Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 206 of 211
Found at i:60738574 original size:44 final size:45
Alignment explanation
Indices: 60738525--60738619 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
60738515 TTACACCTCT
* *
60738525 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
60738569 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
60738614 ATTACA
1 ATTACA
60738620 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:60738619 original size:16 final size:16
Alignment explanation
Indices: 60738598--60738635 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
60738588 TTGATTTGCT
*
60738598 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
60738614 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
60738630 AATACA
1 ATTACA
60738636 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:60741011 original size:286 final size:284
Alignment explanation
Indices: 60740493--60741066 Score: 997
Period size: 286 Copynumber: 2.0 Consensus size: 284
60740483 TTAGTGGATA
*
60740493 CATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAATTAGTGTTGAAATTTATT
1 CATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAATTAGTCTTGAAATTTATT
* * * * *
60740558 TTAACAAATTAGAGTGGTGTAGCGAAAGCGTGGTGGGCCCATAACCCACAGGTCCCAAGATCAAA
66 TTAACAAATCAGAGTGGCGCAGAGAAAGCGAGGTGGGCCCATAACCCACAGGTCCCAAGATCAAA
* *
60740623 ACTTGGCTCTGATAATTTTGAGCAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGGGCT
131 ACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAGCT
60740688 GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACTATATATATTAATATTAATT
196 GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGAC-ATATATATTAATATTAATT
60740753 TGAAAACGAAAAAAAAGTTATAGAT
260 TGAAAACGAAAAAAAAGTTATAGAT
* * *
60740778 GCATTAGAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATTTGT
1 -CATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAATTAGTCTTGAAATTTAT
*
60740843 TTTAACAAATCAGAGTGGCGCAGTAG-AAGCGAGGTGGGCCCATAACCCACAGGTCCCAAGATCG
65 TTTAACAAATCAGAGTGGCGCAG-AGAAAGCGAGGTGGGCCCATAACCCACAGGTCCCAAGATCA
*
60740907 AAACTTGGCTCTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAG
129 AAACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAG
60740972 CTGGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAT
194 CTGGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAT
60741037 TTGAAAACGAAAAAAAAGTTATAGAT
259 TTGAAAACGAAAAAAAAGTTATAGAT
60741063 CATT
1 CATT
60741067 TGGTGAGTAA
Statistics
Matches: 274, Mismatches: 13, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
284 4 0.01
285 44 0.16
286 225 0.82
287 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (284 bp):
CATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAATTAGTCTTGAAATTTATT
TTAACAAATCAGAGTGGCGCAGAGAAAGCGAGGTGGGCCCATAACCCACAGGTCCCAAGATCAAA
ACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAGCT
GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAATTT
GAAAACGAAAAAAAAGTTATAGAT
Found at i:60741957 original size:249 final size:249
Alignment explanation
Indices: 60741512--60742026 Score: 888
Period size: 249 Copynumber: 2.1 Consensus size: 249
60741502 TGTGGGCTGG
*
60741512 CTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGATATATATATTAATATTAATTTGA
1 CTTGATTTTTTAAATTAGAGTTGATGGATAATTAACTTGTGATATATATATTAATATTAATTTGA
*
60741577 AAACGAAAAAAAAAGTTATAGATGCATTAGAATAGTGAAATTTATGTTGTTAAAGAAAACACCTA
66 AAACG-AAAAAAAAGTTATAGATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTA
* * * *
60741642 AATAAGTTAGTCTTGAAATTTATTTTAACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCA
130 AATAAGTTAATCTAGAAATTTATTTTAACAAATCAGAGTGGCGCAACGGAAGAGTGGTGGGCCCA
60741707 TAACCCACAGGTCCCAAGATCAAAACTTGGCTCTGATAATTTTGAGAAATTTTTT
195 TAACCCACAGGTCCCAAGATCAAAACTTGGCTCTGATAATTTTGAGAAATTTTTT
*
60741762 CTTGATTTTTTTAAATTAGAGTTGATGGATAATTAACTTGTGATGTATATATTAATATTAATTTG
1 CTTGA-TTTTTTAAATTAGAGTTGATGGATAATTAACTTGTGATATATATATTAATATTAATTTG
*
60741827 AAAACG-AAAAAAAGTTATAGATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACAGCTA
65 AAAACGAAAAAAAAGTTATAGATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTA
* *
60741891 AATAAGTTAATCTAGAAATTTATTTTAACAGATCAGAGTGGCGCAACGGAAGATTGGTGGGCCCA
130 AATAAGTTAATCTAGAAATTTATTTTAACAAATCAGAGTGGCGCAACGGAAGAGTGGTGGGCCCA
* * *
60741956 TAACCCACAGGTTCCAAGATCGAAACTTGGCTTTGATAATTTTGAGAAATTTTTT
195 TAACCCACAGGTCCCAAGATCAAAACTTGGCTCTGATAATTTTGAGAAATTTTTT
60742011 CTTGATTTTTTAAATT
1 CTTGATTTTTTAAATT
60742027 CTTATCAAAA
Statistics
Matches: 251, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
248 11 0.04
249 172 0.69
250 5 0.02
251 63 0.25
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (249 bp):
CTTGATTTTTTAAATTAGAGTTGATGGATAATTAACTTGTGATATATATATTAATATTAATTTGA
AAACGAAAAAAAAGTTATAGATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAA
ATAAGTTAATCTAGAAATTTATTTTAACAAATCAGAGTGGCGCAACGGAAGAGTGGTGGGCCCAT
AACCCACAGGTCCCAAGATCAAAACTTGGCTCTGATAATTTTGAGAAATTTTTT
Found at i:60742464 original size:328 final size:332
Alignment explanation
Indices: 60741846--60742623 Score: 1359
Period size: 328 Copynumber: 2.3 Consensus size: 332
60741836 AAAAGTTATA
* * *
60741846 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACAGCTAAATAAGTTAATCTAGAAATT
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATT
* *
60741911 TATTTTAACAGATCAGAGTGGCGCAACGGAAGATTGGTGGGCCCATAACCCACAGGTTCCAAGAT
66 TATTTTAACAGATCAGAGTGGCGCAGCGGAAGCTTGGTGGGCCCATAACCCACAGGTTCCAAGAT
60741976 CGAAACTTGGCTTTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTG
131 CGAAA----GCTTTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTG
60742041 AGTTGGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTA
192 AGTTGGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTA
* *
60742106 ATTTGAAAAAGAAAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTAAGCATCG
257 ATTTAAAAAAGAAAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTAAACATCG
60742171 AGGTTTTAGTG
322 AGGTTTTAGTG
* *
60742182 GATGCATTACAAT-GTGAAATTTATTTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAAAT
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATT
60742246 TATTTTAACAGATCAGAGTGGCGCAGCGGAAGCTTGGTGGGCCCATAACCCACAGGTTCCAAGAT
66 TATTTTAACAGATCAGAGTGGCGCAGCGGAAGCTTGGTGGGCCCATAACCCACAGGTTCCAAGAT
60742311 CGAAA-C-TTG-TAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAGTT
131 CGAAAGCTTTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAGTT
*
60742373 GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAATTTGTGACATATATATTAATATTAATTT
196 GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAATTT
60742438 AAAAAAGAAAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTAAACATCGAGGT
261 AAAAAAGAAAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTAAACATCGAGGT
60742503 TTTAGTG
326 TTTAGTG
*
60742510 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTCAGTCTTGAAATT
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATT
* * *
60742575 TATTTTAACAAATCAGAGTGGTGCAGCGGAAGCGTGGT-GGCCCATAACC
66 TATTTTAACAGATCAGAGTGGCGCAGCGGAAGCTTGGTGGGCCCATAACC
60742624 TTAAATCAGA
Statistics
Matches: 425, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
328 211 0.50
329 86 0.20
330 1 0.00
335 114 0.27
336 13 0.03
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (332 bp):
GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATT
TATTTTAACAGATCAGAGTGGCGCAGCGGAAGCTTGGTGGGCCCATAACCCACAGGTTCCAAGAT
CGAAAGCTTTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTGAGTT
GGCTTGATTTTTTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAATTT
AAAAAAGAAAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTAAACATCGAGGT
TTTAGTG
Found at i:60743129 original size:280 final size:278
Alignment explanation
Indices: 60742624--60743264 Score: 1030
Period size: 280 Copynumber: 2.3 Consensus size: 278
60742614 GCCCATAACC
*
60742624 TTAAATCAGAGTTGATGGATAATTAACTCGTGACATATATATTAATAATAATTTGAAAACGAAAA
1 TTAAATCAGAGTTGATGGATAATTAACTTGTG--ATATATA-T-AT--TAATTTGAAAACGAAAA
60742689 AAAGTTATAGATGCATGACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGT
60 AAAGTTATAGATGCATGACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGT
** * * *
60742754 CTTGGAATTTATTTTAACAGATCAGAGTGGCGCAGCGGAACCTTGGTGGGCCCATAACCCACAGG
125 CTTAAAATTTATTTTAACAAATCAGAGTGGCGCAGCAGAACCGTGGTGGGCCCATAACCCACAGG
* *
60742819 TCCCAAGATCGAAACTTGGCTTTGATAATTTTGAGCAAGTTTTTCTTGATTTTTTAAATTCTTAT
190 TCCCAAGATCGAAACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTAT
60742884 CAAAATGTGGGCTGGCTTGATTTT
255 CAAAATGTGGGCTGGCTTGATTTT
60742908 TTAAATCAGAGTTGATGGATAATTAACTTGTGATATATATATTAATTTGAAAACGAAAAAAAAAG
1 TTAAATCAGAGTTGATGGATAATTAACTTGTGATATATATATTAATTTGAAAACG--AAAAAAAG
* *
60742973 TTATAGATGCATTAGAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTA
64 TTATAGATGCATGACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTA
*
60743038 AAATTTATTTTAACAAATCAGAGTGGCGCAGCAGAAGCGTGGTGGGCCCATAACCCACAGGTCCC
129 AAATTTATTTTAACAAATCAGAGTGGCGCAGCAGAACCGTGGTGGGCCCATAACCCACAGGTCCC
*
60743103 AAGATCGAAACTTGGCTCTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAA
194 AAGATCGAAACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAA
60743168 ATGTGGGCTGGCTTGATTTT
259 ATGTGGGCTGGCTTGATTTT
* *
60743188 CTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAATTTAAAAACGAAAA
1 TTAAATCAGAGTTGATGGATAATTAACTTGTG----ATATA-T-ATATTAATTTGAAAACGAAAA
60743253 AAAGTTATAGAT
60 AAAGTTATAGAT
60743265 CAGTTGGTGA
Statistics
Matches: 335, Mismatches: 14, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
278 13 0.04
280 245 0.73
281 1 0.00
282 7 0.02
284 52 0.16
285 1 0.00
286 16 0.05
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34
Consensus pattern (278 bp):
TTAAATCAGAGTTGATGGATAATTAACTTGTGATATATATATTAATTTGAAAACGAAAAAAAGTT
ATAGATGCATGACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTAAA
ATTTATTTTAACAAATCAGAGTGGCGCAGCAGAACCGTGGTGGGCCCATAACCCACAGGTCCCAA
GATCGAAACTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAAT
GTGGGCTGGCTTGATTTT
Found at i:60743591 original size:335 final size:335
Alignment explanation
Indices: 60742978--60743689 Score: 1158
Period size: 335 Copynumber: 2.1 Consensus size: 335
60742968 AAAAGTTATA
* *
60742978 GATGCATTAGAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGTCTTAAAATT
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGACTTAAAATT
* * *
60743043 TATTTTAACAAATCAGAGTGGCGCAGCAGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAAGAT
66 TATTTTAACAAATCAGAGCGGCGCAGCAAAAGCATGGTGGGCCCATAACCCACAGGTCCCAAGAT
** *
60743108 CGAAACTTGGCTCTGATAATTTTGAGAAATTTTTTCTTGATTTTTTAAATTCTTATCAAAATGTG
131 CGAAACTTGGCTCTGATAATTTTGAGAAAGGTTTTCTTGATTTTTAAAATTCTTATCAAAATGTG
*
60743173 GGCTGGCTTGATTTTCTAAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTA
196 GGCTGGCTTGATTTTCTAAATCAGAGTTGATGGATAAGTAACTTGTGACATATATATTAATATTA
60743238 ATTTAAAAACGAAAAAAAGTTATAGATCAGTTGGTGAGTAAGAAGGGATGGCAAGTAAGCATCGA
261 ATTTAAAAACGAAAAAAAGTTATAGATCAGTTGGTGAGTAAGAAGGGATGGCAAGTAAGCATCGA
*
60743303 GGTTTTAGTG
326 GGTTTTAGGG
*
60743313 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGACTTGAAATT
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGACTTAAAATT
* *
60743378 TATTTTAACAAATCAGAGCGGCGTTA-CAAAAGCATGGTGGGCCCATAA-CCATAGGTCCCAAGA
66 TATTTTAACAAATCAGAGCGGCG-CAGCAAAAGCATGGTGGGCCCATAACCCACAGGTCCCAAGA
* * *
60743441 TTGAAACTTGGCTTTGATAATTTTGAGAAAGGTTTTCTTGATTTTTAAAATTCTTATCCAAATGT
130 TCGAAACTTGGCTCTGATAATTTTGAGAAAGGTTTTCTTGATTTTTAAAATTCTTATCAAAATGT
*
60743506 GGGGCTGGCTTGATTTTTTAAATCAGAGTTGATGGATAAGTAACTTGTGACATATATATTAATAT
195 -GGGCTGGCTTGATTTTCTAAATCAGAGTTGATGGATAAGTAACTTGTGACATATATATTAATAT
* * * * * *
60743571 TAATTTGAAAATGCAAAAAAGTTATAGATCATTTGGTGAGTAAGAAGGGATGGCAGGTGAGCATC
259 TAATTTAAAAACGAAAAAAAGTTATAGATCAGTTGGTGAGTAAGAAGGGATGGCAAGTAAGCATC
60743636 GAGGTTTTAGGG
324 GAGGTTTTAGGG
* * *
60743648 GATGCATTGCAATAGTGAAATTTATGTTGCTAAAAAAAACAC
1 GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACAC
60743690 GCGCCAACGG
Statistics
Matches: 349, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
334 73 0.21
335 275 0.79
336 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (335 bp):
GATGCATTACAATAGTGAAATTTATGTTGTTAAAGAAAACACCTAAATAAGTTAGACTTAAAATT
TATTTTAACAAATCAGAGCGGCGCAGCAAAAGCATGGTGGGCCCATAACCCACAGGTCCCAAGAT
CGAAACTTGGCTCTGATAATTTTGAGAAAGGTTTTCTTGATTTTTAAAATTCTTATCAAAATGTG
GGCTGGCTTGATTTTCTAAATCAGAGTTGATGGATAAGTAACTTGTGACATATATATTAATATTA
ATTTAAAAACGAAAAAAAGTTATAGATCAGTTGGTGAGTAAGAAGGGATGGCAAGTAAGCATCGA
GGTTTTAGGG
Found at i:60744356 original size:10 final size:9
Alignment explanation
Indices: 60744320--60744383 Score: 55
Period size: 9 Copynumber: 7.2 Consensus size: 9
60744310 TTCAAATAAA
60744320 TATTAAAA-
1 TATTAAAAT
60744328 TA-TAAAA-
1 TATTAAAAT
*
60744335 TATAAAAAT
1 TATTAAAAT
60744344 TATTAAGAAT
1 TATTAA-AAT
60744354 TA-TAAGCAAT
1 TATTAA--AAT
*
60744364 TATTAAATT
1 TATTAAAAT
60744373 TATTAAAAT
1 TATTAAAAT
60744382 TA
1 TA
60744384 ACAAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
7 7 0.15
8 6 0.13
9 20 0.43
10 10 0.22
11 3 0.07
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (9 bp):
TATTAAAAT
Found at i:60745064 original size:47 final size:46
Alignment explanation
Indices: 60744984--60745072 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 46
60744974 TTTAATGTTC
* *
60744984 ACGAACATGTTCATTTAACTTAATTGAACATGTTTACGAACATTAG
1 ACGAACATGTTCATTGAACTTAATTGAACATGTTCACGAACATTAG
60745030 ACGAACATGTTCA-TGAACATATAATTGAACATGTTCACGAACA
1 ACGAACATGTTCATTGAAC-T-TAATTGAACATGTTCACGAACA
60745073 ATGTTAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
45 4 0.10
46 14 0.36
47 21 0.54
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (46 bp):
ACGAACATGTTCATTGAACTTAATTGAACATGTTCACGAACATTAG
Found at i:60745262 original size:12 final size:12
Alignment explanation
Indices: 60745245--60745292 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
60745235 TCATTAATAA
60745245 ATAAACGAGCTT
1 ATAAACGAGCTT
**
60745257 ATAAACGAGCCA
1 ATAAACGAGCTT
60745269 ATAAAC-ATGCTT
1 ATAAACGA-GCTT
*
60745281 TTAAACGAGCTT
1 ATAAACGAGCTT
60745293 GTTCGTGAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
11 1 0.03
12 27 0.93
13 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:60745271 original size:24 final size:24
Alignment explanation
Indices: 60745244--60745290 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60745234 GTCATTAATA
60745244 AATAAACGA-GCTTATAAACGAGCC
1 AATAAAC-ATGCTTATAAACGAGCC
*
60745268 AATAAACATGCTTTTAAACGAGC
1 AATAAACATGCTTATAAACGAGC
60745291 TTGTTCGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (24 bp):
AATAAACATGCTTATAAACGAGCC
Found at i:60745361 original size:12 final size:12
Alignment explanation
Indices: 60745344--60745369 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60745334 CAAAACAGGC
60745344 TTTTAGCGGCGT
1 TTTTAGCGGCGT
60745356 TTTTAGCGGCGT
1 TTTTAGCGGCGT
60745368 TT
1 TT
60745370 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:60745403 original size:41 final size:38
Alignment explanation
Indices: 60745358--60745449 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 38
60745348 AGCGGCGTTT
*
60745358 TTAGCGGCGTTTGGACAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGTTT-GA-AAAAAACGCCACTAAAAAT-AAACA
* * *
60745399 TTAGCGGCGCTTTTATAAAAACGCCGCTAAAAATAAACA
1 TTAGCGGCG-TTTGAAAAAAACGCCACTAAAAATAAACA
60745438 TTAGCGGCGTTT
1 TTAGCGGCGTTT
60745450 TTTGAAAAGC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.07
39 13 0.28
40 17 0.37
41 10 0.22
42 3 0.07
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (38 bp):
TTAGCGGCGTTTGAAAAAAACGCCACTAAAAATAAACA
Found at i:60745463 original size:39 final size:40
Alignment explanation
Indices: 60745375--60745469 Score: 124
Period size: 39 Copynumber: 2.4 Consensus size: 40
60745365 CGTTTGGACA
* *
60745375 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTAT
1 AAAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTAT
*
60745415 AAAAACGCCGCTAAAAAT-AAACATTAGCGGCG-TTTTTT
1 AAAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTAT
*
60745453 GAAAAGCGCCGC-AAAAA
1 -AAAAACGCCGCTAAAAA
60745470 GCCTAAGCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.20
39 23 0.46
40 17 0.34
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTAT
Found at i:60745563 original size:41 final size:41
Alignment explanation
Indices: 60745506--60745622 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
60745496 GAGTTTTTGG
* *
60745506 GGCCTTTAACGGCGTTTTTGAAAAAGCGCCGCTAATGCTAC
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTAC
*
60745547 GGCCTTTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATACTAG
1 GGCCTTTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATACTAC
* * *
60745588 GGGCTTTAGCGGCGTTTTTGGAAAAGCGACGCTAA
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
60745623 AAACATTTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 3 0.04
41 63 0.93
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTAC
Found at i:60746062 original size:23 final size:23
Alignment explanation
Indices: 60746030--60746108 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 23
60746020 GGGTTGAGAT
60746030 TTAA-GGTTTAGAGGTTAGAGGG
1 TTAAGGGTTTAGAGGTTAGAGGG
* *
60746052 TTAAGGGTTTAGGGGTTAGA-CG
1 TTAAGGGTTTAGAGGTTAGAGGG
* * *
60746074 TTAAGGGTTAAAAGAGTTAG-GGA
1 TTAAGGGTTTAGAG-GTTAGAGGG
*
60746097 TTTAGGGTTTAG
1 TTAAGGGTTTAG
60746109 GGATTCAAAG
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 16 0.36
23 28 0.64
ACGTcount: A:0.28, C:0.01, G:0.38, T:0.33
Consensus pattern (23 bp):
TTAAGGGTTTAGAGGTTAGAGGG
Found at i:60746076 original size:22 final size:21
Alignment explanation
Indices: 60746013--60746082 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
60746003 TAGGGATTAT
* *
60746013 GGTTTAAGGGTTGAGATTTAA-
1 GGTTTAGGGGTT-AGAGTTAAG
*
60746034 GGTTTAGAGGTTAGAGGGTTAAG
1 GGTTTAGGGGTTAGA--GTTAAG
60746057 GGTTTAGGGGTTAGACGTTAAG
1 GGTTTAGGGGTTAGA-GTTAAG
60746079 GGTT
1 GGTT
60746083 AAAAGAGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.07
21 10 0.24
22 14 0.34
23 14 0.34
ACGTcount: A:0.24, C:0.01, G:0.40, T:0.34
Consensus pattern (21 bp):
GGTTTAGGGGTTAGAGTTAAG
Found at i:60746081 original size:14 final size:14
Alignment explanation
Indices: 60746016--60746083 Score: 50
Period size: 14 Copynumber: 4.7 Consensus size: 14
60746006 GGATTATGGT
*
60746016 TTAAGGGTT-GAGAT
1 TTAAGGGTTAGAG-G
*
60746030 TTAAGGTTTAGAGG
1 TTAAGGGTTAGAGG
60746044 TTAGAGGGTTA-AGGG
1 TTA-AGGGTTAGA-GG
* *
60746059 TTTAGGGGTTAGACG
1 -TTAAGGGTTAGAGG
60746074 TTAAGGGTTA
1 TTAAGGGTTA
60746084 AAAGAGTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
14 21 0.49
15 18 0.42
16 4 0.09
ACGTcount: A:0.26, C:0.01, G:0.38, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGAGG
Found at i:60746320 original size:14 final size:15
Alignment explanation
Indices: 60746294--60746331 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
60746284 GTTTAAAGAG
60746294 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
60746309 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
60746323 TAT-GATTTA
1 TATGGATTTA
60746332 AGGGTTGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 14 0.64
15 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:60746491 original size:298 final size:298
Alignment explanation
Indices: 60745899--60746810 Score: 1075
Period size: 298 Copynumber: 3.0 Consensus size: 298
60745889 TATCACTATA
* * * * *
60745899 GTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAAGATTTAAGGCCAGTTTAGGAG-TTACT
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAAGAGCTCA-T
* * ** ** * * *
60745963 ATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATAGATTAGGGATTATGGTTTAAGGGTT-GA
65 ATGTTAAGGATTAAAGAGTATGAATTTAGGGATTATGGATTAGGGATTATGATTTAAAGGTTGGA
* * *
60746027 GATTTAAGGTTTAGAGGTTAGAGGGTTAAGGGTTTAGGGGTTAGACGTTAAGGGTTAAAAGAGTT
130 -ATTTAAGG--T-----TTAG-CGGTTAAGGGTTTAGGGGTT--A--TTAGGGGTT--AACAGTT
* ** ** * *
60746092 AGGGATTTAGGGTTTAGGGATTCAAAGGTCGAGTTAGGATTTTGGGCATTTAGATTAA-T-TTTT
180 AGGGATTAAAAGTTTAGGGATTCAGGGGTCGGGTTAGGGTTTT-GG--TTTAGATTAATTATTTT
*
60746155 TAAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTT
242 TTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTT
* * * *
60746212 GTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAAGATTTAAGGCCGGTTTAAGAGTTTATA
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAAGAGCTCATA
* * * * *
60746277 TTTTAAGGTTTAAAGAGTATGGATTTAGGGATTATGGATTAGGGATTATGATTTAAGGGTTGGGA
66 TGTTAAGGATTAAAGAGTATGAATTTAGGGATTATGGATTAGGGATTATGATTTAAAGGTTGGAA
* * * *
60746342 TTTAAGGTTTAGGGGTTAGATGG-TTAGGGG-T-TTGGGGGTTAGACACGTTAGGGGTTAAAAG-
131 TTTAAGGTTTAGCGGTTA-AGGGTTTAGGGGTTATTAGGGGTTA-ACA-GTTAGGGATTAAAAGT
60746403 TTAGGGATTCAGGGGTCGGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATTTTA
193 TTAGGGATTCAGGGGTCGGGTTAGGGTTTT-GGTTTAGATTAATTATTTTTTAATTTATATTTTA
*
60746468 AATATGTTCTTATATGATTGTAAAAGAGATAATAATAAATTT
257 AATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTT
*
60746510 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAGGAGCTCATA
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAAGAGCTCATA
** *
60746575 TGTTAAGGATTAGGGAGTATGAATTTAGGGATTATGGATTAGGGATTATGGTTTAAAGGTTGGAA
66 TGTTAAGGATTAAAGAGTATGAATTTAGGGATTATGGATTAGGGATTATGATTTAAAGGTTGGAA
* * *
60746640 TTTAAGGTTTAGCGGTTAAGGGTTTAGGGGTTAGACATTAGGGGTTAATAGTTAGGGATTTAAGG
131 TTTAAGGTTTAGCGGTTAAGGGTTTAGGGGTT----ATTAGGGGTTAACAGTTAGGGATTAAAAG
* *
60746705 TTTAGGGATTCAGGGGCCGGGTTAAGGTTTTGAGTTTAGATTAATTATTTTTTAATTTATATTTT
192 TTTAGGGATTCAGGGGTCGGGTTAGGGTTTTG-GTTTAGATTAATTATTTTTTAATTTATATTTT
*
60746770 AAATATGTTCTTATATAATTGTAAAATAGATAATAATAAAT
256 AAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAAT
60746811 CAAATATATT
Statistics
Matches: 536, Mismatches: 47, Indels: 42
0.86 0.08 0.07
Matches are distributed among these distances:
296 10 0.02
297 5 0.01
298 230 0.43
299 19 0.04
302 13 0.02
303 101 0.19
304 10 0.02
305 13 0.02
306 7 0.01
311 1 0.00
313 123 0.23
314 4 0.01
ACGTcount: A:0.29, C:0.03, G:0.27, T:0.41
Consensus pattern (298 bp):
GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAAGAGCTCATA
TGTTAAGGATTAAAGAGTATGAATTTAGGGATTATGGATTAGGGATTATGATTTAAAGGTTGGAA
TTTAAGGTTTAGCGGTTAAGGGTTTAGGGGTTATTAGGGGTTAACAGTTAGGGATTAAAAGTTTA
GGGATTCAGGGGTCGGGTTAGGGTTTTGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATA
TGTTCTTATATAATTGTAAAAGAGATAATAATAAATTT
Found at i:60746618 original size:14 final size:14
Alignment explanation
Indices: 60746581--60746625 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
60746571 CATATGTTAA
*
60746581 GGATTAGGGAGTAT
1 GGATTAGGGATTAT
*
60746595 GAATTTAGGGATTAT
1 GGA-TTAGGGATTAT
60746610 GGATTAGGGATTAT
1 GGATTAGGGATTAT
60746624 GG
1 GG
60746626 TTTAAAGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.33
Consensus pattern (14 bp):
GGATTAGGGATTAT
Found at i:60747289 original size:152 final size:154
Alignment explanation
Indices: 60747084--60747605 Score: 731
Period size: 156 Copynumber: 3.4 Consensus size: 154
60747074 ATAAAAAACC
* *
60747084 AATTTATAAAAAACAAAATAAAAATTTTTTAGCATAGCAAAACAGCGTCATTTTGTTCAAAATGA
1 AATTTATAAAAAACAAAATAAAAA--TTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAAATGA
* * *
60747149 AATAA-TCTTTTGTGGCGTTTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCG-TTTT
64 AATAATTTTTTTGCGGCG-TTTTTTATGAAAAACGCAGCAATAGATAAGCAATAGTGGCGTTTTT
60747212 TTAAAAAACGCCGCAAAAAAATAAATT
128 TTAAAAAACGCCGCAAAAAAATAAATT
*
60747239 AATTTATATAAAAACAAAA-AAAAA-TTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAA
1 AATTTATA-AAAAACAAAATAAAAATTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAAATGAA
* *
60747302 ATAATTTTTTTGCGGCG-TTTTTATGAAAAATGCTGCAATAGATAAGCAATAGTGGCGTTTTTTT
65 ATAATTTTTTTGCGGCGTTTTTTATGAAAAACGCAGCAATAGATAAGCAATAGTGGCGTTTTTTT
** *
60747366 TTAAAACGCCACAAAAAAATAAATT
130 AAAAAACGCCGCAAAAAAATAAATT
*
60747391 AATTTATAAAAAAACAAAATTAAAAATTTTTAGCATAGTAAAATGGCGTCATTTTGTTCAAAATG
1 AATTTAT-AAAAAACAAAA-TAAAAA-TTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAAATG
* *
60747456 AAATAATTTTTTTGCGGCGTTTTTCAT-AAAAACGCAGTAATAGATAAGCAATAGTGGCGTTTTT
63 AAATAATTTTTTTGCGGCGTTTTTTATGAAAAACGCAGCAATAGATAAGCAATAGTGGCGTTTTT
*
60747520 TTAAAAAAACGCCGC-AAAAAATAAATC
128 TT-AAAAAACGCCGCAAAAAAATAAATT
* * *
60747547 AATTTATAAAAAA-ATAAA-AAAAA-TTTAGCATAGTAAAAAGGCATCATTTTGTTTAAAAT
1 AATTTATAAAAAACA-AAATAAAAATTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAAAT
60747606 AATTTTTAGC
Statistics
Matches: 333, Mismatches: 23, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
151 71 0.21
152 85 0.26
153 16 0.05
154 6 0.02
155 22 0.07
156 118 0.35
157 15 0.05
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (154 bp):
AATTTATAAAAAACAAAATAAAAATTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAAATGAAA
TAATTTTTTTGCGGCGTTTTTTATGAAAAACGCAGCAATAGATAAGCAATAGTGGCGTTTTTTTA
AAAAACGCCGCAAAAAAATAAATT
Found at i:60748849 original size:43 final size:43
Alignment explanation
Indices: 60748786--60749079 Score: 315
Period size: 43 Copynumber: 6.8 Consensus size: 43
60748776 TTTTTACGAG
* * *
60748786 AAGCGTCGCTAAAGGTCTCGAGCTATAGCAGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGGGAA
* *
60748829 AAGCGTCGCTAAAGGCCTCGAGCTATAGCGGCTTTTGTGGGAA
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGGGAA
**
60748872 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAA
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGGGAA
* * * * *
60748915 AAGCGCCGCTAAA-GCTCTTGATCTATAGTGGCGTTTTTGGGAG
1 AAGCGCCGCTAAAGGC-CTCGAGCTATAGCGGCGTTTGTGGGAA
* * * **
60748958 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGCAAA
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGGGAA
* * * *
60749001 AAGCACCGTTAAA-GCTCTTGATCTATAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGC-CTCGAGCTATAGCGGCGTTTGTGGGAA
* * * *
60749044 AGGCACCGCTAAAGGTCAT-GATCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGG-CCTCGAGCTATAGCGGCGTTT
60749080 ATTCCTAAAA
Statistics
Matches: 218, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
42 3 0.01
43 211 0.97
44 3 0.01
45 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGGGAA
Found at i:60748941 original size:86 final size:86
Alignment explanation
Indices: 60748786--60749079 Score: 360
Period size: 86 Copynumber: 3.4 Consensus size: 86
60748776 TTTTTACGAG
* * * ** * *
60748786 AAGCGTCGCTAAAGGTCTCGAGCTATAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGC-CTCGA
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAAAAGCGCCGCTAAA-GCTCTTGA
*
60748850 GCTATAGCGGCTTTTGTGGGAA
65 TCTATAGCGGCTTTTGTGGGAA
60748872 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGCTCTTGAT
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGCTCTTGAT
* *
60748937 CTATAGTGGCGTTTT-TGGGAG
66 CTATAGCGGC-TTTTGTGGGAA
* * * * *
60748958 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGCAAAAAGCACCGTTAAAGCTCTTGAT
1 AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGCTCTTGAT
*
60749023 CTATAGCGGCGTTTGTGGGAA
66 CTATAGCGGCTTTTGTGGGAA
* * * *
60749044 AGGCACCGCTAAAGGTCAT-GATCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGG-CCTCGAGCTATAGCGGCGTTT
60749080 ATTCCTAAAA
Statistics
Matches: 182, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
85 5 0.03
86 172 0.95
87 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (86 bp):
AAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGCTCTTGAT
CTATAGCGGCTTTTGTGGGAA
Found at i:60749027 original size:129 final size:129
Alignment explanation
Indices: 60748786--60749079 Score: 356
Period size: 129 Copynumber: 2.3 Consensus size: 129
60748776 TTTTTACGAG
* * * * *
60748786 AAGCGTCGCTAAAGGTCTCGAGCTATAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCTCGAG
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCTCGAG
* ** *
60748851 CTATAGCGGCTTTTGTGGGAAAAGCGCCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAA
66 CTATAGCGGCGTTTGTGCAAAAAGCACCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAA
* * * * * * *
60748915 AAGCGCCGCTAAAGCTCTTGATCTATAGTGGCGTTTTTGGGAGAAGCGCCGCTAAAGGTCTTGAT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCTCGAG
* * * **
60748980 CTATAGCGGCGTTTGTGCAAAAAGCACCGTTAAA-GCTCTTGATCTATAGCGGCGTTTGTGGGAA
66 CTATAGCGGCGTTTGTGCAAAAAGCACCGCTAAAGGC-CTCGAGCTATAGCGGCGTTTGTGCAAA
* * *
60749044 AGGCACCGCTAAAGGTCATGATCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTT
60749080 ATTCCTAAAA
Statistics
Matches: 138, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
128 2 0.01
129 136 0.99
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (129 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCTCGAG
CTATAGCGGCGTTTGTGCAAAAAGCACCGCTAAAGGCCTCGAGCTATAGCGGCGTTTGTGCAAA
Found at i:60749469 original size:20 final size:19
Alignment explanation
Indices: 60749444--60749497 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
60749434 TTAAATCAAG
*
60749444 ATTAATTGTTAAATATTTTT
1 ATTAATT-TTAAATATTTTA
60749464 ATTAATTTTTAACA-ATTTTA
1 ATTAA-TTTTAA-ATATTTTA
*
60749484 ATAAATTTTAAATA
1 ATTAATTTTAAATA
60749498 AATTTATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
18 1 0.03
19 7 0.24
20 18 0.62
21 3 0.10
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
ATTAATTTTAAATATTTTA
Found at i:60755043 original size:15 final size:15
Alignment explanation
Indices: 60755023--60755054 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
60755013 CCCAACTCCG
60755023 CAAAGAGAATGGCAA
1 CAAAGAGAATGGCAA
60755038 CAAAGAGAATGGCAA
1 CAAAGAGAATGGCAA
60755053 CA
1 CA
60755055 CGAATATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.16, G:0.25, T:0.06
Consensus pattern (15 bp):
CAAAGAGAATGGCAA
Found at i:60756406 original size:194 final size:194
Alignment explanation
Indices: 60756180--60756575 Score: 792
Period size: 194 Copynumber: 2.0 Consensus size: 194
60756170 TTTTAAAGAA
60756180 TTAAATTAAAATCTTATTATTTTTAGAGGTTAAAGTATAATTTTATCATTACTAATTTATAACTT
1 TTAAATTAAAATCTTATTATTTTTAGAGGTTAAAGTATAATTTTATCATTACTAATTTATAACTT
60756245 TACACATTTTAAAGAGTAAAAATATAACTTTCTAAAAAAATTGGAGCACATGATTCAAAAGTTAA
66 TACACATTTTAAAGAGTAAAAATATAACTTTCTAAAAAAATTGGAGCACATGATTCAAAAGTTAA
60756310 ACTTGATAATGTTGATTCTGATTGTAATTACACTCGTATCTTAATAAAAAAACATTCATTAAAG
131 ACTTGATAATGTTGATTCTGATTGTAATTACACTCGTATCTTAATAAAAAAACATTCATTAAAG
60756374 TTAAATTAAAATCTTATTATTTTTAGAGGTTAAAGTATAATTTTATCATTACTAATTTATAACTT
1 TTAAATTAAAATCTTATTATTTTTAGAGGTTAAAGTATAATTTTATCATTACTAATTTATAACTT
60756439 TACACATTTTAAAGAGTAAAAATATAACTTTCTAAAAAAATTGGAGCACATGATTCAAAAGTTAA
66 TACACATTTTAAAGAGTAAAAATATAACTTTCTAAAAAAATTGGAGCACATGATTCAAAAGTTAA
60756504 ACTTGATAATGTTGATTCTGATTGTAATTACACTCGTATCTTAATAAAAAAACATTCATTAAAG
131 ACTTGATAATGTTGATTCTGATTGTAATTACACTCGTATCTTAATAAAAAAACATTCATTAAAG
60756568 TTAAATTA
1 TTAAATTA
60756576 GATTTGACAT
Statistics
Matches: 202, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
194 202 1.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (194 bp):
TTAAATTAAAATCTTATTATTTTTAGAGGTTAAAGTATAATTTTATCATTACTAATTTATAACTT
TACACATTTTAAAGAGTAAAAATATAACTTTCTAAAAAAATTGGAGCACATGATTCAAAAGTTAA
ACTTGATAATGTTGATTCTGATTGTAATTACACTCGTATCTTAATAAAAAAACATTCATTAAAG
Found at i:60758457 original size:17 final size:18
Alignment explanation
Indices: 60758425--60758467 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
60758415 TTTCACAGAT
*
60758425 TTAATAGTTTATATTA-AA
1 TTAATA-TTTACATTATAA
*
60758443 TTTATATTTACATTATAA
1 TTAATATTTACATTATAA
60758461 TTAATAT
1 TTAATAT
60758468 AAAAGCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTAATATTTACATTATAA
Found at i:60764463 original size:8 final size:7
Alignment explanation
Indices: 60764450--60764527 Score: 62
Period size: 6 Copynumber: 11.4 Consensus size: 7
60764440 ACTAGATGGT
60764450 ATAAATGA
1 ATAAAT-A
60764458 ATAAATA
1 ATAAATA
60764465 AT-AATA
1 ATAAATA
60764471 AT-AATA
1 ATAAATA
60764477 AT-AATA
1 ATAAATA
60764483 AT-AATA
1 ATAAATA
60764489 AT-AATA
1 ATAAATA
60764495 AT-AATA
1 ATAAATA
60764501 CA-AAACTA
1 -ATAAA-TA
60764509 ATAATATA
1 ATAA-ATA
60764517 ATATAATA
1 ATA-AATA
60764525 ATA
1 ATA
60764528 TTACAATGAA
Statistics
Matches: 64, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
6 34 0.53
7 7 0.11
8 21 0.33
9 2 0.03
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (7 bp):
ATAAATA
Found at i:60764469 original size:3 final size:3
Alignment explanation
Indices: 60764461--60764527 Score: 93
Period size: 3 Copynumber: 22.3 Consensus size: 3
60764451 TAAATGAATA
*
60764461 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACAA AACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T
60764508 AAT AAT -AT AAT -AT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
60764528 TTACAATGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 4 0.07
3 50 0.86
4 4 0.07
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:60773019 original size:34 final size:33
Alignment explanation
Indices: 60772971--60773067 Score: 95
Period size: 35 Copynumber: 2.8 Consensus size: 33
60772961 TTAAAATGGT
*
60772971 CAACATTTATACATGCAAAGCAACCACATTTGGA
1 CAACATTTA-ACATGAAAAGCAACCACATTTGGA
*
60773005 CAACATTATAACATGTAAAAACAACCACATTTGGA
1 CAACATT-TAACATG-AAAAGCAACCACATTTGGA
* * * **
60773040 TATCATTGTAATATGTGAAGCAACCACA
1 CAACATT-TAACATGAAAAGCAACCACA
60773068 CTTTAATACC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 22 0.42
35 30 0.58
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (33 bp):
CAACATTTAACATGAAAAGCAACCACATTTGGA
Found at i:60782476 original size:25 final size:24
Alignment explanation
Indices: 60782444--60782491 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
60782434 TTAGTTTTCA
*
60782444 TGAGCTTCCCGTTAAATGGCTCTTG
1 TGAGCTTCCCGTT-AATAGCTCTTG
60782469 TGAGCTTCCCGTTAATAGCTCTT
1 TGAGCTTCCCGTTAATAGCTCTT
60782492 CAGAGCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (24 bp):
TGAGCTTCCCGTTAATAGCTCTTG
Found at i:60782497 original size:24 final size:24
Alignment explanation
Indices: 60782420--60782497 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
60782410 ATGGCTCGAA
* * *
60782420 AGAGCGTCCCGTTATTAG-TTTTC
1 AGAGCTTCCCGTTAATAGCTCTTC
* *
60782443 ATGAGCTTCCCGTTAAATGGCTCTTG
1 A-GAGCTTCCCGTT-AATAGCTCTTC
*
60782469 TGAGCTTCCCGTTAATAGCTCTTC
1 AGAGCTTCCCGTTAATAGCTCTTC
60782493 AGAGC
1 AGAGC
60782498 ATTTCAATTT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
23 1 0.02
24 24 0.56
25 15 0.35
26 3 0.07
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (24 bp):
AGAGCTTCCCGTTAATAGCTCTTC
Found at i:60783512 original size:10 final size:10
Alignment explanation
Indices: 60783493--60783532 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
60783483 TTGTACCTTG
60783493 GAAAATTTTT
1 GAAAATTTTT
*
60783503 GAAAAGTTTT
1 GAAAATTTTT
*
60783513 GAAATTTTTT
1 GAAAATTTTT
60783523 GAAAAATTTT
1 G-AAAATTTT
60783533 CTGAGTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (10 bp):
GAAAATTTTT
Found at i:60783521 original size:20 final size:20
Alignment explanation
Indices: 60783493--60783532 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60783483 TTGTACCTTG
*
60783493 GAAAATTTTTGAAAAGTTTT
1 GAAAATTTTTGAAAAATTTT
*
60783513 GAAATTTTTTGAAAAATTTT
1 GAAAATTTTTGAAAAATTTT
60783533 CTGAGTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (20 bp):
GAAAATTTTTGAAAAATTTT
Found at i:60788023 original size:23 final size:23
Alignment explanation
Indices: 60787979--60788023 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
60787969 TCTTATTTTG
* *
60787979 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
60788002 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
60788024 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:60788153 original size:20 final size:20
Alignment explanation
Indices: 60788107--60788155 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
60788097 ACATGTGTAC
60788107 ATATATA-TTTATAATTTTA
1 ATATATATTTTATAATTTTA
* *
60788126 ATACATATTTTGTAA-TTTA
1 ATATATATTTTATAATTTTA
60788145 TATATATATTT
1 -ATATATATTT
60788156 ATATTTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATATATATTTTATAATTTTA
Found at i:60789317 original size:15 final size:16
Alignment explanation
Indices: 60789289--60789318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60789279 AATTAAATAC
60789289 AACAACATTTATTAAT
1 AACAACATTTATTAAT
60789305 AACAACA-TTATTAA
1 AACAACATTTATTAA
60789319 GTTGAAACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (16 bp):
AACAACATTTATTAAT
Found at i:60789832 original size:21 final size:20
Alignment explanation
Indices: 60789808--60789861 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
60789798 AATAAAAAGG
60789808 ATAAATTTTAAAACAATGTTA
1 ATAAATTTTAAAAC-ATGTTA
* *
60789829 ATAAACTCT-AAACATGTTA
1 ATAAATTTTAAAACATGTTA
60789848 ATAATAATTTTAAA
1 AT-A-AATTTTAAA
60789862 TAATGATGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 8 0.31
20 5 0.19
21 11 0.42
22 2 0.08
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (20 bp):
ATAAATTTTAAAACATGTTA
Found at i:60790711 original size:23 final size:24
Alignment explanation
Indices: 60790684--60790729 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
60790674 TTGTATAGCA
60790684 AATAGA-AAGAAGCA-AAGAAAAAT
1 AATAGAGAA-AAGCAGAAGAAAAAT
*
60790707 AATAGAGAAACGCAGAAGAAAAA
1 AATAGAGAAAAGCAGAAGAAAAA
60790730 AAAAACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.67, C:0.07, G:0.20, T:0.07
Consensus pattern (24 bp):
AATAGAGAAAAGCAGAAGAAAAAT
Found at i:60794794 original size:3 final size:3
Alignment explanation
Indices: 60794786--60794827 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
60794776 AATATTAAAG
* * *
60794786 AAT AAT AAT AAT GAC AAT AAC AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
60794828 CGATTGAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:60799084 original size:60 final size:59
Alignment explanation
Indices: 60799015--60799149 Score: 171
Period size: 59 Copynumber: 2.3 Consensus size: 59
60799005 GACAAAATTG
**
60799015 AATAATTGAGTGACTATTTTATAACTTTTCATAGTTGGATGACCAAAAAAGAAATTTACT
1 AATAATTGAGTGACTATTTTATAA-TTTTCATAAATGGATGACCAAAAAAGAAATTTACT
* * * * * * *
60799075 AGTAGTTGAGTGGCCATTTTGTAATTTTCATAAATGGGTGACCGAAAAAGAAATTTACT
1 AATAATTGAGTGACTATTTTATAATTTTCATAAATGGATGACCAAAAAAGAAATTTACT
*
60799134 AATAATTGATTGACTA
1 AATAATTGAGTGACTA
60799150 CTAATGTAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
59 42 0.69
60 19 0.31
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (59 bp):
AATAATTGAGTGACTATTTTATAATTTTCATAAATGGATGACCAAAAAAGAAATTTACT
Found at i:60804555 original size:16 final size:17
Alignment explanation
Indices: 60804515--60804558 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
60804505 TTCTCGACAT
* *
60804515 AGTTGTTCTCAATTTAG
1 AGTTGTTCTGAATTAAG
60804532 AGGTTGTTCTGAA-TAAG
1 A-GTTGTTCTGAATTAAG
60804549 AGTTGTTCTG
1 AGTTGTTCTG
60804559 CGGTAATGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.38
17 5 0.21
18 10 0.42
ACGTcount: A:0.23, C:0.09, G:0.25, T:0.43
Consensus pattern (17 bp):
AGTTGTTCTGAATTAAG
Found at i:60804640 original size:16 final size:15
Alignment explanation
Indices: 60804615--60804644 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
60804605 CGGAAAAAAC
60804615 ACAATTGTTCTAAAT
1 ACAATTGTTCTAAAT
60804630 ACAAGTTGTTCTAAA
1 ACAA-TTGTTCTAAA
60804645 CAATGGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (15 bp):
ACAATTGTTCTAAAT
Found at i:60809464 original size:12 final size:12
Alignment explanation
Indices: 60809447--60809477 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60809437 GAAATGGAGA
60809447 ATCATCATCACC
1 ATCATCATCACC
*
60809459 ATCATCATCAGC
1 ATCATCATCACC
60809471 ATCATCA
1 ATCATCA
60809478 ATATGGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (12 bp):
ATCATCATCACC
Found at i:60813538 original size:26 final size:26
Alignment explanation
Indices: 60813508--60813560 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
60813498 TACTGGCCAT
60813508 TGAGTTTTATTTTGGTATATAATTAA
1 TGAGTTTTATTTTGGTATATAATTAA
60813534 TGAGTTTTATTTTGGTATATAATTAA
1 TGAGTTTTATTTTGGTATATAATTAA
60813560 T
1 T
60813561 ACTATAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (26 bp):
TGAGTTTTATTTTGGTATATAATTAA
Found at i:60813734 original size:6 final size:6
Alignment explanation
Indices: 60813723--60813749 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
60813713 ATTCAGTATA
60813723 TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TAT
60813750 CTATATGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:60817257 original size:26 final size:26
Alignment explanation
Indices: 60817194--60817258 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 26
60817184 AACACTATCA
*
60817194 TAAATAAAATAAATATTTTATTATAT
1 TAAATATAATAAATATTTTATTATAT
* *
60817220 TAAAAAACATAATAAATATTTTATTGTAT
1 T---AAATATAATAAATATTTTATTATAT
60817249 TAAATATAAT
1 TAAATATAAT
60817259 TTTTAAAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
26 9 0.28
29 23 0.72
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
TAAATATAATAAATATTTTATTATAT
Found at i:60820866 original size:171 final size:171
Alignment explanation
Indices: 60820574--60820962 Score: 552
Period size: 171 Copynumber: 2.3 Consensus size: 171
60820564 TCAATTGATT
* * * * * *
60820574 TAAATTCTAAATTCTTTCCTAAATTAAGT-TAATTAAATAGTAATTAAAGAAGTTTTCTCGTTAG
1 TAAATTATAAATTCATTACTAAATTAA-TCTAATTAAACAGTAATTAAAGAAGGTTTCCCGTTAG
* * *
60820638 TAAAAACCTTCAACTCAGATTGATCTAGTTTCAGTGATGTGATCATTGCATAGATTAATGAAACT
65 TAAAAACCTCCAACTCAGATTGATCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACT
* *
60820703 AAATCAGATCTAAAAATCAGTGATGTGAATAG-GCCATGAAGC
130 AAATCAAATCTAAAAATCAGTGATGTGAATAGTG-CATAAAGC
60820745 TAAATTATAAATTCATTACTAAATTAATCTAATTAAACAGTAATTAAAGAAGGTTTCCCGTCT-G
1 TAAATTATAAATTCATTACTAAATTAATCTAATTAAACAGTAATTAAAGAAGGTTTCCCGT-TAG
* *
60820809 TAAAAACCTCCAACTCAGATTGATCTAGTTTCAATGATGTGATTATTTCATAGATTAACGAAACT
65 TAAAAACCTCCAACTCAGATTGATCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACT
*
60820874 AAATCAAATCTAAAAATCAGTGATGTGATTAGTGCATAAAGC
130 AAATCAAATCTAAAAATCAGTGATGTGAATAGTGCATAAAGC
* * * *
60820916 TAAATTATAAATTCATTGCTCAATTAA-CTTAATCAAACAGTTATTAA
1 TAAATTATAAATTCATTACTAAATTAATC-TAATTAAACAGTAATTAA
60820963 CAAGCTTTGT
Statistics
Matches: 196, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
170 2 0.01
171 192 0.98
172 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (171 bp):
TAAATTATAAATTCATTACTAAATTAATCTAATTAAACAGTAATTAAAGAAGGTTTCCCGTTAGT
AAAAACCTCCAACTCAGATTGATCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTA
AATCAAATCTAAAAATCAGTGATGTGAATAGTGCATAAAGC
Found at i:60822751 original size:21 final size:22
Alignment explanation
Indices: 60822726--60822768 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
60822716 ATTTAATTAT
60822726 AATTATAAAAAAT-ATTT-TTAA
1 AATTA-AAAAAATAATTTCTTAA
60822747 AATTAAAAAAATAATTTCTTAA
1 AATTAAAAAAATAATTTCTTAA
60822769 TCTATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTAAAAAAATAATTTCTTAA
Found at i:60823153 original size:15 final size:14
Alignment explanation
Indices: 60823128--60823158 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
60823118 GAAATAATTT
60823128 ATTTTAAAAATAAA
1 ATTTTAAAAATAAA
60823142 ATTTTGAAAAATAAA
1 ATTTT-AAAAATAAA
60823157 AT
1 AT
60823159 CAATTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
ATTTTAAAAATAAA
Found at i:60825011 original size:22 final size:22
Alignment explanation
Indices: 60824983--60825026 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
60824973 GCTTTGGAAA
60824983 TAATGCCCATACCAATCAACCT
1 TAATGCCCATACCAATCAACCT
60825005 TAATGCCCATACCAATCAACCT
1 TAATGCCCATACCAATCAACCT
60825027 GAGACTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.36, G:0.05, T:0.23
Consensus pattern (22 bp):
TAATGCCCATACCAATCAACCT
Found at i:60827094 original size:87 final size:87
Alignment explanation
Indices: 60826948--60827115 Score: 291
Period size: 87 Copynumber: 1.9 Consensus size: 87
60826938 AGCTAAAATC
* *
60826948 GTACCGGAATCCTTGACTAAAAAGGGAAAAGATAAAGTCGACGTCGAATAGCTTGGAATTCCTGG
1 GTACCGAAATCCTCGACTAAAAAGGGAAAAGATAAAGTCGACGTCGAATAGCTTGGAATTCCTGG
60827013 TTTGTATTTCTATAATAACGTT
66 TTTGTATTTCTATAATAACGTT
* * *
60827035 GTACCGAAATCCTCGACTAAAAGGGGAAAAGATAAAGTCGACTTCGAATAGCTTGGAATTTCTGG
1 GTACCGAAATCCTCGACTAAAAAGGGAAAAGATAAAGTCGACGTCGAATAGCTTGGAATTCCTGG
60827100 TTTGTATTTCTATAAT
66 TTTGTATTTCTATAAT
60827116 CTGAACCTAG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30
Consensus pattern (87 bp):
GTACCGAAATCCTCGACTAAAAAGGGAAAAGATAAAGTCGACGTCGAATAGCTTGGAATTCCTGG
TTTGTATTTCTATAATAACGTT
Found at i:60827336 original size:16 final size:16
Alignment explanation
Indices: 60827311--60827344 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60827301 ATGAATATAT
* *
60827311 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
60827327 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
60827343 AT
1 AT
60827345 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:60829944 original size:18 final size:17
Alignment explanation
Indices: 60829918--60829961 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
60829908 TTCCTCTTCA
*
60829918 TTTTCTCTTA-TTTATT
1 TTTTTTCTTATTTTATT
60829934 TGTTTTATCTTATTTTATT
1 T-TTTT-TCTTATTTTATT
60829953 TTTTTTCTT
1 TTTTTTCTT
60829962 TTGCACATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 1 0.04
17 7 0.29
18 9 0.38
19 7 0.29
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTTCTTATTTTATT
Found at i:60830762 original size:7 final size:7
Alignment explanation
Indices: 60830750--60830806 Score: 51
Period size: 7 Copynumber: 7.4 Consensus size: 7
60830740 TTTAACCGAA
60830750 TTTTTAT
1 TTTTTAT
60830757 TTTTTATTT
1 TTTTTA--T
60830766 TTATTTAT
1 TT-TTTAT
*
60830774 TGTTTAT
1 TTTTTAT
60830781 TTTTGTAT
1 TTTT-TAT
60830789 TTTTGTAT
1 TTTT-TAT
*
60830797 TTTATAT
1 TTTTTAT
60830804 TTT
1 TTT
60830807 GTGTCCTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
7 20 0.47
8 16 0.37
9 3 0.07
10 4 0.09
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (7 bp):
TTTTTAT
Found at i:60830767 original size:13 final size:13
Alignment explanation
Indices: 60830749--60830806 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 13
60830739 ATTTAACCGA
60830749 ATTTTTATTTTTT
1 ATTTTTATTTTTT
60830762 ATTTTTA---TTT
1 ATTTTTATTTTTT
60830772 ATTGTTTATTTTTGT
1 ATT-TTTATTTTT-T
*
60830787 ATTTTTGTATTTTAT
1 A-TTTT-TATTTTTT
60830802 ATTTT
1 ATTTT
60830807 GTGTCCTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
10 6 0.16
11 4 0.11
13 7 0.19
14 6 0.16
15 6 0.16
16 8 0.22
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:60834904 original size:18 final size:18
Alignment explanation
Indices: 60834883--60834932 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
60834873 AATTCACTTG
60834883 AGAAAAAA-ATAAACAAAA
1 AGAAAAAAGA-AAACAAAA
*
60834901 AGAAAAAAGAAAAGAAAA
1 AGAAAAAAGAAAACAAAA
60834919 ACGAAAAAAGAAAA
1 A-GAAAAAAGAAAA
60834933 GAGAAAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 16 0.55
19 13 0.45
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (18 bp):
AGAAAAAAGAAAACAAAA
Found at i:60834919 original size:19 final size:20
Alignment explanation
Indices: 60834897--60834940 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
60834887 AAAAATAAAC
60834897 AAAAAGAAAAAAGAAAAGA-
1 AAAAAGAAAAAAGAAAAGAG
*
60834916 AAAACGAAAAAAGAAAAGAG
1 AAAAAGAAAAAAGAAAAGAG
60834936 AAAAA
1 AAAAA
60834941 TGAGAGGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAGAAAAGAG
Found at i:60834926 original size:8 final size:7
Alignment explanation
Indices: 60834897--60834940 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
60834887 AAAAATAAAC
60834897 AAAAAGA
1 AAAAAGA
60834904 AAAAAG-
1 AAAAAGA
60834910 -AAAAGA
1 AAAAAGA
*
60834916 AAAACGA
1 AAAAAGA
60834923 AAAAAGA
1 AAAAAGA
*
60834930 AAAGAGA
1 AAAAAGA
60834937 AAAA
1 AAAA
60834941 TGAGAGGCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 5 0.16
7 26 0.84
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:60836134 original size:44 final size:42
Alignment explanation
Indices: 60836086--60836317 Score: 101
Period size: 44 Copynumber: 5.3 Consensus size: 42
60836076 GAAAACAAAC
*
60836086 CTTGCCTCTCTTGGGTGTAACAGAGCTGGTTGAAGACAGCAGAT
1 CTTGCCT-TCTTGGATGTAACAGAGCTGGTTGAAGACA-CAGAT
* * * * * * *
60836130 CTTGCCTTCCTGTAT-TAACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCTTGGATGTAACA--G-AGCTGGTTGAAGACACAGAT
* * ****
60836174 CTTGCCTCTCTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCTTGGATGTAACAGAGCTGGTTGAAGAC-ACAGAT
* * ** * * * * *
60836218 TTTGCCTTCCTACAT-TGACAGTGAAGCAGGTCGAAGACACAAAC
1 CTTGCCTTCTTGGATGTAACA--G-AGCTGGTTGAAGACACAGAT
* *
60836262 CTTGCCTCTCTCAGG-TGTAGCAGAGCTGGTTGAAGACAGCAGAT
1 CTTGCCT-TCT-TGGATGTAACAGAGCTGGTTGAAGACA-CAGAT
60836306 CTTGCCTTCTTG
1 CTTGCCTTCTTG
60836318 CATTGACAGC
Statistics
Matches: 129, Mismatches: 46, Indels: 28
0.64 0.23 0.14
Matches are distributed among these distances:
42 8 0.06
43 35 0.27
44 51 0.40
45 31 0.24
46 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (42 bp):
CTTGCCTTCTTGGATGTAACAGAGCTGGTTGAAGACACAGAT
Found at i:60836223 original size:88 final size:88
Alignment explanation
Indices: 60835894--60836603 Score: 749
Period size: 88 Copynumber: 8.1 Consensus size: 88
60835884 CCCTAGAGAA
* * * * *
60835894 CAGATCAAAGAAACAGATCCTTGCCTC-CATCAGTTGCAGTGGAGCTGGTTAAAGACAGCAGATC
1 CAGATCGAAGACACA-AACCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATC
60835958 TTGCCTTCCTGCATTAACAGCGAAG
64 TTGCCTTCCTGCATTAACAGCGAAG
* * * * * *
60835983 CAGATCGAAAACA-AAACCTTGCCTCTATCAGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTT
*
60836047 GCCTTCCTGCATTAACAGAGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * *** *
60836070 CAAATCGAA-A-ACAAACCTTGCCTCTCTTGGGTGTAACAGAGCTGGTTGAAGACAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTT
*
60836133 GCCTTCCTGTATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * *
60836156 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGATTTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTT
* * *
60836221 GCCTTCCTACATTGACAGTGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* ** *
60836244 CAGGTCGAAGACACAAACCTTGCCTCTCTCAGG-TGTAGCAGAGCTGGTTGAAGACAGCAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTCTC-GGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCT
* *
60836308 TGCCTTCTTGCATTGACAGCGAAG
65 TGCCTTCCTGCATTAACAGCGAAG
* * * *
60836332 TAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTT
* *
60836397 GCCTTCTTGTATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * * *
60836420 CAGATCGAAAACA-AAACCTTACCTC-CATCAGTTGCAGTGGAGCTGGTTAAAAATAGCAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCT
* * *
60836483 TGCATTCCTGCGTTAACAGTGAAG
65 TGCCTTCCTGCATTAACAGCGAAG
* * * * * * *
60836507 TAGATC-AA-AAACAAACCTTGCCTC-CATCAGTTGTAGTGAAGCTGGCTGAAGATAGCAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCT
** * * *
60836569 TGTATTCCTGTACTGAC-GACGAAG
65 TGCCTTCCTGCATTAACAG-CGAAG
60836593 CAGATCGAAGA
1 CAGATCGAAGA
60836604 AGCCAGTCTT
Statistics
Matches: 530, Mismatches: 80, Indels: 23
0.84 0.13 0.04
Matches are distributed among these distances:
85 4 0.01
86 138 0.26
87 147 0.28
88 229 0.43
89 12 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (88 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTT
GCCTTCCTGCATTAACAGCGAAG
Found at i:60836354 original size:44 final size:43
Alignment explanation
Indices: 60836219--60836356 Score: 113
Period size: 44 Copynumber: 3.1 Consensus size: 43
60836209 ACAACAGATT
* * *
60836219 TTGCCTTCCTACATTGACAGTGAAGCAGGTCGAAGACACAAACC
1 TTGCCTT-CTTCATTGACAGCGAAGTAGGTCGAAGACACAAACC
* * * * *
60836263 TTGCC-TCTCTCAGGTG-TAGC-AGAGCT-GGTTGAAGACAGCAGATC
1 TTGCCTTCT-TCA-TTGACAGCGA-AG-TAGGTCGAAGACA-CAAACC
60836307 TTGCCTTCTTGCATTGACAGCGAAGTAGGTCGAAGACACAAACC
1 TTGCCTTCTT-CATTGACAGCGAAGTAGGTCGAAGACACAAACC
60836351 TTGCCT
1 TTGCCT
60836357 CTCTCGGTTG
Statistics
Matches: 71, Mismatches: 13, Indels: 20
0.68 0.12 0.19
Matches are distributed among these distances:
42 3 0.04
43 17 0.24
44 30 0.42
45 20 0.28
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (43 bp):
TTGCCTTCTTCATTGACAGCGAAGTAGGTCGAAGACACAAACC
Found at i:60836861 original size:95 final size:95
Alignment explanation
Indices: 60836681--60836876 Score: 259
Period size: 95 Copynumber: 2.1 Consensus size: 95
60836671 CGACAGCGGG
* * *
60836681 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTATAGTGGAGTACGGTGAAGCCGATAATT
1 GCAGATCAAATATGGCAAATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGATAATT
*****
60836746 CTATCTCCCTGGTTGGCAGTGGAAAAGATT
66 CTATCTCCCTGAAAAACAGTGGAAAAGATT
* * *
60836776 GCAGATCAAATATGGCAAATTTTACCTCCTTGTGACTACAGTGGAGTACATTGAAGCC-AGTAGT
1 GCAGATCAAATATGGCAAATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGA-TAAT
*
60836840 TCTATCTCCCTGAAAAACAGTGGAATAGATT
65 TCTATCTCCCTGAAAAACAGTGGAAAAGATT
*
60836871 GAAGAT
1 GCAGAT
60836877 TACAGATCTT
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 1 0.01
95 86 0.99
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (95 bp):
GCAGATCAAATATGGCAAATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGATAATT
CTATCTCCCTGAAAAACAGTGGAAAAGATT
Found at i:60836906 original size:44 final size:43
Alignment explanation
Indices: 60836858--60838274 Score: 601
Period size: 40 Copynumber: 33.4 Consensus size: 43
60836848 CCTGAAAAAC
* * *
60836858 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCTTAAGCAGT
1 AGTGGAGTAGA-TGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * *
60836902 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* *
60836942 AGTGGAGTAGACGAAAGA-AACCAGATCTTATCTCCCTAAACAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * *
60836986 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* *
60837026 AGTGGAGTAGAAGAAAGA-AACCAGATCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * * * ** *
60837070 AGTTGAGCAGATCAA-ATATGGCAGATTTTACCTCCCTGTGACTA-C
1 AGTGGAGTAGATGAAGATA--ACAGATCTTATCTCCCTAAG-C-AGT
* * * ** *
60837115 AGTGGAGTACGGTGAAACCGAT-A-A-TTC-TATCTCCCT-GGTTGGC
1 AGTGGAGTA-GATG-AA--GATAACAGATCTTATCTCCCTAAG-CAGT
** * * * * ** *
60837158 AGTGGAAAAGATTGCAGATCAAATATGGCAGATTTTACCTCCTTGTGACTA-C
1 AGTGGAGTAGA-TGAAGAT---A-A---CAGATCTTATCTCCCTAAG-C-AGT
* ** ** * * **
60837210 AGTGGAGTACATTGAAGCCAGTAGTTC-TATCTCCCTGAGCAAC
1 AGTGGAGTAGA-TGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837253 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCTTAAGCAGT
1 AGTGGAGTAGA-TGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * * *
60837297 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837337 AGTGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGCAAT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * *
60837381 AGTGGA-TCAGAT-CACATTA-AG-TCTTATCTCCCTAAGTAGT
1 AGTGGAGT-AGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837421 AGTGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60837465 GGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837505 AGTGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGAAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60837549 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837589 AGTGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGCAAT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * *
60837633 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * *
60837673 AGTAGAGTAGACGAAAGA-AACCAG-TCTTATCTCCCTAGGCAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60837716 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCTTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * * * *
60837756 AGTGGAGCATAT-CACATCA-AG-TCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * *
60837796 AGTGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGAAAT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60837840 AGTGGAGCAGAT-CACATTA-AG-TCTTATCTCCCTAAGCAAT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * *
60837880 AGTGGAGCAGACGAAAGA-AACCAAATCTTATCTCTCTAAGCAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60837924 AGTCGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* *
60837964 AGTGGAGCAGACGAAAGA-AACCAG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60838007 AGTGGAGCAGACGAAAAAAACCATATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * * *
60838051 AGTGGAGCAGAT-CACA-ACCAGATATTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* * * *
60838092 AGTGGAGCAGAT-CACATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
* ** *
60838132 AGTGGAGCAGACAAAAGA-AACCAG-TCTTATCTCCATAAGCAGT
1 AGTGGAGTAGA-TGAAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * *
60838175 AATGGAGCAGACGAAAGA-AACCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATG-AAGATAA-CAGATCTTATCTCCCTAAGCAGT
* * * *
60838219 AGTGAAGCAGATCG--CATCA-AG-TCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGAT-GAAGATAACAGATCTTATCTCCCTAAGCAGT
* *
60838259 AGTGGAGCAGACGAAG
1 AGTGGAGTAGATGAAG
60838275 GAAACCAATC
Statistics
Matches: 1061, Mismatches: 214, Indels: 199
0.72 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 378 0.36
41 71 0.07
42 54 0.05
43 170 0.16
44 341 0.32
45 13 0.01
46 4 0.00
47 2 0.00
49 2 0.00
50 3 0.00
51 7 0.01
52 15 0.01
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (43 bp):
AGTGGAGTAGATGAAGATAACAGATCTTATCTCCCTAAGCAGT
Found at i:60836967 original size:84 final size:84
Alignment explanation
Indices: 60836879--60838269 Score: 568
Period size: 84 Copynumber: 16.4 Consensus size: 84
60836869 TTGAAGATTA
*
60836879 CAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
60836944 TGGAGTAGACGAAAGAAAC
66 TGGAGTAGAAGAAAGAAAC
*
60836963 CAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
60837028 TGGAGTAGAAGAAAGAAAC
66 TGGAGTAGAAGAAAGAAAC
* * * * * **
60837047 CAGATCTTATCTCCCTAAGTAGTAGTTGAGCAGATCAAAT-ATGGCAGATTTTACCTCCCTGTGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCA----AG-TCTTATCTCCCTAAG-
* *
60837111 CTA-CAGTGGAGTACG--G--TGAAAC
60 C-AGTAGTGGAGTA-GAAGAAAGAAAC
* ** *** * * *
60837133 C-GATAATTCTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAAT-ATGGCAGATTTTAC
1 CAGAT--CT-TATCTCCC---TAAGCAGT--AGTGGA--GCAGATCACATCA----AG-TCTTAT
* ** * * * ** *
60837196 CTCCTTGTGACTA-CAGTGGAGTACATTG-AAGCCAG
51 CTCCCTAAG-C-AGTAGTGGAGTAGA-AGAAAGAAAC
* * * ** ** * * * *
60837231 TAGTTC-TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCTTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-T-CACATCA-AG-TCTTATCTCCCTAAGCA
* ** * *
60837295 GTAGTGGAGCAG-A-TCA-CATC
62 GTAGTGGAGTAGAAGAAAGAAAC
* * * * *
60837315 AAG-TCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* ** * **
60837378 AATAGTGGA-TCAGATCACA-TTA-
61 AGTAGTGGAGT-AGAAGAAAGAAAC
* * * * *
60837400 -AG-TCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* * ** * *
60837462 AGTGGTGGAGCAG-A-TCA-CATC
61 AGTAGTGGAGTAGAAGAAAGAAAC
* * * * *
60837483 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* ** * *
60837546 AGTAGTGGAGCAG-A-TCA-CATC
61 AGTAGTGGAGTAGAAGAAAGAAAC
* * * * *
60837567 AAG-TCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* * ** * *
60837630 AATAGTGGAGCAG-A-TCA-CATC
61 AGTAGTGGAGTAGAAGAAAGAAAC
* * * * * * *
60837651 AAG-TCTTATCTCCCTAAGCAGTAGTAGAGTAGA-CGAAAGAAACCAGTCTTATCTCCCTAGGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAGTCTTATCTCCCTAAGCA
* ** * *
60837714 GTAGTGGAGCAG-A-TCA-CATC
62 GTAGTGGAGTAGAAGAAAGAAAC
* * * *
60837734 AAG-TCTTATCTCCTTAAGCAGTAGTGGAGCATATCACATCAAGTCTTATCTCCCTAAGTAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
* *
60837798 TGGAGCAGACGAAAGAAAC
66 TGGAGTAGAAGAAAGAAAC
* * * *
60837817 CAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCTTATCTCCCTAAGCAATAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
* *
60837882 TGGAGCAGACGAAAGAAAC
66 TGGAGTAGAAGAAAGAAAC
* * *
60837901 CAAATCTTATCTCTCTAAGCAGTAGTCGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
* *
60837966 TGGAGCAGACGAAAGAAAC
66 TGGAGTAGAAGAAAGAAAC
* *
60837985 CAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAACCATA-TCTTATCTCCCTAAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-----ACATCA-AGTCTTATCTCCCTAAG
* ** *
60838047 CAGTAGTGGAGCAG-A-TCA-CAAC
60 CAGTAGTGGAGTAGAAGAAAGAAAC
*
60838069 CAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
60838134 TGGAGCAGACA-AAAGAAAC
66 TGGAGTAGA-AGAAAGAAAC
* * * * *
60838153 CAG-TCTTATCTCCATAAGCAGTAATGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* ** * *
60838216 AGTAGT-GA--AGCAGATCGCATC
61 AGTAGTGGAGTAGAAGAAAGAAAC
*
60838237 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
60838270 CGAAGGAAAC
Statistics
Matches: 1095, Mismatches: 150, Indels: 124
0.80 0.11 0.09
Matches are distributed among these distances:
80 32 0.03
81 34 0.03
82 5 0.00
83 129 0.12
84 645 0.59
85 36 0.03
86 16 0.01
87 67 0.06
88 39 0.04
89 11 0.01
90 8 0.01
91 6 0.01
92 4 0.00
93 3 0.00
95 55 0.05
97 1 0.00
98 2 0.00
99 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (84 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
TGGAGTAGAAGAAAGAAAC
Found at i:60837256 original size:95 final size:95
Alignment explanation
Indices: 60837076--60837271 Score: 270
Period size: 95 Copynumber: 2.1 Consensus size: 95
60837066 TAGTAGTTGA
*
60837076 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAACCGATAATT
1 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAACCGATAATT
***
60837141 CTATCTCCCTGGTTGGCAGTGGAAAAGATT
66 CTATCTCCCTGGTCAACAGTGGAAAAGATT
* * * *
60837171 GCAGATCAAATATGGCAGATTTTACCTCCTTGTGACTACAGTGGAGTACATTGAAGCC-AGTAGT
1 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAACCGA-TAAT
*
60837235 TCTATCTCCCTGAG-CAACAGTGGAATAGATT
65 TCTATCTCCCTG-GTCAACAGTGGAAAAGATT
*
60837266 GAAGAT
1 GCAGAT
60837272 TACAGATCTT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 1 0.01
95 87 0.98
96 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (95 bp):
GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAACCGATAATT
CTATCTCCCTGGTCAACAGTGGAAAAGATT
Found at i:60837411 original size:395 final size:395
Alignment explanation
Indices: 60836681--60837478 Score: 1452
Period size: 395 Copynumber: 2.0 Consensus size: 395
60836671 CGACAGCGGG
* *
60836681 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTATAGTGGAGTACGGTGAAGCCGATAATT
1 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAACCGATAATT
60836746 CTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAATATGGCAAATTTTACCTCCTTGTGA
66 CTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAATATGGCAAATTTTACCTCCTTGTGA
60836811 CTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCCCTGAAAAACAGTGGAATAGATTGAAGA
131 CTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCCCTGAAAAACAGTGGAATAGATTGAAGA
60836876 TTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
196 TTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
* *
60836941 TAGTGGAGTAGACGAAAGAAACCAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCACATCAA
261 TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAACAATAGTGGAGCAGATCACATCAA
*
60837006 GTCTTATCTCCCTAAGCAGTAGTGGAGTAGAAGAAAGAAACCAGATCTTATCTCCCTAAGTAGTA
326 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGTAGTA
*
60837071 GTTGA
391 GTGGA
60837076 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAACCGATAATT
1 GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAACCGATAATT
*
60837141 CTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAATATGGCAGATTTTACCTCCTTGTGA
66 CTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAATATGGCAAATTTTACCTCCTTGTGA
**
60837206 CTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCCCTGAGCAACAGTGGAATAGATTGAAGA
131 CTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCCCTGAAAAACAGTGGAATAGATTGAAGA
*
60837271 TTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAG
196 TTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
* * *
60837336 TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGATCAGATCACATTAA
261 TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAACAATAGTGGAGCAGATCACATCAA
* * *
60837401 GTCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGTAGTG
326 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGTAGTA
60837466 GTGGA
391 GTGGA
60837471 GCAGATCA
1 GCAGATCA
60837479 CATCAAGTCT
Statistics
Matches: 387, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
395 387 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (395 bp):
GCAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAACCGATAATT
CTATCTCCCTGGTTGGCAGTGGAAAAGATTGCAGATCAAATATGGCAAATTTTACCTCCTTGTGA
CTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCCCTGAAAAACAGTGGAATAGATTGAAGA
TTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAACAATAGTGGAGCAGATCACATCAA
GTCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGTAGTA
GTGGA
Found at i:60837515 original size:168 final size:166
Alignment explanation
Indices: 60837274--60838269 Score: 1130
Period size: 168 Copynumber: 6.0 Consensus size: 166
60837264 TTGAAGATTA
* * * *
60837274 CAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATC-A-CATCAAGTCTTATCTCCCTAAGTAGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAGAAACAAGTCTTATCTCCCTAAGCAGT
* *
60837337 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGATCAGATCACATTAAG
65 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAG
*
60837402 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAAGAAAC
130 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-AAAC
* * * *
60837442 CAGATCTTATCTCCCTAAGTAGTGGTGGAGCAGATC-A-CATCAAGTCTTATCTCCCTAAGCAGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAGAAACAAGTCTTATCTCCCTAAGCAGT
60837505 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAG-AAGTAGTGGAGCAGATCACATCAA
65 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAA-TAGTGGAGCAGATCACATCAA
*
60837569 GTCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAAGAAAC
129 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-AAAC
* * *
60837610 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC-A-CATCAAGTCTTATCTCCCTAAGCAGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAGAAACAAGTCTTATCTCCCTAAGCAGT
* * * *
60837673 AGTAGAGTAGACGAAAGAAACCAG-TCTTATCTCCCTAGGCAGTAGTGGAGCAGATCACATCAAG
65 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAG
* * * *
60837737 TCTTATCTCCTTAAGCAGTAGTGGAGCATATCACATC
130 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAC
* * * *
60837774 AAG-TCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGAA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC--AAGAAACAAG-TCTTATCTCCCTAAGCA
* * **
60837838 ATAGTGGAGCAGATC-ACA-TTA--AG-TCTTATCTCCCTAAGCAATAGTGGAGCAGA-CGAAAG
63 GTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC-----
* * * * * * *
60837897 AAACCAAATCTTATCTCTCTAAGCAGTAGTCGAGCAGATCACATC
122 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAC
* *
60837942 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGTCTTATCTCCCTAAGCAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC--AAGAAACAAGTCTTATCTCCCTAAGCAG
* * * * *
60838006 TAGTGGAGCAGACGAAAAAAACCATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAACCA
64 TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAA
* * *
60838071 GATATTATCTCCCTAAGCAGTAGTGGAGCAGATCACATC
129 G-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAC
* * *
60838110 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGTCTTATCTCCATAAGCAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC--AAGAAACAAGTCTTATCTCCCTAAGCAG
* * * *
60838174 TAATGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCAA
64 TAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAA
60838239 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
129 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
60838270 CGAAGGAAAC
Statistics
Matches: 742, Mismatches: 65, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
162 1 0.00
163 29 0.04
164 34 0.05
165 2 0.00
166 6 0.01
167 156 0.21
168 483 0.65
170 1 0.00
171 29 0.04
172 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (166 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAGAAACAAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAC
Found at i:60837833 original size:291 final size:291
Alignment explanation
Indices: 60837400--60838292 Score: 1253
Period size: 291 Copynumber: 3.0 Consensus size: 291
60837390 GATCACATTA
* * *
60837400 AGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGTAGT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC---A-AAACCATATCTTATCTCCCTAAGCAGT
*
60837465 GGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGA
62 AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGA
*
60837530 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGTGGA
127 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
*
60837595 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTAT
192 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
* *
60837660 CTCCCTAAGCAGTAGTAGAGTAGACGAAAGAAACC
257 CTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
* * * *
60837695 AGTCTTATCTCCCTAGGCAGTAGTGGAGCAGATC-ACATCA-AGTCTTATCTCCTTAAGCAGTAG
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCATA-TCTTATCTCCCTAAGCAGTAG
* *
60837758 TGGAGCATATCACATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAACCAGATC
64 TGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATC
* * *
60837823 TTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCTTATCTCCCTAAGCAATAGTGGAGC
129 TTATCTCCCTAAGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
* * *
60837888 AGACGAAAGAAACCAAATCTTATCTCTCTAAGCAGTAGTCGAGCAGATCACATCAAGTCTTATCT
194 AGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCT
60837953 CCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
259 CCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
60837986 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCATATCTTATCTCCCTAAGCAGT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC----AAAACCATATCTTATCTCCCTAAGCAGT
* * * * * *
60838051 AGTGGAGCAGATCACAACCAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAA
62 AGTGGAGCAGATCACATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCA
* * * * *
60838112 G-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAGAAACCAGTCTTATCTCCATAAGCAGT
125 GATCTTATCTCCCTAAGAAGTAGTGGAGCAGATC---A-CATCAAGTCTTATCTCCCTAAGCAGT
* * *
60838175 AATGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCAAG
186 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
*
60838240 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAGGAAACC
251 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
* *
60838281 AATCCTATCTCC
1 AGTCTTATCTCC
60838293 TTTAAGTTAC
Statistics
Matches: 536, Mismatches: 48, Indels: 28
0.88 0.08 0.05
Matches are distributed among these distances:
290 2 0.00
291 270 0.50
292 28 0.05
293 4 0.01
294 2 0.00
295 199 0.37
296 30 0.06
297 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (291 bp):
AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCATATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTT
ATCTCCCTAAGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAG
ACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCC
CTAAGCAGTAGTGGAGCAGACGAAAGAAACC
Found at i:60838151 original size:459 final size:459
Alignment explanation
Indices: 60837275--60838292 Score: 1577
Period size: 459 Copynumber: 2.2 Consensus size: 459
60837265 TGAAGATTAC
60837275 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
1 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
* *
60837340 GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGATCAGATCACATTAAGTCT
66 GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCT
* * * * * *
60837405 TATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGTAGTGGTGG
131 TATCTCCCTAAGCAATAGTGGAGCAGACGAAAGAAACCAAATCTTATCTCCCTAAGCAGTAGTCG
60837470 AGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTA
196 AGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTA
* * *
60837535 TCTCCCTAAGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGA
261 TCTCCCTAAGAAGTAGTGGAGCAGATCAAACCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
60837600 CGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCC
326 C--AAGAAACCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCC
* * * * *
60837665 TAAGCAGTAGTAGAGTAGACGAAAGAAACCAGTCTTATCTCCCTAGGCAGTAGTGGAGCAGATC-
389 TAAGCAGTAGTAGAGCAGACAAAAGAAACCAGTCTTATCTCCATAAGCAGTAATGGAGCAGA-CA
* *
60837729 A-CATCA
453 AGAAACA
*
60837735 AG-TCTTATCTCCTTAAGCAGTAGTGGAGCATATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
1 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
60837799 GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCT
66 GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCT
*
60837864 TATCTCCCTAAGCAATAGTGGAGCAGACGAAAGAAACCAAATCTTATCTCTCTAAGCAGTAGTCG
131 TATCTCCCTAAGCAATAGTGGAGCAGACGAAAGAAACCAAATCTTATCTCCCTAAGCAGTAGTCG
60837929 AGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAG-TCTTA
196 AGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTA
*
60837993 TCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAACCATA-TCTTATCTCCCTAAGCAGTAGTGG
261 TCTCCCTAAGAAGTAGTGGAGCAGATC-----AAACCA-AGTCTTATCTCCCTAAGCAGTAGTGG
* *
60838056 AGCAGATC-A-CAACCAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
320 AGCAGA-CAAGAAACCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTAT
*
60838119 CTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGTCTTATCTCCATAAGCAGTAATGGAGCA
384 CTCCCTAAGCAGTAGTAGAGCAGACAAAAGAAACCAGTCTTATCTCCATAAGCAGTAATGGAGCA
*
60838184 GACGAAAGAAACC
449 GAC--AAGAAACA
* * * *
60838197 AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
* *
60838262 GGAGCAGACGAAGGAAACCA-ATCCTATCTCC
66 GGAGCAGACGAAAGAAACCAGATCTTATCTCC
60838293 TTTAAGTTAC
Statistics
Matches: 513, Mismatches: 33, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
457 1 0.00
458 30 0.06
459 353 0.69
460 3 0.01
461 1 0.00
462 47 0.09
463 78 0.15
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (459 bp):
AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAGT
GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCACATTAAGTCT
TATCTCCCTAAGCAATAGTGGAGCAGACGAAAGAAACCAAATCTTATCTCCCTAAGCAGTAGTCG
AGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTA
TCTCCCTAAGAAGTAGTGGAGCAGATCAAACCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
CAAGAAACCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTA
AGCAGTAGTAGAGCAGACAAAAGAAACCAGTCTTATCTCCATAAGCAGTAATGGAGCAGACAAGA
AACA
Found at i:60839003 original size:18 final size:18
Alignment explanation
Indices: 60838977--60839016 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
60838967 TTCCTCTTCA
*
60838977 TTTTCTCTTA-TTTATTT
1 TTTTATCTTATTTTATTT
60838994 GTTTTATCTTATTTTATTT
1 -TTTTATCTTATTTTATTT
60839013 TTTT
1 TTTT
60839017 CTTTTTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTATCTTATTTTATTT
Found at i:60839822 original size:8 final size:8
Alignment explanation
Indices: 60839809--60839868 Score: 52
Period size: 8 Copynumber: 7.5 Consensus size: 8
60839799 TTTAACCGAA
60839809 TTTTTATT
1 TTTTTATT
60839817 TTTTTATT
1 TTTTTATT
60839825 TTTATT-TAT
1 TTT-TTAT-T
*
60839834 TGTTTATT
1 TTTTTATT
*
60839842 TTTGTATT
1 TTTTTATT
*
60839850 TTTGTA-T
1 TTTTTATT
*
60839857 TTTATATT
1 TTTTTATT
60839865 TTTT
1 TTTT
60839869 GTCCTTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 6 0.14
8 31 0.72
9 6 0.14
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.80
Consensus pattern (8 bp):
TTTTTATT
Found at i:60850480 original size:5 final size:5
Alignment explanation
Indices: 60850468--60850505 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
60850458 TTTGTTTTTG
* *
60850468 ATAAA AGAAA AGAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
60850506 GGCTAAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (5 bp):
ATAAA
Found at i:60854468 original size:3 final size:3
Alignment explanation
Indices: 60854460--60854487 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
60854450 GGGCCTGGAT
60854460 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
60854488 ATGTTGAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:60860075 original size:3 final size:3
Alignment explanation
Indices: 60860062--60860166 Score: 183
Period size: 3 Copynumber: 35.0 Consensus size: 3
60860052 TTTCCATTTC
*
60860062 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
60860110 TCT TCT TCT TCT TCT TCT TCC TCT TCT TCT TCT TCT TCC TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
60860158 TCT TCT TCT
1 TCT TCT TCT
60860167 ATTTAGTTGG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 96 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:60860985 original size:19 final size:19
Alignment explanation
Indices: 60860949--60860985 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
60860939 TACATATTCG
**
60860949 TATATTTATATATTTTTTT
1 TATATTTATATAAATTTTT
60860968 TATATTTATATAAATTTT
1 TATATTTATATAAATTTT
60860986 AATATATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TATATTTATATAAATTTTT
Found at i:60863503 original size:11 final size:11
Alignment explanation
Indices: 60863476--60863505 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
60863466 GAATCAGATT
60863476 TTTTTTAA-AA
1 TTTTTTAATAA
60863486 TTTTTTAATAA
1 TTTTTTAATAA
60863497 TTTTTTAAT
1 TTTTTTAAT
60863506 TGAACTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTTAATAA
Found at i:60873856 original size:13 final size:13
Alignment explanation
Indices: 60873838--60873870 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
60873828 ACAAATGAAT
60873838 GAAATTTTCAACA
1 GAAATTTTCAACA
*
60873851 GAAATTTTTAACA
1 GAAATTTTCAACA
60873864 GAAATTT
1 GAAATTT
60873871 AGGGGCCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (13 bp):
GAAATTTTCAACA
Found at i:60891816 original size:24 final size:24
Alignment explanation
Indices: 60891789--60891836 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60891779 AAAAGACGAC
*
60891789 GATAGTAGTGATGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
* *
60891813 GATAGTTCTGCTGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
60891837 TCCAGTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.40, T:0.23
Consensus pattern (24 bp):
GATAGTACTGATGAGGATGAAGAG
Found at i:60892312 original size:15 final size:15
Alignment explanation
Indices: 60892269--60892313 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
60892259 TGGTTAATGG
*
60892269 TGAGAATGATAGTGA
1 TGAGGATGATAGTGA
* * *
60892284 TGATGCTGACAGTGA
1 TGAGGATGATAGTGA
60892299 TGAGGATGATAGTGA
1 TGAGGATGATAGTGA
60892314 AGAAGACAGT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.36, T:0.27
Consensus pattern (15 bp):
TGAGGATGATAGTGA
Found at i:60900743 original size:23 final size:23
Alignment explanation
Indices: 60900708--60900761 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
60900698 TCATTATTTT
60900708 CTATTATTATTATTAATATACTA
1 CTATTATTATTATTAATATACTA
* * * *
60900731 TTATTATTCTTATTAATGTATTA
1 CTATTATTATTATTAATATACTA
60900754 CTATTATT
1 CTATTATT
60900762 TTTTTACTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (23 bp):
CTATTATTATTATTAATATACTA
Found at i:60900809 original size:3 final size:3
Alignment explanation
Indices: 60900553--60900791 Score: 61
Period size: 3 Copynumber: 80.7 Consensus size: 3
60900543 TTATATTTAT
* * * * *
60900553 TTA TTAA TT- TTA TTA TTT TTG CTA TTA TTA TTA TTA TCA TTA TTT
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
60900598 TTA TT- CTG TTA TTG TTA TTA TT- TCTC TTT TTG TT- TTCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT-A TTA TTA
* * * * *
60900642 TT- TATA TTA TTG TTA GTA CTA TTA GTA CTCT- TTA GT- TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA TTA TTA
** * * * *
60900687 TTA TTA TT- TCG TCA TTA TTT TCTA TTA TTA TTA TTA ATA -TA CTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * * *
60900731 TTA TTA TTC TTA TTAA TGTA TTA CTA TTA TT- TTT TTA CT- TTA TTA
1 TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
60900776 TTA -CA TTA TTA CTA TT
1 TTA TTA TTA TTA TTA TT
60900792 GCTATCATCA
Statistics
Matches: 172, Mismatches: 43, Indels: 42
0.67 0.17 0.16
Matches are distributed among these distances:
2 16 0.09
3 141 0.82
4 13 0.08
5 2 0.01
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:60900878 original size:3 final size:3
Alignment explanation
Indices: 60900870--60900909 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
60900860 ATATATTTAC
** *
60900870 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
60900910 GACATAACAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:60902340 original size:16 final size:17
Alignment explanation
Indices: 60902319--60902354 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
60902309 GGTAAAGTAC
*
60902319 AATTTTATTAA-TATAA
1 AATTTTATAAATTATAA
60902335 AATTTTATAAATTATAA
1 AATTTTATAAATTATAA
60902352 AAT
1 AAT
60902355 AGCCTAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTTTATAAATTATAA
Found at i:60903039 original size:15 final size:15
Alignment explanation
Indices: 60903015--60903061 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
60903005 ATAACTTAAA
60903015 TTCAACACTTAATTT
1 TTCAACACTTAATTT
* **
60903030 TTCAATACTTGTTTT
1 TTCAACACTTAATTT
60903045 TTCAACACTTAATTT
1 TTCAACACTTAATTT
60903060 TT
1 TT
60903062 TTTAACTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.02, T:0.53
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:60904034 original size:22 final size:22
Alignment explanation
Indices: 60903990--60904034 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
60903980 AAAATTATGA
* *
60903990 AATTTATATTTATATTATTTTT
1 AATTTATATTTATATGATATTT
60904012 AATTTATATTTATTATGA-ATTT
1 AATTTATATTTA-TATGATATTT
60904034 A
1 A
60904035 GGGTTGTCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
AATTTATATTTATATGATATTT
Found at i:60924461 original size:101 final size:101
Alignment explanation
Indices: 60924281--60924549 Score: 378
Period size: 101 Copynumber: 2.7 Consensus size: 101
60924271 TATTCATAGT
* * * * * *
60924281 CCTTAAATAGGAGGATCATATGCTTCAACGCACTCGAACCCATGTCCTCCTGCATAGGCAACAAA
1 CCTTAAATAGGAGGATAATATGCTTCAACGCACTTGAACCCACGTCCTCCTGCATTGACAACAAT
**
60924346 GCTCATGCCCAGAACTACCCATAGTCCCTCTTCAAC
66 GCTCATGCCCAGAACTACCCATAGTCCCTCCCCAAC
* * *
60924382 TCTTAAATAGGAGGATAATGTGCTTCAACGCACTTGAACCCACGTCCTCTTGCATTGACAACAAT
1 CCTTAAATAGGAGGATAATATGCTTCAACGCACTTGAACCCACGTCCTCCTGCATTGACAACAAT
*
60924447 GCTCATGCCTAGAACTACCCATAGTCCCTCCCCAAC
66 GCTCATGCCCAGAACTACCCATAGTCCCTCCCCAAC
* * * *
60924483 CCTTAAATAGGAGGATAATACGCTTCATCGCA-TTCGAACCCACGTCCTCCTACACTGACAACAA
1 CCTTAAATAGGAGGATAATATGCTTCAACGCACTT-GAACCCACGTCCTCCTGCATTGACAACAA
60924547 TGC
65 TGC
60924550 CAATACTGAT
Statistics
Matches: 148, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
100 2 0.01
101 146 0.99
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (101 bp):
CCTTAAATAGGAGGATAATATGCTTCAACGCACTTGAACCCACGTCCTCCTGCATTGACAACAAT
GCTCATGCCCAGAACTACCCATAGTCCCTCCCCAAC
Found at i:60925158 original size:17 final size:18
Alignment explanation
Indices: 60925138--60925176 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
60925128 CTTTTTTTGA
*
60925138 ATTTATGATTTTTTAA-T
1 ATTTATAATTTTTTAATT
*
60925155 ATTTTTAATTTTTTAATT
1 ATTTATAATTTTTTAATT
60925173 ATTT
1 ATTT
60925177 CTTGGCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
ATTTATAATTTTTTAATT
Found at i:60932288 original size:33 final size:32
Alignment explanation
Indices: 60932181--60932288 Score: 81
Period size: 37 Copynumber: 3.1 Consensus size: 32
60932171 TAACTTAGTG
60932181 TTATTTAAGTGTATATATTTTTTAAATTTATTT
1 TTATTTAA-TGTATATATTTTTTAAATTTATTT
* ** * * * *
60932214 GTAATTTGTTGAAAAATATTTATTTTAATGTTTTTAGT
1 -TTATTTAATG-TATATATTT-TTTAAAT-TTATT--T
60932252 TTATTTAATGTATTATATTTTTTAAATTTATTT
1 TTATTTAATGTA-TATATTTTTTAAATTTATTT
60932285 TTAT
1 TTAT
60932289 ATAAAAATAA
Statistics
Matches: 54, Mismatches: 14, Indels: 13
0.67 0.17 0.16
Matches are distributed among these distances:
33 7 0.13
34 12 0.22
35 10 0.19
36 11 0.20
37 13 0.24
38 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (32 bp):
TTATTTAATGTATATATTTTTTAAATTTATTT
Found at i:60946571 original size:22 final size:23
Alignment explanation
Indices: 60946531--60946573 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
60946521 AAAGGATAAA
**
60946531 TTTTAATTTTTATTTCAAATATT
1 TTTTAATTTTTATACCAAATATT
60946554 TTTTAA-TTTTATACCAAATA
1 TTTTAATTTTTATACCAAATA
60946574 AAATCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTAATTTTTATACCAAATATT
Found at i:60947006 original size:58 final size:58
Alignment explanation
Indices: 60946916--60947033 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
60946906 TGAGGACCAG
60946916 AGAAAAAGTTGGAGGACTGAGAAGGCACCGACAAATTATTTTACTTTAAAGGGTTAGT
1 AGAAAAAGTTGGAGGACTGAGAAGGCACCGACAAATTATTTTACTTTAAAGGGTTAGT
60946974 AGAAAAAGTTGGAGGACTGAGAAGGCACCGACAAATTATTTTACTTTAAAGGGTTAGT
1 AGAAAAAGTTGGAGGACTGAGAAGGCACCGACAAATTATTTTACTTTAAAGGGTTAGT
60947032 AG
1 AG
60947034 TTAATATTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.25
Consensus pattern (58 bp):
AGAAAAAGTTGGAGGACTGAGAAGGCACCGACAAATTATTTTACTTTAAAGGGTTAGT
Found at i:60952018 original size:9 final size:9
Alignment explanation
Indices: 60952000--60952057 Score: 71
Period size: 9 Copynumber: 6.4 Consensus size: 9
60951990 TTTGGTTAAA
60952000 AATTAACCG
1 AATTAACCG
*
60952009 AATTACCCG
1 AATTAACCG
*
60952018 AATTAACTG
1 AATTAACCG
* *
60952027 GATTACCCG
1 AATTAACCG
*
60952036 AATTACCCG
1 AATTAACCG
60952045 AATTAACCG
1 AATTAACCG
60952054 AATT
1 AATT
60952058 GAATCACTAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:60952023 original size:18 final size:18
Alignment explanation
Indices: 60952000--60952057 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
60951990 TTTGGTTAAA
60952000 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
* *
60952018 AATTAACTGGATTACCCG
1 AATTAACCGAATTACCCG
* *
60952036 AATTACCCGAATTAACCG
1 AATTAACCGAATTACCCG
60952054 AATT
1 AATT
60952058 GAATCACTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:60952108 original size:6 final size:6
Alignment explanation
Indices: 60952097--60952125 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
60952087 ACTTTTAGAC
60952097 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
60952126 AATTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Found at i:60952149 original size:20 final size:20
Alignment explanation
Indices: 60952081--60952138 Score: 66
Period size: 18 Copynumber: 3.0 Consensus size: 20
60952071 ATTAAATTAT
* *
60952081 TTTTAGACTTTTAGACTTTAG
1 TTTTAGAATTTTAG-TTTTAG
60952102 TTTTAG--TTTTAGTTTTAG
1 TTTTAGAATTTTAGTTTTAG
*
60952120 TTTTAGAATTTTATTTTTA
1 TTTTAGAATTTTAGTTTTA
60952139 TTTATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 11 0.33
19 6 0.18
20 10 0.30
21 6 0.18
ACGTcount: A:0.22, C:0.03, G:0.12, T:0.62
Consensus pattern (20 bp):
TTTTAGAATTTTAGTTTTAG
Found at i:60964687 original size:162 final size:163
Alignment explanation
Indices: 60964407--60964724 Score: 516
Period size: 162 Copynumber: 2.0 Consensus size: 163
60964397 TTCTTCTCTA
*
60964407 TAACCTCTACAACCATCTACACCACTATAGTCCGATGACTCTCTATCCCACAAGAATAAACCGGT
1 TAACCTCTACAACCATCTACACCACTATAGTCCGATCACTCTCTATCCCACAAGAATAAACCGGT
* * * *
60964472 ACCTTTCTTGTCATCTTTCTCCCTTTGTGGGTTCCTACTATCCACATGAAGTAATAGTAGGCTAA
66 ACCTTTCTTGTCATCTTTCTCCCTTTGTGGATTCCTACAATCCACACGAAGTAATAGTAGACTAA
*
60964537 AGGGTT-ACAGATTGAAAATGTTGTTCCTCAAC
131 AGGGTTAAAAGATTGAAAATGTTGTTCCTCAAC
*
60964569 TAACCTCTACAACCATCTACACCATTATAGTCCGATCACTCTCTATCGCC-CAAGAATAAA-CGG
1 TAACCTCTACAACCATCTACACCACTATAGTCCGATCACTCTCTATC-CCACAAGAATAAACCGG
* *
60964632 ATACCTTTCTTGTCATCTTTCTCCCTTTGTTGATTCCTACAATCTACACGAAGTAATAGTAGACT
65 -TACCTTTCTTGTCATCTTTCTCCCTTTGTGGATTCCTACAATCCACACGAAGTAATAGTAGACT
60964697 AAAGGGTTAAAAGATTGAAAATGTTGTT
129 AAAGGGTTAAAAGATTGAAAATGTTGTT
60964725 GAGGAAATTA
Statistics
Matches: 144, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
161 3 0.02
162 121 0.84
163 20 0.14
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (163 bp):
TAACCTCTACAACCATCTACACCACTATAGTCCGATCACTCTCTATCCCACAAGAATAAACCGGT
ACCTTTCTTGTCATCTTTCTCCCTTTGTGGATTCCTACAATCCACACGAAGTAATAGTAGACTAA
AGGGTTAAAAGATTGAAAATGTTGTTCCTCAAC
Found at i:60965634 original size:32 final size:32
Alignment explanation
Indices: 60965588--60965659 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
60965578 TTCCTAATTT
*
60965588 CAGAATTAGTCCCTACAATTTAACCAATCTTG
1 CAGAATTAGGCCCTACAATTTAACCAATCTTG
* * *
60965620 TAGAATTAGGCCCTATAGTTTAACCAATCTTG
1 CAGAATTAGGCCCTACAATTTAACCAATCTTG
60965652 CAGAATTA
1 CAGAATTA
60965660 AGCTAAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (32 bp):
CAGAATTAGGCCCTACAATTTAACCAATCTTG
Found at i:60968694 original size:47 final size:47
Alignment explanation
Indices: 60968607--60968697 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 47
60968597 TTAGAAAATT
* *
60968607 ATAAAAATTAAATAGAAATTTTAATAATATATAAAATATATAAATAC
1 ATAAAAATTAAATAGAAATTTTAATAAGATAAAAAATATATAAATAC
*
60968654 ATAAAAATTAAAT-GAAAATTTTAA-AAGCTAAAAAATTATATAAA
1 ATAAAAATTAAATAG-AAATTTTAATAAGATAAAAAA-TATATAAA
60968698 AAATTTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
46 9 0.23
47 30 0.77
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (47 bp):
ATAAAAATTAAATAGAAATTTTAATAAGATAAAAAATATATAAATAC
Found at i:60968708 original size:11 final size:12
Alignment explanation
Indices: 60968682--60968714 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
60968672 TTTTAAAAGC
60968682 TAAAAAATTATA
1 TAAAAAATTATA
*
60968694 TAAAAAATT-TT
1 TAAAAAATTATA
60968705 TAAAAAATTA
1 TAAAAAATTA
60968715 AAATAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAAAATTATA
Found at i:60974873 original size:17 final size:16
Alignment explanation
Indices: 60974835--60974874 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
60974825 GTTTATATTT
60974835 TTATTATTTAATAATA
1 TTATTATTTAATAATA
*
60974851 TATATTATTTCATAATTA
1 T-TATTATTTAATAA-TA
60974869 TTATTA
1 TTATTA
60974875 AAAATAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 17 0.81
18 3 0.14
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATTATTTAATAATA
Found at i:60975648 original size:20 final size:19
Alignment explanation
Indices: 60975623--60975675 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
60975613 AACTCAAAAG
*
60975623 GTTTAAAGTTTAAAGTTTGA
1 GTTT-AAGTTTAAAGTTCGA
*
60975643 GTTTAAGATTTAAGGTTCGA
1 GTTTAAG-TTTAAAGTTCGA
*
60975663 GTTCGAAGTTTAA
1 GTT-TAAGTTTAA
60975676 TATAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 3 0.11
20 22 0.79
21 3 0.11
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.42
Consensus pattern (19 bp):
GTTTAAGTTTAAAGTTCGA
Found at i:60975915 original size:12 final size:13
Alignment explanation
Indices: 60975896--60975931 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
60975886 ACTATTATAC
60975896 ATATTATAATTAT
1 ATATTATAATTAT
60975909 A-ATTATAATTA-
1 ATATTATAATTAT
60975920 ATATT-TAATTAT
1 ATATTATAATTAT
60975932 TTAAATCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 7 0.33
12 13 0.62
13 1 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATATTATAATTAT
Found at i:60978809 original size:3 final size:3
Alignment explanation
Indices: 60978801--60978870 Score: 97
Period size: 3 Copynumber: 23.3 Consensus size: 3
60978791 TAGAAGAGTC
* * *
60978801 TGA TGA TGA AGA TGA TGA TGA TGA TGA TGA TGA TGA -GTC TGA TGG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA
60978846 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
60978871 AAAGAAACAA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
2 1 0.02
3 57 0.97
4 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.34, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:61004958 original size:15 final size:15
Alignment explanation
Indices: 61004938--61004967 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
61004928 GATCTCCTGT
61004938 GGTTCAGGATGGGGC
1 GGTTCAGGATGGGGC
61004953 GGTTCAGGATGGGGC
1 GGTTCAGGATGGGGC
61004968 CACTTGTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20
Consensus pattern (15 bp):
GGTTCAGGATGGGGC
Found at i:61007025 original size:28 final size:28
Alignment explanation
Indices: 61006975--61007032 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
61006965 AAATTATTTA
* * *
61006975 AAATTTGTAAAAATAATTTTTATTTTTT
1 AAATTTGTAAAAAAAATTATTATTTGTT
61007003 AAATTT-TAAAAAAAATTAATTATTTGTT
1 AAATTTGTAAAAAAAATT-ATTATTTGTT
61007031 AA
1 AA
61007033 TGTGACATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (28 bp):
AAATTTGTAAAAAAAATTATTATTTGTT
Found at i:61013573 original size:8 final size:8
Alignment explanation
Indices: 61013549--61013620 Score: 60
Period size: 8 Copynumber: 9.0 Consensus size: 8
61013539 AGTTCAGTGG
61013549 AAAAA-AA
1 AAAAATAA
* *
61013556 AAGAACAA
1 AAAAATAA
61013564 AAAAATAA
1 AAAAATAA
*
61013572 AAAACTAA
1 AAAAATAA
*
61013580 AAAAACAA
1 AAAAATAA
61013588 AAGCAAA-AA
1 AA--AAATAA
61013597 AAAACA-AA
1 AAAA-ATAA
61013605 AAAAATAA
1 AAAAATAA
61013613 AAAAATAA
1 AAAAATAA
61013621 GAGAAAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
7 7 0.13
8 40 0.74
9 4 0.07
10 3 0.06
ACGTcount: A:0.85, C:0.07, G:0.03, T:0.06
Consensus pattern (8 bp):
AAAAATAA
Found at i:61013574 original size:9 final size:9
Alignment explanation
Indices: 61013550--61013617 Score: 52
Period size: 9 Copynumber: 7.8 Consensus size: 9
61013540 GTTCAGTGGA
*
61013550 AAAAAAAAG
1 AAAAAAAAC
61013559 AACAAAAAA-
1 AA-AAAAAAC
*
61013568 ATAAAAAAC
1 AAAAAAAAC
*
61013577 TAAAAAAAC
1 AAAAAAAAC
**
61013586 -AAAAGCA-
1 AAAAAAAAC
61013593 AAAAAAAAC
1 AAAAAAAAC
*
61013602 AAAAAAAAT
1 AAAAAAAAC
61013611 AAAAAAA
1 AAAAAAA
61013618 TAAGAGAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
8 16 0.34
9 25 0.53
10 6 0.13
ACGTcount: A:0.85, C:0.07, G:0.03, T:0.04
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:61013590 original size:32 final size:31
Alignment explanation
Indices: 61013549--61013631 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 31
61013539 AGTTCAGTGG
* *
61013549 AAAAAAAAAGAACAAAAAAA-TAAAAAACTAA
1 AAAAAAAAAGAA-AAAAAAACAAAAAAAATAA
61013580 AAAAACAAAAGCAAAAAAAAACAAAAAAAATAA
1 AAAAA-AAAAG-AAAAAAAAACAAAAAAAATAA
*
61013613 AAAAATAAGAGAAAAAAAA
1 AAAAA-AAAAGAAAAAAAA
61013632 CCTCTACCGG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
31 5 0.11
32 20 0.44
33 20 0.44
ACGTcount: A:0.84, C:0.06, G:0.05, T:0.05
Consensus pattern (31 bp):
AAAAAAAAAGAAAAAAAAACAAAAAAAATAA
Found at i:61014085 original size:13 final size:12
Alignment explanation
Indices: 61014067--61014100 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
61014057 AAAAAAAACG
61014067 AAAAAAGAAGAGA
1 AAAAAAGAAGA-A
61014080 AAAAAAGAAGAA
1 AAAAAAGAAGAA
*
61014092 CAAAAAGAA
1 AAAAAAGAA
61014101 AAAGGAGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAGAA
Found at i:61015232 original size:100 final size:100
Alignment explanation
Indices: 61015054--61015639 Score: 693
Period size: 100 Copynumber: 5.9 Consensus size: 100
61015044 GGCGATGCAA
* * *
61015054 TGGATCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTAAAGAGATTGAAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
* * *
61015118 CCACAACGGCGAATCTCACTTTTTTGGCAGTACAG
66 CCACAACGGTGAATCTCACTTCTCTGGCAGTACAG
* * * * ** * *
61015153 TAGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCTCTAATATTGCAATTAAAAATATTGAAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
* * *
61015218 CCGCAACGGTGAATCTTACTT-TCCTGGC-GATGCAG
66 CCACAACGGTGAATCTCACTTCT-CTGGCAG-TACAG
* * *
61015253 TGGATCAGATTAAAGCTACAACGGTGAATCTTG-TTCCCCGACATTGCAATTAAAGAGATTGAAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
*
61015317 CCACAACGGCGAATCTCACTTCTCTGGCAGTACAG
66 CCACAACGGTGAATCTCACTTCTCTGGCAGTACAG
* ** * * *
61015352 TGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTAACATTACAATTAAAGAGATTGGAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
*
61015417 CCACAACGGGGAATCTCACTTCTCTGGCAGTACAG
66 CCACAACGGTGAATCTCACTTCTCTGGCAGTACAG
* * * *
61015452 TGGAGCAGATTAAAGCTACGACGGCAAATCTTGCTTCCCCGACATTGCAATTTAAAATATTGAAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
* * ** *
61015517 CCGCAACGGTGAATCTTACTTC-CTTGGTGGTGCAG
66 CCACAACGGTGAATCTCACTTCTC-TGGCAGTACAG
* * * *
61015552 T-GAGACTGATTGAAGTTACAACGGCGAATCTT-ATTCCCCGACATTGCAATTAAAGAA-ATTGA
1 TGGAG-CAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAA-AAGATTGA
*
61015614 AGCCACAACAGTGAATCTCACTTCTC
64 AGCCACAACGGTGAATCTCACTTCTC
61015640 CCTAAGTAGT
Statistics
Matches: 416, Mismatches: 61, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
99 162 0.39
100 254 0.61
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (100 bp):
TGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
CCACAACGGTGAATCTCACTTCTCTGGCAGTACAG
Found at i:61015412 original size:50 final size:50
Alignment explanation
Indices: 61015060--61015631 Score: 242
Period size: 50 Copynumber: 11.5 Consensus size: 50
61015050 GCAATGGATC
* *
61015060 AGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* ** *** * * * *
61015109 AGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGCAGTAC-AGTAGAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * * * * * * *
61015158 CAGATTAAAGCTACGACGGTGAATCTTGCTTCTCTAATATTGCAATTAAAA
1 -AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* ** * * * * * * ** **
61015209 ATATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGA-TGCAGTGGATC
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGAC-ATTACAATTAAAG
* * * *
61015259 AGATTAAAGCTACAACGGTGAATCTTG-TTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* ** * * * * **
61015308 AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTAC-AGTGGAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * *
61015357 CAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTAACATTACAATTAAAG
1 -AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * * ** * * * * **
61015408 AGATTGGAGCCACAACGGGGAATCTCACTTCTCTGGCAGTAC-AGTGGAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * * * *
61015457 CAGATTAAAGCTACGACGGCAAATCTTGCTTCCCCGACATTGCAATTTAAA-
1 -AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAA-TTAAAG
* ** * * * **** * * * * *
61015508 ATATTGAAGCCGCAACGGTGAATCTTACTTCCTTGGTGGTGCAGTGAGAC
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * * * *
61015558 TGATTGAAGTTACAACGGCGAATCTT-ATTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
* * * *
61015607 AAATTGAAGCCACAACAGTGAATCT
1 AGATTGAAGCTACAACGGCGAATCT
61015632 CACTTCTCCC
Statistics
Matches: 359, Mismatches: 152, Indels: 24
0.67 0.28 0.04
Matches are distributed among these distances:
48 1 0.00
49 105 0.29
50 241 0.67
51 10 0.03
52 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTACAATTAAAG
Found at i:61015637 original size:199 final size:199
Alignment explanation
Indices: 61015042--61015639 Score: 771
Period size: 199 Copynumber: 3.0 Consensus size: 199
61015032 GTTACCTTTC
* * *
61015042 CTGGCGATGCAATGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAA
1 CTGGCGATACAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAA
*
61015107 AGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGCAGTACAGT-AGAGCAGATTAAAGCTA
66 AGAGATTGAAGCCACAACGGCGAATCTCAC-TTCTTGGCAGTACAGTGAGAGCAGATTAAAGCTA
* * * * *
61015171 CGACGGTGAATCTTGCTTCTCTAATATTGCAATTAAA-AATATTGAAGCCGCAACGGTGAATCTT
130 CGACGGCGAATCTTGCTTCCCTAACATTGCAATTAAAGAA-ATTGAAGCCACAACGGTGAATCTC
61015235 ACTT-T
194 ACTTCT
* *
61015240 CCTGGCGATGCAGTGGATCAGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTGCAATTA
1 -CTGGCGATACAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
61015305 AAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTG-GAGCAGATTAAAGCT
65 AAGAGATTGAAGCCACAACGGCGAATCTCACTTCT-TGGCAGTACAGTGAGAGCAGATTAAAGCT
* * * *
61015369 ACGACGGCGAATCTTGCTTCCCTAACATTACAATTAAAGAGATTGGAGCCACAACGGGGAATCTC
129 ACGACGGCGAATCTTGCTTCCCTAACATTGCAATTAAAGAAATTGAAGCCACAACGGTGAATCTC
61015434 ACTTCT
194 ACTTCT
* * *
61015440 CTGGC-AGTACAGTGGAGCAGATTAAAGCTACGACGGCAAATCTTGCTTCCCCGACATTGCAATT
1 CTGGCGA-TACAGTGGATCAGATTAAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAA-T
* * * * ** * * *
61015504 TAAA-ATATTGAAGCCGCAACGGTGAATCTTACTTCCTTGGTGGTGCAGTGAGA-CTGATTGAAG
63 TAAAGAGATTGAAGCCACAACGGCGAATCTCACTT-CTTGGCAGTACAGTGAGAGCAGATTAAAG
* * * ** *
61015567 TTACAACGGCGAATCTT-ATTCCCCGACATTGCAATTAAAGAAATTGAAGCCACAACAGTGAATC
127 CTACGACGGCGAATCTTGCTTCCCTAACATTGCAATTAAAGAAATTGAAGCCACAACGGTGAATC
61015631 TCACTTCT
192 TCACTTCT
61015639 C
1 C
61015640 CCTAAGTAGT
Statistics
Matches: 353, Mismatches: 37, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
198 4 0.01
199 263 0.75
200 77 0.22
201 9 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (199 bp):
CTGGCGATACAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAA
AGAGATTGAAGCCACAACGGCGAATCTCACTTCTTGGCAGTACAGTGAGAGCAGATTAAAGCTAC
GACGGCGAATCTTGCTTCCCTAACATTGCAATTAAAGAAATTGAAGCCACAACGGTGAATCTCAC
TTCT
Found at i:61015638 original size:299 final size:298
Alignment explanation
Indices: 61015054--61015639 Score: 879
Period size: 299 Copynumber: 2.0 Consensus size: 298
61015044 GGCGATGCAA
* * * *
61015054 TGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGC
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCAACATTACAATTAAAGAGATTGAAGC
* * **
61015119 CACAACGGCGAATCTCACTTTTTTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGTGAATCT
66 CACAACGGCGAATCTCACTTCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCAAATCT
* * *
61015184 TGCTTCTCTAATATTGCAATTAAAAATATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGAT
131 TGCTTCCCCAACATTGCAATTAAAAATATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGAT
* * *
61015249 GCAGTGGATCAGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTG
196 GCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAAAGAAATTG
*
61015314 AAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAG
261 AAGCCACAACAGCGAATCTCACTTCTCTGGCAGTACAG
* * *
61015352 TGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTAACATTACAATTAAAGAGATTGGAG
1 TGGAGCAGATTAAAGCTACAACGGCGAATCTTG-TTCCCCAACATTACAATTAAAGAGATTGAAG
* *
61015417 CCACAACGGGGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCAAATC
65 CCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCAAATC
* * *
61015482 TTGCTTCCCCGACATTGCAATTTAAAATATTGAAGCCGCAACGGTGAATCTTAC-TTCCTTGGTG
130 TTGCTTCCCCAACATTGCAATTAAAAATATTGAAGCCGCAACGGTGAATCTTACTTTCC-TGGCG
* * * *
61015546 GTGCAGTGAGA-CTGATTGAAGTTACAACGGCGAATCTTATTCCCCGACATTGCAATTAAAGAAA
194 ATGCAGTG-GATCAGATTAAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAAAGAAA
*
61015610 TTGAAGCCACAACAGTGAATCTCACTTCTC
258 TTGAAGCCACAACAGCGAATCTCACTTCTC
61015640 CCTAAGTAGT
Statistics
Matches: 257, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
298 34 0.13
299 221 0.86
300 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (298 bp):
TGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCAACATTACAATTAAAGAGATTGAAGC
CACAACGGCGAATCTCACTTCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCAAATCT
TGCTTCCCCAACATTGCAATTAAAAATATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGAT
GCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAAAGAAATTG
AAGCCACAACAGCGAATCTCACTTCTCTGGCAGTACAG
Found at i:61015691 original size:40 final size:40
Alignment explanation
Indices: 61015636--61015827 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 40
61015626 GAATCTCACT
* * *
61015636 TCTCCCTAAGTAGTAGTGGAGCAGATCACATCTAGTCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAATCCAGTCTTA
* * *
61015676 TCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATC---A-AATCCAGTCTTA
* ** * * * *
61015719 TCTCCCTGGAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTA
1 TCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATC-CAG-TCTTA
* *
61015763 TCTCCCTAAGCAGTGGTGGAGCAGATCACATCCAGTCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAATCCAGTCTTA
61015803 TCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTCCCTAAGCAGTAGTGGAGCAGA
61015828 CGAAAGAAAC
Statistics
Matches: 118, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
39 1 0.01
40 53 0.45
41 3 0.03
42 8 0.07
43 29 0.25
44 24 0.20
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (40 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCAAATCCAGTCTTA
Found at i:61015721 original size:43 final size:42
Alignment explanation
Indices: 61015674--61015852 Score: 150
Period size: 43 Copynumber: 4.2 Consensus size: 42
61015664 CATCTAGTCT
61015674 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAA-AAACCAATCC
* ** * * ** * *
61015717 TATCTCCCTGGAGTTGCAGTGGAGCGGA-TTAAAACCACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAAAAC-CA-ATCC
* * * * *
61015761 TATCTCCCTAAGCAGTGGTGGAGCAGATC---ACATCCAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAACCAATCC
61015801 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAA-AAACCAATCC
61015844 TATCTCCCT
1 TATCTCCCT
61015853 GAAGTTGCAG
Statistics
Matches: 104, Mismatches: 23, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
39 1 0.01
40 29 0.28
41 2 0.02
42 7 0.07
43 40 0.38
44 25 0.24
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (42 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAACCAATCC
Found at i:61015862 original size:127 final size:127
Alignment explanation
Indices: 61015627--61015895 Score: 459
Period size: 127 Copynumber: 2.1 Consensus size: 127
61015617 CACAACAGTG
* *
61015627 AATCTCACTTCTCCCTAAGTAGTAGTGGAGCAGATCACATCTAGTCTTATCTCCCTAAGCAGTAG
1 AATCTCA--TCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAG
*
61015692 TGGAGCAGACGAAAGAAACCAATCCTATCTCCCTGGAGTTGCAGTGGAGCGGATTAAAACCACA
64 TGGAGCAGACGAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
* * *
61015756 GATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTCATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTG
61015821 GAGCAGACGAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
66 GAGCAGACGAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
61015883 AATCTCATC-CCCT
1 AATCTCATCTCCCT
61015896 GAAGGCACAG
Statistics
Matches: 132, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
126 4 0.03
127 123 0.93
129 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (127 bp):
AATCTCATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACGAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
Found at i:61017884 original size:127 final size:128
Alignment explanation
Indices: 61017694--61017938 Score: 336
Period size: 127 Copynumber: 1.9 Consensus size: 128
61017684 TTCAAAAGGG
*
61017694 TAAAATTTTAAAAATAAAGGCAATATTCTGAATTTAGAAAATTCAAGAAATCGTACCCTAACTTA
1 TAAAATTTCAAAAATAAAGGCAATATTCTGAATTTAGAAAATTCAAGAAATCGTACCCTAACTTA
*
61017759 CT-GGTTCTCGA-TCTTCTCGTTAAACCTAAATAGCAAAATATCCTTTTAAATTTCCAAAAACA
66 CTGGGTT-TCGATTCTTCTCGTTAAACCTAAATAACAAAATATCCTTTTAAATTTCCAAAAACA
* * *
61017821 TAAAATTTCCAAAATAAAGGC-ATATTCT-ATATTTAGAAAATTCGAGAAAATCGTGCCCTAACT
1 TAAAATTTCAAAAATAAAGGCAATATTCTGA-ATTTAGAAAATTCAAG-AAATCGTACCCTAACT
* * **
61017884 TACTGGGTTTCGATTTTTTTCTCGTTAATCCTAAATAACCGAATATCCTTTTAAA
64 TACTGGGTTTCGA--TTCTTCTCGTTAAACCTAAATAACAAAATATCCTTTTAAA
61017939 ATTGAAATAA
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
125 1 0.01
126 22 0.21
127 42 0.41
128 4 0.04
130 34 0.33
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (128 bp):
TAAAATTTCAAAAATAAAGGCAATATTCTGAATTTAGAAAATTCAAGAAATCGTACCCTAACTTA
CTGGGTTTCGATTCTTCTCGTTAAACCTAAATAACAAAATATCCTTTTAAATTTCCAAAAACA
Found at i:61019747 original size:20 final size:20
Alignment explanation
Indices: 61019696--61019767 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
61019686 AAAACTATAA
*
61019696 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTAAAAATT
61019716 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
* *
61019735 ATTTTTAATTTTTGAAAATT
1 ATTTTGAATTTTTAAAAATT
61019755 ATTTTGAATTTTT
1 ATTTTGAATTTTT
61019768 CTTGTAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.17
19 11 0.24
20 27 0.59
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Done.