Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 204 of 211
Found at i:60108350 original size:59 final size:60
Alignment explanation
Indices: 60108234--60108346 Score: 133
Period size: 59 Copynumber: 1.9 Consensus size: 60
60108224 GTAAGGCAAC
* * **
60108234 AATAAATAAATAAATAAGCAAATAAAAAAATTATGAAAGGCTGAAATTGCCATAATAAATA
1 AATAAATAAATAAATAA-CAAACAAAAAAATAATGAAAGGCTGAAATTGAAATAATAAATA
* *
60108295 AATAAATAAGTAAATAA-TAACAAAAAAATAATG-AAGAGCTGAAATT-AAATAA
1 AATAAATAAATAAATAACAAACAAAAAAATAATGAAAG-GCTGAAATTGAAATAA
60108347 ATAATGAGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
58 7 0.16
59 22 0.49
61 16 0.36
ACGTcount: A:0.63, C:0.05, G:0.10, T:0.22
Consensus pattern (60 bp):
AATAAATAAATAAATAACAAACAAAAAAATAATGAAAGGCTGAAATTGAAATAATAAATA
Found at i:60110122 original size:44 final size:44
Alignment explanation
Indices: 60110044--60110383 Score: 164
Period size: 44 Copynumber: 7.8 Consensus size: 44
60110034 ATCTACTTCG
* *
60110044 CTGCAACCTCAAGGAGATGAGATTTATAGTTTTAATCAGCTCCA
1 CTGCAACTTCAAGGAGATGAGATTTATAGCTTTAATCAGCTCCA
* * *
60110088 CT-CTAACTTCAAGGAGAT-ATGATTTATGGCTTTAATCTGTTCCA
1 CTGC-AACTTCAAGGAGATGA-GATTTATAGCTTTAATCAGCTCCA
* * * * *
60110132 CTGCAACTTTAAGGAGATGTGGTTT-TA---AT-AT--GCTCTA
1 CTGCAACTTCAAGGAGATGAGATTTATAGCTTTAATCAGCTCCA
* * * * * ** *
60110169 CTACAACTTCAAAGAGATAAGAGTTACTATCTTCT-ATTTGTTCCA
1 CTGCAACTTCAAGGAGATGAGATTTA-TAGCTT-TAATCAGCTCCA
* * * * * *
60110214 CTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTA
1 CTGCAACTTCAAGGAGATGAGATTTATAGCTTTAATCAGCTCCA
* * * * * * * *
60110258 TTGCAACTT-TAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTA
1 CTGCAACTTCAAG-GAGATGAGATTT-ATAGCTTTAATCAGCTCCA
* * * * *
60110303 CTGCAACTTCAAGGAGATAAGATTTATTGCTTCAATCTGCTCTA
1 CTGCAACTTCAAGGAGATGAGATTTATAGCTTTAATCAGCTCCA
* * * *
60110347 TTGCAACTT-TAGAGAGATAAGATTTGTAGCTTTAATC
1 CTGCAACTTCAAG-GAGATGAGATTTATAGCTTTAATC
60110384 TATTCCACTT
Statistics
Matches: 232, Mismatches: 47, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
37 22 0.09
39 4 0.02
40 1 0.00
43 9 0.04
44 131 0.56
45 63 0.27
46 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (44 bp):
CTGCAACTTCAAGGAGATGAGATTTATAGCTTTAATCAGCTCCA
Found at i:60110308 original size:45 final size:45
Alignment explanation
Indices: 60110162--60110372 Score: 241
Period size: 44 Copynumber: 4.7 Consensus size: 45
60110152 GGTTTTAATA
* * * * * *
60110162 TGCTCTACTACAACTTCAAAGAGATAAGAGTTACTATCTTCTATT
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATC
* * * *
60110207 TGTTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATC
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATC
* *
60110251 TGCTCTATTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATC
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATC
*
60110296 TGCTCTACTGCAACTTCA-AGGAGATAAGATTT-AT-TGCTTCAATC
1 TGCTCTACTGCAACTTCAGA-GAGATAAGATTTGCTAT-CTTCAATC
* *
60110340 TGCTCTATTGCAACTTTAGAGAGATAAGATTTG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTG
60110373 TAGCTTTAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
43 1 0.01
44 74 0.53
45 65 0.46
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (45 bp):
TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATC
Found at i:60110313 original size:89 final size:89
Alignment explanation
Indices: 60110162--60110372 Score: 305
Period size: 89 Copynumber: 2.4 Consensus size: 89
60110152 GGTTTTAATA
* * * * * * * * * *
60110162 TGCTCTACTACAACTTCAAAGAGATAAGAGTTACTATCTTCTATTTGTTCCACTGCAACTTCAGG
1 TGCTCTATTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAG
*
60110227 GAGATAAGATTTGTAGCTTCAATC
66 GAGATAAGATTTATAGCTTCAATC
*
60110251 TGCTCTATTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTACTGCAACTTCAAG
1 TGCTCTATTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAG
*
60110316 GAGATAAGATTTATTGCTTCAATC
66 GAGATAAGATTTATAGCTTCAATC
60110340 TGCTCTATTGCAACTTTAGAGAGATAAGATTTG
1 TGCTCTATTGCAACTTTAGAGAGATAAGATTTG
60110373 TAGCTTTAAT
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 109 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (89 bp):
TGCTCTATTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAG
GAGATAAGATTTATAGCTTCAATC
Found at i:60110384 original size:44 final size:44
Alignment explanation
Indices: 60110215--60110384 Score: 243
Period size: 44 Copynumber: 3.8 Consensus size: 44
60110205 TTTGTTCCAC
*
60110215 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAT
1 TGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTGCTCTAT
* * *
60110259 TGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
1 TGCAACTTCAGAGAGATAAGATTTG-TAGCTTCAATCTGCTCTAT
* *
60110304 TGCAACTTCA-AGGAGATAAGATTTATTGCTTCAATCTGCTCTAT
1 TGCAACTTCAGA-GAGATAAGATTTGTAGCTTCAATCTGCTCTAT
* *
60110348 TGCAACTTTAGAGAGATAAGATTTGTAGCTTTAATCT
1 TGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCT
60110385 ATTCCACTTC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
44 71 0.65
45 39 0.35
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (44 bp):
TGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTGCTCTAT
Found at i:60122109 original size:14 final size:14
Alignment explanation
Indices: 60122090--60122121 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
60122080 TAATAATGAG
60122090 AATACCAATTTTAT
1 AATACCAATTTTAT
60122104 AATACCAATTTTAT
1 AATACCAATTTTAT
60122118 AATA
1 AATA
60122122 ATAATATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (14 bp):
AATACCAATTTTAT
Found at i:60122124 original size:17 final size:17
Alignment explanation
Indices: 60122090--60122160 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
60122080 TAATAATGAG
60122090 AATACCAA-TTT-T-AT
1 AATACCAATTTTATAAT
60122104 AATACCAATTTTATAATAAT
1 AATACCAA-TTT-T-ATAAT
* *
60122124 AATATCGATTTTATAAT
1 AATACCAATTTTATAAT
* *
60122141 AATATCGATTTTATAAT
1 AATACCAATTTTATAAT
60122158 AAT
1 AAT
60122161 GGTACTAATC
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.16
16 2 0.04
17 26 0.53
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (17 bp):
AATACCAATTTTATAAT
Found at i:60122125 original size:20 final size:19
Alignment explanation
Indices: 60122111--60122160 Score: 77
Period size: 17 Copynumber: 2.7 Consensus size: 19
60122101 TATAATACCA
60122111 ATTTTATAATAATAATATCG
1 ATTTTATAATAATAATA-CG
60122131 ATTTTATAATAAT-AT-CG
1 ATTTTATAATAATAATACG
60122148 ATTTTATAATAAT
1 ATTTTATAATAAT
60122161 GGTACTAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 15 0.50
19 2 0.07
20 13 0.43
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (19 bp):
ATTTTATAATAATAATACG
Found at i:60122139 original size:14 final size:17
Alignment explanation
Indices: 60122119--60122160 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
60122109 CAATTTTATA
60122119 ATAATAATATCGATTTT
1 ATAATAATATCGATTTT
60122136 ATAATAATATCGATTTT
1 ATAATAATATCGATTTT
60122153 ATAATAAT
1 ATAATAAT
60122161 GGTACTAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (17 bp):
ATAATAATATCGATTTT
Found at i:60123942 original size:62 final size:62
Alignment explanation
Indices: 60123866--60123990 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
60123856 TTGGGTTGAC
60123866 ATTTTATAAATGGATTGGACTGTTTATTGGACTTTTATTCATTTAGTTTTGTTTATTATATT
1 ATTTTATAAATGGATTGGACTGTTTATTGGACTTTTATTCATTTAGTTTTGTTTATTATATT
60123928 ATTTTATAAATGGATTGGACTGTTTATTGGACTTTTATTCATTTAGTTTTGTTTATTATATT
1 ATTTTATAAATGGATTGGACTGTTTATTGGACTTTTATTCATTTAGTTTTGTTTATTATATT
60123990 A
1 A
60123991 CTTTGTTTAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.25, C:0.05, G:0.14, T:0.56
Consensus pattern (62 bp):
ATTTTATAAATGGATTGGACTGTTTATTGGACTTTTATTCATTTAGTTTTGTTTATTATATT
Found at i:60128526 original size:94 final size:94
Alignment explanation
Indices: 60128274--60128785 Score: 546
Period size: 94 Copynumber: 5.5 Consensus size: 94
60128264 GTGAAACCAC
* * * * * *
60128274 AAATCCTATACCTC-GAAGTTGTAGTGGGTCAGATTGAAATC-ACCACAGTAAATCTTTTCTCCC
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATT-AAATCTACCATAGTGAATCTTATCTCCC
* * *
60128337 TAAAGTTGCAGTGGAGCAGATCGAAGCTAC
65 TGAAGTTGCAGTGGAGCAGATTGAAGCTAA
* **
60128367 AAATCCTGTACCCCCTGAAA-TTGCAGTGGGT--G---GGATCTACCATAGTGAATCTTATCTCC
1 AAATCCTATA-CCCCT-AAAGTTGCAGTGGGTCAGATTAAATCTACCATAGTGAATCTTATCTCC
* *
60128426 CAGAAGTTGTAGTGGAGCAGATTGAAGCTAA
64 CTGAAGTTGCAGTGGAGCAGATTGAAGCTAA
* * *
60128457 AAATCCTAAACCCCTAAAGTTGCAGTGGGTCAGATTAGATCTACCATAGTGAATCTTATCTCCTT
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCATAGTGAATCTTATCTCCCT
60128522 GAAGTTGCAGTGGAGCAGATTGAAGCTAA
66 GAAGTTGCAGTGGAGCAGATTGAAGCTAA
* * * *
60128551 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCGAATCTTATCTCCCT
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCATAGTGAATCTTATCTCCCT
* *
60128616 GAAGTTGCAGTGGAGCAAGA-TAAAACTACA
66 GAAGTTGCAGTGGAGC-AGATTGAAGCTA-A
* * * * * * *
60128646 AATTCC-ATACCCCTAAAGTTGCAATGGAT-TGATTAAAACTA-CAGTGGTGAATTTTATCTCCC
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCA-TAGTGAATCTTATCTCCC
* * * *
60128708 TAAAGTTACAGTGGAGCAAGA-TAAAGCTAC
65 TGAAGTTGCAGTGGAGC-AGATTGAAGCTAA
* *
60128738 AATTCCTATATCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCATA
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCATA
60128786 TAAAGTAGAT
Statistics
Matches: 354, Mismatches: 49, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
88 3 0.01
89 19 0.05
90 52 0.15
91 1 0.00
92 8 0.02
93 80 0.23
94 168 0.47
95 21 0.06
96 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (94 bp):
AAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAATCTACCATAGTGAATCTTATCTCCCT
GAAGTTGCAGTGGAGCAGATTGAAGCTAA
Found at i:60128587 original size:44 final size:44
Alignment explanation
Indices: 60128428--60128673 Score: 146
Period size: 44 Copynumber: 5.3 Consensus size: 44
60128418 TTATCTCCCA
* *
60128428 GAAGTTGTAGTGGAGCAGATTGAAGCTAAAAATCCTAAACCCCT
1 GAAGTTGCAGTGGAGCAGATTGAAGCTAAAAATCCTATACCCCT
* * * *
60128472 AAAGTTGCAGTGG-GTCAGATT-AGATCTACCATAGTGAATCTTAT-CTCCTT
1 GAAGTTGCAGTGGAG-CAGATTGA-AGCTA--A-A---AATCCTATAC-CCCT
60128522 GAAGTTGCAGTGGAGCAGATTGAAGCTAAAAATCCTATACCCCT
1 GAAGTTGCAGTGGAGCAGATTGAAGCTAAAAATCCTATACCCCT
* * *
60128566 GAAGTTGCAGTGG-GTCGGATTGAATCTACCATAGCGAATCTTAT-CTCCCT
1 GAAGTTGCAGTGGAG-CAGATTGAAGCTA--A-A---AATCCTATAC-CCCT
* * *
60128616 GAAGTTGCAGTGGAGCAAGA-TAAAACTACAAATTCC-ATACCCCT
1 GAAGTTGCAGTGGAGC-AGATTGAAGCTA-AAAATCCTATACCCCT
* *
60128660 AAAGTTGCAATGGA
1 GAAGTTGCAGTGGA
60128674 TTGATTAAAA
Statistics
Matches: 159, Mismatches: 20, Indels: 46
0.71 0.09 0.20
Matches are distributed among these distances:
43 3 0.02
44 73 0.46
45 5 0.03
46 2 0.01
47 3 0.02
48 2 0.01
49 4 0.03
50 62 0.39
51 5 0.03
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
GAAGTTGCAGTGGAGCAGATTGAAGCTAAAAATCCTATACCCCT
Found at i:60129145 original size:17 final size:16
Alignment explanation
Indices: 60129123--60129156 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60129113 CCGAAACCAG
60129123 AAATAAATAAACAAAAA
1 AAATAAA-AAACAAAAA
*
60129140 AAATAAAAACCAAAAA
1 AAATAAAAAACAAAAA
60129156 A
1 A
60129157 CAAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAAACAAAAA
Found at i:60130570 original size:15 final size:14
Alignment explanation
Indices: 60130552--60130609 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 14
60130542 ATTATTGTCG
60130552 TTATTATTTTTATTT
1 TTATTATTTTT-TTT
60130567 TTATTATTTTTCTTGT
1 TTATTATTTTT-TT-T
* *
60130583 TATTTTATTATTTCTT
1 T-TATTATT-TTTTTT
60130599 TTATTATTTTT
1 TTATTATTTTT
60130610 GGTACTTTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
14 3 0.08
15 19 0.53
16 4 0.11
17 7 0.19
18 3 0.08
ACGTcount: A:0.17, C:0.03, G:0.02, T:0.78
Consensus pattern (14 bp):
TTATTATTTTTTTT
Found at i:60130590 original size:20 final size:20
Alignment explanation
Indices: 60130565--60130608 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60130555 TTATTTTTAT
*
60130565 TTTTATTATTT-TTCTTGTTA
1 TTTTATTATTTCTT-TTATTA
60130585 TTTTATTATTTCTTTTATTA
1 TTTTATTATTTCTTTTATTA
60130605 TTTT
1 TTTT
60130609 TGGTACTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTATTATTTCTTTTATTA
Found at i:60130714 original size:3 final size:3
Alignment explanation
Indices: 60130706--60130755 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
60130696 TTATGTTCTG
60130706 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
60130754 AT
1 AT
60130756 AGTATTCCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:60134572 original size:16 final size:16
Alignment explanation
Indices: 60134551--60134594 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
60134541 AATAATGGAA
60134551 ATATATAAAAATATGT
1 ATATATAAAAATATGT
*
60134567 ATATATAAAAGTATGT
1 ATATATAAAAATATGT
*
60134583 ATATATATAAAT
1 ATATATAAAAAT
60134595 TAAAGAGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (16 bp):
ATATATAAAAATATGT
Found at i:60134572 original size:18 final size:17
Alignment explanation
Indices: 60134527--60134593 Score: 68
Period size: 16 Copynumber: 3.9 Consensus size: 17
60134517 AAAGATATAT
60134527 ATATGA-AT-TATAAAA
1 ATATGATATATATAAAA
*
60134542 ATAATGGAAATATATAAAA
1 AT-AT-GATATATATAAAA
60134561 ATATG-TATATATAAAA
1 ATATGATATATATAAAA
*
60134577 GTATGTATATATATAAA
1 ATATG-ATATATATAAA
60134594 TTAAAGAGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
15 2 0.05
16 16 0.36
17 3 0.07
18 14 0.32
19 9 0.20
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (17 bp):
ATATGATATATATAAAA
Found at i:60134674 original size:14 final size:14
Alignment explanation
Indices: 60134651--60134736 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
60134641 GAAAATTAAG
*
60134651 AATATGTATATAAA
1 AATATATATATAAA
* **
60134665 TATATATATATGTA
1 AATATATATATAAA
* *
60134679 TATATATGGTATAGAA
1 AATATAT-ATATA-AA
*
60134695 AACATATATATAAA
1 AATATATATATAAA
*
60134709 AATACATATATAAA
1 AATATATATATAAA
*
60134723 GAAGTATAGATATA
1 -AA-TATATATATA
60134737 TAAGAAAATA
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
14 31 0.57
15 9 0.17
16 14 0.26
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.35
Consensus pattern (14 bp):
AATATATATATAAA
Found at i:60142958 original size:21 final size:21
Alignment explanation
Indices: 60142933--60142972 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
60142923 CGACTTTTCC
*
60142933 CTATCC-GAAGTCACTTTCAAT
1 CTATCCTGAA-TCAATTTCAAT
60142954 CTATCCTGAATCAATTTCA
1 CTATCCTGAATCAATTTCA
60142973 TTTTACCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (21 bp):
CTATCCTGAATCAATTTCAAT
Found at i:60143431 original size:12 final size:12
Alignment explanation
Indices: 60143414--60143451 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
60143404 TCATTTAATA
60143414 ATCAAGTCTTTC
1 ATCAAGTCTTTC
60143426 ATCAAGT-TTTC
1 ATCAAGTCTTTC
60143437 AATCAAG-CTTTC
1 -ATCAAGTCTTTC
60143449 ATC
1 ATC
60143452 TTCTAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.29
12 17 0.71
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (12 bp):
ATCAAGTCTTTC
Found at i:60143627 original size:15 final size:17
Alignment explanation
Indices: 60143602--60143633 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60143592 ATTCAACCCT
60143602 CTCCAAATATG-CTCAA
1 CTCCAAATATGCCTCAA
60143618 CTCC-AATATGCCTCAA
1 CTCCAAATATGCCTCAA
60143634 ACTTTAGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.34, C:0.34, G:0.06, T:0.25
Consensus pattern (17 bp):
CTCCAAATATGCCTCAA
Found at i:60151403 original size:12 final size:12
Alignment explanation
Indices: 60151386--60151423 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
60151376 TCATTCAATA
60151386 ATCAAGTCTTTC
1 ATCAAGTCTTTC
60151398 ATCAAGT-TTTC
1 ATCAAGTCTTTC
60151409 AATCAAG-CTTTC
1 -ATCAAGTCTTTC
60151421 ATC
1 ATC
60151424 TTCTAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.29
12 17 0.71
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (12 bp):
ATCAAGTCTTTC
Found at i:60158758 original size:85 final size:85
Alignment explanation
Indices: 60158558--60158779 Score: 231
Period size: 85 Copynumber: 2.6 Consensus size: 85
60158548 TACATTGGGA
* *
60158558 AGATAAAATTTGTCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCCAAAATCTTCA
1 AGATAAGATTTGT-GTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA-CCAAAA-CTGCA
**
60158623 ACCTACTCTACTGCTGCTCAGAG
63 ACCTACTCTACTGCAACTCAGAG
* * ***
60158646 AGATAATG-TTT-T-TCTTCTG-TCTACTCCACTACTGCTTAGGGAGATAAGA-CTGGA-TGCAA
1 AGATAA-GATTTGTGTCTTC-GATCTGCTCCACTATTGCTTAGGGAGATAAGACCAAAACTGCAA
* *
60158705 TCTGCTCTACTGCAACTTCAGAG
64 CCTACTCTACTGCAAC-TCAGAG
*
60158728 AGATAAGATTTGTGGTTTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
1 AGATAAGATTTGT-GTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
60158780 TCGGTTTCTT
Statistics
Matches: 112, Mismatches: 14, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
81 17 0.15
82 15 0.13
83 3 0.03
84 1 0.01
85 65 0.58
86 1 0.01
87 1 0.01
88 9 0.08
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (85 bp):
AGATAAGATTTGTGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGACCAAAACTGCAACC
TACTCTACTGCAACTCAGAG
Found at i:60158827 original size:128 final size:128
Alignment explanation
Indices: 60158656--60158907 Score: 414
Period size: 128 Copynumber: 2.0 Consensus size: 128
60158646 AGATAATGTT
*
60158656 TTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAAC
1 TTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCAATCTGCTCTACTACAAC
* * * *
60158721 TTCAGAGAGATAAGATTTGTGGTTTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCGG
66 TTCAGAGAGATAAGATCTGTGGTTTTCAATCTGCTCCACTACTGCTTAGGGAAATAAGATCGG
* * * * *
60158784 TTTCTTTTGTCTGCTCCACTACTTCTTAGGGAGATAAGACTGGATGCGATTTGCTCTACTACAAC
1 TTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCAATCTGCTCTACTACAAC
60158849 TTCAGAGAGATAAGATCTGTGGTTTTCAATCTGCTCCACTACTGCTTAGGGAAATAAGA
66 TTCAGAGAGATAAGATCTGTGGTTTTCAATCTGCTCCACTACTGCTTAGGGAAATAAGA
60158908 CTTGATGTGA
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 114 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (128 bp):
TTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCAATCTGCTCTACTACAAC
TTCAGAGAGATAAGATCTGTGGTTTTCAATCTGCTCCACTACTGCTTAGGGAAATAAGATCGG
Found at i:60158886 original size:85 final size:85
Alignment explanation
Indices: 60158793--60158956 Score: 265
Period size: 85 Copynumber: 1.9 Consensus size: 85
60158783 GTTTCTTTTG
* * *
60158793 TCTGCTCCACTACTTCTTAGGGAGATAAGACTGGATGCGATTTGCTCTACTACAACTTCAGAGAG
1 TCTGCTCCACTACTGCTTAGGGAAATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAG
60158858 ATAAGATCTGTGGTTTTCAA
66 ATAAGATCTGTGGTTTTCAA
* * *
60158878 TCTGCTCCACTACTGCTTAGGGAAATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAG
1 TCTGCTCCACTACTGCTTAGGGAAATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAG
*
60158943 ATAAGATTTGTGGT
66 ATAAGATCTGTGGT
60158957 GTATAGCTTC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (85 bp):
TCTGCTCCACTACTGCTTAGGGAAATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAG
ATAAGATCTGTGGTTTTCAA
Found at i:60159052 original size:50 final size:50
Alignment explanation
Indices: 60158996--60159748 Score: 185
Period size: 50 Copynumber: 15.0 Consensus size: 50
60158986 GTCGGGGAAC
**
60158996 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * * * * * ** * *
60159046 AGGATTCACCGTTGTGGCTTCAATAT-TTCAAATTGCAATATCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTC-CACTGCACTGCCAGGGAAGT
* * ** * * *
60159096 AAGATTCGCCGTCGTAGCTTTAATCTACTCCACTGTACTGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * ** * * ** * * * *
60159146 AAGATTCGTCATTGCGGCTTCAGTCTTTTTAATTGCAATGTCGGGGAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * * *
60159196 AAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCACTGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * ** * * * * *
60159246 AAGATTCGTCGTTCCG-A-CTTCAATATTTTATATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTT--GTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * * * * * * * *
60159296 AAAATTCGCTGTTGTAACTTTAATCTGCTCTACTACACCGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
** * * ** * * * * *
60159346 AAGATTCGCCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * ** * * * *
60159396 AAGTTTCACTATTGTAGCTTTAATCTGCTCCACTGCACTGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
** * * ** * * * * *
60159446 AAGATTCTTCGTTCCG-A-CTTCAATATTTTATATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTT--GTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * * * * * *
60159496 AAGATTTGCTGTTGTAACTTTAATCTGCTCCACTACACCGCTA-GGATAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGA-AGT
** * ** * * * *
60159546 AAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC-GAGGAAGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAG-GGAAGT
* ** * * * * *
60159596 AAGATTCACTATTATAGCTTTAATCTGCTCCACTGCACCG-CTGGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG-AAGT
* * * ** * * * * * *
60159646 AAGATTCGTCGTTG-CGACTTCAATCTTTTAAATTGTAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAG-CTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
* * * **
60159696 AAGATTCACTGTTGTAGCTTTAATCTGCCCCACTGCA-TCGCCAGGGAATGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACT-GCCAGGGAA-GT
60159747 AA
1 AA
60159749 CTTCATTGAT
Statistics
Matches: 447, Mismatches: 236, Indels: 39
0.62 0.33 0.05
Matches are distributed among these distances:
48 2 0.00
49 13 0.03
50 415 0.93
51 15 0.03
52 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
Found at i:60159100 original size:100 final size:100
Alignment explanation
Indices: 60158962--60159732 Score: 1022
Period size: 100 Copynumber: 7.7 Consensus size: 100
60158952 GTGGTGTATA
* * * * *
60158962 GCTTCAATCCTTTTAAACTGCAATGTCGGGGAA-CAAGATTCGTTGTTGTAGCTTCAATCTGTTC
1 GCTTCAAT-ATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTC
* * * ** *
60159026 CACTGCACTGCCAGGGAAGTAGGATTCACCGTTGTG
65 CACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * * *
60159062 GCTTCAATATTTCAAATTGCAATATCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTACTCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
* *
60159127 ACTGTACTGCTAGGAAAGTAAGATTCGTCATTGCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * *
60159162 GCTTCAGTCTTTTTAATTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
*
60159227 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTCCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * * *
60159262 ACTTCAATATTTTATATTGCAATGTCGGGGAAGCAAAATTCGCTGTTGTAACTTTAATCTGCTCT
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
* * *
60159327 ACTACACCGCTAGGAAAGTAAGATTCGCCGTTGCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * *
60159362 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGTTTCACTATTGTAGCTTTAATCTGCTCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
* *
60159427 ACTGCACTGCTAGGAAAGTAAGATTCTTCGTTCCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * *
60159462 ACTTCAATATTTTATATTGCAATGTCGGGGAAGCAAGATTTGCTGTTGTAACTTTAATCTGCTCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
* * * *
60159527 ACTACACCGCTAGGATAGTAAGATTCGCCGTTGCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * * *
60159562 GCTTCAATCTTTTAAATTGCAATGTCGAGGAAGCAAGATTCACTATTATAGCTTTAATCTGCTCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
* *
60159627 ACTGCACCGCTGGGAAAGTAAGATTCGTCGTTGCG
66 ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
* * * * *
60159662 ACTTCAATCTTTTAAATTGTAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGCCCC
1 GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
60159727 ACTGCA
66 ACTGCA
60159733 TCGCCAGGGA
Statistics
Matches: 582, Mismatches: 88, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
99 20 0.03
100 562 0.97
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
GCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
ACTGCACTGCTAGGAAAGTAAGATTCGTCGTTGCG
Found at i:60160079 original size:24 final size:24
Alignment explanation
Indices: 60160028--60160081 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
60160018 TTGCCCCCAT
**
60160028 TGTAATCTTCAAAGTTCAATCCGT
1 TGTAATCTTCAAAGTTCAATCCAC
* * *
60160052 TGTAATCTTCAAGGTTGAGTCCAC
1 TGTAATCTTCAAAGTTCAATCCAC
60160076 TGTAAT
1 TGTAAT
60160082 TTAGGGACAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (24 bp):
TGTAATCTTCAAAGTTCAATCCAC
Found at i:60161000 original size:18 final size:16
Alignment explanation
Indices: 60160979--60161028 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 16
60160969 CATTGGCCTC
60160979 TCTTTTTTCTTTTTTTGT
1 TCTTTTTT-TTTTTTT-T
60160997 TCTTCTTTTTTTTCTTTT
1 TCTT-TTTTTTTT-TTTT
60161015 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
60161029 GAAGTGAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.07
17 8 0.27
18 13 0.43
19 7 0.23
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (16 bp):
TCTTTTTTTTTTTTTT
Found at i:60161008 original size:15 final size:15
Alignment explanation
Indices: 60160988--60161024 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
60160978 CTCTTTTTTC
*
60160988 TTTTTTTGTTCTTCT
1 TTTTTTTCTTCTTCT
*
60161003 TTTTTTTCTTTTTCT
1 TTTTTTTCTTCTTCT
60161018 TTTTTTT
1 TTTTTTT
60161025 TTTTGAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (15 bp):
TTTTTTTCTTCTTCT
Found at i:60164130 original size:19 final size:19
Alignment explanation
Indices: 60164106--60164151 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
60164096 GTAGAAATCT
* *
60164106 AATGCATATG-ATGCAATG
1 AATGCAAATGCATGAAATG
60164124 AAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
60164144 AATGCAAA
1 AATGCAAA
60164152 AAGAGACGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.22
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:60170498 original size:38 final size:38
Alignment explanation
Indices: 60170451--60170529 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
60170441 GAGAAGGGGA
*
60170451 TTGACACCTCGACTTAAGGGTGGCGGT-AAGGGAGTTGG
1 TTGACACCTCGACTCAAGGGTGGCGGTAAAGGG-GTTGG
* * * *
60170489 TTGAGACCTCGGCTCAGGGGTGGTGGTAAAGGGGTTGG
1 TTGACACCTCGACTCAAGGGTGGCGGTAAAGGGGTTGG
60170527 TTG
1 TTG
60170530 GGGCTTCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 30 0.86
39 5 0.14
ACGTcount: A:0.18, C:0.14, G:0.43, T:0.25
Consensus pattern (38 bp):
TTGACACCTCGACTCAAGGGTGGCGGTAAAGGGGTTGG
Found at i:60171168 original size:13 final size:13
Alignment explanation
Indices: 60171152--60171191 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
60171142 TTTTTCTGCA
60171152 TTTTTAAATTTAT
1 TTTTTAAATTTAT
* *
60171165 TTTTTAATTTTAA
1 TTTTTAAATTTAT
*
60171178 ATTTTAAATTTAT
1 TTTTTAAATTTAT
60171191 T
1 T
60171192 CAATAATACT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTAAATTTAT
Found at i:60172086 original size:15 final size:14
Alignment explanation
Indices: 60172065--60172097 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60172055 TGATTTTTAA
60172065 TTTTAAAAAAATAT
1 TTTTAAAAAAATAT
60172079 TGTTT-AAAAAATAT
1 T-TTTAAAAAAATAT
60172093 TTTTA
1 TTTTA
60172098 TAACTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.18
14 11 0.65
15 3 0.18
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TTTTAAAAAAATAT
Found at i:60172466 original size:30 final size:33
Alignment explanation
Indices: 60172406--60172471 Score: 93
Period size: 30 Copynumber: 2.1 Consensus size: 33
60172396 ACATGATTTT
*
60172406 TTTAAATAATTATAAAAATATTATAGAAAATTA
1 TTTAAATAACTATAAAAATATTATAGAAAATTA
*
60172439 TTTAAA-AACTATTAAAAT-TTA-AGAAAATTA
1 TTTAAATAACTATAAAAATATTATAGAAAATTA
60172469 TTT
1 TTT
60172472 GATACACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 12 0.39
31 3 0.10
32 10 0.32
33 6 0.19
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (33 bp):
TTTAAATAACTATAAAAATATTATAGAAAATTA
Found at i:60174766 original size:9 final size:9
Alignment explanation
Indices: 60174749--60174785 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
60174739 TGAGTTCTCG
60174749 AATTCGAAT
1 AATTCGAAT
*
60174758 AACTCGAAT
1 AATTCGAAT
60174767 AATTCGAAT
1 AATTCGAAT
60174776 AATTCGAAT
1 AATTCGAAT
60174785 A
1 A
60174786 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:60183104 original size:3 final size:3
Alignment explanation
Indices: 60183082--60183131 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
60183072 TTTAATAAAA
* *
60183082 ATT ATT ATA ATA ATT A-T ATT ATT ATT ATT ATT AATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
60183127 ATT AT
1 ATT AT
60183132 AAAAGGGGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 38 0.88
4 3 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:60185070 original size:26 final size:26
Alignment explanation
Indices: 60185041--60185091 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
60185031 TAATCCTACT
* *
60185041 TTATTATATATTTTATTTATTTCAAA
1 TTATTATATATATTATTTATATCAAA
60185067 TTATTATATATATTATTTATATCAA
1 TTATTATATATATTATTTATATCAA
60185092 GTTGTTCGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (26 bp):
TTATTATATATATTATTTATATCAAA
Found at i:60197853 original size:41 final size:41
Alignment explanation
Indices: 60197792--60198425 Score: 133
Period size: 44 Copynumber: 14.5 Consensus size: 41
60197782 AAATAAAGGA
* *
60197792 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGAATCAGG
* * * *
60197833 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAGA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATC---GAA-T-CAGG
* *** * * * *
60197879 TCTTATTTCCCTGAGATTACAACGGAGCAGATTGAAGCCAGTAA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAA-TCAG--G
* * * ** ** *
60197923 TCCTATTTCCCTAAGATTACAGTAGAACAGATTAAAATAAAGG
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGA-TCGAAT-CAGG
* * * *
60197966 ATCTTATCTCTCTAAAATTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATCAGG
* * * * *
60198008 TCTTATCTCCCTGATATTACAGTGGAATAGACCGAAGAATTACAGA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATC---GAA-T-CAGG
* * ** * * * *
60198054 TTTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAA-TCAG--G
* * * *** ** *
60198098 TCCTAT-TTCCTCGAGATTACAATAGAACGGATTAAAATAAAGG
1 TCTTATCTCCCT-GAGATTACAGTAGAGTAGA-TCGAAT-CAGG
* * *
60198141 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATTAGG
1 -TCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGAATCAGG
* * ** ** *
60198183 TCTTATCTCTCTGAGATTACAGTGGAACAGACTAAAAAATTACAGA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGA-T--CGAA-T-CAGG
* ** * * * *
60198229 TCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATC-AG--G
* * * * *** ** *
60198273 TCCTATTTCCCTGATATTACAGTGGAACGGATTAAAATAAAGG
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGA-TCGAAT-CAGG
* *
60198316 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGAATCAGG
* * *
60198358 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAGG
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATC---GAA-T-CAGG
*
60198404 TATTATCTCCCTGAGATTACAG
1 TCTTATCTCCCTGAGATTACAG
60198426 CGGAGCAGAT
Statistics
Matches: 427, Mismatches: 123, Indels: 81
0.68 0.19 0.13
Matches are distributed among these distances:
41 108 0.25
42 21 0.05
43 23 0.05
44 141 0.33
45 23 0.05
46 111 0.26
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (41 bp):
TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATCAGG
Found at i:60198471 original size:175 final size:175
Alignment explanation
Indices: 60197703--60198474 Score: 1240
Period size: 175 Copynumber: 4.4 Consensus size: 175
60197693 AAGATGGTGA
** *
60197703 ATCTTATCTCCCTGAGATTACAATGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
*
60197768 AGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
60197833 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
* * *
60197878 ATCTTATTTCCCTGAGATTACAACGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
* * *
60197943 AGTAGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
60198008 TCTTATCTCCCTGATATTACAGTGGAATAGACCGAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
* *
60198053 ATTTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTT-CCTCGAGATTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-GAGATTA
* * * * *
60198117 CAATAGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATTAG
65 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
60198182 GTCTTATCTCTCTGAGATTACAGTGGAACAGACTAAAAAATTACAG
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
* * *
60198228 ATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGATATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
*
60198293 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
60198358 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
* * * *
60198403 GTATTATCTCCCTGAGATTACAGCGGAGCAGATTGAAACCAGTAATCCTATTTCTCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
60198468 AGTGGAA
66 AGTGGAA
60198475 TAGACCGAAG
Statistics
Matches: 549, Mismatches: 46, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
174 3 0.01
175 543 0.99
176 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTACAG
Found at i:60198532 original size:90 final size:90
Alignment explanation
Indices: 60198368--60198533 Score: 192
Period size: 90 Copynumber: 1.8 Consensus size: 90
60198358 TCTTATCTCC
** *
60198368 CTGAGATTACAGTGGAATAGACCAAAGAATTACAGGTATTATCTCCCTGAGATTACAGCGGAGCA
1 CTGAGATTACAGTGGAATAGACCAAAGAATTACAAATATTATCTCCCTGAGATTACAGCGGAACA
* *
60198433 GATTGAAACCAGTAATCCTATTTCT
66 GAGTAAAACCAGTAATCCTATTTCT
* ** * * * *
60198458 CTGAGATTACAGTGGAATAGACCGAAGAATTTTAAATATTA-CTTCCTAGGCGA-TGCAGTGGAA
1 CTGAGATTACAGTGGAATAGACCAAAGAATTACAAATATTATCTCCCT--GAGATTACAGCGGAA
60198521 CAGAGTAAAACCA
64 CAGAGTAAAACCA
60198534 CATCGGTGAA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
89 5 0.08
90 54 0.87
91 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (90 bp):
CTGAGATTACAGTGGAATAGACCAAAGAATTACAAATATTATCTCCCTGAGATTACAGCGGAACA
GAGTAAAACCAGTAATCCTATTTCT
Found at i:60198565 original size:50 final size:50
Alignment explanation
Indices: 60198511--60199138 Score: 439
Period size: 50 Copynumber: 12.6 Consensus size: 50
60198501 TCCTAGGCGA
* *
60198511 TGCAGTGGAACAGAGTAAAACCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
** * * * * * * * * **
60198561 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* *
60198611 TGCAGTGGAACATATTAAAGCCACATCGATGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* ** * * * * * * * * **
60198661 TACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
*
60198711 TGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
** * * * * * * * * **
60198761 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* *
60198811 TGCAGTGGAACAGATTAAAGTCATATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
** * * * * ** * * ** ***
60198861 TGCAGTTAAAAAGATTAAAGCTACAACAGCAAATTTTACTTCCTAGATGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* * * *
60198911 TACAGTGGAACATATTAAAGTCACATCGGTGAATCTTGCTTCCTCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* ** * * * * * * * * **
60198961 TACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
60199011 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
** * * * * * * * * **
60199061 TGCAGTTAAAAAGATTAAA-CCTATAACAGCGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAACAGATTAAAGCC-ACATCGGTGAATCTTGCTTCCCCGACAT
*
60199111 TGCCGTGGAACAGATTAAAGCCACATCG
1 TGCAGTGGAACAGATTAAAGCCACATCG
60199139 TAGAACAGAT
Statistics
Matches: 411, Mismatches: 165, Indels: 4
0.71 0.28 0.01
Matches are distributed among these distances:
49 2 0.00
50 407 0.99
51 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
Found at i:60198669 original size:100 final size:100
Alignment explanation
Indices: 60198496--60199138 Score: 1079
Period size: 100 Copynumber: 6.4 Consensus size: 100
60198486 ATTTTAAATA
* * * *
60198496 TTACTTCCTAGGCGATGCAGTGGAACAGAGTAAAACCACATCGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
60198561 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* *
60198596 TTACTTCCCAGGCGGTGCAGTGGAACATATTAAAGCCACATCGATGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
*
60198661 TACAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
*
60198696 TTACTTCCCAGGCGGTGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
60198761 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* *
60198796 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGTCATATCGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* *
60198861 TGCAGTTAAAAAGATTAAAGCTACAACAGCAAATT
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* ** * * * *
60198896 TTACTTCCTAGATGGTACAGTGGAACATATTAAAGTCACATCGGTGAATCTTGCTTCCTCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
*
60198961 TACAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
60198996 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* *
60199061 TGCAGTTAAAAAGATTAAACCTATAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
*
60199096 TTACTTCCCAGGCGGTGCCGTGGAACAGATTAAAGCCACATCG
1 TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCG
60199139 TAGAACAGAT
Statistics
Matches: 508, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 508 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (100 bp):
TTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
Found at i:60199953 original size:15 final size:17
Alignment explanation
Indices: 60199933--60199969 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
60199923 ACACACACAC
*
60199933 AAAAAAAT-CAA-TGCA
1 AAAAAAATACAACAGCA
60199948 AAAAAAATACAACAGCA
1 AAAAAAATACAACAGCA
60199965 AAAAA
1 AAAAA
60199970 TCAAAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 3 0.16
17 8 0.42
ACGTcount: A:0.73, C:0.14, G:0.05, T:0.08
Consensus pattern (17 bp):
AAAAAAATACAACAGCA
Found at i:60202901 original size:20 final size:22
Alignment explanation
Indices: 60202872--60202912 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
60202862 CACGTTCTCC
*
60202872 TTTTGTTA-TTTATTTCTTTTT
1 TTTTGTTATTTTATTCCTTTTT
60202893 TTTTG-TATTTTATTCCTTTT
1 TTTTGTTATTTTATTCCTTTT
60202913 CTTTCCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.78
Consensus pattern (22 bp):
TTTTGTTATTTTATTCCTTTTT
Found at i:60208653 original size:15 final size:15
Alignment explanation
Indices: 60208633--60208663 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
60208623 AATAGAACGA
60208633 AATTTCTATTCATTT
1 AATTTCTATTCATTT
60208648 AATTTCTATTCATTT
1 AATTTCTATTCATTT
60208663 A
1 A
60208664 CGTACCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (15 bp):
AATTTCTATTCATTT
Found at i:60210744 original size:51 final size:50
Alignment explanation
Indices: 60210656--60210960 Score: 245
Period size: 50 Copynumber: 5.8 Consensus size: 50
60210646 TATAATAACA
* * * *
60210656 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGAT-CTCTCATATCGG
** *
60210707 TGTCC-ATGCCATGTCCCAGACATGGTCTTATGGGGGATCTCTCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCTCATATCGG
* * *
60210757 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTC-TCGGTGCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA--TCTC-TCAT--AT--CGG
* * * * *
60210813 TGCCAATGCCATGTCCCAGACATGGTCTTACACGAGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCTCATATCGG
* * * * *
60210863 TGCCAACGCCATGTCCCAGACATGGTTTTTCATGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCTCAT-ATC----GG
* * * *
60210918 ATGCCAATTCCATGTCCCAGACATGGTTTTACATGGGACCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCT
60210961 TTACCCAAAT
Statistics
Matches: 210, Mismatches: 28, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
49 2 0.01
50 82 0.39
51 31 0.15
52 8 0.04
53 4 0.02
54 5 0.02
55 2 0.01
56 76 0.36
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCTCATATCGG
Found at i:60210819 original size:56 final size:52
Alignment explanation
Indices: 60210656--60210960 Score: 277
Period size: 56 Copynumber: 5.8 Consensus size: 52
60210646 TATAATAACA
* * ** *
60210656 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGT-TC-TCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTC-TCTCGG
***
60210707 TGTCC-ATGCCATGTCCCAGACATGGTCTT--ATGGGGGATCTC-TCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTC-TCTCGG
*
60210757 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTCGGTGCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTC--T--CGG
* * *
60210813 TGCCAATGCCATGTCCCAGACATGGTCTTACACGAGACCTCTCATCT-T-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTCTCGG
* * * *
60210863 TGCCAACGCCATGTCCCAGACATGGTTTTTCATGGGACCTCTCATGATCT-TAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-T--TCTCT-CGG
* *
60210918 ATGCCAATTCCATGTCCCAGACATGGTTTTACATGGGACCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
60210961 TTACCCAAAT
Statistics
Matches: 215, Mismatches: 23, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
49 8 0.04
50 75 0.35
51 24 0.11
52 13 0.06
53 7 0.03
54 1 0.00
55 2 0.01
56 85 0.40
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTCTCGG
Found at i:60210923 original size:106 final size:105
Alignment explanation
Indices: 60210656--60210960 Score: 309
Period size: 106 Copynumber: 2.9 Consensus size: 105
60210646 TATAATAACA
* * ** *
60210656 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCAT-ATCG-G--TGT-CC-ATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTC-TGATCGTGAAGGTGCCAATG
*** *
60210715 CCATGTCCCAGACATGGTCTTATGGGGGATCTCTCATCTCGG
64 CCATGTCCCAGACATGGTCTTACACGGGACCTCTCATCTCGG
** ** **
60210757 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTCGGTGCCGGTGCCAATGC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTGATC-GTGAAGGTGCCAATGC
* *
60210822 CATGTCCCAGACATGGTCTTACACGAGACCTCTCATCTTGG
65 CATGTCCCAGACATGGTCTTACACGGGACCTCTCATCTCGG
* * * *
60210863 TGCCAACGCCATGTCCCAGACATGGTTTTTCATGGGACCTCTCATGATC-TTAAGGATGCCAATT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-TGATCGTGAAGG-TGCCAATG
* *
60210927 CCATGTCCCAGACATGGTTTTACATGGGACCTCT
64 CCATGTCCCAGACATGGTCTTACACGGGACCTCT
60210961 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 26, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
99 1 0.01
100 6 0.04
101 35 0.21
102 1 0.01
104 2 0.01
105 5 0.03
106 116 0.69
107 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (105 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTGATCGTGAAGGTGCCAATGCC
ATGTCCCAGACATGGTCTTACACGGGACCTCTCATCTCGG
Found at i:60227824 original size:18 final size:18
Alignment explanation
Indices: 60227790--60227824 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60227780 TATTGAAAAT
*
60227790 GGAAGTGGAGAGAGAAAG
1 GGAAGTGGAAAGAGAAAG
*
60227808 GGAAGTGGAAAGGGAAA
1 GGAAGTGGAAAGAGAAA
60227825 TACAAAGGCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.49, T:0.06
Consensus pattern (18 bp):
GGAAGTGGAAAGAGAAAG
Found at i:60228835 original size:20 final size:20
Alignment explanation
Indices: 60228786--60228837 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
60228776 CTAGAGTTTT
60228786 AAGAAGAAAAA-G--GGAAA
1 AAGAAGAAAAAGGAAGGAAA
* * *
60228803 AAAAAGTAGAAGGAAGGAAA
1 AAGAAGAAAAAGGAAGGAAA
60228823 AAGAAGAAAAAGGAA
1 AAGAAGAAAAAGGAA
60228838 AAATAAAAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
17 8 0.31
18 1 0.04
20 17 0.65
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (20 bp):
AAGAAGAAAAAGGAAGGAAA
Found at i:60229173 original size:25 final size:24
Alignment explanation
Indices: 60229137--60229196 Score: 86
Period size: 25 Copynumber: 2.5 Consensus size: 24
60229127 TGACCCAGCC
*
60229137 CAGCAGGC-CAGCCCAGCGCTCAG
1 CAGCAGGCTCAGCCCAGCGCCCAG
*
60229160 CAGCAGGCCTCAGCCCAGTGCCCAG
1 CAGCAGG-CTCAGCCCAGCGCCCAG
60229185 CAGCAGGCTCAG
1 CAGCAGGCTCAG
60229197 AAGCACCCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 7 0.21
24 6 0.18
25 20 0.61
ACGTcount: A:0.22, C:0.42, G:0.30, T:0.07
Consensus pattern (24 bp):
CAGCAGGCTCAGCCCAGCGCCCAG
Found at i:60243333 original size:23 final size:23
Alignment explanation
Indices: 60243303--60243376 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
60243293 AAGTGCAACT
60243303 CTGATATGTAGCCGAAGCTACCA
1 CTGATATGTAGCCGAAGCTACCA
*
60243326 CTGTTATGTAGCCGAAGCTACCA
1 CTGATATGTAGCCGAAGCTACCA
* *
60243349 CTGAAACGTAGCCGAAGCTACCA
1 CTGATATGTAGCCGAAGCTACCA
60243372 CTGAT
1 CTGAT
60243377 CAATAACACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (23 bp):
CTGATATGTAGCCGAAGCTACCA
Found at i:60250433 original size:35 final size:35
Alignment explanation
Indices: 60250383--60250460 Score: 138
Period size: 35 Copynumber: 2.2 Consensus size: 35
60250373 TAATATTTCG
*
60250383 ACAGCCTCGTAATCTAGAGAGCCCAACTCAAATTA
1 ACAGCCTCGCAATCTAGAGAGCCCAACTCAAATTA
*
60250418 ACATCCTCGCAATCTAGAGAGCCCAACTCAAATTA
1 ACAGCCTCGCAATCTAGAGAGCCCAACTCAAATTA
60250453 ACAGCCTC
1 ACAGCCTC
60250461 AACCACGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (35 bp):
ACAGCCTCGCAATCTAGAGAGCCCAACTCAAATTA
Found at i:60251862 original size:3 final size:3
Alignment explanation
Indices: 60251856--60251900 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
60251846 ACTAATTAGG
* * *
60251856 TTA TTA TTA TTA CTA TTA TTA TCA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60251901 GTAGTAGTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:60252042 original size:14 final size:14
Alignment explanation
Indices: 60252010--60252044 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
60252000 ATTATTATTG
*
60252010 TATAATTACTTATA
1 TATATTTACTTATA
60252024 TATATTTACTTATA
1 TATATTTACTTATA
60252038 TATATTT
1 TATATTT
60252045 TTTATACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (14 bp):
TATATTTACTTATA
Found at i:60264216 original size:24 final size:24
Alignment explanation
Indices: 60264161--60264222 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
60264151 TTTTATGTCC
*
60264161 AAAAATTACAGTGGATTGAAATTT
1 AAAAATTACAGTGGATTGAAACTT
* *
60264185 AAAAATTACAGTGGATTGGACCTT
1 AAAAATTACAGTGGATTGAAACTT
* *
60264209 GAAGATTACAGTGG
1 AAAAATTACAGTGG
60264223 GGGCAATCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAATTACAGTGGATTGAAACTT
Found at i:60264593 original size:45 final size:45
Alignment explanation
Indices: 60264536--60264981 Score: 597
Period size: 45 Copynumber: 9.9 Consensus size: 45
60264526 GAAGAATATT
*
60264536 GCAGATCTTGTCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* *
60264581 GCAGATCTTGTCTTCCTATATAGGCAGCGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * * *
60264626 GCAAATCTTGTCTTCCTGTATTGGCAGTGATGTAGATCGAATATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * *
60264671 GTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTATATCAAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * *
60264716 GCAGGTCTTGTCTTCCTGTATTGGTAGCAAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * *
60264761 ACA-AGTCTTGTCTTCCTATATTGGCAGCGAAGTAGACCGAAGATA
1 GCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * * *
60264806 GCAAATCTTGTCTTCTTGCATTGGCAGAGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* *
60264851 GCAGATCTTGTCTTCTTGTATTGGCAGCGAAGTAGATCAAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * * * *
60264896 ACAGGTTTTGTCTTCTTGTATTGGCAACGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
* * * *
60264941 GCAGATCTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAA
1 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
60264982 AACACCAACC
Statistics
Matches: 347, Mismatches: 52, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 346 1.00
46 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATA
Found at i:60265045 original size:88 final size:88
Alignment explanation
Indices: 60264919--60265123 Score: 286
Period size: 88 Copynumber: 2.3 Consensus size: 88
60264909 TCTTGTATTG
* * * * * *
60264919 GCAACGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAAAA
1 GCAACGGAGTAGGTTGAAGATTGTAGATCTTGTCTTCCTATACTGGCAGTGAAGCAAATCGAAAA
60264984 CACCA-ACCTTATCTCCCTGAGCA
66 CACCAGACC-TATCTCCCTGAGCA
* * *
60265007 GTAGCGGAGTAGGTTGAAGATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAAATCGAAAA
1 GCAACGGAGTAGGTTGAAGATTGTAGATCTTGTCTTCCTATACTGGCAGTGAAGCAAATCGAAAA
*
60265072 CACCAGTCCTATCTCCCTGAGCA
66 CACCAGACCTATCTCCCTGAGCA
* *
60265095 GCAATGGAGTAGGTTGAAGATTGTGGATC
1 GCAACGGAGTAGGTTGAAGATTGTAGATC
60265124 CTGCCTCCCT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 100 0.98
89 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (88 bp):
GCAACGGAGTAGGTTGAAGATTGTAGATCTTGTCTTCCTATACTGGCAGTGAAGCAAATCGAAAA
CACCAGACCTATCTCCCTGAGCA
Found at i:60265409 original size:51 final size:51
Alignment explanation
Indices: 60265267--60265409 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
60265257 AAGCGAAACG
* * * *
60265267 GATTAAAGCTGAAGGCAGCGAATCCTACCTTCTTGGCGTTACAGTGGAACA
1 GATTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGCATTACAGTGGAACA
* * * * * * *
60265318 GATTAAAGCTAAAAGTAGCGAATCTTGTTTTCC-TGACATTACAGTGGAGCA
1 GATTAAAGCTGAAGGCAGCGAATCTT-ATCTCCTTGGCATTACAGTGGAACA
*
60265369 GATTAAAGCTGAAGGCAGCGAATCTTATGTCCTTGGCATTA
1 GATTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGCATTA
60265410 AAGTTGAAGA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
50 4 0.05
51 67 0.92
52 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (51 bp):
GATTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGCATTACAGTGGAACA
Found at i:60265527 original size:45 final size:44
Alignment explanation
Indices: 60265468--60265727 Score: 174
Period size: 45 Copynumber: 5.9 Consensus size: 44
60265458 GAAGATGGCA
* * *
60265468 AATCATATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* * * *
60265512 AAGTCTTATCTCCCTGAAGTTACAGAGGAGCAGACT-GA-CTAAAACC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT--AA-C
* * * *
60265558 AATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTATA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AC
* * * * * *
60265602 AAT-TACAGACTCTCTGAAGTTGCAATAGAGCAGGTTGAAA--TAAC
1 AATCT-TA-TCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTAAC
* * * **
60265646 AAAT-TTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGCTATT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* *
60265690 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
60265728 ATTATGAAAT
Statistics
Matches: 161, Mismatches: 40, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
42 2 0.01
43 27 0.17
44 41 0.25
45 82 0.51
46 7 0.04
47 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
Found at i:60267297 original size:3 final size:3
Alignment explanation
Indices: 60267279--60267377 Score: 58
Period size: 3 Copynumber: 32.7 Consensus size: 3
60267269 ATCCTTTTTC
* * * *
60267279 TAT TGT TAT T-T TAT TAT TAT TA- AACT AAT TAGT TTAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA-T T-AT TAT TAT TAT
* * * * * *
60267325 TAT TAT CAT CAT CAT CAT CAT TAT TAT TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
60267373 CAT TA
1 TAT TA
60267378 CATTTCCATT
Statistics
Matches: 79, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
2 3 0.04
3 69 0.87
4 6 0.08
5 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:60267706 original size:18 final size:19
Alignment explanation
Indices: 60267667--60267756 Score: 57
Period size: 18 Copynumber: 5.0 Consensus size: 19
60267657 ATATATATAC
*
60267667 ATACTTATATATATTTTTT
1 ATACTTATATATATTTTAT
60267686 ATACTT-TATA-ATTTTAAT
1 ATACTTATATATATTTT-AT
* * ** *
60267704 ATACATATATACA-TACAC
1 ATACTTATATATATTTTAT
*
60267722 ATACTTATATATCTTTT-T
1 ATACTTATATATATTTTAT
*
60267740 ATA-TTTTATA-ATTTTAT
1 ATACTTATATATATTTTAT
60267757 TCATTTTCTT
Statistics
Matches: 53, Mismatches: 13, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
16 4 0.08
17 12 0.23
18 24 0.45
19 12 0.23
20 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (19 bp):
ATACTTATATATATTTTAT
Found at i:60270346 original size:14 final size:16
Alignment explanation
Indices: 60270306--60270349 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
60270296 TTTTCAACAT
*
60270306 AAATTAAACTGAATTCA
1 AAATTAAA-TAAATTCA
60270323 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
60270338 AAA-TAAATAAAT
1 AAATTAAATAAAT
60270350 ATGAGTTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:60271658 original size:25 final size:28
Alignment explanation
Indices: 60271621--60271677 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
60271611 ATTTCTAACT
*
60271621 TATACATGCA-TT-TTTATATAGTATATA
1 TATACAT-CATTTCTTTATATAATATATA
60271648 TATACAT-ATTTCTTTATATAATATATA
1 TATACATCATTTCTTTATATAATATATA
60271675 TAT
1 TAT
60271678 GTGTTCTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 1 0.04
26 2 0.07
27 24 0.89
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.51
Consensus pattern (28 bp):
TATACATCATTTCTTTATATAATATATA
Found at i:60272019 original size:28 final size:25
Alignment explanation
Indices: 60271974--60272032 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 25
60271964 TACGTACATA
*
60271974 TATATACCTATATACATACATTTTTTT
1 TATATACATATATACAT--ATTTTTTT
* *
60272001 GTATATACATATTTTCATATTTTTTT
1 -TATATACATATATACATATTTTTTT
60272027 TATATA
1 TATATA
60272033 TTTAACAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 6 0.21
26 8 0.29
28 14 0.50
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATACATATATACATATTTTTTT
Found at i:60279494 original size:27 final size:28
Alignment explanation
Indices: 60279463--60279516 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
60279453 ATTTTTTGTA
*
60279463 ATTTTTATAATTAAAT-TTAAATAAAAT
1 ATTTTAATAATTAAATATTAAATAAAAT
* *
60279490 ATTTTAATCATTAAATATTAATTAAAA
1 ATTTTAATAATTAAATATTAAATAAAA
60279517 ATATAAGCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTTTAATAATTAAATATTAAATAAAAT
Found at i:60283336 original size:10 final size:11
Alignment explanation
Indices: 60283319--60283345 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
60283309 TTTCAGTTTT
60283319 TTTAAAAAAAA
1 TTTAAAAAAAA
60283330 TTTAAAAAAAA
1 TTTAAAAAAAA
60283341 TTTAA
1 TTTAA
60283346 TTTTTGTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TTTAAAAAAAA
Found at i:60293296 original size:26 final size:26
Alignment explanation
Indices: 60293257--60293306 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
60293247 TCTTCATTGT
60293257 TTTTGAAAACTGCTATGGAAAAATGC
1 TTTTGAAAACTGCTATGGAAAAATGC
* * * *
60293283 TTTTGAGAAGTGCTTTTGAAAAAT
1 TTTTGAAAACTGCTATGGAAAAAT
60293307 TCGAGTGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (26 bp):
TTTTGAAAACTGCTATGGAAAAATGC
Found at i:60303963 original size:20 final size:20
Alignment explanation
Indices: 60303903--60303963 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
60303893 CCGAATTATA
*
60303903 TATTAAATATATATGTTTATT
1 TATTAAATATATATATTT-TT
* *
60303924 T-TT-AATCAAATATACTTTT
1 TATTAAAT-ATATATATTTTT
60303943 TATTAAATATATATATTTTT
1 TATTAAATATATATATTTTT
60303963 T
1 T
60303964 GGACTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 6 0.19
20 22 0.69
21 4 0.12
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (20 bp):
TATTAAATATATATATTTTT
Found at i:60318564 original size:38 final size:38
Alignment explanation
Indices: 60318485--60318561 Score: 109
Period size: 38 Copynumber: 1.9 Consensus size: 38
60318475 TAATCTAACC
* *
60318485 TAAAATATTTATTATATTTATTTGTGTTTTTAATATTA
1 TAAAATATTTATTATATTTATTAGTGCTTTTAATATTA
60318523 TAAAATATTTATTATATTTATGATAGTGCTTTTCAATAT
1 TAAAATATTTATTATATTTAT--TAGTGCTTTT-AATAT
60318562 AAATGATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 21 0.62
40 8 0.24
41 5 0.15
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (38 bp):
TAAAATATTTATTATATTTATTAGTGCTTTTAATATTA
Found at i:60325668 original size:31 final size:31
Alignment explanation
Indices: 60325607--60325668 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
60325597 TTACAATTTG
* ** *
60325607 GTCAGTGAACTATTCGGAAGTTTTCGTTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
60325638 GTCACTGAACTATTCAAAAGCTTTT-ATTTAA
1 GTCACTGAACTATTCAAAAG-TTTTCATTTAA
60325669 ATCGTTGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.39
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCATTTAA
Found at i:60332953 original size:34 final size:34
Alignment explanation
Indices: 60332897--60332962 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
60332887 TACTGTATAT
* *
60332897 ATGAACAGTACCATCTACGTAAATAGTATCGTGG
1 ATGAACAATACCATATACGTAAATAGTATCGTGG
* *
60332931 ATGAACAATACCGTATATGTAAATAGTATCGT
1 ATGAACAATACCATATACGTAAATAGTATCGT
60332963 AAATAGTCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (34 bp):
ATGAACAATACCATATACGTAAATAGTATCGTGG
Found at i:60334892 original size:20 final size:20
Alignment explanation
Indices: 60334855--60334900 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
60334845 AATGGGCATG
* *
60334855 AATTATTATTTAAATAATGA
1 AATTATTATCTAAATAATCA
**
60334875 AATTATTATCTACTTAATCA
1 AATTATTATCTAAATAATCA
60334895 AATTAT
1 AATTAT
60334901 AAAAATATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (20 bp):
AATTATTATCTAAATAATCA
Found at i:60336662 original size:29 final size:30
Alignment explanation
Indices: 60336616--60336672 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
60336606 TGCAATGTAT
60336616 ACATGAACTTTGATTTTG-TGCAATTTTGA
1 ACATGAACTTTGATTTTGATGCAATTTTGA
* *
60336645 ACATGATATTTTGA-TTTGATTCAATTTT
1 ACATGA-ACTTTGATTTTGATGCAATTTT
60336673 TTTAGCAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (30 bp):
ACATGAACTTTGATTTTGATGCAATTTTGA
Found at i:60336831 original size:31 final size:33
Alignment explanation
Indices: 60336796--60336857 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
60336786 ATGTGTAGAA
60336796 TTGAATCAAAATC-AAAGTTT-TATGTATATTT
1 TTGAATCAAAATCAAAAGTTTATATGTATATTT
*
60336827 TTGAATTAAAATCAAAAGTTTAATATGTATA
1 TTGAATCAAAATCAAAAGTTT-ATATGTATA
60336858 ATTGCACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.44
32 7 0.26
34 8 0.30
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (33 bp):
TTGAATCAAAATCAAAAGTTTATATGTATATTT
Found at i:60337059 original size:54 final size:55
Alignment explanation
Indices: 60336952--60337065 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 55
60336942 CACAAAATCT
60336952 TTCAAATGAAAATAAAAGCAAAGCAAAAAAAACCACTTCATGAAAACATCAACAA
1 TTCAAATGAAAATAAAAGCAAAGCAAAAAAAACCACTTCATGAAAACATCAACAA
* * *
60337007 TTCAAATGAAAATAAAAGCAAAGC-AAAAAAACCATTTTATGGAAACATCAACAA
1 TTCAAATGAAAATAAAAGCAAAGCAAAAAAAACCACTTCATGAAAACATCAACAA
60337061 TTCAA
1 TTCAA
60337066 CTTGGAATAG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 32 0.57
55 24 0.43
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.18
Consensus pattern (55 bp):
TTCAAATGAAAATAAAAGCAAAGCAAAAAAAACCACTTCATGAAAACATCAACAA
Found at i:60341155 original size:31 final size:33
Alignment explanation
Indices: 60341120--60341181 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
60341110 ATGTGTAGAA
*
60341120 TTGAATCAAAAT-TAAAGTTT-TATGTATATTT
1 TTGAATCAAAATCAAAAGTTTATATGTATATTT
*
60341151 TTGAATTAAAATCAAAAGTTTAATATGTATA
1 TTGAATCAAAATCAAAAGTTT-ATATGTATA
60341182 ATTGCACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 11 0.42
32 7 0.27
34 8 0.31
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (33 bp):
TTGAATCAAAATCAAAAGTTTATATGTATATTT
Found at i:60341334 original size:54 final size:54
Alignment explanation
Indices: 60341276--60341388 Score: 226
Period size: 54 Copynumber: 2.1 Consensus size: 54
60341266 CACAGAATCT
60341276 TTCAAATGAAAATAAAAGCAAAGCAAAAAAACCACTTTATGGAAACATCAACAA
1 TTCAAATGAAAATAAAAGCAAAGCAAAAAAACCACTTTATGGAAACATCAACAA
60341330 TTCAAATGAAAATAAAAGCAAAGCAAAAAAACCACTTTATGGAAACATCAACAA
1 TTCAAATGAAAATAAAAGCAAAGCAAAAAAACCACTTTATGGAAACATCAACAA
60341384 TTCAA
1 TTCAA
60341389 CTTGGAATAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.18
Consensus pattern (54 bp):
TTCAAATGAAAATAAAAGCAAAGCAAAAAAACCACTTTATGGAAACATCAACAA
Found at i:60342626 original size:30 final size:31
Alignment explanation
Indices: 60342565--60342626 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
60342555 ATAATTACAC
* *
60342565 TAAATCAAAATTCATATATTAAATTGCATAT
1 TAAAACAAAATTCATATATTAAATTGAATAT
* * *
60342596 TAAAACAAAATTTATGTA-TAAATTTAATAT
1 TAAAACAAAATTCATATATTAAATTGAATAT
60342626 T
1 T
60342627 CATCCCCACT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.40
Consensus pattern (31 bp):
TAAAACAAAATTCATATATTAAATTGAATAT
Found at i:60368463 original size:14 final size:12
Alignment explanation
Indices: 60368435--60368467 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
60368425 TGTGAAACCC
60368435 ATATATTTTGGT
1 ATATATTTTGGT
*
60368447 ATATATTTTGGG
1 ATATATTTTGGT
60368459 ATATATTTT
1 ATATATTTT
60368468 AAAATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (12 bp):
ATATATTTTGGT
Found at i:60368582 original size:41 final size:41
Alignment explanation
Indices: 60368531--60368610 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
60368521 ATATTTTATT
60368531 TTATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCC
1 TTATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCC
* *
60368572 TTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTTT
1 TTATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTT
60368611 TCTAATTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (41 bp):
TTATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCC
Found at i:60372308 original size:23 final size:24
Alignment explanation
Indices: 60372282--60372335 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
60372272 TAAAAAATTA
60372282 TTTTC-CCAATTAAGTTATAACTC
1 TTTTCTCCAATTAAGTTATAACTC
* *
60372305 TTTTCTCTATTTAAGTTATAACTC
1 TTTTCTCCAATTAAGTTATAACTC
60372329 TTTTCTC
1 TTTTCTC
60372336 TATTTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.52
Consensus pattern (24 bp):
TTTTCTCCAATTAAGTTATAACTC
Found at i:60372319 original size:24 final size:24
Alignment explanation
Indices: 60372291--60372342 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
60372281 ATTTTCCCAA
60372291 TTAAGTTATAACTCTTTTCTCTAT
1 TTAAGTTATAACTCTTTTCTCTAT
60372315 TTAAGTTATAACTCTTTTCTCTAT
1 TTAAGTTATAACTCTTTTCTCTAT
60372339 TTAA
1 TTAA
60372343 ATTCAGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.27, C:0.15, G:0.04, T:0.54
Consensus pattern (24 bp):
TTAAGTTATAACTCTTTTCTCTAT
Found at i:60386803 original size:6 final size:6
Alignment explanation
Indices: 60386792--60386819 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
60386782 AAAATATGTG
60386792 TTGGGC TTGGGC TTGGGC TTGGGC TTGG
1 TTGGGC TTGGGC TTGGGC TTGGGC TTGG
60386820 ACATTCAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.50, T:0.36
Consensus pattern (6 bp):
TTGGGC
Found at i:60387015 original size:15 final size:16
Alignment explanation
Indices: 60386985--60387017 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60386975 AGATGACTAT
*
60386985 ATAAAAAATTTAATAA
1 ATAAAAAATGTAATAA
60387001 ATAAAAAATGT-ATAA
1 ATAAAAAATGTAATAA
60387016 AT
1 AT
60387018 TTATTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
ATAAAAAATGTAATAA
Found at i:60387042 original size:17 final size:17
Alignment explanation
Indices: 60387022--60387071 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
60387012 ATAAATTTAT
60387022 TAAATATTAAAATAATA
1 TAAATATTAAAATAATA
* *
60387039 TAAATA-TAAATATATTT
1 TAAATATTAAA-ATAATA
*
60387056 TAAAAATTAAAA-AATA
1 TAAATATTAAAATAATA
60387072 ATATGAACGG
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
16 6 0.23
17 16 0.62
18 4 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAATATTAAAATAATA
Found at i:60396024 original size:21 final size:22
Alignment explanation
Indices: 60395979--60396025 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
60395969 ATAAATTTAA
* * *
60395979 TTATCAATGTTTGCATTTTTTT
1 TTATCAATGTTGGCAATTATTT
60396001 TTATCAAT-TTGGCAATTATTT
1 TTATCAATGTTGGCAATTATTT
60396022 TTAT
1 TTAT
60396026 TTATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.60
Consensus pattern (22 bp):
TTATCAATGTTGGCAATTATTT
Found at i:60396450 original size:20 final size:19
Alignment explanation
Indices: 60396425--60396482 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
60396415 TTTAAAAAAT
*
60396425 ATTTTTAAAAATTGTTATAA
1 ATTTTTAAAAATTATTA-AA
60396445 ATTTTTAAAACATTATTAAA
1 ATTTTTAAAA-ATTATTAAA
*
60396465 ATTTATAAAAA-TATTAAA
1 ATTTTTAAAAATTATTAAA
60396483 TAAAGTTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.20
19 1 0.03
20 21 0.60
21 6 0.17
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
ATTTTTAAAAATTATTAAA
Found at i:60396948 original size:10 final size:9
Alignment explanation
Indices: 60396916--60396947 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
60396906 AAATAAACAT
60396916 TTTTTAAAA
1 TTTTTAAAA
60396925 TTTTTAAAA
1 TTTTTAAAA
*
60396934 ATTTTAAAA
1 TTTTTAAAA
60396943 TTTTT
1 TTTTT
60396948 TTTCTTGACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:60399301 original size:4 final size:4
Alignment explanation
Indices: 60399286--60399328 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
60399276 TAAAAGCAGC
* * *
60399286 TGTA TTTA TGTA TGTA TGTA TGTA TGTG TGTG TGTA TTGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -TGTA TG
60399329 CTGAGTTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (4 bp):
TGTA
Found at i:60399460 original size:4 final size:4
Alignment explanation
Indices: 60399451--60399513 Score: 81
Period size: 4 Copynumber: 15.8 Consensus size: 4
60399441 TAAAAGCAGC
* * *
60399451 TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGTA TGCA TATA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
**
60399499 TGTA CATA TGTA TGT
1 TGTA TGTA TGTA TGT
60399514 GTATGCGTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (4 bp):
TGTA
Found at i:60404258 original size:14 final size:14
Alignment explanation
Indices: 60404239--60404268 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60404229 AGAAGAGACG
60404239 TGCTAAAAGTAGCA
1 TGCTAAAAGTAGCA
60404253 TGCTAAAAGTAGCA
1 TGCTAAAAGTAGCA
60404267 TG
1 TG
60404269 GAGGACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (14 bp):
TGCTAAAAGTAGCA
Found at i:60406235 original size:42 final size:42
Alignment explanation
Indices: 60406083--60406390 Score: 146
Period size: 43 Copynumber: 7.3 Consensus size: 42
60406073 TTGGCATAGC
* ** * *
60406083 AGTGCATCATTAGAT-AACCGAAAG-AAAGATACTGGCACAAA
1 AGTGCATCATCAGATAAACC-AAAGCAATCATACTGACACATA
* * * * *
60406124 TAGTGCATCATCAGACAATCTGAAA-CAGTTATACTGGCACACAT-
1 -AGTGCATCATCAGATAAAC-CAAAGCAATCATACT-G-ACACATA
* ** * * * *
60406168 AGTGCATGATTGGATAAAACGAAGCAATCATATTGGCACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGACACATA
**
60406210 AGTGCATCATC-GAATTTACCAAAGCAAAT-ATACTGACACATA
1 AGTGCATCATCAG-ATAAACCAAAGC-AATCATACTGACACATA
* *
60406252 AGGTACATCATCAGATAAACCGAAGCAATCATACTGACACATA
1 A-GTGCATCATCAGATAAACCAAAGCAATCATACTGACACATA
* * ** * * * * *
60406295 AGTGTATAATTGGA-AGTACCAAAGTAAAT-ATATTAACACACGA
1 AGTGCATCATCAGATA-AACCAAAG-CAATCATACTGACACA-TA
* ** **
60406338 GGTGCATCATTGGATAAACTGAAGCAATCATACTGACACATA
1 AGTGCATCATCAGATAAACCAAAGCAATCATACTGACACATA
60406380 AGTGCATCATC
1 AGTGCATCATC
60406391 TAATAGACCG
Statistics
Matches: 193, Mismatches: 56, Indels: 34
0.68 0.20 0.12
Matches are distributed among these distances:
41 7 0.04
42 84 0.44
43 95 0.49
44 3 0.02
45 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (42 bp):
AGTGCATCATCAGATAAACCAAAGCAATCATACTGACACATA
Found at i:60406377 original size:43 final size:42
Alignment explanation
Indices: 60406162--60406389 Score: 185
Period size: 42 Copynumber: 5.4 Consensus size: 42
60406152 TTATACTGGC
* * *
60406162 ACACAT-AGTGCATGATTGGATAAAACGAAGCAATCATATTG
1 ACACATAAGTGCATCATTGGATAAACCGAAGCAATCATACTG
* * * ** *
60406203 GCACATAAGTGCATCATCGAATTTACCAAAGCAAAT-ATACTG
1 ACACATAAGTGCATCATTGGATAAACCGAAGC-AATCATACTG
* **
60406245 ACACATAAGGTACATCATCAGATAAACCGAAGCAATCATACTG
1 ACACATAA-GTGCATCATTGGATAAACCGAAGCAATCATACTG
* * * * * * *
60406288 ACACATAAGTGTATAATTGGA-AGTACCAAAGTAAAT-ATATTA
1 ACACATAAGTGCATCATTGGATA-AACCGAAG-CAATCATACTG
* * *
60406330 ACACACGAGGTGCATCATTGGATAAACTGAAGCAATCATACTG
1 ACACA-TAAGTGCATCATTGGATAAACCGAAGCAATCATACTG
60406373 ACACATAAGTGCATCAT
1 ACACATAAGTGCATCAT
60406390 CTAATAGACC
Statistics
Matches: 140, Mismatches: 38, Indels: 17
0.72 0.19 0.09
Matches are distributed among these distances:
41 6 0.04
42 69 0.49
43 64 0.46
44 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (42 bp):
ACACATAAGTGCATCATTGGATAAACCGAAGCAATCATACTG
Found at i:60406405 original size:85 final size:84
Alignment explanation
Indices: 60406161--60406405 Score: 253
Period size: 85 Copynumber: 2.9 Consensus size: 84
60406151 GTTATACTGG
* * * *
60406161 CACACATA-GTGCATGATTGGATAAAACGAAGCAATCATATTGGCACATAAGTGCATCATCGAAT
1 CACACA-AGGTGCATCATTGGAT-AAACGAAGCAATCATACTGACACATAAGTGCATCATCTAAT
** * *
60406225 TTACCAAAGCAAATATACTGA
64 AGACCAAAGTAAATATACTAA
* * ** * * *
60406246 CACATAAGGTACATCATCAGATAAACCGAAGCAATCATACTGACACATAAGTGTATAAT-TGGA-
1 CACACAAGGTGCATCATTGGATAAA-CGAAGCAATCATACTGACACATAAGTGCATCATCT-AAT
*
60406309 AGTACCAAAGTAAATATATTAA
64 AG-ACCAAAGTAAATATACTAA
*
60406331 CACACGAGGTGCATCATTGGATAAACTGAAGCAATCATACTGACACATAAGTGCATCATCTAATA
1 CACACAAGGTGCATCATTGGATAAAC-GAAGCAATCATACTGACACATAAGTGCATCATCTAATA
*
60406396 GACCGAAGTA
65 GACCAAAGTA
60406406 TAACCCGTAC
Statistics
Matches: 128, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
84 5 0.04
85 120 0.94
86 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (84 bp):
CACACAAGGTGCATCATTGGATAAACGAAGCAATCATACTGACACATAAGTGCATCATCTAATAG
ACCAAAGTAAATATACTAA
Found at i:60412411 original size:28 final size:25
Alignment explanation
Indices: 60412350--60412412 Score: 63
Period size: 30 Copynumber: 2.3 Consensus size: 25
60412340 ATAGTTGTGT
*
60412350 TTTTATTACTTTCATTTATATACTA
1 TTTTATTACTTTCACTTATATACTA
60412375 TAGTATTATTCCACTTTCACTTATATAGCTA
1 T--T-TTATT--ACTTTCACTTATATA-CTA
60412406 TTTTATT
1 TTTTATT
60412413 TCATTTTTGC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
25 1 0.03
27 1 0.03
28 10 0.32
29 1 0.03
30 14 0.45
31 4 0.13
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.56
Consensus pattern (25 bp):
TTTTATTACTTTCACTTATATACTA
Found at i:60414277 original size:20 final size:21
Alignment explanation
Indices: 60414254--60414304 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
60414244 CTCATATTAG
*
60414254 ATATTAACATAACATA-TAAA
1 ATATTAACATAACAAATTAAA
* *
60414274 ATATAAACCTAACAAATTAAA
1 ATATTAACATAACAAATTAAA
60414295 ATATT-ACATA
1 ATATTAACATA
60414305 TATTTAGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (21 bp):
ATATTAACATAACAAATTAAA
Found at i:60415551 original size:23 final size:23
Alignment explanation
Indices: 60415523--60415569 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
60415513 AGAGGAAAGT
60415523 TTAAATAACATAAAAGAAAAAAA
1 TTAAATAACATAAAAGAAAAAAA
* * *
60415546 TTAAATTACTTAAAAGGAAAAAA
1 TTAAATAACATAAAAGAAAAAAA
60415569 T
1 T
60415570 ATAGGGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.23
Consensus pattern (23 bp):
TTAAATAACATAAAAGAAAAAAA
Found at i:60416966 original size:59 final size:57
Alignment explanation
Indices: 60416854--60416977 Score: 160
Period size: 59 Copynumber: 2.1 Consensus size: 57
60416844 GATAAAATTG
* * *
60416854 AATAGTTGGATAATCATTTTGTAACTCATATTTAGGTGACCAAAATAGAAATTTACT
1 AATAGTTGGATAATCATTTTGTAACTCATAGTTAGATGACCAAAAAAGAAATTTACT
* * *
60416911 AATAGTTGGATGAT-ATTTTGTAACTTTTCATAGTTAGATGACTAAAAAATAAATTTACT
1 AATAGTTGGATAATCATTTTGTAAC---TCATAGTTAGATGACCAAAAAAGAAATTTACT
60416970 AATAGTTG
1 AATAGTTG
60416978 ACTGCCTACC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
56 10 0.17
57 13 0.22
59 35 0.60
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (57 bp):
AATAGTTGGATAATCATTTTGTAACTCATAGTTAGATGACCAAAAAAGAAATTTACT
Found at i:60417256 original size:2 final size:2
Alignment explanation
Indices: 60417249--60417299 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
60417239 GATTGTTTAA
60417249 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
60417291 TC TC TC TC T
1 TC TC TC TC T
60417300 TTTCGGTTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:60418154 original size:15 final size:15
Alignment explanation
Indices: 60418136--60418187 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
60418126 AGAGGAAGAG
*
60418136 GAGGAAGTGGAAGTT
1 GAGGAAGTGGAAGTA
* * *
60418151 GAGGAAGAGGTAGAA
1 GAGGAAGTGGAAGTA
60418166 GAGGAAGTGGAAGTA
1 GAGGAAGTGGAAGTA
*
60418181 GAAGAAG
1 GAGGAAG
60418188 AAGAAGAAGA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.46, T:0.12
Consensus pattern (15 bp):
GAGGAAGTGGAAGTA
Found at i:60418159 original size:24 final size:24
Alignment explanation
Indices: 60418127--60418173 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60418117 TGAAGAAATA
*
60418127 GAGGAAGAGG-AGGAAGTGGAAGTT
1 GAGGAAGAGGTA-GAAGAGGAAGTT
60418151 GAGGAAGAGGTAGAAGAGGAAGT
1 GAGGAAGAGGTAGAAGAGGAAGT
60418174 GGAAGTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (24 bp):
GAGGAAGAGGTAGAAGAGGAAGTT
Found at i:60418170 original size:30 final size:30
Alignment explanation
Indices: 60418126--60418200 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
60418116 ATGAAGAAAT
* * *
60418126 AGAGGAAGAGGAGGAAGTGGAAGTTGAGGA
1 AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
*
60418156 AGAGGTAGAAGAGGAAGTGGAAGTAGAAGA
1 AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
*
60418186 AGAAGAAGAAGAGGA
1 AGAGGAAGAAGAGGA
60418201 CGAGGACGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.45, T:0.08
Consensus pattern (30 bp):
AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
Found at i:60427933 original size:2 final size:2
Alignment explanation
Indices: 60427926--60427961 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
60427916 TCATTTTCAT
60427926 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
60427962 AAAGAAGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:60428986 original size:16 final size:17
Alignment explanation
Indices: 60428955--60428987 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60428945 TATAAAAACA
*
60428955 AATTTAAAATTTTATTT
1 AATTGAAAATTTTATTT
60428972 AATTGAAAA-TTTATTT
1 AATTGAAAATTTTATTT
60428988 TTTAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
AATTGAAAATTTTATTT
Found at i:60432434 original size:17 final size:17
Alignment explanation
Indices: 60432406--60432447 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
60432396 TAATAAATAA
*
60432406 AATTATCCAACCCAACTC
1 AATTA-CCAACCCAACCC
*
60432424 AATTACCAACCTAACCC
1 AATTACCAACCCAACCC
60432441 AATTACC
1 AATTACC
60432448 CAATCCAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.21
Consensus pattern (17 bp):
AATTACCAACCCAACCC
Found at i:60432484 original size:39 final size:39
Alignment explanation
Indices: 60432437--60432533 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
60432427 TACCAACCTA
* *
60432437 ACCCAATTACCCAATCCAGTAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
*
60432476 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
60432515 ACCCAATTA-CCAACCCAAT
1 ACCCAATTACCCAACCCAAT
60432534 TAATTTCAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
38 10 0.19
39 44 0.81
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.20
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:60432564 original size:17 final size:17
Alignment explanation
Indices: 60432544--60432606 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
60432534 TAATTTCAAG
60432544 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
60432561 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
60432579 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
60432598 AATTATGTA
1 AATTATGTA
60432607 GTTATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:60432587 original size:37 final size:37
Alignment explanation
Indices: 60432541--60432615 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
60432531 AATTAATTTC
*
60432541 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTGATTCA
* *
60432578 AAGACTTATGTAATATTTTTAATTATGTAGTTATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTGATTCA
60432615 A
1 A
60432616 TTCGGGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTGATTCA
Found at i:60434047 original size:16 final size:18
Alignment explanation
Indices: 60434021--60434055 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
60434011 AGGGGCATGG
60434021 TAAATTA-TTTTAAAAAA
1 TAAATTATTTTTAAAAAA
60434038 TAAA-TATTTTTAAAAAA
1 TAAATTATTTTTAAAAAA
60434055 T
1 T
60434056 GAGCCACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAATTATTTTTAAAAAA
Found at i:60434433 original size:2 final size:2
Alignment explanation
Indices: 60434426--60434456 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60434416 TTAAAAACTG
*
60434426 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60434457 GGCACAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:60448784 original size:30 final size:29
Alignment explanation
Indices: 60448748--60448872 Score: 94
Period size: 30 Copynumber: 4.1 Consensus size: 29
60448738 GACACTTTCG
60448748 AAAATTTTCATTAAACCTTTCAAAATTTTT
1 AAAATTTTCATTAAA-CTTTCAAAATTTTT
* *
60448778 AAAATTTTCTATT-AAGTCTT-AAACTTTTT
1 AAAATTTTC-ATTAAACT-TTCAAAATTTTT
* * * * *
60448807 CAAAGTTTTAATTAAACATACAAAAATTTT
1 -AAAATTTTCATTAAACTTTCAAAATTTTT
60448837 AAAATATTCTCATTAAA-TTCTCCAAAATTTTT
1 AAAAT-TT-TCATTAAACTT-T-CAAAATTTTT
60448869 AAAA
1 AAAA
60448873 AATTTAATTT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
29 17 0.24
30 32 0.44
31 10 0.14
32 13 0.18
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (29 bp):
AAAATTTTCATTAAACTTTCAAAATTTTT
Found at i:60454202 original size:30 final size:30
Alignment explanation
Indices: 60454168--60454230 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
60454158 TACTGTTTTA
* * *
60454168 TTGTTAGTTTTGTTATTCTTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
60454198 TTGTTAATTTTATTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
60454228 TTG
1 TTG
60454231 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:60458196 original size:9 final size:9
Alignment explanation
Indices: 60458182--60458212 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
60458172 CTGATTACAG
60458182 TTGAAGCAT
1 TTGAAGCAT
60458191 TTGAAGCA-
1 TTGAAGCAT
60458199 TTGAAGCAT
1 TTGAAGCAT
60458208 TTGAA
1 TTGAA
60458213 ATGGCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (9 bp):
TTGAAGCAT
Found at i:60458957 original size:46 final size:46
Alignment explanation
Indices: 60458856--60459099 Score: 316
Period size: 46 Copynumber: 5.6 Consensus size: 46
60458846 TACGTATGAT
*
60458856 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
60458899 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
60458945 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
60458991 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A----A-
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* * * *
60459027 CACTTATCACTTTTTCATTTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
60459073 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
60459100 AGTACTCAAA
Statistics
Matches: 177, Mismatches: 11, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
36 27 0.15
37 1 0.01
38 3 0.02
40 1 0.01
41 2 0.01
42 1 0.01
43 10 0.06
44 8 0.05
45 21 0.12
46 103 0.58
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:60459029 original size:36 final size:36
Alignment explanation
Indices: 60458988--60459058 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
60458978 TAGCTAAGGC
*
60458988 TAACACTTATCACTTTGTCACTTGATCAGATAAGTA
1 TAACACTTATCACTTTGTCACTTAATCAGATAAGTA
* *
60459024 TAACACTTATCACTTTTTCATTTAATCAGATAAGT
1 TAACACTTATCACTTTGTCACTTAATCAGATAAGT
60459059 GTAGCTAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (36 bp):
TAACACTTATCACTTTGTCACTTAATCAGATAAGTA
Found at i:60459053 original size:82 final size:82
Alignment explanation
Indices: 60458945--60459099 Score: 247
Period size: 82 Copynumber: 1.9 Consensus size: 82
60458935 CTAAGGCTAC
* * *
60458945 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTAATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTATCACT
60459010 TGATCAGATAAGTATAA
66 TGATCAGATAAGTATAA
* * * *
60459027 CACTTATCACTTTTTCATTTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTCTCACTTAATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTATCACT
60459092 TGATCAGA
66 TGATCAGA
60459100 AGTACTCAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 66 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTAATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTATCACT
TGATCAGATAAGTATAA
Found at i:60464054 original size:22 final size:21
Alignment explanation
Indices: 60464019--60464152 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 21
60464009 AAAGGGTATC
* *
60464019 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
60464040 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
60464063 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60464082 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60464101 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
60464120 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60464139 TGCATATCATATCT
1 TACAAATCATATCT
60464153 AAGATTGCAT
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
17 2 0.02
19 60 0.64
21 7 0.07
22 15 0.16
23 10 0.11
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Done.