Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 205 of 211
Found at i:60464062 original size:23 final size:22
Alignment explanation
Indices: 60464019--60464076 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
60464009 AAAGGGTATC
* *
60464019 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
60464040 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
60464063 TGCATATCATATCT
1 TACAAATCATATCT
60464077 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:60464079 original size:19 final size:19
Alignment explanation
Indices: 60464055--60464167 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
60464045 AATCATATCT
60464055 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
60464074 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
60464093 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
60464112 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
60464131 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
60464150 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
60464168 TGAAGATTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 84 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:60464116 original size:57 final size:56
Alignment explanation
Indices: 60464048--60464176 Score: 181
Period size: 57 Copynumber: 2.3 Consensus size: 56
60464038 ATTACAAAAT
* *
60464048 CATATC-TTCTAAGATTGCATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATTCTAAGATTACATATCATATCTAAGATTACATATCATATCTAAGATTG
* * *
60464103 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTACATATCATATCTAAGATTACATATCATATCTAAGATTG
*
60464160 CATATCATT-GAAGATTA
1 CATATCATTCTAAGATTA
60464177 TGTTTCCATA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
55 13 0.20
56 2 0.03
57 51 0.77
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (56 bp):
CATATCATTCTAAGATTACATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:60464715 original size:132 final size:132
Alignment explanation
Indices: 60464491--60465385 Score: 1434
Period size: 132 Copynumber: 6.8 Consensus size: 132
60464481 TAGGACTTAC
* * * * *
60464491 AATCTTCAACCTATTCCACTGCTGACTAGGG-AGATATG-ATTACTGGCTTCAATGTAATCCACT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGCTTCAATGTACTCCACT
*
60464554 GTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT
64 GTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
60464619 CTGA
129 CTGA
*
60464623 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
60464688 AACCACAGGGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60464753 GA
131 GA
* *
60464755 AATCTTCAATCTATTCCACTGTTGTCCAAGGAAGTAGAATTACTGGCTTCAATGTATTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* * *
60464820 AACCACAGGGAGGTAAAATCCGCCATCTTCGATTTGCTCCATTACTGCTTAGGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60464885 GA
131 GA
60464887 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* ** *
60464952 AACCACAGGGTGGTAAAATCATCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60465017 GA
131 GA
* * *
60465019 AATCTTCAATCTATTCCACTGTTATCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
*
60465084 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60465149 GA
131 GA
* * ** * * *
60465151 AATCTTCAATCTATTCCACTATTTTTTAGGTAAGTAGAATTACTGGTTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
60465216 AACCACAGGGGGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60465281 GA
131 GA
* * * *
60465283 AATCTTCAATCTATTCAACTGTTATCCAGGGAAGTGGAATTACTGGCTTTAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
*
60465348 AACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
60465386 TCGCTGTCAA
Statistics
Matches: 706, Mismatches: 55, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 703 1.00
133 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GA
Found at i:60466728 original size:17 final size:17
Alignment explanation
Indices: 60466698--60466732 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
60466688 CATTGGCTTC
60466698 TCTTTTTTCTTTTTTTT
1 TCTTTTTTCTTTTTTTT
60466715 TCTTTCTTTCTTTTTTTT
1 TCTTT-TTTCTTTTTTTT
60466733 GCCCTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TCTTTTTTCTTTTTTTT
Found at i:60470181 original size:40 final size:40
Alignment explanation
Indices: 60470132--60470211 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
60470122 TCTTATAAGA
*
60470132 GACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGG
1 GACCCCTCATCTCGGTGCCAACGCCATGTCCCAGACATGG
*
60470172 GACCCCTCATCTCGGTGCCAATGCCATGTCCCAGACATGG
1 GACCCCTCATCTCGGTGCCAACGCCATGTCCCAGACATGG
60470212 TCTTACATGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.20, C:0.38, G:0.23, T:0.20
Consensus pattern (40 bp):
GACCCCTCATCTCGGTGCCAACGCCATGTCCCAGACATGG
Found at i:60474458 original size:19 final size:19
Alignment explanation
Indices: 60474431--60474560 Score: 188
Period size: 19 Copynumber: 6.8 Consensus size: 19
60474421 AAATTAAATC
*
60474431 TCTAAGATTATATATCATA
1 TCTAAGATTGTATATCATA
* *
60474450 TCTACGATTGCATATCATA
1 TCTAAGATTGTATATCATA
*
60474469 TCTAAGATTATATATCATA
1 TCTAAGATTGTATATCATA
*
60474488 TCTAAGATTGCATATCATA
1 TCTAAGATTGTATATCATA
* *
60474507 TCTAAGATTATATATTATA
1 TCTAAGATTGTATATCATA
*
60474526 TCTAAGATTGCATATCATA
1 TCTAAGATTGTATATCATA
60474545 TCTAAGATTGTATATC
1 TCTAAGATTGTATATC
60474561 CCTGAAGATT
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 96 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:60474475 original size:38 final size:38
Alignment explanation
Indices: 60474431--60474560 Score: 233
Period size: 38 Copynumber: 3.4 Consensus size: 38
60474421 AAATTAAATC
*
60474431 TCTAAGATTATATATCATATCTACGATTGCATATCATA
1 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
60474469 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
*
60474507 TCTAAGATTATATATTATATCTAAGATTGCATATCATA
1 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
*
60474545 TCTAAGATTGTATATC
1 TCTAAGATTATATATC
60474561 CCTGAAGATT
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 88 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (38 bp):
TCTAAGATTATATATCATATCTAAGATTGCATATCATA
Found at i:60475611 original size:19 final size:19
Alignment explanation
Indices: 60475587--60475623 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60475577 ATAAATTTAT
*
60475587 TTTTACATATACCTACAAA
1 TTTTACATATACCAACAAA
60475606 TTTTACATATACCAACAA
1 TTTTACATATACCAACAA
60475624 TTAATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTTACATATACCAACAAA
Found at i:60475870 original size:33 final size:33
Alignment explanation
Indices: 60475833--60475898 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
60475823 AAATGAAATT
60475833 TTAATTTTAGCTCAATTATACATATACCAACAA
1 TTAATTTTAGCTCAATTATACATATACCAACAA
*
60475866 TTAATTTTAGCTCAATTATACATATACCTACAA
1 TTAATTTTAGCTCAATTATACATATACCAACAA
60475899 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAATTTTAGCTCAATTATACATATACCAACAA
Found at i:60477778 original size:49 final size:49
Alignment explanation
Indices: 60477721--60477824 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
60477711 TCATGTGTTA
* * *
60477721 TAATTTTATATAGTGTTGAGCTTTTGATTCATAATATTTAACTTAATTT
1 TAATTTTATAAAGTGTTCAGCTTTTGATTCATAATATTAAACTTAATTT
* *
60477770 TAATTTTATAAAGTGTTCATCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCAGCTTTTGATTCATAATATTAAACTTAATTT
60477819 TAATTT
1 TAATTT
60477825 GTTTTTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.53
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCAGCTTTTGATTCATAATATTAAACTTAATTT
Found at i:60479193 original size:15 final size:16
Alignment explanation
Indices: 60479165--60479194 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60479155 TAAATTCATA
60479165 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
60479181 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
60479195 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:60479205 original size:61 final size:61
Alignment explanation
Indices: 60479135--60479325 Score: 221
Period size: 61 Copynumber: 3.2 Consensus size: 61
60479125 ATTTTATAGT
60479135 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
* * ** * * * * * * *
60479196 ATTATATATTTTAATTAAATTATATTTA-ATAATAATTATTT-TAAATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TATTTAT-TATTAAGAATTTTATTA-A
60479255 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
60479316 ATTATATATT
1 ATTATATATT
60479326 TTTATTAAAT
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 2 0.02
59 35 0.35
60 16 0.16
61 45 0.45
62 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (61 bp):
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
Found at i:60479214 original size:18 final size:17
Alignment explanation
Indices: 60479186--60479220 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
60479176 ATTATTAAGA
60479186 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
60479203 ATTTTAATTAAATTATAT
1 ATTTT-ATTAAATTATAT
60479221 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:60479228 original size:18 final size:18
Alignment explanation
Indices: 60479191--60479239 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
60479181 TAAGAATTTT
*
60479191 ATTAAATTATATATT-TTA
1 ATTAAATTATAT-TTAATA
60479209 ATTAAATTATATTTAATA
1 ATTAAATTATATTTAATA
60479227 A-T-AATTAT-TTTAA
1 ATTAAATTATATTTAA
60479240 ATTATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.17
16 6 0.21
17 3 0.10
18 15 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAATTATATTTAATA
Found at i:60479232 original size:120 final size:120
Alignment explanation
Indices: 60479098--60479360 Score: 508
Period size: 120 Copynumber: 2.2 Consensus size: 120
60479088 ATTCTCAAGT
60479098 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
60479163 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
66 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
60479218 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
*
60479283 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTATTAAATTA
66 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
*
60479338 TATTTAATAATAATTATGTTAAA
1 TATTTAATAATAATTATTTTAAA
60479361 ATATGATTAA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 141 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
Found at i:60479313 original size:15 final size:16
Alignment explanation
Indices: 60479285--60479314 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60479275 TAAATTCATA
60479285 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
60479301 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
60479315 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:60479710 original size:20 final size:20
Alignment explanation
Indices: 60479687--60479726 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
60479677 ATTACAAATG
60479687 ATGGTTAAAGAAGAATTAAC
1 ATGGTTAAAGAAGAATTAAC
*
60479707 ATGGTTAAAGTAGAATTAAC
1 ATGGTTAAAGAAGAATTAAC
60479727 TAGAAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.28
Consensus pattern (20 bp):
ATGGTTAAAGAAGAATTAAC
Found at i:60479760 original size:20 final size:20
Alignment explanation
Indices: 60479720--60479760 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60479710 GTTAAAGTAG
**
60479720 AATTAACTAGAAATATGCAA
1 AATTAACTAGAAATAAACAA
*
60479740 AATTAACTAGAATTAAACAA
1 AATTAACTAGAAATAAACAA
60479760 A
1 A
60479761 TAACAGTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.10, G:0.07, T:0.24
Consensus pattern (20 bp):
AATTAACTAGAAATAAACAA
Found at i:60479901 original size:26 final size:26
Alignment explanation
Indices: 60479872--60479925 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
60479862 TTAAAAAAAG
*
60479872 TTTGAATCGAGTTGAGT-AAATAGAAA
1 TTTGAATCGAGTTGAATCAAAT-GAAA
* *
60479898 TTTGAGTTGAGTTGAATCAAATGAAA
1 TTTGAATCGAGTTGAATCAAATGAAA
60479924 TT
1 TT
60479926 GTTTGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (26 bp):
TTTGAATCGAGTTGAATCAAATGAAA
Found at i:60480151 original size:30 final size:28
Alignment explanation
Indices: 60480117--60480189 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 28
60480107 AAATTATTAT
*
60480117 TTTAGATTTTTTAAAATTTTTTATATATTC
1 TTTAGATTTTTTAAAA-TTTTTAGA-ATTC
* *
60480147 TTTAGAATTTTTAATATTTTTAGAATTC
1 TTTAGATTTTTTAAAATTTTTAGAATTC
*
60480175 TGTA-ATTTTTTAAAA
1 TTTAGATTTTTTAAAA
60480190 AAAATATACA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 9 0.24
28 7 0.19
29 7 0.19
30 14 0.38
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTAGATTTTTTAAAATTTTTAGAATTC
Found at i:60480155 original size:21 final size:19
Alignment explanation
Indices: 60480124--60480186 Score: 67
Period size: 18 Copynumber: 3.3 Consensus size: 19
60480114 TATTTTAGAT
*
60480124 TTTTTAAAATTTTTTATATA
1 TTTTTAGAATTTTTTA-ATA
60480144 TTCTTTAGAA-TTTTTAATA
1 TT-TTTAGAATTTTTTAATA
* *
60480163 TTTTTAGAATTCTGTAAT-
1 TTTTTAGAATTTTTTAATA
60480181 TTTTTA
1 TTTTTA
60480187 AAAAAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 13 0.34
19 11 0.29
20 8 0.21
21 6 0.16
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTTAGAATTTTTTAATA
Found at i:60483969 original size:22 final size:23
Alignment explanation
Indices: 60483919--60483969 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
60483909 TATTCTGCTG
*
60483919 TTATT-TTACTGTCATTTTATTA
1 TTATTATTACTATCATTTTATTA
*
60483941 TTA-TATTACTATTATTTTATT-
1 TTATTATTACTATCATTTTATTA
60483962 TTATTATT
1 TTATTATT
60483970 TAGATATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (23 bp):
TTATTATTACTATCATTTTATTA
Found at i:60488457 original size:20 final size:20
Alignment explanation
Indices: 60488434--60488472 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60488424 CCTTAAACTC
60488434 AAACCCAAAATCATAAACCT
1 AAACCCAAAATCATAAACCT
** *
60488454 AAACCTTAAATCCTAAACC
1 AAACCCAAAATCATAAACC
60488473 AAAAGGTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (20 bp):
AAACCCAAAATCATAAACCT
Found at i:60488768 original size:31 final size:29
Alignment explanation
Indices: 60488730--60488803 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
60488720 ACTACCAAAA
* *
60488730 TAGTCACTTTTGTTTGACTCAGGTTACATTT
1 TAGTCACTTATGTTTGA--AAGGTTACATTT
* *
60488761 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
60488790 TAGTCACTTATGTT
1 TAGTCACTTATGTT
60488804 ATCACATTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 23 0.59
31 16 0.41
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:60488825 original size:31 final size:29
Alignment explanation
Indices: 60488755--60488828 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
60488745 GACTCAGGTT
* *
60488755 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* *
60488784 ACGTTTTAGTCACTTATGTTATCACATTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
60488815 ACATTTTAGTCACT
1 ACATTTTAGTCACT
60488829 GAGCCGTTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 19 0.50
30 2 0.05
31 17 0.45
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:60489432 original size:29 final size:29
Alignment explanation
Indices: 60489385--60489454 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
60489375 CACAATAACG
60489385 TAAGTGACTAAAACATAACATT-TCAAACA
1 TAAGTGACTAAAACATAAC-TTGTCAAACA
**
60489414 TAAGTGACTAAAATGTAACTTGAGTCAAACA
1 TAAGTGACTAAAACATAACTT--GTCAAACA
*
60489445 AAAGTGACTA
1 TAAGTGACTA
60489455 TTTTGATAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 17 0.49
31 16 0.46
ACGTcount: A:0.49, C:0.14, G:0.13, T:0.24
Consensus pattern (29 bp):
TAAGTGACTAAAACATAACTTGTCAAACA
Found at i:60491185 original size:3 final size:3
Alignment explanation
Indices: 60491177--60491231 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
60491167 GCCTATAACC
*
60491177 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
60491225 ATT ATT A
1 ATT ATT A
60491232 GAAATTGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:60491284 original size:18 final size:18
Alignment explanation
Indices: 60491249--60491284 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60491239 ATAACATTTA
* *
60491249 AGTGAGATTTTATTATAT
1 AGTGAGATTTCATGATAT
60491267 AGTGAGATTTCATGATAT
1 AGTGAGATTTCATGATAT
60491285 CCTTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.44
Consensus pattern (18 bp):
AGTGAGATTTCATGATAT
Found at i:60502845 original size:29 final size:30
Alignment explanation
Indices: 60502794--60502850 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
60502784 AGAATTGGAG
* *
60502794 CAAATTAAGATTTCATGTTTAAAATTATTC
1 CAAATTAAGAATTCATGTATAAAATTATTC
60502824 CAAATTAA-AATTCATGTATAAAATTAT
1 CAAATTAAGAATTCATGTATAAAATTAT
60502851 ATATTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (30 bp):
CAAATTAAGAATTCATGTATAAAATTATTC
Found at i:60512785 original size:17 final size:18
Alignment explanation
Indices: 60512757--60512796 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
60512747 TTGATTTGAT
60512757 TAAATAAAATAAAATTTA
1 TAAATAAAATAAAATTTA
*
60512775 TAAAT-AAATAAATTTTA
1 TAAATAAAATAAAATTTA
*
60512792 AAAAT
1 TAAAT
60512797 TAGTACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATAAAATAAAATTTA
Found at i:60514178 original size:48 final size:51
Alignment explanation
Indices: 60514108--60514221 Score: 117
Period size: 51 Copynumber: 2.3 Consensus size: 51
60514098 ATAAATATAA
* * * * *
60514108 ATATTTATATTAAATACAAGATCTGAAA-AATA-ATA-TAAACAAAAATTT
1 ATATTTATATAAAACACAAGATCTAAAACAAGACAAATTAAACAAAAATTT
* * * *
60514156 ATATTTATGTAAAACACCAGATCTAAAACAAGACAAATTAAATAAATATTT
1 ATATTTATATAAAACACAAGATCTAAAACAAGACAAATTAAACAAAAATTT
*
60514207 ATATTTATTTAAAAC
1 ATATTTATATAAAAC
60514222 TTCAAATTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
48 23 0.43
49 3 0.06
50 2 0.04
51 25 0.47
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (51 bp):
ATATTTATATAAAACACAAGATCTAAAACAAGACAAATTAAACAAAAATTT
Found at i:60514675 original size:17 final size:17
Alignment explanation
Indices: 60514653--60514694 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
60514643 TAATTTGAAT
60514653 AAAATCAAATCAAATTG
1 AAAATCAAATCAAATTG
60514670 AAAATCAAATCAAATTG
1 AAAATCAAATCAAATTG
60514687 AAAATCAA
1 AAAATCAA
60514695 TCTGATTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAATCAAATCAAATTG
Found at i:60517335 original size:51 final size:51
Alignment explanation
Indices: 60517273--60517383 Score: 195
Period size: 51 Copynumber: 2.2 Consensus size: 51
60517263 AAATATAAGA
*
60517273 TATATTTATTTAAATAATTTTTAAATAAGAAATAAAAATATATAATACAAT
1 TATATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAAT
60517324 TATATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAAT
1 TATATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAAT
* *
60517375 CATGTTTAT
1 TATATTTAT
60517384 ATTCATTCTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (51 bp):
TATATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAAT
Found at i:60517444 original size:16 final size:16
Alignment explanation
Indices: 60517409--60517441 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60517399 ATTTAGATTA
*
60517409 TTAAGTCAAACTAAAT
1 TTAAATCAAACTAAAT
60517425 TTAAATCAAA-TAAAT
1 TTAAATCAAACTAAAT
60517440 TT
1 TT
60517442 TAATATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (16 bp):
TTAAATCAAACTAAAT
Found at i:60535270 original size:16 final size:16
Alignment explanation
Indices: 60535246--60535279 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60535236 TTGTTGGTTC
*
60535246 AATTAAAAATTATTAA
1 AATTAAAAAATATTAA
*
60535262 AATTTAAAAATATTAA
1 AATTAAAAAATATTAA
60535278 AA
1 AA
60535280 AATCTTGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTAAAAAATATTAA
Found at i:60538836 original size:22 final size:23
Alignment explanation
Indices: 60538808--60538850 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
60538798 CATCTAATTC
60538808 AACCATGTAGAAACT-ACAAAAG
1 AACCATGTAGAAACTGACAAAAG
*
60538830 AACCATGTAGGAACTGACAAA
1 AACCATGTAGAAACTGACAAA
60538851 CAATCACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (23 bp):
AACCATGTAGAAACTGACAAAAG
Found at i:60549616 original size:58 final size:57
Alignment explanation
Indices: 60549549--60549693 Score: 191
Period size: 57 Copynumber: 2.5 Consensus size: 57
60549539 TTCCCGGGCT
* * * *
60549549 TGAATTTTTTTTGTCCAAGTTAGTATCTGAACTTGACGATTATTTCCACATTGGGGTC
1 TGAACTTTTTTTGTCCAAGTTAGTCTCTGAACTTCACGACTA-TTCCACATTGGGGTC
* * * *
60549607 TGAACTTTTTTTATCCAAGTTAGCCCCTGAACTTCATGACTATTCCACATTGGGGTC
1 TGAACTTTTTTTGTCCAAGTTAGTCTCTGAACTTCACGACTATTCCACATTGGGGTC
* *
60549664 TAAACTTTTTTGGTCCAAGTTAGTCTCTGA
1 TGAACTTTTTTTGTCCAAGTTAGTCTCTGA
60549694 TATTTCCTTA
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
57 40 0.54
58 34 0.46
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (57 bp):
TGAACTTTTTTTGTCCAAGTTAGTCTCTGAACTTCACGACTATTCCACATTGGGGTC
Found at i:60557058 original size:17 final size:18
Alignment explanation
Indices: 60557036--60557071 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
60557026 TTTGTTTATT
60557036 ACATATTATA-TAAATTA
1 ACATATTATATTAAATTA
*
60557053 ACATATTTTATTAAATTA
1 ACATATTATATTAAATTA
60557071 A
1 A
60557072 ACATGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
ACATATTATATTAAATTA
Found at i:60557080 original size:18 final size:19
Alignment explanation
Indices: 60557041--60557081 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
60557031 TTATTACATA
*
60557041 TTATATAAATTAACATATT
1 TTATATAAATTAACATAGT
60557060 TTAT-TAAATTAAACAT-GT
1 TTATATAAATT-AACATAGT
60557078 TTAT
1 TTAT
60557082 CCAAACTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (19 bp):
TTATATAAATTAACATAGT
Found at i:60560792 original size:3 final size:3
Alignment explanation
Indices: 60560778--60560827 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
60560768 AAATGACATT
* * *
60560778 TTA TTA TT- TTA TTA TTA TTG TTA TTA TTA ATA TTA TTG TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60560824 TTA T
1 TTA T
60560828 GACATAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:60560813 original size:18 final size:18
Alignment explanation
Indices: 60560781--60560822 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
60560771 TGACATTTTA
*
60560781 TTATT-TTATTATTATTG
1 TTATTATTAATATTATTG
60560798 TTATTATTAATATTATTG
1 TTATTATTAATATTATTG
60560816 TTATTAT
1 TTATTAT
60560823 ATTATGACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (18 bp):
TTATTATTAATATTATTG
Found at i:60563652 original size:25 final size:25
Alignment explanation
Indices: 60563569--60563683 Score: 133
Period size: 25 Copynumber: 4.6 Consensus size: 25
60563559 GGCCACCGTT
* *
60563569 TTCAGCTCTTATGAGCTTCCCGTTA
1 TTCAGCTCGTATGAGCTTCCTGTTA
* * *
60563594 TTCAGATCTTATGAGCTTCATGTTA
1 TTCAGCTCGTATGAGCTTCCTGTTA
*
60563619 TTCAGCTCGCATGAGCTTCCTGTTA
1 TTCAGCTCGTATGAGCTTCCTGTTA
* * *
60563644 TTCAGCTCGAAAGAGCTTACTGTT-
1 TTCAGCTCGTATGAGCTTCCTGTTA
*
60563668 TACAGCTCGTATGAGC
1 TTCAGCTCGTATGAGC
60563684 ATACATGTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
24 13 0.17
25 64 0.83
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTCCTGTTA
Found at i:60566499 original size:3 final size:3
Alignment explanation
Indices: 60566491--60566558 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
60566481 GATGCAGTAA
60566491 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
60566539 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
60566559 AAGATACTTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:60570216 original size:13 final size:14
Alignment explanation
Indices: 60570184--60570223 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
60570174 GAGTCGTAAA
*
60570184 AAAAAATGAGATATG
1 AAAAAATGA-AAATG
60570199 AAAAAATGAAAATG
1 AAAAAATGAAAATG
60570213 -AAAAATGAAAA
1 AAAAAATGAAAA
60570224 ATGGAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 11 0.46
14 4 0.17
15 9 0.38
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAAAATGAAAATG
Found at i:60570230 original size:8 final size:7
Alignment explanation
Indices: 60570185--60570232 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
60570175 AGTCGTAAAA
60570185 AAAAATG
1 AAAAATG
* *
60570192 AGATATG
1 AAAAATG
60570199 AAAAAATG
1 -AAAAATG
60570207 -AAAATG
1 AAAAATG
60570213 AAAAATG
1 AAAAATG
60570220 AAAAATGG
1 AAAAAT-G
60570228 AAAAA
1 AAAAA
60570233 GTAAAAGTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
6 6 0.18
7 17 0.50
8 11 0.32
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:60570238 original size:15 final size:15
Alignment explanation
Indices: 60570185--60570232 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
60570175 AGTCGTAAAA
* * *
60570185 AAAAATGAGATATGA
1 AAAAATGAAAAATGG
60570200 AAAAATG-AAAAT-G
1 AAAAATGAAAAATGG
60570213 AAAAATGAAAAATGG
1 AAAAATGAAAAATGG
60570228 AAAAA
1 AAAAA
60570233 GTAAAAGTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 7 0.25
14 8 0.29
15 13 0.46
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (15 bp):
AAAAATGAAAAATGG
Found at i:60570381 original size:42 final size:42
Alignment explanation
Indices: 60570314--60570394 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
60570304 CCGAAAATGG
*
60570314 CAGCTCAAATTTTGATCAAAATGGGGCATGAGGTAATCAGAA
1 CAGCTCAAATTTTGACCAAAATGGGGCATGAGGTAATCAGAA
* * *
60570356 CAGCTCAAATTTTGACCAAATTGGGGCATGTGGTGATCA
1 CAGCTCAAATTTTGACCAAAATGGGGCATGAGGTAATCA
60570395 TGCTATGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (42 bp):
CAGCTCAAATTTTGACCAAAATGGGGCATGAGGTAATCAGAA
Found at i:60571643 original size:88 final size:88
Alignment explanation
Indices: 60571484--60571658 Score: 235
Period size: 88 Copynumber: 2.0 Consensus size: 88
60571474 GTGAAACTTC
* * * *
60571484 AGCCTTATCTCCCTGAGCAGCAGTGGAATAGGCTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAATAGGCTGAAAATAGCAGATCTTGCCTTCCTGTACTAG
*
60571549 CAGCGAAGTAGATCGAAGATACT
66 CAGCGAAGCAGATCGAAGATACT
* * * * *
60571572 AGCCTTGTCTCCCTGGGTAGCAGTGGAGTAGGTTGAAAAT-GACAGATCTTGCCTTCCTGTACTA
1 AGCCTTATCTCCCTGAGCAGCAGTGGAATAGGCTGAAAATAG-CAGATCTTGCCTTCCTGTACTA
*
60571636 GCGGCGAAGCAGATCGAAGATAC
65 GCAGCGAAGCAGATCGAAGATAC
60571659 CCGTCTTATC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
87 1 0.01
88 74 0.99
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (88 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAATAGGCTGAAAATAGCAGATCTTGCCTTCCTGTACTAG
CAGCGAAGCAGATCGAAGATACT
Found at i:60572065 original size:101 final size:100
Alignment explanation
Indices: 60571858--60572120 Score: 350
Period size: 101 Copynumber: 2.6 Consensus size: 100
60571848 CAGTGGAATG
*
60571858 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAT
1 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAC
* *
60571923 GGCGGATCTGATTTCTCCAACATTGCAATTAAAAA
66 AGCAGATCTGATTTCTCCAACATTGCAATTAAAAA
* *
60571958 GATTGAAGCCACAACAGCGAATCTTACTTCCTTGGCGGTGTAGTAGGAACAGATTGAAG-CTACG
1 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGT-GGAACAGATTGAAGTC-ACG
* * *
60572022 ACAGCAGATCTGGTTTC-CCTGACATTGTAATTAAAAA
64 ACAGCAGATCTGATTTCTCC-AACATTGCAATTAAAAA
* ** * * **
60572059 GATTGAAGCCACAACGGCGGATCTTACTTTTCTAGCAGTACAGTGGAACAGATTGAAGTCAC
1 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCAC
60572121 AACGGCGAAT
Statistics
Matches: 142, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
100 61 0.43
101 81 0.57
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (100 bp):
GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAC
AGCAGATCTGATTTCTCCAACATTGCAATTAAAAA
Found at i:60572165 original size:100 final size:100
Alignment explanation
Indices: 60571858--60572156 Score: 349
Period size: 100 Copynumber: 3.0 Consensus size: 100
60571848 CAGTGGAATG
* *
60571858 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAT
1 GATTGAAGCCACAACGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAC
* *
60571923 GGCGGATC-TGATTT-CTCCAACATTGCAATTAAAAA
66 GGCGAATCTTG-TTTCCT-CGACATTGCAATTAAAAA
*
60571958 GATTGAAGCCACAACAGCGAATCTTAC-TTCCTTGGCGGTGTAGTAGGAACAGATTGAAG-CTAC
1 GATTGAAGCCACAACGGCGAATCTTACTTTCC-TGGCGGTGTAGT-GGAACAGATTGAAGTC-AC
* * *
60572021 GACAGC-AGATCTGGTTTCC-CTGACATTGTAATTAAAAA
63 GACGGCGA-ATCTTGTTTCCTC-GACATTGCAATTAAAAA
* * * * ** *
60572059 GATTGAAGCCACAACGGCGGATCTTACTTTTCTAGCAGTACAGTGGAACAGATTGAAGTCACAAC
1 GATTGAAGCCACAACGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAC
*
60572124 GGCGAATCTTGTTTCCTCGACATTGCAGTTAAA
66 GGCGAATCTTGTTTCCTCGACATTGCAATTAAA
60572157 CAATTTGAAA
Statistics
Matches: 168, Mismatches: 20, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
99 3 0.02
100 83 0.49
101 77 0.46
102 5 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
GATTGAAGCCACAACGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGTCACGAC
GGCGAATCTTGTTTCCTCGACATTGCAATTAAAAA
Found at i:60572343 original size:44 final size:41
Alignment explanation
Indices: 60572182--60572363 Score: 127
Period size: 44 Copynumber: 4.2 Consensus size: 41
60572172 TATCTCCCTA
* * *
60572182 AAGTTGCAGTGGAGCGGATTAAAATCATAGATCTTATCTCTCTG
1 AAGTTGCAGTGGAGCAGA-TAAAAT-ATA-ATCCTATCTCTCCG
* *** * *
60572226 AAGTTGCAG-AGAGCAGATCGCATATAGTCTTATCT-TCCTG
1 AAGTTGCAGTGGAGCAGATAAAATATAATCCTATCTCTCC-G
* * *
60572266 AAATTGCAGTGGAGCAGACAGAAGAAACTAATCCTATCTCTCCG
1 AAGTTGCAGTGGAGCAGATA-AA-ATA-TAATCCTATCTCTCCG
*
60572310 AAGTTGCAGTGGAGCAGATTAAAATGATGAATCCTATAC-CTCTG
1 AAGTTGCAGTGGAGCAGA-TAAAAT-AT-AATCCTAT-CTCTCCG
60572354 AAGTTGCAGT
1 AAGTTGCAGT
60572364 AGGTCGGATT
Statistics
Matches: 108, Mismatches: 20, Indels: 20
0.73 0.14 0.14
Matches are distributed among these distances:
39 2 0.02
40 17 0.16
41 10 0.09
42 3 0.03
43 10 0.09
44 61 0.56
45 5 0.05
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (41 bp):
AAGTTGCAGTGGAGCAGATAAAATATAATCCTATCTCTCCG
Found at i:60573320 original size:3 final size:3
Alignment explanation
Indices: 60573312--60573365 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
60573302 TGTTAAATTG
* **
60573312 TTA TTA TTA CTGTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA TGG TTA
1 TTA TTA TTA -T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
60573360 TTA TTA
1 TTA TTA
60573366 CCATTTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 36 0.86
4 4 0.10
5 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:60573535 original size:18 final size:18
Alignment explanation
Indices: 60573498--60573531 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60573488 TACATATATT
*
60573498 TACGTTTTATAATATTTA
1 TACGTTTTACAATATTTA
60573516 TACGTTTT-CAATATTT
1 TACGTTTTACAATATTT
60573532 TATAATCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (18 bp):
TACGTTTTACAATATTTA
Found at i:60576177 original size:15 final size:13
Alignment explanation
Indices: 60576139--60576170 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60576129 ATGTTTAAGA
*
60576139 TTTTAAAATTAAT
1 TTTTAAAAATAAT
60576152 TTTTAAAAATAAT
1 TTTTAAAAATAAT
60576165 TTTTAA
1 TTTTAA
60576171 GAAAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTTAAAAATAAT
Found at i:60578285 original size:24 final size:24
Alignment explanation
Indices: 60578258--60578314 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
60578248 AAACCTAATT
60578258 CTAATCAAA-GCCAAATATATTATG
1 CTAAT-AAATGCCAAATATATTATG
*
60578282 CTAATAAATGCTAAATATATTATG
1 CTAATAAATGCCAAATATATTATG
*
60578306 CTCATAAAT
1 CTAATAAAT
60578315 ACTAAATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.33
Consensus pattern (24 bp):
CTAATAAATGCCAAATATATTATG
Found at i:60578319 original size:24 final size:24
Alignment explanation
Indices: 60578270--60578321 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
60578260 AATCAAAGCC
*
60578270 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATACT
*
60578294 AAATATATTATGCTCATAAATACT
1 AAATATATTATGCTAATAAATACT
60578318 AAAT
1 AAAT
60578322 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATACT
Found at i:60579796 original size:42 final size:42
Alignment explanation
Indices: 60579732--60579815 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
60579722 CCACAATACC
* * *
60579732 AAGCAAAGCTCGAATCGGACTATGCTTCACAACTGGGGAGAA
1 AAGCAAAGCTCGAATCGAACTATGCTTCAAAACTGAGGAGAA
60579774 AAGCAAAGCTCGAATCGAACTATGCTTCAAAACTGAGGAGAA
1 AAGCAAAGCTCGAATCGAACTATGCTTCAAAACTGAGGAGAA
60579816 CACATCTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (42 bp):
AAGCAAAGCTCGAATCGAACTATGCTTCAAAACTGAGGAGAA
Found at i:60582576 original size:24 final size:24
Alignment explanation
Indices: 60582549--60582600 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
60582539 AATCAAAGTC
* *
60582549 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
60582573 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
60582597 AAAT
1 AAAT
60582601 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:60585702 original size:85 final size:85
Alignment explanation
Indices: 60585626--60585792 Score: 244
Period size: 85 Copynumber: 2.0 Consensus size: 85
60585616 AAATGCGTTT
* * * * *
60585626 AATTGGGCATGCTCTCCTTGACATGTTATCAGAAAAGCTTTTCTAGCTGGACGCGCTTTTACACT
1 AATTGGGCATGCTCTCCTTGACATGTCATCAGAAAAGCTCTTCCAGCTGGACACGCTTTCACACT
60585691 ACTGTGAAGAAAACGCATCC
66 ACTGTGAAGAAAACGCATCC
* * * *
60585711 AATTGGGCATGCTCTCCTTGACATGTCATCAGGAAAGCTCTTCCAGTTTGACATGCTTTCACACT
1 AATTGGGCATGCTCTCCTTGACATGTCATCAGAAAAGCTCTTCCAGCTGGACACGCTTTCACACT
*
60585776 ACTGTGAAGAAAGCGCA
66 ACTGTGAAGAAAACGCA
60585793 CCCAGCTAGT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (85 bp):
AATTGGGCATGCTCTCCTTGACATGTCATCAGAAAAGCTCTTCCAGCTGGACACGCTTTCACACT
ACTGTGAAGAAAACGCATCC
Found at i:60588645 original size:16 final size:16
Alignment explanation
Indices: 60588612--60588645 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60588602 GTCATCTGTT
* *
60588612 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
60588628 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
60588644 AA
1 AA
60588646 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:60589355 original size:21 final size:21
Alignment explanation
Indices: 60589329--60589369 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
60589319 ATCTGCTCAA
*
60589329 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
60589350 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
60589370 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:60591943 original size:16 final size:16
Alignment explanation
Indices: 60591910--60591943 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60591900 GGAGATTGTT
* *
60591910 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
60591926 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
60591942 AA
1 AA
60591944 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:60592647 original size:19 final size:17
Alignment explanation
Indices: 60592602--60592647 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
60592592 CCGTCTCTTA
60592602 TTTTTATATTTTAATAT
1 TTTTTATATTTTAATAT
60592619 TTTCTGTATATGTTTATATAT
1 TTT-T-TATAT-TTTA-ATAT
60592640 TTTTTATA
1 TTTTTATA
60592648 ATTCTACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.12
18 1 0.04
19 9 0.36
20 5 0.20
21 7 0.28
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (17 bp):
TTTTTATATTTTAATAT
Found at i:60597614 original size:21 final size:21
Alignment explanation
Indices: 60597590--60597630 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60597580 CCTTCTCTGG
* *
60597590 TTTTATTCTTATGTAAAATTA
1 TTTTAGTCTGATGTAAAATTA
*
60597611 TTTTAGTCTGATTTAAAATT
1 TTTTAGTCTGATGTAAAATT
60597631 TACAACAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTAGTCTGATGTAAAATTA
Found at i:60603960 original size:36 final size:36
Alignment explanation
Indices: 60603913--60603984 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
60603903 GAGTGAGACA
* *
60603913 TTGAATTTGATGGAAAATGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
* *
60603949 TTGAATGTGATGGGATAGGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
60603985 GCGTATTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.43, T:0.32
Consensus pattern (36 bp):
TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
Found at i:60608702 original size:15 final size:15
Alignment explanation
Indices: 60608675--60608708 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60608665 TAAATTAAAT
*
60608675 TCGAGTCGAGTCGGG
1 TCGAGTCGGGTCGGG
*
60608690 TCGGGTCGGGTCGGG
1 TCGAGTCGGGTCGGG
60608705 TCGA
1 TCGA
60608709 AATTAGGTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.21, G:0.50, T:0.21
Consensus pattern (15 bp):
TCGAGTCGGGTCGGG
Found at i:60610456 original size:16 final size:16
Alignment explanation
Indices: 60610435--60610465 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60610425 CCTTTAGGGT
60610435 TCTTTAGTTTTTTTAA
1 TCTTTAGTTTTTTTAA
*
60610451 TCTTTATTTTTTTTA
1 TCTTTAGTTTTTTTA
60610466 GAAAATGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.74
Consensus pattern (16 bp):
TCTTTAGTTTTTTTAA
Found at i:60611223 original size:2 final size:2
Alignment explanation
Indices: 60611216--60611246 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60611206 TTTAGATCTT
*
60611216 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60611247 TCGTTTGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60614042 original size:15 final size:15
Alignment explanation
Indices: 60614012--60614051 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
60614002 AGTGTTTGTA
*
60614012 TTTTAAT-TTAATAT
1 TTTTAATATTTATAT
60614026 TTTTAATATTTATAT
1 TTTTAATATTTATAT
*
60614041 TTTTAAAATTT
1 TTTTAATATTT
60614052 TAGTTATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTAATATTTATAT
Found at i:60615463 original size:21 final size:21
Alignment explanation
Indices: 60615433--60615477 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
60615423 TTGCCCCTAG
*
60615433 CATGTCACACCTTGAAACCAA
1 CATGTAACACCTTGAAACCAA
60615454 CATGTAACACCTTGAAACCAA
1 CATGTAACACCTTGAAACCAA
60615475 CAT
1 CAT
60615478 ATCACATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.31, G:0.09, T:0.20
Consensus pattern (21 bp):
CATGTAACACCTTGAAACCAA
Found at i:60616373 original size:31 final size:32
Alignment explanation
Indices: 60616314--60616378 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
60616304 GGCAAATTGC
60616314 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
60616346 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
60616377 AA
1 AA
60616379 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:60621747 original size:12 final size:12
Alignment explanation
Indices: 60621730--60621768 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
60621720 GGTAGGCAAC
*
60621730 TTTTTTTACGCT
1 TTTTTTTGCGCT
60621742 TTTTTTTGCGC-
1 TTTTTTTGCGCT
60621753 TTTTTTTGCGCT
1 TTTTTTTGCGCT
60621765 TTTT
1 TTTT
60621769 GCTTCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.03, C:0.15, G:0.13, T:0.69
Consensus pattern (12 bp):
TTTTTTTGCGCT
Found at i:60621756 original size:10 final size:11
Alignment explanation
Indices: 60621729--60621768 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
60621719 AGGTAGGCAA
*
60621729 CTTTTTTTACG
1 CTTTTTTTGCG
60621740 CTTTTTTTTGCG
1 C-TTTTTTTGCG
60621752 CTTTTTTTGCG
1 CTTTTTTTGCG
60621763 CTTTTT
1 CTTTTT
60621769 GCTTCTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.03, C:0.17, G:0.12, T:0.68
Consensus pattern (11 bp):
CTTTTTTTGCG
Found at i:60621798 original size:15 final size:14
Alignment explanation
Indices: 60621764--60621797 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60621754 TTTTTTGCGC
*
60621764 TTTTTGCTTCTTCT
1 TTTTTTCTTCTTCT
*
60621778 TTTTTTCTTTTTCT
1 TTTTTTCTTCTTCT
60621792 TTTTTT
1 TTTTTT
60621798 TTTGCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTCTTCT
Found at i:60622409 original size:31 final size:32
Alignment explanation
Indices: 60622350--60622414 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
60622340 GGCAAATTAC
*
60622350 AAGAGTGATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
60622382 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
60622413 AA
1 AA
60622415 ATTATCTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 13 0.41
32 19 0.59
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:60630766 original size:13 final size:14
Alignment explanation
Indices: 60630745--60630777 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
60630735 CTCTGAACCC
60630745 CGAACCTTGAA-CT
1 CGAACCTTGAATCT
*
60630758 CGAATCTTGAATCT
1 CGAACCTTGAATCT
60630772 CGAACC
1 CGAACC
60630778 CCAAAGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (14 bp):
CGAACCTTGAATCT
Found at i:60630887 original size:14 final size:15
Alignment explanation
Indices: 60630856--60630909 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
60630846 CAAGGTTTAA
* *
60630856 GTTTAGGGTTCAAGG
1 GTTTGGGGTTTAAGG
60630871 GTTTGGGGTTT-AGG
1 GTTTGGGGTTTAAGG
** *
60630885 GTTTAAGATTTAAGG
1 GTTTGGGGTTTAAGG
60630900 GTTTGGGGTT
1 GTTTGGGGTT
60630910 CGGAGTTCAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.17, C:0.02, G:0.41, T:0.41
Consensus pattern (15 bp):
GTTTGGGGTTTAAGG
Found at i:60630928 original size:29 final size:29
Alignment explanation
Indices: 60630862--60630930 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
60630852 TTAAGTTTAG
*
60630862 GGTTCAAGGGTTTGGGGTTTAGGGTTTAA
1 GGTTCAAGGGTTTGGGGTTTAGGGTTCAA
* * *
60630891 GATTTAAGGGTTTGGGG-TTCGGAGTTCAA
1 GGTTCAAGGGTTTGGGGTTTAGG-GTTCAA
60630920 GGTTCAAGGGT
1 GGTTCAAGGGT
60630931 ATAAGATTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.19, C:0.06, G:0.41, T:0.35
Consensus pattern (29 bp):
GGTTCAAGGGTTTGGGGTTTAGGGTTCAA
Found at i:60635630 original size:14 final size:14
Alignment explanation
Indices: 60635613--60635641 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
60635603 AATATCAAAT
60635613 TAATAAGAGATAAA
1 TAATAAGAGATAAA
60635627 TAATAAGAGATAAA
1 TAATAAGAGATAAA
60635641 T
1 T
60635642 TATATCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (14 bp):
TAATAAGAGATAAA
Found at i:60636478 original size:271 final size:271
Alignment explanation
Indices: 60635980--60636522 Score: 946
Period size: 271 Copynumber: 2.0 Consensus size: 271
60635970 TGAAGAAAAG
*
60635980 AGATCCGAAACCGTTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
1 AGATCCGAAACCATTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
60636045 TGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
66 TGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
*
60636110 GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGACGTCGAATTTCCAAGTCAATATTTTAC
131 GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGAAGTCGAATTTCCAAGTCAATATTTTAC
* * * * *
60636175 TCGAAATTTGTGTGTACAAATTTCTGGCACACCTAGTAAGACAATCTTTGTCTTTTATCTTTTCT
196 TCGAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTTCT
60636240 CTTGAAAGTCA
261 CTTGAAAGTCA
*
60636251 AGATCC-AAACCCATTTTAAGAGCAAGTTGTCATGACACTTGAAGCAATCCAAGTCAGATGACCC
1 AGATCCGAAA-CCATTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCC
60636315 TTGGATCAAAGTTAAATC-GAAGAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTT
65 TTGGATCAAAGTTAAATCGGAA-AGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTT
* * *
60636379 AAGAGATTGTAACTTTCTTTCAAGTTATCAATAAATTTGAATTTGAATTTCCAAGTCAATATTTT
129 AAGAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGAAGTCGAATTTCCAAGTCAATATTTT
*
60636444 ACTCGAAATTTGTGTGTACAAATTTCTCGCACACCCAATAGGACAATCTTTATCTTTCATCTTTT
194 ACTCGAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTT
60636509 CTCTTGAAAGTCA
259 CTCTTGAAAGTCA
60636522 A
1 A
60636523 AATTCAAAGT
Statistics
Matches: 258, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
270 6 0.02
271 252 0.98
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (271 bp):
AGATCCGAAACCATTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
TGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGAAGTCGAATTTCCAAGTCAATATTTTAC
TCGAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTTCT
CTTGAAAGTCA
Found at i:60650522 original size:16 final size:15
Alignment explanation
Indices: 60650496--60650530 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
60650486 TTACATGTTT
60650496 TGTTCAATTAACTTC
1 TGTTCAATTAACTTC
*
60650511 TGTTCTAATTAACTTT
1 TGTTC-AATTAACTTC
60650527 TGTT
1 TGTT
60650531 TTGTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (15 bp):
TGTTCAATTAACTTC
Found at i:60650998 original size:23 final size:24
Alignment explanation
Indices: 60650968--60651030 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
60650958 TTGTGTTTCT
* *
60650968 TAATATTTATATTATTT-TTAATC
1 TAATATTTATATTATTTAATAATA
* *
60650991 TAATATTTA-ATAATTTAATATTA
1 TAATATTTATATTATTTAATAATA
60651014 TAATATTATATATTATT
1 TAATATT-TATATTATT
60651031 ATAGATTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 6 0.19
23 19 0.59
24 2 0.06
25 5 0.16
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TAATATTTATATTATTTAATAATA
Found at i:60651009 original size:15 final size:16
Alignment explanation
Indices: 60650986--60651018 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
60650976 ATATTATTTT
60650986 TAATCTAATATT-TAA
1 TAATCTAATATTATAA
*
60651001 TAATTTAATATTATAA
1 TAATCTAATATTATAA
60651017 TA
1 TA
60651019 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATCTAATATTATAA
Found at i:60656213 original size:19 final size:20
Alignment explanation
Indices: 60656171--60656214 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
60656161 ATAATAAGTA
* *
60656171 ATATATAATGTATTACTATT
1 ATATATAATCTATTACTATG
*
60656191 ATATATAA-CTATTATTATG
1 ATATATAATCTATTACTATG
60656210 ATATA
1 ATATA
60656215 GATTATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
ATATATAATCTATTACTATG
Found at i:60656684 original size:5 final size:5
Alignment explanation
Indices: 60656674--60656702 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
60656664 AACTATTAAT
60656674 ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATAT
60656703 AACATTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:60657110 original size:19 final size:19
Alignment explanation
Indices: 60657083--60657122 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
60657073 TGTGATATAG
60657083 TATTATATAATGAATAATA
1 TATTATATAATGAATAATA
* * *
60657102 TATTTTATAATTATTAATA
1 TATTATATAATGAATAATA
60657121 TA
1 TA
60657123 ATAACTACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTATATAATGAATAATA
Found at i:60663498 original size:39 final size:39
Alignment explanation
Indices: 60663455--60663532 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
60663445 TGTGATGATG
*
60663455 AAGAAAGGGATTATGTTTGTGATGCCTTCGGTAGGGCAA
1 AAGAAAGGGATTAGGTTTGTGATGCCTTCGGTAGGGCAA
60663494 AAGAAAGGGATTAGGTTTGTGATGCCTTCGGTAGGGCAA
1 AAGAAAGGGATTAGGTTTGTGATGCCTTCGGTAGGGCAA
60663533 CTATATTACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.10, G:0.35, T:0.27
Consensus pattern (39 bp):
AAGAAAGGGATTAGGTTTGTGATGCCTTCGGTAGGGCAA
Found at i:60666210 original size:32 final size:32
Alignment explanation
Indices: 60666174--60666239 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
60666164 TGAATTCATT
*
60666174 TTCCCGACCTAACCCAGAATATGAATAAAAAA
1 TTCCCAACCTAACCCAGAATATGAATAAAAAA
60666206 TTCCCAACCTAACCCAGAATATGAATAAAAAA
1 TTCCCAACCTAACCCAGAATATGAATAAAAAA
60666238 TT
1 TT
60666240 ATCGAAGTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.21
Consensus pattern (32 bp):
TTCCCAACCTAACCCAGAATATGAATAAAAAA
Found at i:60668481 original size:85 final size:88
Alignment explanation
Indices: 60668312--60668481 Score: 238
Period size: 85 Copynumber: 1.9 Consensus size: 88
60668302 AGGGTGTAAA
* * * * *
60668312 AAGCCTTCAAACTTTTTCAAAAAAAAATAATTAAGCCCCTACTTTTTTTTTTTTGCATTCATTTG
1 AAGCCCTCAAACCTTTTCAAAAAAAAACAATTAAGCCCCTAC---TTTTTTTTTGCACTCAATTG
60668377 GGTACTTGAACTTTCAAAATATTTTG
63 GGTACTTGAACTTTCAAAATATTTTG
*
60668403 AAGCCCTCAAACCTTTTC-AAAAAAAGCAATTAAGCCCCTAC-TTTTTTTT-CACTCAATTGGGT
1 AAGCCCTCAAACCTTTTCAAAAAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGT
60668465 ACTTGAACTTTCAAAAT
66 ACTTGAACTTTCAAAAT
60668482 GCATCAAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
85 28 0.38
86 8 0.11
90 21 0.29
91 16 0.22
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (88 bp):
AAGCCCTCAAACCTTTTCAAAAAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGT
ACTTGAACTTTCAAAATATTTTG
Found at i:60668515 original size:90 final size:88
Alignment explanation
Indices: 60668309--60668515 Score: 222
Period size: 85 Copynumber: 2.3 Consensus size: 88
60668299 TTAAGGGTGT
* * * * *
60668309 AAAAAGCCTTCAAACTTTTTCAAAAAAAAATAATTAAGCCCCTACTTTTTTTTTTTTGCATTCAT
1 AAAAAACCCTCAAACTTTTTCAAAAAAAAACAATTAAGCCCCTAC---TTTTTTTTTGCACTCAA
*
60668374 TTGGGTACTTGAACTTTCAAAATATT
63 TTGGGTACTTGAACTTTCAAAATATC
*** * * *
60668400 TTGAAGCCCTCAAACCTTTTC-AAAAAAAGCAATTAAGCCCCTAC-TTTTTTTT-CACTCAATTG
1 AAAAAACCCTCAAACTTTTTCAAAAAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTG
60668462 GGTACTTGAACTTTCAAAATGCATC
66 GGTACTTGAACTTTCAAAAT--ATC
60668487 AAAAATACCCTCAAACTTTTTTCAAAAAA
1 AAAAA-ACCCTCAAAC-TTTTTCAAAAAA
60668516 GTAGTTAAGC
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
85 28 0.29
86 8 0.08
87 4 0.04
88 9 0.09
89 5 0.05
90 26 0.27
91 16 0.17
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (88 bp):
AAAAAACCCTCAAACTTTTTCAAAAAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTG
GGTACTTGAACTTTCAAAATATC
Found at i:60668609 original size:26 final size:25
Alignment explanation
Indices: 60668580--60668661 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 25
60668570 CTATAAATAT
*
60668580 TATTAAATTATAATAAAAAATTAAAA
1 TATTAAA-AATAATAAAAAATTAAAA
* * *
60668606 TATTAAAAATTAGAAAATAATAAAAA
1 TATTAAAAATAATAAAA-AATTAAAA
*
60668632 TAATAAAAAATATATAAAAAATATAAAA
1 T-ATTAAAAATA-ATAAAAAAT-TAAAA
60668660 TA
1 TA
60668662 GATAGAAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
25 7 0.16
26 15 0.34
27 12 0.27
28 10 0.23
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (25 bp):
TATTAAAAATAATAAAAAATTAAAA
Found at i:60668631 original size:9 final size:9
Alignment explanation
Indices: 60668589--60668684 Score: 64
Period size: 9 Copynumber: 11.0 Consensus size: 9
60668579 TTATTAAATT
60668589 ATAAT-AAA
1 ATAATAAAA
*
60668597 A-AATTAAA
1 ATAATAAAA
*
60668605 ATATTAAAA
1 ATAATAAAA
60668614 AT--TAGAAA
1 ATAATA-AAA
60668622 ATAATAAAA
1 ATAATAAAA
60668631 ATAATAAAA
1 ATAATAAAA
60668640 A-ATATATAAA
1 ATA-ATA-AAA
60668650 A-AATATAAA
1 ATAATA-AAA
*
60668659 ATAGATAGAA
1 ATA-ATAAAA
60668669 AT-ATAAAA
1 ATAATAAAA
60668677 AT-ATAAAA
1 ATAATAAAA
60668685 TTTTATAAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
7 5 0.07
8 24 0.32
9 31 0.41
10 12 0.16
11 3 0.04
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (9 bp):
ATAATAAAA
Found at i:60668640 original size:18 final size:18
Alignment explanation
Indices: 60668589--60668684 Score: 64
Period size: 17 Copynumber: 5.5 Consensus size: 18
60668579 TTATTAAATT
*
60668589 ATAAT-AAAA-AATTAAA
1 ATAATAAAAATAATAAAA
*
60668605 ATATTAAAAAT--TAGAAA
1 ATAATAAAAATAATA-AAA
60668622 ATAATAAAAATAATAAAA
1 ATAATAAAAATAATAAAA
60668640 A-ATATATAAAA-AATATAAA
1 ATA-ATA-AAAATAATA-AAA
*
60668659 ATAGATAGAAAT-ATAAAA
1 ATA-ATAAAAATAATAAAA
60668677 AT-ATAAAA
1 ATAATAAAA
60668685 TTTTATAAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
16 10 0.16
17 18 0.28
18 16 0.25
19 16 0.25
20 4 0.06
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (18 bp):
ATAATAAAAATAATAAAA
Found at i:60668671 original size:38 final size:35
Alignment explanation
Indices: 60668595--60668681 Score: 99
Period size: 36 Copynumber: 2.5 Consensus size: 35
60668585 AATTATAATA
*
60668595 AAAAAT-T-AAAATAT-TAAAAATTAGAAAATAAT
1 AAAAATATAAAAATATATAAAAAATAGAAAATAAT
*
60668627 AAAAATAATAAAAAATATATAAAAAATATAAAATAGAT
1 AAAAAT-AT-AAAAATATATAAAAAATAGAAAATA-AT
*
60668665 AGAAATATAAAAATATA
1 AAAAATATAAAAATATA
60668682 AAATTTTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
32 6 0.13
34 1 0.02
36 16 0.35
37 16 0.35
38 7 0.15
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (35 bp):
AAAAATATAAAAATATATAAAAAATAGAAAATAAT
Found at i:60668678 original size:8 final size:8
Alignment explanation
Indices: 60668592--60668684 Score: 64
Period size: 8 Copynumber: 10.8 Consensus size: 8
60668582 TTAAATTATA
60668592 ATAAAAA-
1 ATAAAAAT
*
60668599 ATTAAAAT
1 ATAAAAAT
60668607 ATTAAAAAT
1 A-TAAAAAT
60668616 -TAGAAAAT
1 ATA-AAAAT
60668624 AATAAAAAT
1 -ATAAAAAT
60668633 AATAAAAAATAT
1 -AT--AAAA-AT
60668645 ATAAAAAAT
1 AT-AAAAAT
*
60668654 ATAAAATAG
1 ATAAAA-AT
*
60668663 ATAGAAAT
1 ATAAAAAT
60668671 ATAAAAAT
1 ATAAAAAT
60668679 ATAAAA
1 ATAAAA
60668685 TTTTATAAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
7 8 0.11
8 24 0.34
9 24 0.34
10 7 0.10
11 6 0.08
12 2 0.03
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (8 bp):
ATAAAAAT
Found at i:60668678 original size:72 final size:71
Alignment explanation
Indices: 60668534--60668684 Score: 157
Period size: 72 Copynumber: 2.1 Consensus size: 71
60668524 GCCATGCTTT
* * * *
60668534 TATTAAAAATTAGAAAAAAATTAAAATCAATAAAAGCTATAAATATTATTAAATTATAATAAAAA
1 TATTAAAAATTAGAAAAAAATAAAAATCAATAAAAGATATAAAAAATATTAAA-TATAATAAAAA
*
60668599 ATTAAAA
65 ATAAAAA
* *
60668606 TATTAAAAATTAGAAAATAATAAAAAT-AATAAAAAATATATAAAAA-ATATAAA-ATAGATAGA
1 TATTAAAAATTAGAAAAAAATAAAAATCAATAAAAGATATA-AAAAATAT-TAAATATA-ATA-A
*
60668668 AATATAAAAA
62 AAAATAAAAA
60668678 TA-TAAAA
1 TATTAAAA
60668685 TTTTATAAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
70 3 0.04
71 21 0.31
72 43 0.64
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (71 bp):
TATTAAAAATTAGAAAAAAATAAAAATCAATAAAAGATATAAAAAATATTAAATATAATAAAAAA
TAAAAA
Found at i:60668997 original size:19 final size:19
Alignment explanation
Indices: 60668945--60669007 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
60668935 AAAATCTAAT
*
60668945 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAAATTTTAATAA
*
60668965 TTTTTCTAAATTTTAATAA
1 TTTTTATAAATTTTAATAA
* **
60668984 TTTTTATAATTTTTTCTAA
1 TTTTTATAAATTTTAATAA
60669003 TTTTT
1 TTTTT
60669008 GCTTTTTTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 32 0.86
20 5 0.14
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTATAAATTTTAATAA
Found at i:60669204 original size:87 final size:88
Alignment explanation
Indices: 60669010--60669188 Score: 260
Period size: 87 Copynumber: 2.1 Consensus size: 88
60669000 TAATTTTTGC
* *
60669010 TTTTTTGAA-AATTTTTGAGGGTCATTTTAATGCATTTTGAAAGTTCAAGTATCTAATTGAGTGA
1 TTTTTTGAAGAA-ATTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGTATCTAATTGAGTGA
60669074 AAAAAAAAGTAGGGGCTTAATTAT
65 AAAAAAAAGTAGGGGCTTAATTAT
* *
60669098 TTTTTTGAAGAAATTTGAGGGTC-TTTTGATGTATTTTGAAACTTCAAGTGATC-AATTGAGT-A
1 TTTTTTGAAGAAATTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGT-ATCTAATTGAGTGA
60669160 AAAAAAAAG-AGGGGCTTAATTGAT
65 AAAAAAAAGTAGGGGCTTAATT-AT
60669184 TTTTT
1 TTTTT
60669189 ATTAAAAAGT
Statistics
Matches: 84, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
85 12 0.14
86 17 0.20
87 31 0.37
88 22 0.26
89 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (88 bp):
TTTTTTGAAGAAATTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGTATCTAATTGAGTGAA
AAAAAAAGTAGGGGCTTAATTAT
Found at i:60677358 original size:77 final size:76
Alignment explanation
Indices: 60677211--60677358 Score: 174
Period size: 77 Copynumber: 1.9 Consensus size: 76
60677201 TTCAGCTATA
* * *
60677211 TTTGATGTTATACTTTTTGTGCAAACATTTTCCCTGATTGTTTTGTAAATAAAATGAAAACTTAA
1 TTTGATGTTAGACTTTTTGTGCAAACAATTTCCCTGATTGTTTTGTAAAGAAAATGAAAACTTAA
60677276 ACTCTTCTGTG
66 ACTCTTCTGTG
* ** * *
60677287 TTTGATGTTAGATTTTTTGTGCAAACAAAATTT-CCTGGATTG-TTTGTACGGGAAATGAGAACT
1 TTTGATGTTAGACTTTTTGTGCAAAC--AATTTCCCT-GATTGTTTTGTAAAGAAAATGAAAACT
*
60677350 TGAACTCTT
63 TAAACTCTT
60677359 ATTCTTTTCC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
76 24 0.40
77 27 0.45
78 9 0.15
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (76 bp):
TTTGATGTTAGACTTTTTGTGCAAACAATTTCCCTGATTGTTTTGTAAAGAAAATGAAAACTTAA
ACTCTTCTGTG
Found at i:60680609 original size:18 final size:18
Alignment explanation
Indices: 60680586--60680620 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60680576 AGCAGCAGCA
*
60680586 GAACCTGTTAAAGAATCT
1 GAACCTGATAAAGAATCT
*
60680604 GAACCTGATGAAGAATC
1 GAACCTGATAAAGAATC
60680621 AGAGCCTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (18 bp):
GAACCTGATAAAGAATCT
Found at i:60681897 original size:3 final size:3
Alignment explanation
Indices: 60681889--60681931 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
60681879 GTAAGATATA
60681889 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG ATGG -GG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG -TGG TGG TGG T
60681932 AGAGGTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.02, C:0.00, G:0.65, T:0.33
Consensus pattern (3 bp):
TGG
Found at i:60700698 original size:16 final size:19
Alignment explanation
Indices: 60700672--60700709 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
60700662 TTAGACCCAC
60700672 TTTTATTATTTT-TTTA-A
1 TTTTATTATTTTATTTATA
60700689 TTTT-TTATTTTATTTATA
1 TTTTATTATTTTATTTATA
60700707 TTT
1 TTT
60700710 AGTATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 8 0.42
18 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATTATTTTATTTATA
Found at i:60704797 original size:27 final size:24
Alignment explanation
Indices: 60704759--60704809 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 24
60704749 ATTTTTTAGC
60704759 ATCAACAAATTTAGTAAATTATATATT
1 ATCAACAAATTT--TAAATTA-ATATT
*
60704786 ATCAACTAATTTTAAATTAATATT
1 ATCAACAAATTTTAAATTAATATT
60704810 TAATATGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 5 0.22
25 7 0.30
27 11 0.48
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (24 bp):
ATCAACAAATTTTAAATTAATATT
Found at i:60709085 original size:30 final size:30
Alignment explanation
Indices: 60709017--60709085 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
60709007 AATTTAGCAA
*
60709017 AAAACTCTAAAATTTCTCCCTAAATTTCTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
*
60709047 AAAACTCTCAAATTTCTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
*
60709077 AAAGCTCTC
1 AAAACTCTC
60709086 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.35, C:0.28, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:60710864 original size:18 final size:18
Alignment explanation
Indices: 60710841--60710882 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
60710831 GCCAAGTGCA
* *
60710841 TATCCTAGCCCTTATATG
1 TATCCTAACCATTATATG
60710859 TATCCTAACCATTATATG
1 TATCCTAACCATTATATG
*
60710877 TTTCCT
1 TATCCT
60710883 CTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCATTATATG
Found at i:60714533 original size:125 final size:126
Alignment explanation
Indices: 60714219--60714738 Score: 787
Period size: 126 Copynumber: 4.1 Consensus size: 126
60714209 GGCCAAACAT
* *
60714219 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATACATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGCATC
* *
60714284 CTACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
* *
60714345 GAACTACTGTAGAAAAATAGCGTCCACGTGGGAGCTTTTTTCA-TAAATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAATGCAT
* * * *
60714409 CCTGCTTGAAGCGTTTTTGACACTGTTTGTTCAGAAACGTCTTCTCAAAA-AATTTTTTTAG
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
** *
60714470 GAACTACTGTAGAAAAAGAGAATCCACGTGGGAGCTTTTTTCATTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGCATC
* * *
60714535 ATGTTTGAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAA
* * *
60714596 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-TTCTTTTCAGTAATATTGTTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTT-TTTTCAGTAATTTTGCTGACAATGCAT
* * *
60714660 CCTGCTTGAAGCGTTTTTGACACTAATTGTTCAGAATCGTCTTCTCAAAATTATTTTCTCAA
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
60714722 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
60714739 AAACCAAAAT
Statistics
Matches: 357, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
124 3 0.01
125 112 0.31
126 240 0.67
127 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
Found at i:60714662 original size:251 final size:252
Alignment explanation
Indices: 60714219--60714738 Score: 805
Period size: 251 Copynumber: 2.1 Consensus size: 252
60714209 GGCCAAACAT
** *
60714219 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATACATC
1 GAACTACTGTAGAAAAAGAGAATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATACATC
*
60714284 CTACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAAC
66 ATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAAC
* *
60714349 TACTGTAGAAAAATAGCGTCCACGTGGGAGCTTTTTTCATAAATTTTGCTGACAGTGCATCCTGC
131 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAAATATTGCTGACAGTGCATCCTGC
** * * *
60714414 TTGAAGCGTTTTTGACACTGTTTGTTCAGAAACGTCTTCTCAAAA-AATTTTTTTAG
196 TTGAAGCGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATAATTTTCTCAA
* *
60714470 GAACTACTGTAGAAAAAGAGAATCCACGTGGGAGCTTTTTTCATTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGAATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATACATC
** * *
60714535 ATGTTTGAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAGGAA
66 ATACTTGAAGCATTTTTGACACTATTTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAAGAA
*
60714599 CTACTGTAGAAAAAGAGCGTCCACGTGGGAG-TTCTTTTCAGT-AATATTGTTGACAGTGCATCC
130 CTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTT-TTTTCA-TAAATATTGCTGACAGTGCATCC
* *
60714662 TGCTTGAAGCGTTTTTGACACTAATTGTTCAGAATCGTCTTCTCAAAATTATTTTCTCAA
193 TGCTTGAAGCGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATAATTTTCTCAA
60714722 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
60714739 AAACCAAAAT
Statistics
Matches: 245, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
250 5 0.02
251 215 0.88
252 25 0.10
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (252 bp):
GAACTACTGTAGAAAAAGAGAATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATACATC
ATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAAC
TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAAATATTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATAATTTTCTCAA
Found at i:60714842 original size:34 final size:33
Alignment explanation
Indices: 60714800--60714911 Score: 127
Period size: 34 Copynumber: 3.4 Consensus size: 33
60714790 CACAATATTT
*
60714800 TTTTTTAAAAAAACTAAACTCAAATTTAATTAA
1 TTTTTTAAAAAAACTAAACCCAAATTTAATTAA
* * *
60714833 TTTTCTTAAAAACACTAAACCCAAGTTTAATTTA
1 TTTT-TTAAAAAAACTAAACCCAAATTTAATTAA
*** *
60714867 TTTATTTAAAACCCCTAAACCCTAATTTAATTAA
1 TTT-TTTAAAAAAACTAAACCCAAATTTAATTAA
60714901 -TTTTTAAAAAA
1 TTTTTTAAAAAA
60714912 GAACATTAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
32 7 0.11
33 6 0.09
34 52 0.79
35 1 0.02
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (33 bp):
TTTTTTAAAAAAACTAAACCCAAATTTAATTAA
Found at i:60715041 original size:15 final size:15
Alignment explanation
Indices: 60715017--60715055 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
60715007 TTATTTTAAC
* * *
60715017 AAAACACTAACCCTA
1 AAAACCCTAAACCAA
60715032 AAAACCCTAAACCAA
1 AAAACCCTAAACCAA
60715047 AAAACCCTA
1 AAAACCCTA
60715056 GGGACTAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAACCCTAAACCAA
Found at i:60719515 original size:2 final size:2
Alignment explanation
Indices: 60719504--60719549 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
60719494 GAAGAAGCTT
60719504 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60719545 TA TA T
1 TA TA T
60719550 TCCAAAATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60720018 original size:21 final size:21
Alignment explanation
Indices: 60719989--60720037 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
60719979 TCTAGTTTTA
60719989 ATAAATTTTAAATATTTTTCT
1 ATAAATTTTAAATATTTTTCT
* *
60720010 ATAATTTTTTAATATTTTTCT
1 ATAAATTTTAAATATTTTTCT
*
60720031 ACAAATT
1 ATAAATT
60720038 GATTTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (21 bp):
ATAAATTTTAAATATTTTTCT
Found at i:60721964 original size:20 final size:21
Alignment explanation
Indices: 60721931--60721969 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
60721921 ATTTAATTTT
*
60721931 TTAATTTATCAAAA-AATACC
1 TTAATTAATCAAAATAATACC
*
60721951 TTAATTAATGAAAATAATA
1 TTAATTAATCAAAATAATA
60721970 ATTAGTTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (21 bp):
TTAATTAATCAAAATAATACC
Found at i:60727500 original size:31 final size:29
Alignment explanation
Indices: 60727459--60727522 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 29
60727449 CCCCACTCTC
*
60727459 TTTTTTTTTTATATATATTATCAGGGTAAAA
1 TTTTTCTTTTATATATA-TATCAGGGT-AAA
*
60727490 TTTTTCTTTTATATATATATTAGGGTAAA
1 TTTTTCTTTTATATATATATCAGGGTAAA
60727519 TTTT
1 TTTT
60727523 ATTTATATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 7 0.23
30 8 0.26
31 16 0.52
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.58
Consensus pattern (29 bp):
TTTTTCTTTTATATATATATCAGGGTAAA
Found at i:60727503 original size:29 final size:30
Alignment explanation
Indices: 60727460--60727530 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
60727450 CCCACTCTCT
*
60727460 TTTTTTTTTATATATAT-TATCAGGGTAAAA
1 TTTTTCTTTATATATATATATCAGGGT-AAA
*
60727490 TTTTTCTTT-TATATATATATTAGGGTAAA
1 TTTTTCTTTATATATATATATCAGGGTAAA
*
60727519 -TTTTATTTATAT
1 TTTTTCTTTATAT
60727531 GTTTTCAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.19
29 13 0.36
30 16 0.44
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (30 bp):
TTTTTCTTTATATATATATATCAGGGTAAA
Found at i:60738046 original size:16 final size:16
Alignment explanation
Indices: 60738021--60738063 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
60738011 TTGAATTTTT
60738021 GTTA-TAAGAATATTG
1 GTTATTAAGAATATTG
60738036 GTTATTAAGAATATTG
1 GTTATTAAGAATATTG
*
60738052 ATTATTAAGAAT
1 GTTATTAAGAAT
60738064 TTTATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (16 bp):
GTTATTAAGAATATTG
Found at i:60738090 original size:18 final size:17
Alignment explanation
Indices: 60738062--60738096 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60738052 ATTATTAAGA
*
60738062 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60738079 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60738097 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:60738210 original size:18 final size:17
Alignment explanation
Indices: 60738182--60738216 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60738172 ATTATTAAGA
*
60738182 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60738199 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60738217 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:60738325 original size:147 final size:149
Alignment explanation
Indices: 60738172--60738444 Score: 496
Period size: 147 Copynumber: 1.8 Consensus size: 149
60738162 AAGAATATTG
*
60738172 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
*
60738237 ATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATTTA
66 ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATTTA
60738300 CCAAAACAAATTTTTGCTA
131 CCAAAACAAATTTTTGCTA
60738319 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
* *
60738384 ATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAGTTTAAATAACAATAA
66 ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
60738445 CAATAATCAT
Statistics
Matches: 120, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 89 0.74
148 26 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (149 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTTTGCTA
Found at i:60738357 original size:18 final size:17
Alignment explanation
Indices: 60738329--60738363 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60738319 ATTATTAAGA
*
60738329 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60738346 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60738364 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Done.