262302 C
1 C
55262303 TCAACTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (18 bp):
CATGTCTCGATAATTGAT
Found at i:55267664 original size:18 final size:17
Alignment explanation
Indices: 55267631--55267669 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
55267621 TTTTATAAAT
55267631 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
55267649 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
55267666 TGTG
1 TGTG
55267670 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:55267924 original size:23 final size:23
Alignment explanation
Indices: 55267896--55268016 Score: 190
Period size: 23 Copynumber: 5.3 Consensus size: 23
55267886 GTGTTATTGA
55267896 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
55267919 TTAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
55267942 TCTGTGGTAGCTTCGGCTAC-TT
1 TCAGTGGTAGCTTCGGCTACATT
55267964 ATCAGTGGTAGCTTCGGCTACATT
1 -TCAGTGGTAGCTTCGGCTACATT
* *
55267988 TCAGTGGTAGCTTCGGGTACATA
1 TCAGTGGTAGCTTCGGCTACATT
55268011 TCAGTG
1 TCAGTG
55268017 TGGCACTTAT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
22 2 0.02
23 86 0.96
24 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:55271704 original size:16 final size:18
Alignment explanation
Indices: 55271669--55271706 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
55271659 ATCCTTATTT
*
55271669 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
55271687 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
55271703 AAAT
1 AAAT
55271707 CCCTATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:55278556 original size:27 final size:27
Alignment explanation
Indices: 55278525--55278584 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
55278515 TCCGAAAAGC
*
55278525 CACTATCACTGAA-TTGCACTGAAGTGT
1 CACTATCACT-AAGTTGCACTAAAGTGT
*
55278552 TACTATCACTAAGTTGCACTAAAGTGT
1 CACTATCACTAAGTTGCACTAAAGTGT
55278579 CACTAT
1 CACTAT
55278585 TATTATGCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (27 bp):
CACTATCACTAAGTTGCACTAAAGTGT
Found at i:55281460 original size:4 final size:4
Alignment explanation
Indices: 55281451--55281532 Score: 50
Period size: 4 Copynumber: 20.8 Consensus size: 4
55281441 ATTAATATCC
55281451 AAAT AAAT -AAT AAAT -AAT AAAAT AAA- ATAAT AAAGT -AAT AAAT AAAGT
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT AAA-T AAAT AAAT AAA-T
* * *
55281499 AAAG AAAG AAA- AAAT -AAT AAAT AATAA AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAA
55281533 AATTGGGTTG
Statistics
Matches: 64, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
3 14 0.22
4 38 0.59
5 12 0.19
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:55281464 original size:7 final size:7
Alignment explanation
Indices: 55281452--55281532 Score: 66
Period size: 7 Copynumber: 11.9 Consensus size: 7
55281442 TTAATATCCA
55281452 AATAAAT
1 AATAAAT
55281459 AATAAAT
1 AATAAAT
55281466 AAT-AA-
1 AATAAAT
55281471 AATAAAAT
1 AAT-AAAT
55281479 AATAAAGT
1 AATAAA-T
55281487 AATAAAT
1 AATAAAT
*
55281494 AAAGTAAAG
1 -AA-TAAAT
*
55281503 AA-AGA-
1 AATAAAT
55281508 AA-AAAT
1 AATAAAT
55281514 AATAAAT
1 AATAAAT
55281521 AATAAA-
1 AATAAAT
55281527 AATAAA
1 AATAAA
55281533 AATTGGGTTG
Statistics
Matches: 63, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
5 7 0.11
6 12 0.19
7 26 0.41
8 14 0.22
9 4 0.06
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (7 bp):
AATAAAT
Found at i:55284620 original size:9 final size:8
Alignment explanation
Indices: 55284601--55284625 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
55284591 TACATTCCTG
55284601 AAAAAATA
1 AAAAAATA
55284609 AAAAAATA
1 AAAAAATA
55284617 AAAAAATA
1 AAAAAATA
55284625 A
1 A
55284626 TAGAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:55285497 original size:15 final size:14
Alignment explanation
Indices: 55285476--55285511 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
55285466 ATAATCCTTA
55285476 ATAATTATCTCAAT
1 ATAATTATCTCAAT
*
55285490 ATTAATTATCTTAAT
1 A-TAATTATCTCAAT
55285505 ATAATTA
1 ATAATTA
55285512 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCTCAAT
Found at i:55287186 original size:31 final size:31
Alignment explanation
Indices: 55287150--55287213 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
55287140 TTTTATCCCA
55287150 ACACTTTTCACTTTCTTACAATTTAGTCAAT
1 ACACTTTTCACTTTCTTACAATTTAGTCAAT
55287181 ACACTTTTCACTTTCTTACAATTTAGTCAAT
1 ACACTTTTCACTTTCTTACAATTTAGTCAAT
55287212 AC
1 AC
55287214 CTCATATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.44
Consensus pattern (31 bp):
ACACTTTTCACTTTCTTACAATTTAGTCAAT
Found at i:55288968 original size:12 final size:12
Alignment explanation
Indices: 55288953--55289013 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
55288943 GGTTATTTCA
55288953 ATTTCAATTTTG
1 ATTTCAATTTTG
* * *
55288965 ATTTCGATTCTA
1 ATTTCAATTTTG
** * *
55288977 ATTTTGACTTCG
1 ATTTCAATTTTG
55288989 ATTTCAATTTTG
1 ATTTCAATTTTG
55289001 ATTTCAATTTTG
1 ATTTCAATTTTG
55289013 A
1 A
55289014 AACACTCACT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.25, C:0.11, G:0.10, T:0.54
Consensus pattern (12 bp):
ATTTCAATTTTG
Found at i:55288979 original size:18 final size:18
Alignment explanation
Indices: 55288947--55289010 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
55288937 ATTTAGGGTT
*
55288947 ATTTCAATTTCAATTTTG
1 ATTTCGATTTCAATTTTG
55288965 ATTTCGA-TTCTAATTTTG
1 ATTTCGATTTC-AATTTTG
*
55288983 ACTTCGATTTCAATTTTG
1 ATTTCGATTTCAATTTTG
*
55289001 ATTTCAATTT
1 ATTTCGATTT
55289011 TGAAACACTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
17 3 0.08
18 34 0.85
19 3 0.08
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (18 bp):
ATTTCGATTTCAATTTTG
Found at i:55289046 original size:6 final size:6
Alignment explanation
Indices: 55289029--55289096 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
55289019 TCACTCATTC
* ** * * * * *
55289029 TGATTT TAATTT TGATTT CAATTT CGATCT CGATTT AGATTT AGATTT
1 TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT
*
55289077 TGATTT TGATTT GGATTT TG
1 TGATTT TGATTT TGATTT TG
55289097 GTTTGGTTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (6 bp):
TGATTT
Found at i:55289096 original size:12 final size:12
Alignment explanation
Indices: 55289060--55289102 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
55289050 TTTCGATCTC
* *
55289060 GATTTAGATTTA
1 GATTTGGATTTT
*
55289072 GATTTTGATTTT
1 GATTTGGATTTT
55289084 GATTTGGATTTT
1 GATTTGGATTTT
*
55289096 GGTTTGG
1 GATTTGG
55289103 TTATTAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.56
Consensus pattern (12 bp):
GATTTGGATTTT
Found at i:55289423 original size:61 final size:61
Alignment explanation
Indices: 55289307--55289423 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 61
55289297 TTGTCTGTTA
* * **
55289307 TTGTCTGCCATGTGCAAGACAAAAATGGTTGTGTTTGTATTAAATTATTTTGTATTGGTTG
1 TTGTCTACCATGTGCAAGACAAAAATGGTTGGGTTTGTATTAAATTATTGGGTATTGGTTG
* *
55289368 TTGTCTACCATGTGCATGACAGAAATGGTTGGGTTTGTATTAAATTATTGGGTATT
1 TTGTCTACCATGTGCAAGACAAAAATGGTTGGGTTTGTATTAAATTATTGGGTATT
55289424 TTGTAGTAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.43
Consensus pattern (61 bp):
TTGTCTACCATGTGCAAGACAAAAATGGTTGGGTTTGTATTAAATTATTGGGTATTGGTTG
Found at i:55291358 original size:28 final size:28
Alignment explanation
Indices: 55291302--55291369 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
55291292 GTTGGTGTGT
*
55291302 TGACTA-TTTTTT-TAATATGCATGCGG
1 TGACTATTTTTTTATAATATGCATGCAG
* *
55291328 TGAGTATTTTTTTATAATATGCATGTAG
1 TGACTATTTTTTTATAATATGCATGCAG
*
55291356 TGACTGTTTTTTTA
1 TGACTATTTTTTTA
55291370 GGTGTATGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.14
27 6 0.17
28 24 0.69
ACGTcount: A:0.24, C:0.07, G:0.18, T:0.51
Consensus pattern (28 bp):
TGACTATTTTTTTATAATATGCATGCAG
Found at i:55292796 original size:20 final size:20
Alignment explanation
Indices: 55292771--55292833 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
55292761 ATCAGCCATG
55292771 TATACCAACATAAGCAACAA
1 TATACCAACATAAGCAACAA
* * **
55292791 TATACCAGC--AATC-A-TG
1 TATACCAACATAAGCAACAA
55292807 TATACCAACATAAGCAACAA
1 TATACCAACATAAGCAACAA
55292827 TATACCA
1 TATACCA
55292834 GCAACAATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
16 8 0.26
17 1 0.03
18 6 0.19
19 1 0.03
20 15 0.48
ACGTcount: A:0.49, C:0.25, G:0.06, T:0.19
Consensus pattern (20 bp):
TATACCAACATAAGCAACAA
Found at i:55292807 original size:36 final size:36
Alignment explanation
Indices: 55292767--55292837 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
55292757 TACAATCAGC
55292767 CATGTATACCAACATAAGCAACAATATACCAGCAAT
1 CATGTATACCAACATAAGCAACAATATACCAGCAAT
55292803 CATGTATACCAACATAAGCAACAATATACCAGCAA
1 CATGTATACCAACATAAGCAACAATATACCAGCAA
55292838 CAATATTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.48, C:0.25, G:0.08, T:0.18
Consensus pattern (36 bp):
CATGTATACCAACATAAGCAACAATATACCAGCAAT
Found at i:55296135 original size:42 final size:41
Alignment explanation
Indices: 55296076--55296161 Score: 145
Period size: 42 Copynumber: 2.1 Consensus size: 41
55296066 TTTAGGCAGT
*
55296076 GTTTCTCTGTTATCAATCGCTGCTGATAAATGTCATCATGGG
1 GTTTCTCTGTTATCAATCACTGCTGAT-AATGTCATCATGGG
*
55296118 GTTTCTCTGTTATCAATCACTGCTGATAATGTCATCATGTG
1 GTTTCTCTGTTATCAATCACTGCTGATAATGTCATCATGGG
55296159 GTT
1 GTT
55296162 ACTTCTGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 16 0.38
42 26 0.62
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.41
Consensus pattern (41 bp):
GTTTCTCTGTTATCAATCACTGCTGATAATGTCATCATGGG
Found at i:55299241 original size:108 final size:107
Alignment explanation
Indices: 55299112--55299353 Score: 269
Period size: 108 Copynumber: 2.3 Consensus size: 107
55299102 TGTTAGAAAC
* * * * *
55299112 AAATTAAAAAAATTAATATTATTTTAAAAATGAGTATAAC-AATTAACTA-GATAAATAGTTGTT
1 AAATTATAAAAA-TAAAATTATTTAAAAAATAAGTAT-ACGAATTAAC-AGGACAAATAGTTGTT
* ***
55299175 TAAGTTCATTTGAGA-TTGAAGACTTGTTTGTCTAGATTCATTTTG
63 TAAGTTCATTTGA-ATTTGAACACCCATTTGTCTAGATTCATTTTG
* *
55299220 AAATTATAAAAATCAAAATTATTTAAAAAATAAGTATACGGATTAACAGGACAAATGGTTGTTTA
1 AAATTATAAAAAT-AAAATTATTTAAAAAATAAGTATACGAATTAACAGGACAAATAGTTGTTTA
* *
55299285 AGTTCATTTGAATTTGGACACCCATTTGTCTATATTCATTTTG
65 AGTTCATTTGAATTTGAACACCCATTTGTCTAGATTCATTTTG
*
55299328 GAATTATAAATAA-AAAATTA-TTAAAA
1 AAATTATAAA-AATAAAATTATTTAAAA
55299354 TTATATGGTT
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
106 6 0.05
107 12 0.10
108 95 0.83
109 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (107 bp):
AAATTATAAAAATAAAATTATTTAAAAAATAAGTATACGAATTAACAGGACAAATAGTTGTTTAA
GTTCATTTGAATTTGAACACCCATTTGTCTAGATTCATTTTG
Found at i:55299848 original size:43 final size:43
Alignment explanation
Indices: 55299787--55299872 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
55299777 AATTTATGAA
55299787 AAAAAAAAATCTTCTTCCCACCCTCTGCTCACATAACTAAAAC
1 AAAAAAAAATCTTCTTCCCACCCTCTGCTCACATAACTAAAAC
55299830 AAAAAAAAATCTTCTTCCCACCCTCTGCTCACATAACTAAAAC
1 AAAAAAAAATCTTCTTCCCACCCTCTGCTCACATAACTAAAAC
55299873 TTTTCAGGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.33, G:0.02, T:0.23
Consensus pattern (43 bp):
AAAAAAAAATCTTCTTCCCACCCTCTGCTCACATAACTAAAAC
Found at i:55302476 original size:37 final size:38
Alignment explanation
Indices: 55302429--55302504 Score: 120
Period size: 37 Copynumber: 2.0 Consensus size: 38
55302419 ATAAACATTA
55302429 AAAAATATTTTAAAAATAAAAA-AATAAAAAATAT-TTT
1 AAAAATATTTTAAAAATAAAAATAA-AAAAAATATATTT
*
55302466 AAAAGTATTTTAAAAATAAAAATAAAAAAAATATATTT
1 AAAAATATTTTAAAAATAAAAATAAAAAAAATATATTT
55302504 A
1 A
55302505 TTATATTCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
37 30 0.83
38 6 0.17
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (38 bp):
AAAAATATTTTAAAAATAAAAATAAAAAAAATATATTT
Found at i:55316593 original size:27 final size:25
Alignment explanation
Indices: 55316492--55316615 Score: 96
Period size: 24 Copynumber: 5.0 Consensus size: 25
55316482 GTGAGCCATG
* *
55316492 TAAT-GGGAAGCTCATAAGAG-CTG
1 TAATCGGGAAGCTCAGAAGAGCCTT
* * **
55316515 TAATCGGGAAGTTCA-AGCGAGCCAA
1 TAATCGGGAAGCTCAGA-AGAGCCTT
* * *
55316540 T-ATCTGGAAGCTCCGAAGAGCCAT
1 TAATCGGGAAGCTCAGAAGAGCCTT
55316564 TAATTC-GGAAGCTCATGAAAGAGCCTT
1 TAA-TCGGGAAGCTCA-G-AAGAGCCTT
55316591 TAATCGGGAAGCTCAGAAGAGCCTT
1 TAATCGGGAAGCTCAGAAGAGCCTT
55316616 ATATCAGAAC
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
23 5 0.06
24 29 0.36
25 21 0.26
26 6 0.07
27 20 0.25
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
TAATCGGGAAGCTCAGAAGAGCCTT
Found at i:55316784 original size:24 final size:25
Alignment explanation
Indices: 55316722--55316784 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
55316712 CAAGAACCAT
*
55316722 ATAACGGGAAGCTCATGAGAGCCAA
1 ATAATGGGAAGCTCATGAGAGCCAA
* * * *
55316747 ATATTAGGATGCTCATGAGAG-CTA
1 ATAATGGGAAGCTCATGAGAGCCAA
*
55316771 ATAATGGGACGCTC
1 ATAATGGGAAGCTC
55316785 TTTTGAGCTG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
24 13 0.43
25 17 0.57
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (25 bp):
ATAATGGGAAGCTCATGAGAGCCAA
Found at i:55318923 original size:26 final size:26
Alignment explanation
Indices: 55318894--55318969 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
55318884 TTTCATCCCT
*
55318894 ATTTTACCCCCAGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGATG
*
55318920 ATTTTA-CCCTTGATAAAATTTTGATG
1 ATTTTACCCCTAG-TAAAATTTTGATG
*
55318946 ATTTTACCCCTGGTAAAATTTTGA
1 ATTTTACCCCTAGTAAAATTTTGA
55318970 GAAAATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 4 0.09
26 36 0.80
27 5 0.11
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGATG
Found at i:55320828 original size:12 final size:11
Alignment explanation
Indices: 55320811--55320867 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 11
55320801 AACAAATCCT
55320811 CTCTCATATTTC
1 CTCTCA-ATTTC
55320823 CTCTCAA-TTC
1 CTCTCAATTTC
55320833 CTCTCAATTTC
1 CTCTCAATTTC
*
55320844 CT-TCCAAAATT-
1 CTCT-C-AATTTC
55320855 CTCTCAATTTC
1 CTCTCAATTTC
55320866 CT
1 CT
55320868 TCCAAAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
10 15 0.39
11 12 0.32
12 11 0.29
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:55320858 original size:22 final size:22
Alignment explanation
Indices: 55320828--55320880 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
55320818 ATTTCCTCTC
55320828 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
55320851 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
55320873 AATTCTCT
1 AATTCTCT
55320881 TAAATCCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:55322074 original size:7 final size:7
Alignment explanation
Indices: 55322064--55322102 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
55322054 ATTCGATTGA
55322064 TATTTAG
1 TATTTAG
55322071 TATTTAG
1 TATTTAG
55322078 TATTTAG
1 TATTTAG
55322085 TATTTAG
1 TATTTAG
55322092 TATTTAG
1 TATTTAG
55322099 TATT
1 TATT
55322103 ATGTATATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:55322777 original size:18 final size:18
Alignment explanation
Indices: 55322751--55322785 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
55322741 AGGTGCGTTT
*
55322751 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
55322769 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
55322786 TCCTTTTTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:55326060 original size:22 final size:22
Alignment explanation
Indices: 55326035--55326093 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
55326025 TTATGCTTTA
*
55326035 TATATATTATTTTA-ATATATAT
1 TATATATTATATTATAT-TATAT
55326057 TATATATTATATTATATTATA-
1 TATATATTATATTATATTATAT
*
55326078 T-TGTATTATATTATAT
1 TATATATTATATTATAT
55326094 AAGTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 1 0.03
22 17 0.50
23 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TATATATTATATTATATTATAT
Found at i:55326067 original size:5 final size:5
Alignment explanation
Indices: 55326032--55326093 Score: 65
Period size: 5 Copynumber: 12.2 Consensus size: 5
55326022 TTTTTATGCT
*
55326032 TTATA -TATA TTATT TTA-A TATATA TTATATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA T-TATA -T-TATA TTATA TTATA TTATA
*
55326078 TTGTA TTATA TTATA T
1 TTATA TTATA TTATA T
55326094 AAGTAAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 5 0.10
5 36 0.73
6 2 0.04
7 6 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:55328946 original size:7 final size:7
Alignment explanation
Indices: 55328934--55328964 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
55328924 TGGTGCATGC
55328934 ATATGAA
1 ATATGAA
55328941 ATATGAA
1 ATATGAA
55328948 ATATGAA
1 ATATGAA
55328955 ATATGAA
1 ATATGAA
55328962 ATA
1 ATA
55328965 AAATACAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (7 bp):
ATATGAA
Found at i:55349325 original size:20 final size:20
Alignment explanation
Indices: 55349300--55349337 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
55349290 ATGCTAACAA
55349300 AGGCACCAAAGTGCAATCAG
1 AGGCACCAAAGTGCAATCAG
*
55349320 AGGCACCGAAGTGCAATC
1 AGGCACCAAAGTGCAATC
55349338 CCGTACAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGCACCAAAGTGCAATCAG
Found at i:55350170 original size:21 final size:19
Alignment explanation
Indices: 55350124--55350178 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
55350114 TGTTAAAAAT
55350124 AATTAAAAT--AAGTAATAA
1 AATTAAAATAAAAG-AATAA
55350142 AATTAAAATAAAAGAATAA
1 AATTAAAATAAAAGAATAA
*
55350161 AAGGTTAAAATATAAGAA
1 AA--TTAAAATAAAAGAA
55350179 AACATAATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 3 0.09
21 13 0.41
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (19 bp):
AATTAAAATAAAAGAATAA
Found at i:55351169 original size:39 final size:40
Alignment explanation
Indices: 55351100--55351220 Score: 149
Period size: 39 Copynumber: 3.0 Consensus size: 40
55351090 GCGTTATACT
* * *
55351100 TTCTGTTTGACATGATTCGAGTGGATCAGCTCTTATGAGC
1 TTCTGTTTGGCATGTTTCGGGTGGATCAGCTCTTATGAGC
*
55351140 TTCTG-TTGGCATGTTTCGGGTGGACCAGCTCTTATGAGC
1 TTCTGTTTGGCATGTTTCGGGTGGATCAGCTCTTATGAGC
* *
55351179 TTCTGTTTGG--TGCATTTCGGTTGGATCAACTCTTATGAGC
1 TTCTGTTTGGCATG--TTTCGGGTGGATCAGCTCTTATGAGC
55351219 TT
1 TT
55351221 TTGTCTGGTG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.03
39 35 0.49
40 34 0.48
ACGTcount: A:0.16, C:0.18, G:0.26, T:0.40
Consensus pattern (40 bp):
TTCTGTTTGGCATGTTTCGGGTGGATCAGCTCTTATGAGC
Found at i:55351212 original size:40 final size:41
Alignment explanation
Indices: 55351115--55351230 Score: 141
Period size: 40 Copynumber: 2.9 Consensus size: 41
55351105 TTTGACATGA
*
55351115 TTCGAGTGGATCAGCTCTTATGAGCTTCTG-TT-G-GCATGT
1 TTCGGGTGGATCAGCTCTTATGAGCTTCTGTTTGGTGCA-GT
*
55351154 TTCGGGTGGACCAGCTCTTATGAGCTTCTGTTTGGTGCA-T
1 TTCGGGTGGATCAGCTCTTATGAGCTTCTGTTTGGTGCAGT
* * * *
55351194 TTCGGTTGGATCAACTCTTATGAGCTTTTGTCTGGTG
1 TTCGGGTGGATCAGCTCTTATGAGCTTCTGTTTGGTG
55351231 TGTTCGGTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 28 0.42
40 35 0.52
41 1 0.01
42 3 0.04
ACGTcount: A:0.14, C:0.18, G:0.28, T:0.40
Consensus pattern (41 bp):
TTCGGGTGGATCAGCTCTTATGAGCTTCTGTTTGGTGCAGT
Found at i:55354235 original size:23 final size:22
Alignment explanation
Indices: 55354190--55354236 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
55354180 CGAAAATATA
*
55354190 TTAAATATATATATTTTTATTT
1 TTAAATATATATAGTTTTATTT
*
55354212 TTAAA-ATATACTAGTTTTAGTT
1 TTAAATATATA-TAGTTTTATTT
55354234 TTA
1 TTA
55354237 TTTTAAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (22 bp):
TTAAATATATATAGTTTTATTT
Found at i:55354299 original size:16 final size:16
Alignment explanation
Indices: 55354278--55354344 Score: 54
Period size: 16 Copynumber: 4.5 Consensus size: 16
55354268 TTGTTATAAG
55354278 AATTAATACAATTAAC
1 AATTAATACAATTAAC
* * *
55354294 AATTAATA-ATTTGAT
1 AATTAATACAATTAAC
*
55354309 AATT-TTAC---TAAC
1 AATTAATACAATTAAC
*
55354321 AATTAATACAATTCAC
1 AATTAATACAATTAAC
55354337 AATTAATA
1 AATTAATA
55354345 ATTTTACTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
12 6 0.16
13 3 0.08
14 2 0.05
15 8 0.21
16 19 0.50
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.37
Consensus pattern (16 bp):
AATTAATACAATTAAC
Found at i:55354357 original size:19 final size:19
Alignment explanation
Indices: 55354307--55354357 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
55354297 TAATAATTTG
55354307 ATAATTTTACTAACAATTA
1 ATAATTTTACTAACAATTA
*
55354326 ATACA-ATT-C--ACAATTA
1 ATA-ATTTTACTAACAATTA
55354342 ATAATTTTACTAACAA
1 ATAATTTTACTAACAA
55354358 AATGTTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 1 0.04
16 12 0.48
17 1 0.04
18 1 0.04
19 9 0.36
20 1 0.04
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATTTTACTAACAATTA
Found at i:55354383 original size:83 final size:84
Alignment explanation
Indices: 55354285--55354451 Score: 214
Period size: 86 Copynumber: 2.0 Consensus size: 84
55354275 AAGAATTAAT
*
55354285 ACAATTAACAATTAATAATTTG-ATAATTTTACTAACAATTAAT-ACAATT-CACAATTAATAAT
1 ACAATTAACAATTAATAATTTGAATAATTTGA-TAA-AATTAATAACAATTACACAATTAATAAT
55354347 TTTACTAACAAAATGTTAGTA
64 TTTACTAACAAAATGTTAGTA
* ** * * *
55354368 ACAATTAATAATTAATAATTTGATATAATTTGATAATTTTAGTAACAATTAATACAATTGATAAT
1 ACAATTAACAATTAATAATTTGA-ATAATTTGATAAAATTAATAACAATT-ACACAATTAATAAT
55354433 TTTACTAACAAAATGTTAG
64 TTTACTAACAAAATGTTAG
55354452 ATTTTACAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
83 25 0.35
84 9 0.12
85 8 0.11
86 30 0.42
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (84 bp):
ACAATTAACAATTAATAATTTGAATAATTTGATAAAATTAATAACAATTACACAATTAATAATTT
TACTAACAAAATGTTAGTA
Found at i:55354514 original size:26 final size:29
Alignment explanation
Indices: 55354488--55354549 Score: 74
Period size: 32 Copynumber: 2.1 Consensus size: 29
55354478 AAAAATATAA
55354488 TTTGAT-AC-AATTTTAATAACAATTAAT
1 TTTGATAACTAATTTTAATAACAATTAAT
*
55354515 TTTGATAACATTTAATTTTAATAACAATTAGT
1 TTTGATAAC---TAATTTTAATAACAATTAAT
55354547 TTT
1 TTT
55354550 AATTTTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 6 0.21
28 2 0.07
32 21 0.72
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTGATAACTAATTTTAATAACAATTAAT
Found at i:55354515 original size:16 final size:16
Alignment explanation
Indices: 55354496--55354552 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
55354486 AATTTGATAC
55354496 AATTTTAATAACAATT
1 AATTTTAATAACAATT
* *
55354512 AATTTTGATAACATTT
1 AATTTTAATAACAATT
55354528 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
55354544 AGTTTTAAT
1 AATTTTAAT
55354553 TTTAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:55354550 original size:22 final size:23
Alignment explanation
Indices: 55354525--55354587 Score: 92
Period size: 22 Copynumber: 2.7 Consensus size: 23
55354515 TTTGATAACA
* *
55354525 TTTAATTTTAATAACAAT-TAGT
1 TTTAATTTTAATAAAAATATAAT
55354547 TTTAATTTTAATAAAAATATAAT
1 TTTAATTTTAATAAAAATATAAT
55354570 TTTAATTTTAATTAAAAA
1 TTTAATTTTAA-TAAAAA
55354588 ACGGGACGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 17 0.46
23 14 0.38
24 6 0.16
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTAATTTTAATAAAAATATAAT
Found at i:55354652 original size:6 final size:6
Alignment explanation
Indices: 55354636--55354664 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
55354626 TTTTTTCCGC
55354636 GGGCC- GGGCCT GGGCCT GGGCCT GGGCCT
1 GGGCCT GGGCCT GGGCCT GGGCCT GGGCCT
55354665 AGGAAGCGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.34, G:0.52, T:0.14
Consensus pattern (6 bp):
GGGCCT
Found at i:55366356 original size:11 final size:10
Alignment explanation
Indices: 55366337--55366419 Score: 67
Period size: 11 Copynumber: 7.5 Consensus size: 10
55366327 TTTTGCAGGT
55366337 TTTTGGTGTTG
1 TTTT-GTGTTG
55366348 TTTTAGTGTTG
1 TTTT-GTGTTG
*
55366359 TTTGTGATGCTGTT
1 TTT-TG-TG-T-TG
55366373 TTTTGTGTTG
1 TTTTGTGTTG
*
55366383 TTTTGATGCTG
1 TTTTG-TGTTG
*
55366394 TTTGGTGTTG
1 TTTTGTGTTG
55366404 TTTTGATGTTG
1 TTTTG-TGTTG
55366415 TTTTG
1 TTTTG
55366420 GTGCTACTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
10 14 0.24
11 33 0.56
12 5 0.08
13 3 0.05
14 4 0.07
ACGTcount: A:0.05, C:0.02, G:0.30, T:0.63
Consensus pattern (10 bp):
TTTTGTGTTG
Found at i:55366372 original size:23 final size:22
Alignment explanation
Indices: 55366337--55366418 Score: 94
Period size: 21 Copynumber: 3.7 Consensus size: 22
55366327 TTTTGCAGGT
* *
55366337 TTTTGGTGTTGTTTTAGTGTTG
1 TTTTGATGCTGTTTTAGTGTTG
*
55366359 TTTGTGATGCTGTTTTTTGTGTTG
1 TTT-TGATGCTG-TTTTAGTGTTG
*
55366383 TTTTGATGCTG-TTTGGTGTTG
1 TTTTGATGCTGTTTTAGTGTTG
*
55366404 TTTTGATGTTGTTTT
1 TTTTGATGCTGTTTT
55366419 GGTGCTACTT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
21 19 0.37
22 6 0.12
23 14 0.27
24 13 0.25
ACGTcount: A:0.05, C:0.02, G:0.29, T:0.63
Consensus pattern (22 bp):
TTTTGATGCTGTTTTAGTGTTG
Found at i:55366630 original size:41 final size:40
Alignment explanation
Indices: 55366576--55366660 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 40
55366566 TATAACCAGT
*
55366576 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
* * * * *
55366616 TTTTAGTATCATTTTTTATTTGTTTCTTGTTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTGTTTTAAGAATTG
55366657 TTTT
1 TTTT
55366661 TATGTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.20, C:0.02, G:0.11, T:0.67
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
Found at i:55367028 original size:22 final size:22
Alignment explanation
Indices: 55366986--55367028 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
55366976 ATACTCTTCG
* *
55366986 TACTTTTAAATTTTAGTATTTT
1 TACTTTTAAATTTAAGAATTTT
55367008 TACTTTT-AATTCTAAGAATTT
1 TACTTTTAAATT-TAAGAATTT
55367029 AACCCCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (22 bp):
TACTTTTAAATTTAAGAATTTT
Found at i:55386724 original size:15 final size:16
Alignment explanation
Indices: 55386704--55386747 Score: 72
Period size: 17 Copynumber: 2.8 Consensus size: 16
55386694 CAAACAAAAC
55386704 AAAACAAATAAAC-CA
1 AAAACAAATAAACACA
55386719 AAAACAAATAAACAACA
1 AAAACAAATAAAC-ACA
55386736 AAAACAAATAAA
1 AAAACAAATAAA
55386748 AGTCTAGTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 13 0.48
17 14 0.52
ACGTcount: A:0.77, C:0.16, G:0.00, T:0.07
Consensus pattern (16 bp):
AAAACAAATAAACACA
Found at i:55396576 original size:15 final size:15
Alignment explanation
Indices: 55396556--55396588 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
55396546 CGATATTATT
55396556 AATATTATGTATACG
1 AATATTATGTATACG
55396571 AATATTATGTATACG
1 AATATTATGTATACG
55396586 AAT
1 AAT
55396589 GACACCAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (15 bp):
AATATTATGTATACG
Found at i:55406816 original size:25 final size:24
Alignment explanation
Indices: 55406784--55406832 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
55406774 TGTTAAAATT
55406784 TAAAGAAAATTGGAAGATCTGTAAA
1 TAAAGAAAATTGGAAGATCT-TAAA
55406809 TAAAGAAAATTGGAAGATCTTAAA
1 TAAAGAAAATTGGAAGATCTTAAA
55406833 GTTGTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.24
Consensus pattern (24 bp):
TAAAGAAAATTGGAAGATCTTAAA
Found at i:55424326 original size:51 final size:50
Alignment explanation
Indices: 55424244--55424584 Score: 301
Period size: 51 Copynumber: 6.7 Consensus size: 50
55424234 GATGAACACG
*
55424244 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGAAAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAAT-ATGGTCACA
* * * ** * * *
55424295 TGTGTAGTACTAAGTGAAGGCTACAATGTGTATCGAGAAGCTTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-AAAATATGGTCACA
* * * * *
55424346 TGTGCAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAAT-ATGGTCACA
* * * * * * *
55424397 TGTGTAGTACTAAGTGAAGGATACTATGTGTACCGAAAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAA-ATATGGTCACA
* * * * *
55424448 TGTGTAGTACTATGTGAAGGCTACTACGT-AAACCATAAAACT-TGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-AAAA-TATGGTCACA
* * * * *
55424498 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT-TGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCG-AAAAATATGGTCACA
* *
55424548 TGTGCAGTACTATGTGAAGGCTACTACGCGTATCGAA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
55424585 TGATAAAAGT
Statistics
Matches: 234, Mismatches: 49, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
49 2 0.01
50 81 0.35
51 146 0.62
52 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAATATGGTCACA
Found at i:55424416 original size:102 final size:101
Alignment explanation
Indices: 55424240--55424575 Score: 426
Period size: 102 Copynumber: 3.3 Consensus size: 101
55424230 TATCGATGAA
* * * *
55424240 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGAAAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGCAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
55424305 TAAGTGAAGGCTACAATGTGTATCGAGAAGCTTTGAT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGAT
* * *
55424342 CACGTGTGCAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGCAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
55424407 TAAGTGAAGGATACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGAT
* * * * * *
55424444 CACGTGTGTAGTACTATGTGAAGGCTACTACGT-AAACCATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGCAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA-ATGGTCACATGTGTAGTA
* * * *
55424507 CTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
65 CTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGAT
55424544 CACGTGTGCAGTACTATGTGAAGGCTACTACG
1 CACGTGTGCAGTACTATGTGAAGGCTACTACG
55424576 CGTATCGAAT
Statistics
Matches: 206, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
100 35 0.17
101 49 0.24
102 121 0.59
103 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGCAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGAT
Found at i:55427572 original size:50 final size:50
Alignment explanation
Indices: 55427448--55427744 Score: 292
Period size: 50 Copynumber: 5.8 Consensus size: 50
55427438 GATAATAACA
* * ** * *
55427448 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * * **
55427497 TACCAATGTCATATCCCAGATATGGTCTTACATGGGAATTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** * *
55427547 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
55427597 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
55427647 TGCCAACGCCATGTCCCAGACATGGTCTTGCATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG
* *
55427702 ATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
55427745 TTACCCAAAT
Statistics
Matches: 204, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 124 0.61
53 2 0.01
55 2 0.01
56 38 0.19
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:55432104 original size:50 final size:50
Alignment explanation
Indices: 55432029--55432128 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
55432019 ACCATTCGAC
55432029 CATATTAAGGAATCACTAGGAGAAGGGTTTTTACGACCCAAAATAATCTT
1 CATATTAAGGAATCACTAGGAGAAGGGTTTTTACGACCCAAAATAATCTT
*
55432079 CATATTAAGGAATCATTAGGAGAAGGGTTTTTACGACCCAAAATAATCTT
1 CATATTAAGGAATCACTAGGAGAAGGGTTTTTACGACCCAAAATAATCTT
55432129 TACTTACACT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (50 bp):
CATATTAAGGAATCACTAGGAGAAGGGTTTTTACGACCCAAAATAATCTT
Found at i:55433685 original size:29 final size:29
Alignment explanation
Indices: 55433631--55433722 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
55433621 CTGGGCATAC
* * *
55433631 GCCCGTATGCTTCACACGGTCATGTGATA
1 GCCCGTGTACTTCACACAGTCATGTGATA
* *
55433660 GCCTGTGTACTTCACACAGTCGTGTGATA
1 GCCCGTGTACTTCACACAGTCATGTGATA
* *
55433689 GCCCGTGT-CCTCTACACA-ACTATGTGATA
1 GCCCGTGTACTTC-ACACAGTC-ATGTGATA
55433718 GCCCG
1 GCCCG
55433723 AGTCCTAGGC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 4 0.08
29 48 0.92
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (29 bp):
GCCCGTGTACTTCACACAGTCATGTGATA
Found at i:55434542 original size:40 final size:39
Alignment explanation
Indices: 55434435--55434542 Score: 101
Period size: 39 Copynumber: 2.7 Consensus size: 39
55434425 CGTTTGAGCT
* * * *
55434435 ACTTTCAATAGAATCATTAGGTATGGCTCGATAAAGCAT
1 ACTTTCAGTAGAATCAGTAAGTATGGCTCGATAAAGCAC
* * * *
55434474 ACTTTCAGTAGAATCATTAGGTAAGGCTCGATAGTA-CAC
1 ACTTTCAGTAGAATCAGTAAGTATGGCTCGATA-AAGCAC
* *
55434513 ACATTTCAGTGGGATCAGTAAGTATGGCTC
1 AC-TTTCAGTAGAATCAGTAAGTATGGCTC
55434543 AAAAGCGCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.60
40 23 0.40
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (39 bp):
ACTTTCAGTAGAATCAGTAAGTATGGCTCGATAAAGCAC
Found at i:55437554 original size:16 final size:16
Alignment explanation
Indices: 55437533--55437568 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
55437523 TTTGGTTCGC
55437533 TGTATTAGATTAGAGG
1 TGTATTAGATTAGAGG
*
55437549 TGTATTGGATTAGAGG
1 TGTATTAGATTAGAGG
55437565 TGTA
1 TGTA
55437569 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTAGATTAGAGG
Found at i:55437825 original size:18 final size:17
Alignment explanation
Indices: 55437804--55437838 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
55437794 TTATTATTAA
*
55437804 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
55437822 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55437839 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55437975 original size:156 final size:157
Alignment explanation
Indices: 55437691--55438006 Score: 562
Period size: 156 Copynumber: 2.0 Consensus size: 157
55437681 TAGAATACCC
*
55437691 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
55437756 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACACAATTATTATTAAATATATTTTAATTAAAA
55437821 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
55437847 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
55437912 ATATCAATAATAAATAATTTAATCATATTTAAACACAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACACAATTATTATTAAATATATTTTAATTAAAA
*
55437977 TATATAATTTGATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
55438004 TTA
1 TTA
55438007 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
156 145 0.95
157 7 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACACAATTATTATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:55438101 original size:18 final size:17
Alignment explanation
Indices: 55438080--55438114 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
55438070 TTATTATTAA
*
55438080 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
55438098 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55438115 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55438228 original size:14 final size:15
Alignment explanation
Indices: 55438179--55438230 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
55438169 GTAAAATATA
55438179 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
55438194 TATTAAATATATTAT
1 AATTAAATATATTAT
55438209 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
55438222 AATTTAATA
1 AATTAAATA
55438231 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:55438366 original size:120 final size:120
Alignment explanation
Indices: 55437943--55438348 Score: 701
Period size: 120 Copynumber: 3.4 Consensus size: 120
55437933 ATCATATTTA
* *
55437943 AACACAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
55438008 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
55438063 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
55438128 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
55438183 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
55438248 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAAA-TT
* * *
55438303 GAA-ATAATTAATATTAAATATATTTTAATTATAATATATGATTTAA
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAA
55438349 AATAATTTAA
Statistics
Matches: 275, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
119 7 0.03
120 266 0.97
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:55438568 original size:92 final size:92
Alignment explanation
Indices: 55438386--55438579 Score: 250
Period size: 92 Copynumber: 2.1 Consensus size: 92
55438376 AACTATATTT
* * * *
55438386 TATGAATTTGTATAATCTAAAATAATAATTATTACATATAATTTAATAATTAATATTAAATTTCA
1 TATGAATTTATACAATCTAAAATAATAATTATTAAATATAATTTAATAATGAATATTAAATTTCA
**
55438451 TAAAATGCTTGATAATAAATTTTCTTA
66 TAAAATGCTCAATAATAAATTTTCTTA
* *
55438478 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATACTG-ATA-TATAATTT
1 TATGAATTTATACAATCTAAAATAA-TAATTATTAAATATAATTTAATAATGAATATTA-AATTT
*
55438540 CATAAAATTCTCAATAATAAATTGTTCTTA
64 CATAAAATGCTCAATAATAAATT-TTCTTA
*
55438570 TATAAATTTA
1 TATGAATTTA
55438580 CTAAAATCAT
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
90 2 0.02
91 28 0.31
92 56 0.63
93 3 0.03
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (92 bp):
TATGAATTTATACAATCTAAAATAATAATTATTAAATATAATTTAATAATGAATATTAAATTTCA
TAAAATGCTCAATAATAAATTTTCTTA
Found at i:55442107 original size:23 final size:23
Alignment explanation
Indices: 55442080--55442152 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
55442070 TTATATTAAT
55442080 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
* * * ***
55442103 ATTATAT-TTC-AATTAAAAAT-
1 ATTATATAATCAAAATGATTTTA
55442123 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
55442146 ATTATAT
1 ATTATAT
55442153 TTTAATATAC
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 7 0.20
21 7 0.20
22 7 0.20
23 14 0.40
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (23 bp):
ATTATATAATCAAAATGATTTTA
Found at i:55443080 original size:52 final size:52
Alignment explanation
Indices: 55443023--55443244 Score: 241
Period size: 52 Copynumber: 4.0 Consensus size: 52
55443013 GGTGTTAACT
*
55443023 CATTTCAAACATTTCAAAGCATTCAAAGTTAATAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* ** *
55443075 CATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAA-AGT-TGAAGTGGTAACAGCA
1 CATTTCAAACA-TT-TC----A--AAGCA-TTCAAAG--TT-AACAGTACCAAAT--TAACAGCA
55443138 C
52 C
*
55443139 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAACAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
*
55443191 CATTTCAAACATTTCAAAGCATTCAAAATTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
55443243 CA
1 CA
55443245 GGACTATGCA
Statistics
Matches: 143, Mismatches: 11, Indels: 32
0.77 0.06 0.17
Matches are distributed among these distances:
52 73 0.51
53 7 0.05
54 5 0.03
55 7 0.05
56 4 0.03
58 2 0.01
60 4 0.03
61 7 0.05
62 5 0.03
63 7 0.05
64 22 0.15
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.26
Consensus pattern (52 bp):
CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
Found at i:55445624 original size:30 final size:30
Alignment explanation
Indices: 55445558--55445637 Score: 83
Period size: 30 Copynumber: 2.6 Consensus size: 30
55445548 AAACTAAGAT
*
55445558 ATATAAAATTATTTAAATAATTATGTTGTA
1 ATATAAAATTATATAAATAATTATGTTGTA
* *
55445588 ATATAAAATTATATAATTATGTTATGATT-TA
1 ATATAAAATTATATAAATA-ATTATG-TTGTA
55445619 A-ATAAAATTACTTATAAAT
1 ATATAAAATTA--TATAAAT
55445638 CCGTGTTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
30 26 0.62
31 8 0.19
32 8 0.19
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (30 bp):
ATATAAAATTATATAAATAATTATGTTGTA
Found at i:55467781 original size:27 final size:27
Alignment explanation
Indices: 55467750--55467901 Score: 155
Period size: 27 Copynumber: 5.6 Consensus size: 27
55467740 TAAATTGTAC
55467750 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
55467777 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
55467803 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
55467831 GGCACTAAGTGTGCGAGTTTGACT-TGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
55467858 AGCACTAAGTGTTTGCGATTTGATTATAT
1 AGCACTAAGTG--TGCGATTTGACTATGT
*
55467887 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
55467902 GACTCAATAT
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
27 75 0.73
28 11 0.11
29 17 0.17
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:55467889 original size:29 final size:28
Alignment explanation
Indices: 55467832--55467898 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
55467822 TGACCATGCG
*
55467832 GCACTAAGTG-TGCGAGTTTGACTTGTA
1 GCACTAAGTGTTGCGAGTTTGACTTATA
*
55467859 GCACTAAGTGTTTGCGA-TTTGATTATATA
1 GCACTAAGTG-TTGCGAGTTTGACT-TATA
*
55467888 GCACTGAGTGT
1 GCACTAAGTGT
55467899 GCGGACTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 10 0.29
28 7 0.21
29 17 0.50
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (28 bp):
GCACTAAGTGTTGCGAGTTTGACTTATA
Found at i:55475891 original size:27 final size:27
Alignment explanation
Indices: 55475860--55476010 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
55475850 TAAATTGTAC
55475860 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
55475887 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
55475913 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* * *
55475941 GGCACTAAGTGTGCGAGTTTGATTACGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
55475969 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
55475996 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
55476011 GACTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 82 0.80
28 21 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:55475921 original size:54 final size:55
Alignment explanation
Indices: 55475860--55476010 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 55
55475850 TAAATTGTAC
* *
55475860 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATACGT
* * ** ** *
55475913 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGATTACGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATACGT
* * *
55475969 AGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
55476011 GACTCAATAT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 40 0.50
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATACGT
Found at i:55475979 original size:82 final size:81
Alignment explanation
Indices: 55475861--55476010 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
55475851 AAATTGTACA
* *
55475861 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
55475925 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** * *
55475942 GCACTAAGTGTGCGAGTTTGATTACGTAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTACGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
55476007 TGCG
65 TGCG
55476011 GACTCAATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 17 0.28
82 43 0.72
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:55484479 original size:41 final size:41
Alignment explanation
Indices: 55484422--55484501 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
55484412 GTTGTTTCCT
55484422 TCTTCAATGTTGAGCACCGAGCCCTTCCCTTTGTCAACTGC
1 TCTTCAATGTTGAGCACCGAGCCCTTCCCTTTGTCAACTGC
*
55484463 TCTTCAATGTTGAGCACCGAGCCCTTTCCTTTGTCAACT
1 TCTTCAATGTTGAGCACCGAGCCCTTCCCTTTGTCAACT
55484502 CCTCCAGTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.17, C:0.33, G:0.16, T:0.34
Consensus pattern (41 bp):
TCTTCAATGTTGAGCACCGAGCCCTTCCCTTTGTCAACTGC
Found at i:55488680 original size:13 final size:13
Alignment explanation
Indices: 55488662--55488700 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
55488652 TATTTTTTTA
55488662 AAAAAATAATTAC
1 AAAAAATAATTAC
* *
55488675 AAAAAA-AAATAA
1 AAAAAATAATTAC
55488687 AAAAAATAATTAC
1 AAAAAATAATTAC
55488700 A
1 A
55488701 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAAATAATTAC
Found at i:55490317 original size:12 final size:11
Alignment explanation
Indices: 55490289--55490338 Score: 68
Period size: 10 Copynumber: 4.6 Consensus size: 11
55490279 TTATATTTTT
55490289 TATTTTTAAAA
1 TATTTTTAAAA
55490300 TATTTTTAAAA
1 TATTTTTAAAA
55490311 TACTTTTTAAAA
1 TA-TTTTTAAAA
*
55490323 T-TTTCTAAAA
1 TATTTTTAAAA
55490333 T-TTTTT
1 TATTTTT
55490339 TTGGTGTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
10 13 0.36
11 13 0.36
12 10 0.28
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:55490340 original size:22 final size:23
Alignment explanation
Indices: 55490291--55490333 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
55490281 ATATTTTTTA
*
55490291 TTTTTAAAATATTTTTAAAATAC
1 TTTTTAAAATATTTCTAAAATAC
55490314 TTTTTAAAAT-TTTCTAAAAT
1 TTTTTAAAATATTTCTAAAAT
55490334 TTTTTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTAAAATATTTCTAAAATAC
Found at i:55499102 original size:20 final size:21
Alignment explanation
Indices: 55499064--55499102 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
55499054 CACCAAAAAG
*
55499064 AACAAGCAACAAACGGAGAAA
1 AACAAGCAACAAACCGAGAAA
*
55499085 AACAA-CAAGAAACCGAGA
1 AACAAGCAACAAACCGAGA
55499103 TCCAAAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.62, C:0.21, G:0.18, T:0.00
Consensus pattern (21 bp):
AACAAGCAACAAACCGAGAAA
Found at i:55501507 original size:3 final size:3
Alignment explanation
Indices: 55501499--55501524 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
55501489 GATTTAGTCC
55501499 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
55501525 CCTATTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:55513225 original size:1 final size:1
Alignment explanation
Indices: 55513219--55513246 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
55513209 TTTGCTTCCT
55513219 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
55513247 CTTTGGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Done.